Citrus Sinensis ID: 046226

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MSSLDSPNPSFAIRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGHEYFELQEG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEcccccccEEEEEcccccEEcccccccccEEEEcccccccEEEccccccccccccccEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccEEEEEEEEccccEEEEEEEcccEEEEEccccEEEEEccccccEEEEEEEEcccccccEEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEccccccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEcccccccccEEEEEEcccEEEEccccccEEEccccccccEEEEEEcccccccEEEEEEEEccccccccccccEEEEccccccEEEEEccccccccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEcccccEEEcccccccEEEEEcccccEEEEccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccccccEEEEEccccccEEEEcccccEEEEEccccEEEEEEccccccccEEEEEccccccEEEEEEccccEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEcccccEEEccc
Coil and Loop (DISEMBL)
mssldspnpsfairettptgtapstflrsistkepsfstfpyspprfsspislhtsplssprhpfnptaaagssspetsssyRCISSVLKKDGQILCIAVGngfiytgsdsnviriwkqpeftecgrlkaKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVklatipktggavRNLIVGkdkmmkhmgpiTSIAinvsddtlysasLDKTIKVWRIRDSKCIETIQAhsepinalvvaddgvlysasddaTVRVWRRYFYSENQLHTLILTLTakyspvktltltlddgllyggctdgyiHYWHKGWFSAQLqyggalqgHTHAVMCLASVANYVisgsadstsRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLgrfgeetedeyctiCTGSLDGVLKMwrvtrpksscghlnktngheyFELQEG
Flexible Loop (DISEMBL)
mssldspnpsfairettptgtapstflrsiSTKEPSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAaagssspetssSYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHvklatipktggavrNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTrpksscghlnktngheyfelqeg
Low Complexity Region (SEG)
MSSLDSPNPSFAIRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNptaaagssspetsssYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKtltltlddgllyggctdgyIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGHEYFELQEG
Disordered region (IsUnstruct)
*********************************************************************************YRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK**C*****************
Disordered Region (DISOPRED)
**********************************PSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGHEYFELQEG
Disordered Region (DISEMBL)
*********SFAIRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPRHPFN*****************CISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGHEYFELQEG
Disordered Region (DISPRO)
**************ETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGHEYFELQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLDSPNPSFAIRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGHEYFELQEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.714	0.203	0.261	6e-16
P87053	605	F-box/WD repeat-containin	yes	no	0.626	0.449	0.246	2e-15
P90648	732	Myosin heavy chain kinase	yes	no	0.338	0.200	0.333	2e-15
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.649	0.167	0.262	5e-15
P42527	1146	Myosin heavy chain kinase	no	no	0.433	0.164	0.302	6e-13
Q9VZF4	1326	F-box/WD repeat-containin	yes	no	0.520	0.170	0.250	8e-13
Q09990	665	F-box/WD repeat-containin	yes	no	0.437	0.285	0.268	2e-12
Q23256	501	Uncharacterized WD repeat	no	no	0.778	0.674	0.221	2e-12
Q61FW2	589	F-box/WD repeat-containin	N/A	no	0.629	0.463	0.246	2e-12
Q93794	587	F-box/WD repeat-containin	no	no	0.645	0.477	0.258	4e-12

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 85.5 bits (210), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 159/378 (42%), Gaps = 68/378 (17%)

Query: 78   TSSSYRCIS--------SVLKKD-GQILCIAVG-NGFIY-TGSDSNVIRIWKQPEFTECG 126
            T++S RC++        SV  K  G +L +A   +G ++ TG    ++R W+     E  
Sbjct: 841  TNTSLRCVNFTEANLAYSVFTKILGSVLTVAFSPDGKLFATGDSGGIVRFWEAATGKELL 900

Query: 127  RLKAKTSMVVAMEVSHDRVYAAYG--DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLI 184
              K   S V ++  S D    A G  D  +R+W  +    +K  K  T       VR+++
Sbjct: 901  TCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHT-----SRVRSVV 955

Query: 185  VGKDKMM-------------------------KHMGPITSIAINVSDDTLYSASLDKTIK 219
               + +M                          H G + S+A N+    L + S D+T++
Sbjct: 956  FSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVR 1015

Query: 220  VWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT 278
            +W I  S+C    Q H+  + ++V + DG +L S SDD TVR+W     S N L+    T
Sbjct: 1016 LWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWD--ISSGNCLY----T 1069

Query: 279  LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV 338
            L    S V+++  + D  +L  G  D  +  W     S    Y   LQG+T  V  L   
Sbjct: 1070 LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDIS--SGNCLY--TLQGYTSWVRFLVFS 1125

Query: 339  ANYVI--SGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI 396
             N V   +GS+D   R+W          L  L GH   +  A+AF          +  T+
Sbjct: 1126 PNGVTLANGSSDQIVRLW---DISSKKCLYTLQGHTNWVN-AVAF--------SPDGATL 1173

Query: 397  CTGSLDGVLKMWRVTRPK 414
             +GS D  +++W ++  K
Sbjct: 1174 ASGSGDQTVRLWDISSSK 1191

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P87053|POF1_SCHPO F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 141/329 (42%), Gaps = 57/329 (17%)

Query: 83  RCISSVLK--KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
           RC   VL    DG ++C+ +    + +GS    IR+W    F +   L+  +S V  ++ 
Sbjct: 263 RCRQVVLSGHSDG-VMCLQLVRNILASGSYDATIRLWNLATFQQVALLEGHSSGVTCLQF 321

Query: 141 SHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI 200
              ++ +   D  IR+W                        N    +   + H    + +
Sbjct: 322 DQCKLISGSMDKTIRIW------------------------NYRTSECISILHGHTDSVL 357

Query: 201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINAL-VVADDGVLYSASDDATV 259
            +      L S S D T+K+W     K I T++ H+ P+N++ ++ D G++ S SDD+T+
Sbjct: 358 CLTFDSTLLVSGSADCTVKLWHFSGGKRI-TLRGHTGPVNSVRIIRDRGLVLSGSDDSTI 416

Query: 260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL 319
           ++W        + +T + T +A   PV++L L   D  L+    DG I    K W   + 
Sbjct: 417 KIWSL------ETNTCLHTFSAHIGPVQSLALA--DSRLFSCSLDGTI----KQWDIEKK 464

Query: 320 QYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAI 379
           +    L GH   V  +A+    +ISG+ D   +VW    +  HT    L  H  P+  ++
Sbjct: 465 KCVHTLFGHIEGVWEIAADHLRLISGAHDGVVKVW-EACECVHT----LKNHSEPVT-SV 518

Query: 380 AFLGRFGEETEDEYCTICTGSLDGVLKMW 408
           A     G+      C + +GS DG + +W
Sbjct: 519 AL----GD------CEVVSGSEDGKIYLW 537

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Required for the inactivation of zip1 via ubiquitination.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 15/162 (9%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS 252
           H GP+ SI  N  D  L+S S D +IKVW ++  +CI T++ H +P++  V+ +D  L+S
Sbjct: 501 HEGPVESICYN--DQYLFSGSSDHSIKVWDLKKLRCIFTLEGHDKPVHT-VLLNDKYLFS 557

Query: 253 ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312
            S D T++VW         L TL    T +       TL +    L+ G  D  I  W  
Sbjct: 558 GSSDKTIKVW--------DLKTLECKYTLESHARAVKTLCISGQYLFSGSNDKTIKVWDL 609

Query: 313 GWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVW 354
             F         L+GHT  V  +  +   + SGS D T RVW
Sbjct: 610 KTFRCNY----TLKGHTKWVTTICILGTNLYSGSYDKTIRVW 647

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 7

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 150/354 (42%), Gaps = 72/354 (20%)

Query: 104  FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDR--VYAAYGDGKIRVWRS-- 159
             I + S  N IR+W++P  +    L A  S V A+   HD   +  A  DG I++W S  
Sbjct: 1336 IIASASLDNTIRLWQRPLISPLEVL-AGNSGVYAVSFLHDGSIIATAGADGNIQLWHSQD 1394

Query: 160  -------------------------TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM 194
                                        N  K VK+  + + G A++ LI   +++ K  
Sbjct: 1395 GSLLKTLPGNKAIYGISFTPQGDLIASANADKTVKIWRV-RDGKALKTLIGHDNEVNK-- 1451

Query: 195  GPITSIAINVSDD--TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY 251
                   +N S D  TL SAS D T+K+W + D K  +T++ H++ +  +  + DG ++ 
Sbjct: 1452 -------VNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSPDGKIIA 1504

Query: 252  SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW- 310
            SAS D T+R+W  +  S N    LI +L A    V ++    D  +L     D  +  W 
Sbjct: 1505 SASADKTIRLWDSF--SGN----LIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWR 1558

Query: 311  -HKGWFSAQLQYGGALQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAV 367
             H G             GH++ V     +    Y+ S S D T ++W  + DG   +L  
Sbjct: 1559 SHDGHLLH------TFSGHSNVVYSSSFSPDGRYIASASEDKTVKIW--QIDGH--LLTT 1608

Query: 368  LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLN 421
            L  H+  +  AI     F  + +    T+ +GSLD   K+WR    ++    +N
Sbjct: 1609 LPQHQAGVMSAI-----FSPDGK----TLISGSLDTTTKIWRFDSQQAKTSQMN 1653

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P42527|MHCKA_DICDI Myosin heavy chain kinase A OS=Dictyostelium discoideum GN=mhkA PE=1 SV=2

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 30/218 (13%)

Query: 193  HMGPITSIAINVSDDTLYSASLDKTIKVWRIR--DSKCIETIQAHSEPINALVVADDGVL 250
            H   I SIA N   + ++++S D TIKV  IR  ++KCIET+  H+  +N  VVA++  L
Sbjct: 911  HRKSIESIACN--SNYIFTSSPDNTIKVHIIRSGNTKCIETLVGHTGEVNC-VVANEKYL 967

Query: 251  YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW 310
            +S S D T++VW    + E +    + T   KY  +KTL L+     L+ G  D  I+ W
Sbjct: 968  FSCSYDKTIKVWDLSTFKEIKSFEGVHT---KY--IKTLALS--GRYLFSGGNDQIIYVW 1020

Query: 311  HKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG 370
                 S        +QGH   V+ L   A+Y+ S S D+  ++W        + +  L G
Sbjct: 1021 DTETLSMLFN----MQGHEDWVLSLHCTASYLFSTSKDNVIKIWDL---SNFSCIDTLKG 1073

Query: 371  HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW 408
            H   +   +          +D Y  + +GS D  +K+W
Sbjct: 1074 HWNSVSSCVV---------KDRY--LYSGSEDNSIKVW 1100

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Requires autophosphorylation for activity.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 7

>sp|Q9VZF4|FBXW7_DROME F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster GN=ago PE=1 SV=1

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 119/279 (42%), Gaps = 53/279 (18%)

Query: 134  MVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH 193
            ++  ++ S +R+ +   D  ++VW +                 G  +R L+        H
Sbjct: 997  VITCLQFSGNRIVSGSDDNTLKVWSAV---------------NGKCLRTLV-------GH 1034

Query: 194  MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA 253
             G + S  +  S + + S S D+T+KVW +    C+ T+Q H+  +  + +    V+ S 
Sbjct: 1035 TGGVWSSQM--SGNIIISGSTDRTLKVWDMDSGACVHTLQGHTSTVRCMHLHGSKVV-SG 1091

Query: 254  SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG 313
            S DAT+RVW       + LH L+  L A         +  D  L+  G  D  +  WH  
Sbjct: 1092 SRDATLRVWD--IEQGSCLHVLVGHLAA------VRCVQYDGKLIVSGAYDYMVKIWHP- 1142

Query: 314  WFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ-DGRHTMLAVLVGHR 372
                + +    LQGHT+ V  L     +V+SGS D++ RVW  E  + +HT    L+GH+
Sbjct: 1143 ---ERQECLHTLQGHTNRVYSLQFDGLHVVSGSLDTSIRVWDVETGNCKHT----LMGHQ 1195

Query: 373  GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411
                             E     + +G+ D  +K+W +T
Sbjct: 1196 S-----------LTSGMELRQNILVSGNADSTVKVWDIT 1223

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins (By similarity). Involved in the degradation of cyclin E and dm/Myc. Required for endocycles, but not mitosis in follicle cell epithelium.

Drosophila melanogaster (taxid: 7227)

>sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 26/216 (12%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS 252
           H G +  + +   +  + S S D T++VW +   +CI+T+  H E +  L  A+ G++ +
Sbjct: 261 HTGSV--LCLQYDNRVIISGSSDATVRVWDVETGECIKTLIHHCEAVLHLRFAN-GIMVT 317

Query: 253 ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312
            S D ++ VW      +  +  +++   A  + V       DD  +     D  I    K
Sbjct: 318 CSKDRSIAVWDMVSPRDITIRRVLVGHRAAVNVVD-----FDDRYIVSASGDRTI----K 368

Query: 313 GWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR 372
            W    L++   L GH   + CL      V+SGS+D+T R+W          L VL GH 
Sbjct: 369 VWSMDTLEFVRTLAGHRRGIACLQYRGRLVVSGSSDNTIRLWDIHSG---VCLRVLEGHE 425

Query: 373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW 408
             +RC      RF E+       I +G+ DG +K+W
Sbjct: 426 ELVRCI-----RFDEK------RIVSGAYDGKIKVW 450

Functions cell autonomously to negatively regulate cell cycle progression. Required to restrain cell proliferation in response to developmental cues. Probably recognizes and binds to some proteins and promotes their ubiquitination and degradation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q23256|YH92_CAEEL Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=4 SV=1

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 159/392 (40%), Gaps = 54/392 (13%)

Query: 29  SISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPT-AAAGSSSPETSSSYRCISS 87
           S+ TK    +T P +P   + P S  T  ++ PR P  PT +++G +    +  +  + +
Sbjct: 151 SVRTKSAEGTTGPIAPSITTKPTS--TIQVAPPRDPVAPTTSSSGITKKPENGEFSLVKT 208

Query: 88  VL--KKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRV 145
           +    K   ++  +    ++ TGS    I++W   + T    L +    +     S +  
Sbjct: 209 ISGHTKSVSVIKFSYCGKYLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQ 268

Query: 146 YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205
           + A             D  VK   + +    G  +R        M  H   +   + N  
Sbjct: 269 FIASASD---------DTTVKIFDVIS----GACLRT-------MRGHTNYVFCCSFNPQ 308

Query: 206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRR 264
              + SA  D+T++VW  +   C++ I AHS+PI ++    DG  + ++S D  +RVW  
Sbjct: 309 SSLIASAGFDETVRVWDFKTGLCVKCIPAHSDPITSISYNHDGNTMATSSYDGCIRVWDA 368

Query: 265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA 324
              S + L TL+ T    ++PV  +  + +   L     D  +  W     +  L+Y   
Sbjct: 369 --ASGSCLKTLVDT---DHAPVTFVCFSPNGKYLLSAQLDSSLKLWDPKK-AKPLKY--- 419

Query: 325 LQGHTHAVMCL-----ASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAI 379
             GH +   CL       +  ++ISGS D    VW+ +      ++ +L GH  P+    
Sbjct: 420 YNGHKNKKYCLFANMSVPLGKHIISGSEDGRILVWSIQ---TKQIVQILEGHTTPV---- 472

Query: 380 AFLGRFGEETEDEYCTICTGSL--DGVLKMWR 409
                   ++      I +G L  D V+++WR
Sbjct: 473 -----LATDSHPTLNIIASGGLEPDNVIRIWR 499

Caenorhabditis elegans (taxid: 6239)

>sp|Q61FW2|SEL10_CAEBR F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 130/320 (40%), Gaps = 47/320 (14%)

Query: 95  ILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYG--DG 152
           I C+ + N  + TGSD N +++W   +      L   +  V   ++S    Y   G  D 
Sbjct: 261 ITCMQIHNDLLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQCGRYIVSGSTDR 320

Query: 153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA 212
            ++VWR+  D  + H                      +  H   +  +A+  ++ TL + 
Sbjct: 321 TVKVWRAE-DGFLLHT---------------------LQGHTSTVRCMAM--ANTTLVTG 356

Query: 213 SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQL 272
           S D T++VW I     + T+Q H   +   V  D  ++ S   D TV++W    +S   L
Sbjct: 357 SRDCTLRVWDIETGLHVRTLQGHQAAVRC-VQFDGNIVVSGGYDFTVKIWDA--FSGKCL 413

Query: 273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV 332
            TLI       + V +L    +  ++  G  D  I  W       Q +    L GHT   
Sbjct: 414 RTLI----GHSNRVYSLLYESERSIVCSGSLDTSIRVWDFSRPEGQ-ELIAFLSGHTSLT 468

Query: 333 MCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDE 392
             +    N ++S +ADS  RVW   +    T + +L GHR  I  ++ + GR        
Sbjct: 469 SGMQLRGNILVSCNADSHVRVWDIYEG---TCIHILSGHRSAI-TSLQWFGR-------- 516

Query: 393 YCTICTGSLDGVLKMWRVTR 412
              + T S DG +K+W + R
Sbjct: 517 -GLVATSSDDGSVKLWDIER 535

Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q93794|SEL10_CAEEL F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3

 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 134/333 (40%), Gaps = 53/333 (15%)

Query: 86  SSVLK--KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD 143
           S+VL+  +D  I C+ + +  + TGSD N +++W   +      L   T  V   ++S  
Sbjct: 248 SAVLRGHEDHVITCMQIHDDVLVTGSDDNTLKVWCIDKGEVMYTLVGHTGGVWTSQISQC 307

Query: 144 RVYAAYG--DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA 201
             Y   G  D  ++VW ST D  + H                      +  H   +  +A
Sbjct: 308 GRYIVSGSTDRTVKVW-STVDGSLLHT---------------------LQGHTSTVRCMA 345

Query: 202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRV 261
           +  S   L + S D T++VW +   + + T+  H   +   V  D   + S   D TV++
Sbjct: 346 MAGS--ILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRC-VQFDGTTVVSGGYDFTVKI 402

Query: 262 WRRYFYSENQLHT--LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL 319
           W          HT   I TLT   + V +L    +  ++  G  D  I  W       Q 
Sbjct: 403 W--------NAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQ- 453

Query: 320 QYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAI 379
           +    LQGHT     +    N ++S +ADS  RVW   +    T + +L GHR     AI
Sbjct: 454 ECVALLQGHTSLTSGMQLRGNILVSCNADSHVRVWDIHEG---TCVHMLSGHRS----AI 506

Query: 380 AFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412
             L  FG         + T S DG +K+W + R
Sbjct: 507 TSLQWFGRNM------VATSSDDGTVKLWDIER 533

Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
297743237	923	unnamed protein product [Vitis vinifera]	0.942	0.443	0.678	1e-160
225442555	427	PREDICTED: uncharacterized WD repeat-con	0.958	0.974	0.672	1e-159
356547388	441	PREDICTED: uncharacterized WD repeat-con	0.976	0.961	0.637	1e-154
449466885	450	PREDICTED: notchless protein homolog 1-l	0.988	0.953	0.626	1e-152
357454851	436	WD repeat-containing protein [Medicago t	0.976	0.972	0.622	1e-147
255549900	333	F-box and wd40 domain protein, putative	0.767	1.0	0.737	1e-145
224070941	239	predicted protein [Populus trichocarpa]	0.550	1.0	0.717	2e-99
356557285	262	PREDICTED: zinc finger CCCH domain-conta	0.576	0.954	0.606	7e-77
296081858	448	unnamed protein product [Vitis vinifera]	0.801	0.776	0.375	4e-63
359476038	400	PREDICTED: uncharacterized WD repeat-con	0.790	0.857	0.376	3e-62

>gi|297743237|emb|CBI36104.3| unnamed protein product [Vitis vinifera]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/426 (67%), Positives = 333/426 (78%), Gaps = 17/426 (3%)

Query: 2   SSLDSPN----PSFAIRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPISL---- 53
           SS+DSPN    PSFAIR+ T      + FLRSISTKEPSFS  P++P R SS        
Sbjct: 3   SSIDSPNSPQCPSFAIRDETH-----NRFLRSISTKEPSFSELPHTPSRLSSGSLSSPCH 57

Query: 54  HTSPL-SSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGNGFIYTGSDSN 112
           HT+ L SSPRH F PT           +S+RC+SSVLKKDGQIL IA  NG +YTGS++N
Sbjct: 58  HTASLPSSPRHSFAPTKLKLDHD-HLPTSHRCVSSVLKKDGQILSIAASNGLVYTGSETN 116

Query: 113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLAT 172
           ++R+WK PEFTECG+LK K  MVVA+EVS+DRVYAAY D KIRVWR TWD   KHV+LAT
Sbjct: 117 LVRVWKLPEFTECGQLKTKACMVVALEVSNDRVYAAYADAKIRVWRRTWDGAPKHVRLAT 176

Query: 173 IPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI 232
           IP+TG  VR  I GKDKMMKHMG ITS+AIN+SDD LYSASLDKT+KVWRI D KCIETI
Sbjct: 177 IPRTGIYVRGYISGKDKMMKHMGAITSLAINISDDILYSASLDKTVKVWRISDHKCIETI 236

Query: 233 QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT 292
           QAH++P+NA+VVADDGVLY+ASDDATVRVWRR F S ++ H+L +TL AK SPVKTL+LT
Sbjct: 237 QAHTDPVNAIVVADDGVLYTASDDATVRVWRRNFCSGDRPHSLTVTLPAKNSPVKTLSLT 296

Query: 293 LDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSR 352
            D  +LYGGCTDGYIHYWHKGWFS QLQYGGALQGHTHAVMCLASV+NYVISGSADST R
Sbjct: 297 GDGAVLYGGCTDGYIHYWHKGWFSGQLQYGGALQGHTHAVMCLASVSNYVISGSADSTCR 356

Query: 353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412
           VW REQDG+H  LAVL GHRGP+RC      R  ++ ED  C+ICTGSLDG+LK+W V+ 
Sbjct: 357 VWTREQDGQHKCLAVLQGHRGPVRCVSVLPARARDDGEDG-CSICTGSLDGILKVWHVS- 414

Query: 413 PKSSCG 418
           PK + G
Sbjct: 415 PKGNAG 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442555|ref|XP_002279039.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466 [Vitis vinifera]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 291/433 (67%), Positives = 336/433 (77%), Gaps = 17/433 (3%)

Query: 2   SSLDSPN----PSFAIRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPISL---- 53
           SS+DSPN    PSFAIR+ T      + FLRSISTKEPSFS  P++P R SS        
Sbjct: 3   SSIDSPNSPQCPSFAIRDETH-----NRFLRSISTKEPSFSELPHTPSRLSSGSLSSPCH 57

Query: 54  HTSPL-SSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGNGFIYTGSDSN 112
           HT+ L SSPRH F PT           +S+RC+SSVLKKDGQIL IA  NG +YTGS++N
Sbjct: 58  HTASLPSSPRHSFAPTKLKLDHD-HLPTSHRCVSSVLKKDGQILSIAASNGLVYTGSETN 116

Query: 113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLAT 172
           ++R+WK PEFTECG+LK K  MVVA+EVS+DRVYAAY D KIRVWR TWD   KHV+LAT
Sbjct: 117 LVRVWKLPEFTECGQLKTKACMVVALEVSNDRVYAAYADAKIRVWRRTWDGAPKHVRLAT 176

Query: 173 IPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI 232
           IP+TG  VR  I GKDKMMKHMG ITS+AIN+SDD LYSASLDKT+KVWRI D KCIETI
Sbjct: 177 IPRTGIYVRGYISGKDKMMKHMGAITSLAINISDDILYSASLDKTVKVWRISDHKCIETI 236

Query: 233 QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT 292
           QAH++P+NA+VVADDGVLY+ASDDATVRVWRR F S ++ H+L +TL AK SPVKTL+LT
Sbjct: 237 QAHTDPVNAIVVADDGVLYTASDDATVRVWRRNFCSGDRPHSLTVTLPAKNSPVKTLSLT 296

Query: 293 LDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSR 352
            D  +LYGGCTDGYIHYWHKGWFS QLQYGGALQGHTHAVMCLASV+NYVISGSADST R
Sbjct: 297 GDGAVLYGGCTDGYIHYWHKGWFSGQLQYGGALQGHTHAVMCLASVSNYVISGSADSTCR 356

Query: 353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412
           VW REQDG+H  LAVL GHRGP+RC      R  ++ ED  C+ICTGSLDG+LK+W V+ 
Sbjct: 357 VWTREQDGQHKCLAVLQGHRGPVRCVSVLPARARDDGEDG-CSICTGSLDGILKVWHVS- 414

Query: 413 PKSSCGHLNKTNG 425
           PK + G  +  NG
Sbjct: 415 PKGNAGRRSPQNG 427

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547388|ref|XP_003542094.1| PREDICTED: uncharacterized WD repeat-containing protein all2124-like [Glycine max]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/444 (63%), Positives = 332/444 (74%), Gaps = 20/444 (4%)

Query: 3   SLDSPNP--SFAIRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPI---SLHTSP 57
           S  SP+P  SFA R ++ T    S  LRS STKE  F+   +SPPR S P    SL  SP
Sbjct: 4   SAKSPDPTASFAFRSSSTT-PPQSNLLRSHSTKETPFTNLIHSPPRLSCPTLSRSLQNSP 62

Query: 58  LSSPRH-----PFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVG-NGFIYTGSDS 111
           L   R                S P+T+  Y C SSVL+ DGQIL I++  NG +YTGSDS
Sbjct: 63  LHHRRQFSPPPSPPSPTKLSDSDPQTT--YHCASSVLRNDGQILSISLSSNGLVYTGSDS 120

Query: 112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLA 171
           N++R+WK PEFTECG+L+ K   VVA++VS+D VYAAYGDGKIRVWR TWD  +KHV+LA
Sbjct: 121 NLVRVWKLPEFTECGQLRTKACRVVALQVSNDTVYAAYGDGKIRVWRRTWDKVLKHVRLA 180

Query: 172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET 231
           TIPKT G VR+ I GKDK M H G ITS+ IN ++D LY+ASLDKT+KVWRI D KCIET
Sbjct: 181 TIPKTLGYVRSYIAGKDKTM-HKGLITSMVINTAEDILYTASLDKTVKVWRISDMKCIET 239

Query: 232 IQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTL 291
           I+AH+EPINA++VADDGVLY+ASDDATVRVWRR F S +Q H+L +TL AKYSPVK LTL
Sbjct: 240 IKAHTEPINAIIVADDGVLYTASDDATVRVWRRNFCSHDQPHSLTVTLHAKYSPVKALTL 299

Query: 292 TLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTS 351
           T D G+LYGGCTDGYIHYWHKGWF+ QLQYGG++QGHTHAV+CLASVA YV+SGSADSTS
Sbjct: 300 TPDAGILYGGCTDGYIHYWHKGWFAGQLQYGGSIQGHTHAVLCLASVAKYVVSGSADSTS 359

Query: 352 RVWAREQDGRHTMLAVLVGHRGPIRCAIAFL-GRFGEETEDEYCTICTGSLDGVLKMWRV 410
           RVWAREQDG+HT LAVLVGHRGPIRC  AFL GR  E+ ED  CTICTGSLDGV K+WR+
Sbjct: 360 RVWAREQDGQHTCLAVLVGHRGPIRCVTAFLGGRLLEDNEDSCCTICTGSLDGVFKLWRL 419

Query: 411 TRPKSSCGHLNKTNGHEYFELQEG 434
           T       H +   G +YF+L +G
Sbjct: 420 THNN----HCSSPPGAKYFDLCKG 439

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466885|ref|XP_004151156.1| PREDICTED: notchless protein homolog 1-like [Cucumis sativus] gi|449525874|ref|XP_004169941.1| PREDICTED: notchless protein homolog 1-like [Cucumis sativus]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 283/452 (62%), Positives = 343/452 (75%), Gaps = 23/452 (5%)

Query: 1   MSSLDSP-----NPSFAIRETTPTGTAPST-----FLRSISTKEPSFSTFPYSPPRFSS- 49
           M+SL+SP     N SF+I +T  + T  S+       RSISTKEPSFS FP++PP  ++ 
Sbjct: 1   MASLNSPDSSPPNISFSINQTRKSTTTSSSATGHRLYRSISTKEPSFSQFPFTPPHLNNN 60

Query: 50  ----PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGNGFI 105
               P SLH SP SSP HP    AAA  S  +   S+RC+SSVLKKDGQIL IA+ N  +
Sbjct: 61  CPSLPQSLHNSPTSSPLHPTAAAAAAKLS--DHLISHRCVSSVLKKDGQILSIAMFNDIL 118

Query: 106 YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGV 165
           YTGSDSN++RIWK P+FTECG+LK K SM VA++VSHD+VYAAY D KIRVWR +WD G+
Sbjct: 119 YTGSDSNLVRIWKLPDFTECGQLKTKASMAVALQVSHDKVYAAYSDCKIRVWRRSWDRGL 178

Query: 166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD 225
           KH +LATIP TG  VR+ I GKDKMMKHMGPITS+AIN+SDD LYS+SLDK++KVWRI D
Sbjct: 179 KHSRLATIPATGSYVRSYISGKDKMMKHMGPITSLAINISDDILYSSSLDKSVKVWRISD 238

Query: 226 SKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYF-YSENQLHTLILTLTAKYS 284
            KCIETIQAHSEPINA++ + DG+LYSASDDAT++VWRR F  S++  H+L++TL A +S
Sbjct: 239 FKCIETIQAHSEPINAIIASADGLLYSASDDATIKVWRRNFSRSDHPPHSLVITLPANFS 298

Query: 285 PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVIS 344
           PVKTLTL  +  LLYGGC+DGY+H+W KGWFS QLQYGGALQGHTHAVMCLASV  YV+S
Sbjct: 299 PVKTLTLDTNSTLLYGGCSDGYLHFWLKGWFSGQLQYGGALQGHTHAVMCLASVGKYVVS 358

Query: 345 GSADSTSRVWAREQ-DGR-HTMLAVLVGHRGPIRCAIAFLG---RFGEETEDEYCTICTG 399
           GSADST RVWAR++ D + HT LAVLVGHRGP+RC  AF G       E  +  CTIC+G
Sbjct: 359 GSADSTCRVWARDEVDCQLHTCLAVLVGHRGPVRCVAAFFGSGSEEAVEEGEGGCTICSG 418

Query: 400 SLDGVLKMWRVTRPKSSCGHLNKTNGHEYFEL 431
           SLDGVLK+WRVT   +   + +  NG +YF+L
Sbjct: 419 SLDGVLKVWRVTCTSNGTPNQDLQNGTDYFDL 450

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454851|ref|XP_003597706.1| WD repeat-containing protein [Medicago truncatula] gi|355486754|gb|AES67957.1| WD repeat-containing protein [Medicago truncatula]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 274/440 (62%), Positives = 332/440 (75%), Gaps = 16/440 (3%)

Query: 4   LDSPN-PSFAIRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPR 62
           +DSPN P FA   +T      S   RS STKE  FS    S P FS   SL  SP+SSP+
Sbjct: 1   MDSPNSPDFAFTSSTTVHNNNSNIFRSRSTKETPFSKL--SCPTFSR--SLQNSPVSSPQ 56

Query: 63  HPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGN-GFIYTGSDSNVIRIWKQPE 121
           H + PT  +   S +T+  Y C SSVL+ DGQI  IA+ + G +YTGSDSNV+R WK PE
Sbjct: 57  HHYFPTKLSDFESLQTT--YHCASSVLRNDGQITSIALSSSGLLYTGSDSNVVRCWKLPE 114

Query: 122 FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAV 180
           FTECG+LK K S VVA+EVS+D VYAAYGDGKIRVW   WDN V KHV+ ATIPKT G V
Sbjct: 115 FTECGQLKTKASKVVAIEVSNDTVYAAYGDGKIRVWTIIWDNKVLKHVRSATIPKTLGYV 174

Query: 181 RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN 240
           R+ I GKDK MKH   ITS+AIN ++D +Y+ASLDKT+KVWRI D KCIETI+AH +PIN
Sbjct: 175 RSYIAGKDKTMKHKRLITSMAINTAEDIIYTASLDKTVKVWRISDLKCIETIKAHPDPIN 234

Query: 241 ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-GLLY 299
            ++V+DDGVLY+ASDDAT++VWRR F S +Q H+L +TL AKYSPVK LTLT +D G+LY
Sbjct: 235 DMIVSDDGVLYTASDDATIKVWRRNFCSHDQPHSLTVTLHAKYSPVKALTLTNNDGGILY 294

Query: 300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD 359
           GGCTDGYIHYW KGWF+ QLQYGG++QGHTHAV+CLASVA YV+SGSADSTSRVW+RE+D
Sbjct: 295 GGCTDGYIHYWLKGWFAGQLQYGGSIQGHTHAVLCLASVAKYVVSGSADSTSRVWSRERD 354

Query: 360 GRHTMLAVLVGHRGPIRCAIAFLG--RFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC 417
           G+H  LAVL GHRGPIR   AFLG     E+  ++ CT+CTGSLDGVLK+WRVT  K++ 
Sbjct: 355 GQHVCLAVLAGHRGPIRSVTAFLGGCLVKEDDNEDSCTVCTGSLDGVLKLWRVTLTKNAP 414

Query: 418 GH---LNKTNGHEYFELQEG 434
            +   L++  G++YFEL +G
Sbjct: 415 DNNQCLSQV-GNKYFELYKG 433

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549900|ref|XP_002516001.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223544906|gb|EEF46421.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/335 (73%), Positives = 288/335 (85%), Gaps = 2/335 (0%)

Query: 98  IAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVW 157
           +A+ NG IYTGS +N+IR+WK PEFTECG+LK K SM VA+ VSHDRVYAAYGDGKIRVW
Sbjct: 1   MAISNGVIYTGSSNNLIRMWKMPEFTECGQLKTKASMAVALGVSHDRVYAAYGDGKIRVW 60

Query: 158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKT 217
           R TWD   KHV+LATIPKTGG VR+ I GKDK MKH+GPITS+AIN+SDDTLYSASLDKT
Sbjct: 61  RRTWDGSFKHVRLATIPKTGGYVRSYIAGKDKTMKHLGPITSLAINISDDTLYSASLDKT 120

Query: 218 IKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLIL 277
           +K+WR+ D +CIETIQAHSEPINA+VVADDGVLY+ASDDATV+VWRR F + +  H+LI+
Sbjct: 121 VKIWRLSDLRCIETIQAHSEPINAIVVADDGVLYTASDDATVKVWRRNFCTGDWPHSLIV 180

Query: 278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS 337
            L AK+SPVKTLTLT D+ +LYGGCTDGYIHYW +G FS QLQYGGALQGHTHAVMC+A+
Sbjct: 181 VLPAKFSPVKTLTLTADNRILYGGCTDGYIHYWLRGGFSGQLQYGGALQGHTHAVMCIAN 240

Query: 338 VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC 397
           V NYVISGSADS+SRVW RE DG+HT LAVL+GHRGP+RC  A LGR G++ E+E CTIC
Sbjct: 241 VGNYVISGSADSSSRVWLRESDGQHTCLAVLIGHRGPVRCVTAGLGRLGDDNEEE-CTIC 299

Query: 398 TGSLDGVLKMWRVTRPKSSCGHLNKTNGHEYFELQ 432
           TGSLDGV+K+WRVTR     G L+ T+G+EYFELQ
Sbjct: 300 TGSLDGVIKLWRVTRTSKDSGPLS-TSGYEYFELQ 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070941|ref|XP_002303299.1| predicted protein [Populus trichocarpa] gi|222840731|gb|EEE78278.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 173/241 (71%), Positives = 206/241 (85%), Gaps = 2/241 (0%)

Query: 191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVL 250
           MKH+GPITS+AIN+SDD +YSASLD+T+KVWRI D KCIETIQAH EP+NA+VVADDG+L
Sbjct: 1   MKHVGPITSLAINLSDDIIYSASLDRTVKVWRISDLKCIETIQAHLEPVNAVVVADDGIL 60

Query: 251 YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW 310
           Y+ASDDA++RVWRR F S    H+L +TL++K+SPV+TLTLT D+G+LYGGCTDGYIHYW
Sbjct: 61  YTASDDASIRVWRRNFCSGEWPHSLTVTLSSKHSPVRTLTLTSDNGVLYGGCTDGYIHYW 120

Query: 311 HKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG 370
            KGWF  QLQYGGALQGHTHA+MC+A+V+ YVISGSADSTSRVW R+ DG+HT LAVLVG
Sbjct: 121 LKGWFPGQLQYGGALQGHTHAIMCMANVSKYVISGSADSTSRVWVRDSDGQHTCLAVLVG 180

Query: 371 HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGHEYFE 430
           HRGPIRC  AFLGR  ++ ED  CTICTGSLDGVLK+WRVTR     G L++ N  +YF+
Sbjct: 181 HRGPIRCVTAFLGRLEDDNEDG-CTICTGSLDGVLKLWRVTRTNKESGSLSQ-NASDYFD 238

Query: 431 L 431
           L
Sbjct: 239 L 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557285|ref|XP_003546948.1| PREDICTED: zinc finger CCCH domain-containing protein 17-like [Glycine max]

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 159/262 (60%), Positives = 191/262 (72%), Gaps = 12/262 (4%)

Query: 1   MSSLDSPNP--SFAIRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPI---SLHT 55
           M   +SP+P  SFA R TT T T  S FLRS STKE  FS F +SPPR S P    SL  
Sbjct: 1   MDDSNSPDPTASFAFRSTTTTTTPQSNFLRSHSTKETPFSNFIHSPPRLSCPTLSRSLQN 60

Query: 56  SPLSSPRH------PFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVG-NGFIYTG 108
           SP+SSP H      P +P +    S  E  ++Y C SSVL+ DGQIL IA+  NG +YTG
Sbjct: 61  SPISSPLHHRQFSPPPSPPSPTKLSDSEPQTTYHCASSVLRNDGQILSIALSSNGLVYTG 120

Query: 109 SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHV 168
           SDSN++R+WK PEFTECG+L+ K   VVA+EVS+D VYAAYGDGKIRVWR TWD  +KHV
Sbjct: 121 SDSNLVRVWKLPEFTECGQLRTKACRVVALEVSNDTVYAAYGDGKIRVWRRTWDKVLKHV 180

Query: 169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC 228
           +LATIPKT G VR+ I GKDK +   G IT++AIN ++D LY+ASLDKT+KVWRI D KC
Sbjct: 181 RLATIPKTLGYVRSYIAGKDKTVSKFGLITAMAINTAEDILYTASLDKTVKVWRISDLKC 240

Query: 229 IETIQAHSEPINALVVADDGVL 250
           IETI+AH+EPINA++VADDGVL
Sbjct: 241 IETIKAHTEPINAIIVADDGVL 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081858|emb|CBI20863.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 210/370 (56%), Gaps = 22/370 (5%)

Query: 53  LHTSP------LSSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGNGFIY 106
           LH SP      L  P  P +P   +   +P  S  Y CI+S+ + +G I  IAV  G ++
Sbjct: 40  LHLSPTRSRMTLMPPPSPESPWTLSPLHTPSPSLLYHCIASLHRHEGNIYSIAVSRGLVF 99

Query: 107 TGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVK 166
           TGS+S+ +R+W+QP+  E G LKA +  V A+    + ++  + D KIR+W  T  +  +
Sbjct: 100 TGSESSRVRVWRQPDCIERGYLKASSGEVRAILGYGNMLFTTHRDNKIRMWNVTNSDSFR 159

Query: 167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS 226
             K++T+P+        I  +    KH   I+ +A   ++  LY+ S D+T+K WR+ D 
Sbjct: 160 SKKVSTLPRRSSL---FIFPRASPQKHKDCISCMAYYHAEGLLYTGSWDRTVKAWRVSDK 216

Query: 227 KCIETIQAHSEPINALVV-ADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSP 285
           +C+++  AH + +NA+VV  +DG L++ S D +V+VWRR +   +  HTL +TL  + SP
Sbjct: 217 QCVDSFVAHEDNVNAIVVNQEDGCLFTCSSDGSVKVWRRLYVESS--HTLTMTLKFQPSP 274

Query: 286 VKTL--TLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI 343
           V  L  +L+L+   LY G +DG+I++W K   S +  +GG LQGH  AV+CL +V   V 
Sbjct: 275 VNALALSLSLNTCFLYSGSSDGFINFWEKEKMSGRFNHGGFLQGHRFAVLCLVAVEKLVF 334

Query: 344 SGSADSTSRVWAREQDG-RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC--TICTGS 400
           SGS D+T RVW RE+    H  LAVL GHRGP+RC  A L     E E       + + S
Sbjct: 335 SGSEDTTIRVWRREEGSCYHECLAVLDGHRGPVRCLAACL-----EMEKVVMGFLVYSAS 389

Query: 401 LDGVLKMWRV 410
           LD   K+WR+
Sbjct: 390 LDQTFKVWRI 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476038|ref|XP_002281362.2| PREDICTED: uncharacterized WD repeat-containing protein alr2800-like [Vitis vinifera]

 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 135/359 (37%), Positives = 206/359 (57%), Gaps = 16/359 (4%)

Query: 58  LSSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIW 117
           L  P  P +P   +   +P  S  Y CI+S+ + +G I  IAV  G ++TGS+S+ +R+W
Sbjct: 3   LMPPPSPESPWTLSPLHTPSPSLLYHCIASLHRHEGNIYSIAVSRGLVFTGSESSRVRVW 62

Query: 118 KQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG 177
           +QP+  E G LKA +  V A+    + ++  + D KIR+W  T  +  +  K++T+P+  
Sbjct: 63  RQPDCIERGYLKASSGEVRAILGYGNMLFTTHRDNKIRMWNVTNSDSFRSKKVSTLPRRS 122

Query: 178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE 237
                 I  +    KH   I+ +A   ++  LY+ S D+T+K WR+ D +C+++  AH +
Sbjct: 123 SL---FIFPRASPQKHKDCISCMAYYHAEGLLYTGSWDRTVKAWRVSDKQCVDSFVAHED 179

Query: 238 PINALVV-ADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTL--TLTLD 294
            +NA+VV  +DG L++ S D +V+VWRR +   +  HTL +TL  + SPV  L  +L+L+
Sbjct: 180 NVNAIVVNQEDGCLFTCSSDGSVKVWRRLYVESS--HTLTMTLKFQPSPVNALALSLSLN 237

Query: 295 DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVW 354
              LY G +DG+I++W K   S +  +GG LQGH  AV+CL +V   V SGS D+T RVW
Sbjct: 238 TCFLYSGSSDGFINFWEKEKMSGRFNHGGFLQGHRFAVLCLVAVEKLVFSGSEDTTIRVW 297

Query: 355 AREQDG-RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC--TICTGSLDGVLKMWRV 410
            RE+    H  LAVL GHRGP+RC  A L     E E       + + SLD   K+WR+
Sbjct: 298 RREEGSCYHECLAVLDGHRGPVRCLAACL-----EMEKVVMGFLVYSASLDQTFKVWRI 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
TAIR|locus:2066276	465	AT2G26490 "AT2G26490" [Arabido	0.737	0.688	0.360	8.9e-54
TAIR|locus:2074825	469	AT3G50390 "AT3G50390" [Arabido	0.907	0.840	0.312	5.1e-51
TAIR|locus:2116194	495	AT4G34380 "AT4G34380" [Arabido	0.741	0.650	0.339	2.5e-49
TAIR|locus:2010157	471	AT1G49450 "AT1G49450" [Arabido	0.741	0.683	0.320	5.2e-49
TAIR|locus:2085929	473	AT3G18950 "AT3G18950" [Arabido	0.753	0.691	0.321	8.5e-49
TAIR|locus:2015423	351	AT1G47610 "AT1G47610" [Arabido	0.737	0.911	0.307	1.6e-45
TAIR|locus:2024031	418	AT1G24530 "AT1G24530" [Arabido	0.716	0.744	0.308	5.3e-40
TAIR|locus:2032452	415	AT1G24130 "AT1G24130" [Arabido	0.622	0.650	0.319	1.9e-35
TAIR|locus:2083710	415	AT3G51930 "AT3G51930" [Arabido	0.741	0.775	0.290	3.3e-31
TAIR|locus:2170061	388	AT5G50120 "AT5G50120" [Arabido	0.564	0.631	0.298	1.3e-29

TAIR|locus:2066276 AT2G26490 "AT2G26490" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 122/338 (36%), Positives = 183/338 (54%)

Query:    85 ISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDR 144
             I S+++++G I  +A     +YTGSDS  IR+WK     E    K  + +V A+ +S ++
Sbjct:    89 IGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKN--LKEFSAFKCNSGLVKAIVISGEK 146

Query:   145 VYAAYGDGKIRVWRSTWDNGVKHVKLATIP------KTGGAVRNLI-VGKDKM---MKHM 194
             ++  + DGKIRVW+ +  N   H +  T+P      K     RN + V K +    +KH 
Sbjct:   147 IFTGHQDGKIRVWKVSPKNQSLHKRSGTLPTLKDIFKASLKPRNYVEVKKHRTALWIKHA 206

Query:   195 GPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSAS 254
               ++ +++N     LYSAS D+TIKVWRI DSKC+E+I AH + +N++V   + +++S S
Sbjct:   207 DAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKCLESIPAHDDAVNSVVSTTEAIVFSGS 266

Query:   255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGW 314
              D TV+ W+R    +   HTL+ TLT + S V                    +++W +  
Sbjct:   267 ADGTVKAWKRDQQGKYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGSSDGLVNFWER-- 324

Query:   315 FSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGR-HTMLAVLVGHRG 373
                QL YGG L+GH  AV+CL    + V SGSAD T  VW R  DG  HT L+VL GH G
Sbjct:   325 -EKQLNYGGILKGHKLAVLCLEVAGSLVFSGSADKTICVWKR--DGNIHTCLSVLTGHTG 381

Query:   374 PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411
             P++C      R   E  D+   + +GSLD  +K+W V+
Sbjct:   382 PVKCLAVEADREASERRDKKWIVYSGSLDKSVKVWGVS 419

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 131/419 (31%), Positives = 203/419 (48%)

Query:    10 SFAIRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPISLHTSP--LSSPRHPFNX 67
             S A  + T   T P   +  I+  + S S    S P   SP S+   P  + SP H    
Sbjct:    15 SQAFTKLTKVETIPDPDIYDITYVDISPSEGS-SSPLSKSPWSVQVDPSAVDSPYHSVKV 73

Query:    68 XXXXXXXXXXXXXXYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGR 127
                              + S+++++G I  +A     +YTGSDS  IR+WK     E   
Sbjct:    74 TTDTTKEKSTNHSPNILLGSLVREEGHIYSLATSGDLLYTGSDSKNIRVWKN--HVEFSS 131

Query:   128 LKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK 187
              K+ + +V A+ ++ D+++  + DGKIRVW++       H ++ T+P     +RN IV  
Sbjct:   132 FKSNSGLVKAIVLAGDKIFTGHQDGKIRVWKAASKESNVHRRVGTMPNLLDYIRNSIVPS 191

Query:   188 DKM-------------MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA 234
                              +H+  I+ +A++     LYS S DKT KVWR+ D +C+E++ A
Sbjct:   192 SYFNFTRRNRSSAALGFRHLDAISCLALSEDKRLLYSGSWDKTFKVWRVSDLRCVESVNA 251

Query:   235 HSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXX 294
             H + +NA+V   DG++++ S D TV+VWRR   +++  H    TL  +   V        
Sbjct:   252 HEDAVNAVVSGFDGLVFTGSADGTVKVWRREDQAKDTKHFFSETLLKQDCAVTAIAVDQS 311

Query:   295 XXXXXXXXXXXXIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVW 354
                         +++W +      ++ GG L+GH  AV+CL +  N + SGSAD   RVW
Sbjct:   312 ATLVYCGSSDGTVNFWER---ENNMKNGGVLKGHKLAVLCLVAAGNLMFSGSADLGIRVW 368

Query:   355 AR-EQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC-TGSLDGVLKMWRVT 411
              R E  G H  L+VL GH GP++C +A + R  E    E   I  +GSLD  +KMWRV+
Sbjct:   369 RRPEGGGEHVCLSVLTGHAGPVKC-LA-VERDQESVSGERRWIVYSGSLDRSVKMWRVS 425

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116194 AT4G34380 "AT4G34380" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 117/345 (33%), Positives = 181/345 (52%)

Query:    85 ISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDR 144
             I S+++K+G I  +A     +YTGSDS  IR+WK     E    K+ + ++ A+ +  DR
Sbjct:   118 IGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKN--LKEHAGFKSSSGLIKAIVIFGDR 175

Query:   145 VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM----------MKHM 194
             ++  + DGKIR+W+ +     KH ++ T+P     V++ +  K  M           KH 
Sbjct:   176 IFTGHQDGKIRIWKVSKRKPGKHKRVGTLPTFKSMVKSSVNPKHFMEVRRNRNSVKTKHN 235

Query:   195 GPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSAS 254
               ++S++++V    LYS+S D TIKVWRI DSKC+E+I AH + IN+++   D ++++ S
Sbjct:   236 DAVSSLSLDVELGLLYSSSWDTTIKVWRIADSKCLESIHAHDDAINSVMSGFDDLVFTGS 295

Query:   255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGW 314
              D TV+VW+R    +   HTL   L  + + V                    ++YW +  
Sbjct:   296 ADGTVKVWKRELQGKGTKHTLAQVLLKQENAVTALAVKSQSSIVYCGSSDGLVNYWER-- 353

Query:   315 FSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWARE-QDGRHTMLAVLVGHRG 373
              S +   GG L+GH  AV+CL    N ++SGSAD    VW R+  D  H  L+VL GH G
Sbjct:   354 -SKRSFTGGILKGHKSAVLCLGIAGNLLLSGSADKNICVWRRDPSDKSHQCLSVLTGHMG 412

Query:   374 PIRC-AI-----AFLGRFGEETE-DEYCTICTGSLDGVLKMWRVT 411
             P++C A+        G      E D    I +GSLD  +K+WRV+
Sbjct:   413 PVKCLAVEEERACHQGAKASVAEGDRKWIIYSGSLDKSVKVWRVS 457

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010157 AT1G49450 "AT1G49450" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 111/346 (32%), Positives = 185/346 (53%)

Query:    85 ISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD- 143
             I +V++++G +  +A     ++TGSDS  IR+WK  +  +    K+ +  V A+ V+ D 
Sbjct:   127 IGTVVRQEGHVYSLAASGDLLFTGSDSKNIRVWK--DLKDFSGFKSTSGFVKAIVVTRDN 184

Query:   144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAV------RNLI-VGKDK---MMKH 193
             RV+  + DGKIRVWR +  N  K+ ++ ++P     +      RN + V + K    ++H
Sbjct:   185 RVFTGHQDGKIRVWRGSKKNPEKYSRVGSLPTLKEFLTKSVNPRNYVEVRRRKNVLKIRH 244

Query:   194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA 253
                ++ +++N     LYS S DKT+KVWR+ DSKC+E+I+AH + +N +V   D ++++ 
Sbjct:   245 FDAVSCLSLNEDLGLLYSGSWDKTLKVWRLSDSKCLESIEAHDDAVNTVVSGFDDLVFTG 304

Query:   254 SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKG 313
             S D T++VW+R    +   H L+  L  + + V                    +++W + 
Sbjct:   305 SADGTLKVWKREVQGKEMKHVLVQVLMKQENAVTALAVNLTDAVVYCGSSDGTVNFWERQ 364

Query:   314 WFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG 373
              +   L + G + GH  AV+CLA+  + ++SG AD    VW R  DG HT L+VL+ H G
Sbjct:   365 KY---LTHKGTIHGHRMAVLCLATAGSLLLSGGADKNICVWKRNGDGSHTCLSVLMDHEG 421

Query:   374 PIRCAIAFL--------GRFGEETEDEYCTICTGSLDGVLKMWRVT 411
             P++C  A          G  G E  D+   + +GSLD  +K+WRVT
Sbjct:   422 PVKCLAAVEEAEEDHNDGDDGGEKGDQRWIVYSGSLDNSVKVWRVT 467

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 111/345 (32%), Positives = 187/345 (54%)

Query:    85 ISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD- 143
             I +++++DG +  +A     ++TGSDS  IR+WK  +  +    K+ + +V A+ ++ D 
Sbjct:   131 IGTIVRQDGHVYSLAASGDLLFTGSDSKNIRVWK--DLKDHTGFKSTSGLVKAIVITGDN 188

Query:   144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAV------RNLI-VGKDK---MMKH 193
             R++  + DGKIRVWR +      + ++ ++P     +      +N + V + K    ++H
Sbjct:   189 RIFTGHQDGKIRVWRGSKRRTGGYSRIGSLPTLKEFLTKSVNPKNYVEVRRRKNVLKIRH 248

Query:   194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA 253
                ++ +++N     LYS S DKT+KVWR+ DSKC+E+IQAH + IN +    D +L++ 
Sbjct:   249 YDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQAHDDAINTVAAGFDDLLFTG 308

Query:   254 SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKG 313
             S D T++VW+R    +   H L+  L  + + V                    +++W +G
Sbjct:   309 SADGTLKVWKRELQGKGTKHFLVNVLMKQENAVTALAVNITAAVVYCGSSDGTVNFW-EG 367

Query:   314 WFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG 373
                  L +GG L+GH  AV+CLA+  + V+SG AD    VW R  DG H+ L+VL+ H G
Sbjct:   368 --QKYLSHGGTLRGHRLAVLCLAAAGSLVLSGGADKNICVWRRNGDGSHSCLSVLMDHVG 425

Query:   374 PIRC--AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416
             P++C  A+   G    E  D+   + +GSLD  +K+WRVT   S+
Sbjct:   426 PVKCLTAVEDDGEGHREKGDQKWIVYSGSLDKSVKVWRVTESAST 470

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 105/342 (30%), Positives = 182/342 (53%)

Query:    85 ISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD- 143
             +  +++++G I  +A  N  +YTGSD+N IR+WK     E    K+ + +V A+ +S + 
Sbjct:    17 VGEIVREEGHIYSLAATNDLLYTGSDNNYIRVWKN--LNEFSGFKSNSGLVKAIVISREA 74

Query:   144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM----------MKH 193
             +V+  + DGKIRVW+++  N   + +  ++P     +++ +   + +          +KH
Sbjct:    75 KVFTGHQDGKIRVWKTSSKNPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTALWIKH 134

Query:   194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA 253
                ++ +++      LYSAS D+T+KVWRI D KCIE+I+AH + +N++  A+  ++++ 
Sbjct:   135 SDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSVTTAES-LVFTG 193

Query:   254 SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKG 313
             S D TV+VW+R    +   H+L  TL  + S V                    +++W  G
Sbjct:   194 SADGTVKVWKREIRGKRTAHSLFQTLLKQESAV--TALVTSHMAVYSGSSDGAVNFWEMG 251

Query:   314 WFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGR-HTMLAVLVGHR 372
                  L++    + H  AV+C+A+    + SG+AD    VW RE  G+ HT ++VL GH 
Sbjct:   252 -DKKLLKHCEVFKKHRLAVLCIAAAGKLLFSGAADKKICVWRRE--GKVHTCVSVLTGHT 308

Query:   373 GPIRCAIAFLGRFGEETE--DEYCTICTGSLDGVLKMWRVTR 412
             GP++C        GEE +  D    + +GSLD  +K+WRV R
Sbjct:   309 GPVKCLAVVEPSGGEEEDGGDGRLVLYSGSLDKSVKVWRVPR 350

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024031 AT1G24530 "AT1G24530" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 104/337 (30%), Positives = 174/337 (51%)

Query:    95 ILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAK---TSMVVAMEVSHDRVYAAYGD 151
             + C+AV  G+++  S   V  I+ +           +   +  V ++  S ++++ A+ D
Sbjct:    86 VTCLAVNGGYLFAVSGHEV-SIYDRDMCAHLDTFNGQDPFSGTVKSVGFSGEKIFTAHQD 144

Query:   152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM----------MKHMGPITSIA 201
             GKI VW+ T  +G K  +L T+P     +R   + K+ +          ++H   +T++A
Sbjct:   145 GKIGVWKLTAKSGYK--QLTTLPTLNDRLRRFALPKNYVQVRRHKKRLWIEHADAVTALA 202

Query:   202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRV 261
               VSD  +YS S DKT+K+WR  D +C E+I+AH + +NA+ V+ +G +Y+ S D  +RV
Sbjct:   203 --VSDGFIYSVSWDKTLKIWRASDLRCKESIKAHDDAVNAIAVSTNGTVYTGSADRRIRV 260

Query:   262 WRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGWFSAQLQY 321
             W +   +  + HTL+ TL    S V                    I  W +   S  +  
Sbjct:   261 WAKP--TGEKRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRSILVWEREDTSNYMAV 318

Query:   322 GGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF 381
              GAL+GH  A++ L +V++ ++SGSAD T R+W R  D  ++ L VL GH  P++     
Sbjct:   319 RGALRGHDKAILSLFNVSDLLLSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVKS---- 374

Query:   382 LGRFGEETEDEYCTICTGSLDGVLKMWRV--TRPKSS 416
             L    E+  D+  +I +GSLDG +K W+V  T+P +S
Sbjct:   375 LAAVREKELDDVVSIISGSLDGEVKCWKVSVTKPDNS 411

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 95/297 (31%), Positives = 158/297 (53%)

Query:   135 VVAMEVSHDRVYAAYGDGKIRVWRSTWDN---GVKHVKLATIPKTGGAVRNLIVGKDKM- 190
             V ++ +  D++ +A+ D KIRVW+   ++   G K+  +AT+P      + L   K  + 
Sbjct:   120 VKSLVILGDKLISAHQDHKIRVWKIIDESNRRGQKYKCVATLPTMNDRFKTLFSSKSYVE 179

Query:   191 ---------MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ-AHSEPIN 240
                      + H+  ++S+A++     LYSAS D++ K+WR  D KC+++I+ AH + IN
Sbjct:   180 VRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRTSDFKCLDSIEKAHDDAIN 239

Query:   241 ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXX 300
             A+VV+ DG +Y+ S D  ++VW +    +++ H+L+ TLT   S V              
Sbjct:   240 AIVVSKDGFVYTGSADKKIKVWNK----KDKKHSLVATLTKHLSAVNALAISEDGKVLYS 295

Query:   301 XXXXXXIHYWHK--GWFSAQLQYG--GALQGHTHAVMCLASVANYVISGSADSTSRVWAR 356
                   I  W +       +L     GAL+GH  A+MCLA  ++ V+SGSAD + RVW R
Sbjct:   296 GACDRSILVWERLINGDDEELHMSVVGALRGHRKAIMCLAVASDLVLSGSADKSLRVWRR 355

Query:   357 ---EQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV 410
                E++G ++ LAVL GH  P++ ++A      +   D  C + +GSLD  LK+W +
Sbjct:   356 GLMEKEG-YSCLAVLEGHTKPVK-SLAVSVSDSDSNSDYSCMVYSGSLDLSLKVWNL 410

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083710 AT3G51930 "AT3G51930" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 103/355 (29%), Positives = 163/355 (45%)

Query:    82 YRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVS 141
             Y+ ++ +    G +  +A+   F+ + S    I +W+QP+     +       V A+   
Sbjct:    51 YKPLAVLSAHVGSVSSLALCGEFLLSASQGKDIIVWQQPDLKIFAKFGQGDGSVKALVSV 110

Query:   142 HDRVYAAYGDGKIRVWRSTWDNGVKHVKLA-TIPKT----GGAVR--NLIVG----KDKM 190
               +V+ A+ D +IRVW+ +  N     +L  T+P T    G  ++  N +      K   
Sbjct:   111 GSKVFTAHQDSRIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRLW 170

Query:   191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVL 250
             ++H   I+ +A++     +YS S DKT+KVWR+ D KC+E+I+AH + IN LV A DG +
Sbjct:   171 IEHADSISCLAVHAG--IIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLV-AGDGRV 227

Query:   251 YSASDDATVRVW----RRYFYS----ENQLHTLILTLTAKYS-PVKXXXXXXXXXXXXXX 301
             YSAS D  V++W    R+   S     + LH L  TL  +    V               
Sbjct:   228 YSASADGKVKIWGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGG 287

Query:   302 XXXXXIHYWHK----GWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWARE 357
                  +  W K    G F  + + G   +GH  AV+C+  V   V SGSAD +  +W RE
Sbjct:   288 GSDGFVIGWEKKEKEGDFE-EWRLGFETRGHNMAVLCMCVVGEMVCSGSADKSIGLWRRE 346

Query:   358 QDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412
               G      V+ GH GP++C  A     G         + +G LD  L++W V +
Sbjct:   347 VTGMLCKFGVIHGHEGPVKCLQASPNNVGAGF-----MLYSGGLDKSLRVWWVPK 396

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2170061 AT5G50120 "AT5G50120" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 80/268 (29%), Positives = 138/268 (51%)

Query:   164 GVKHVKLATIPKTGGAVRNLIVGKDKM----------MKHMGPITSIAINVSDDTLYSAS 213
             G K++ LAT+P         ++ K+++          + H+  ++ +A++     LYS S
Sbjct:   125 GKKYMHLATMPTISDRFAKCLMPKNQVEIRRHKKASWVHHVDAVSGLALSRDGTLLYSVS 184

Query:   214 LDKTIKVWRIRDSKCIETI-QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSEN-- 270
              D+T+K+WR  D KC+E+   AH + INA+ ++++G +Y+ S D  ++VWR+    EN  
Sbjct:   185 WDRTLKIWRTTDFKCLESFTNAHDDAINAVALSENGDIYTGSSDQRIKVWRKNINEENVK 244

Query:   271 --QLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXX-XIHYWHKGWFSAQLQYGGALQG 327
               + H+L+  L+   S +                     I  W +      +   G L+G
Sbjct:   245 KKRKHSLVAILSEHNSGINALALSGTNGSLLHSGGSDGSILVWERD-DGGDIVVVGMLRG 303

Query:   328 HTHAVMCLASVANYVISGSADSTSRVW-AREQDGRHTMLAVLVGHRGPIRCAI-AFLGRF 385
             HT +V+CLA V++ + SGSAD T R+W    +D  ++ LA+L GH GP++C   AF  R 
Sbjct:   304 HTESVLCLAVVSDILCSGSADKTVRLWKCSAKD--YSCLAMLEGHLGPVKCLTGAF--RD 359

Query:   386 GEETEDEYCTICTGSLDGVLKMWRVTRP 413
               + ++    I +G LD  +K+W+V  P
Sbjct:   360 SRKADEASYHIYSGGLDSQVKVWQVLVP 387

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	434
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-34
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-27
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	5e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  127 bits (321), Expect = 9e-34
 Identities = 79/327 (24%), Positives = 130/327 (39%), Gaps = 57/327 (17%)

Query: 93  GQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAA 148
           G + C+A       + TGS    I++W          LK  T  V  +  S D   + + 
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASG 69

Query: 149 YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT 208
             D  IR+W    + G     L                      H   ++S+A +     
Sbjct: 70  SSDKTIRLWD--LETGECVRTLTG--------------------HTSYVSSVAFSPDGRI 107

Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-DDGVLYSASDDATVRVWRRYFY 267
           L S+S DKTIKVW +   KC+ T++ H++ +N++  + D   + S+S D T+++W     
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW----- 162

Query: 268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW--HKGWFSAQLQYGGAL 325
            + +    + TLT     V ++  + D   L    +DG I  W    G     L+     
Sbjct: 163 -DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR----- 216

Query: 326 QGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRH-TMLAVLVGHRGPIRCAIAFL 382
            GH + V  +A       + SGS D T RVW    D R    +  L GH   +   +A+ 
Sbjct: 217 -GHENGVNSVAFSPDGYLLASGSEDGTIRVW----DLRTGECVQTLSGHTNSVTS-LAW- 269

Query: 383 GRFGEETEDEYCTICTGSLDGVLKMWR 409
                    +   + +GS DG +++W 
Sbjct: 270 -------SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  118 bits (298), Expect = 2e-30
 Identities = 79/318 (24%), Positives = 123/318 (38%), Gaps = 46/318 (14%)

Query: 51  ISLHTSPLSSPR-HPFNPTAAAGSS-------SPETSSSYRCISSVLKKDGQILCIAVGN 102
           +  HT  ++     P     A GS          ET    R +         +   A G 
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDR--VYAAYGDGKIRVWRST 160
            ++ +GS    IR+W          L   TS V ++  S D   + ++  D  I+VW   
Sbjct: 65  -YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW--D 121

Query: 161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKV 220
            + G     L                      H   + S+A +     + S+S D TIK+
Sbjct: 122 VETGKCLTTLRG--------------------HTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL 279
           W +R  KC+ T+  H+  +N++  + DG  L S+S D T+++W     +   L     TL
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD--LSTGKCLG----TL 215

Query: 280 TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV- 338
               + V ++  + D  LL  G  DG I  W         +    L GHT++V  LA   
Sbjct: 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWD----LRTGECVQTLSGHTNSVTSLAWSP 271

Query: 339 -ANYVISGSADSTSRVWA 355
               + SGSAD T R+W 
Sbjct: 272 DGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  109 bits (275), Expect = 4e-27
 Identities = 72/292 (24%), Positives = 121/292 (41%), Gaps = 49/292 (16%)

Query: 124 ECGRLKAKTSMVVAMEVS--HDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR 181
               LK  T  V  +  S     +    GDG I+VW                 +TG  +R
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL---------------ETGELLR 45

Query: 182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA 241
            L         H GP+  +A +     L S S DKTI++W +   +C+ T+  H+  +++
Sbjct: 46  TLKG-------HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS 98

Query: 242 LVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG 300
           +  + DG +L S+S D T++VW      + +    + TL      V ++  + D   +  
Sbjct: 99  VAFSPDGRILSSSSRDKTIKVW------DVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Query: 301 GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANY--VISGSADSTSRVWAREQ 358
              DG I    K W     +    L GHT  V  +A   +   ++S S+D T ++W  + 
Sbjct: 153 SSQDGTI----KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW--DL 206

Query: 359 DGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV 410
                 L  L GH   +  ++AF         D Y  + +GS DG +++W +
Sbjct: 207 STGKC-LGTLRGHENGV-NSVAFSP-------DGY-LLASGSEDGTIRVWDL 248

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  108 bits (272), Expect = 8e-27
 Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 30/236 (12%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV-VADDGVLY 251
           H G +T +A +     L + S D TIKVW +   + + T++ H+ P+  +   AD   L 
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH 311
           S S D T+R+W        +      TLT   S V ++  + D  +L     D  I  W 
Sbjct: 68  SGSSDKTIRLWD---LETGECVR---TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGR-HTMLAVL 368
               + +      L+GHT  V  +A      +V S S D T ++W    D R    +A L
Sbjct: 122 --VETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW----DLRTGKCVATL 173

Query: 369 VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC---GHLN 421
            GH G +   +AF     +        + + S DG +K+W ++  K      GH N
Sbjct: 174 TGHTGEVNS-VAFSPDGEK--------LLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.4 bits (194), Expect = 6e-16
 Identities = 87/369 (23%), Positives = 146/369 (39%), Gaps = 53/369 (14%)

Query: 56  SPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNV 113
           S LS           A  S    S        +   +  I  IA       + +GS    
Sbjct: 29  SLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGT 88

Query: 114 IRIWKQPEFTECGR--LKAKTSMVVAMEVSH---DRVYAAYG--DGKIRVWRSTWDNGVK 166
           I++W      +  +       S V  + +S    + +  A    DG +++W  +    + 
Sbjct: 89  IKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI 148

Query: 167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRD 225
                                  +  H   +TS+A +     L S S LD TIK+W +R 
Sbjct: 149 R---------------------TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187

Query: 226 SKCIETIQAHSEPINALVVADDGVLY--SASDDATVRVWRRYFYSENQLHTLILTLTAKY 283
            K + T+  H++P+++L  + DG L   S S D T+R+W     S  +L    L   + +
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD---LSTGKLLRSTL---SGH 241

Query: 284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA--SVANY 341
           S     + + D  LL  G +DG I  W     S+ L+    L GH+ +V+ +A       
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT---LSGHSSSVLSVAFSPDGKL 298

Query: 342 VISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL 401
           + SGS+D T R+W   + G+      L GH GP+   ++F       + D    +  GS 
Sbjct: 299 LASGSSDGTVRLW-DLETGKLLSSLTLKGHEGPVSS-LSF-------SPDGSLLVSGGSD 349

Query: 402 DGVLKMWRV 410
           DG +++W +
Sbjct: 350 DGTIRLWDL 358

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.0 bits (193), Expect = 8e-16
 Identities = 76/331 (22%), Positives = 130/331 (39%), Gaps = 49/331 (14%)

Query: 41  PYSPPRFSSPISLHTSPLSS-PRHPFNPTAAAGSSSPET-----SSSYRCISSVLKKDGQ 94
             +P +    +  H+  ++S    P     A+GSS   T       + + +S++      
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200

Query: 95  ILCIAV---GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYG- 150
           +  +A    G   I +GS    IR+W            +  S  V    S D    A G 
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260

Query: 151 -DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTL 209
            DG IR+W                      +R+       +  H   + S+A +     L
Sbjct: 261 SDGTIRLWD---------------------LRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 210 YSASLDKTIKVWRIRDSKCIE--TIQAHSEPINALVVADDG--VLYSASDDATVRVWRRY 265
            S S D T+++W +   K +   T++ H  P+++L  + DG  ++   SDD T+R+W   
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD-- 357

Query: 266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL 325
             +   L TL       +S V +++ + D  ++  G TDG +  W      +       L
Sbjct: 358 LRTGKPLKTLE-----GHSNVLSVSFSPDGRVVSSGSTDGTVRLWD----LSTGSLLRNL 408

Query: 326 QGHTHAVMCLASVAN--YVISGSADSTSRVW 354
            GHT  V  L    +   + SGS+D+T R+W
Sbjct: 409 DGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 71.3 bits (173), Expect = 3e-13
 Identities = 71/331 (21%), Positives = 123/331 (37%), Gaps = 50/331 (15%)

Query: 111 SNVIRIWKQPEFTECGRLKAKTSMVVAMEVS-HDRVYAAYG-DGKIRVWRSTWDNGVKHV 168
           + +              L+     + ++  S    +  +   DG I++W    DNG K +
Sbjct: 44  ALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLW--DLDNGEKLI 101

Query: 169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS---LDKTIKVWRIRD 225
           K                       H   ++ +A++  D      +   LD T+K+W +  
Sbjct: 102 K------------------SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143

Query: 226 S-KCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK 282
             K I T++ HSE + +L  + DG  +   +S D T+++W        +    + TL   
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL------RTGKPLSTLAGH 197

Query: 283 YSPVKTLTLTLDDG-LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH-AVMCLASVAN 340
             PV +L  + D G L+  G +DG I  W     S        L GH+   V   +   +
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWD---LSTGKLLRSTLSGHSDSVVSSFSPDGS 254

Query: 341 YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS 400
            + SGS+D T R+W          L  L GH   +   +AF          +   + +GS
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSL--LRTLSGHSSSVLS-VAFSP--------DGKLLASGS 303

Query: 401 LDGVLKMWRVTRPKSSCGHLNKTNGHEYFEL 431
            DG +++W +   K       K +      L
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 65.9 bits (159), Expect = 1e-11
 Identities = 69/298 (23%), Positives = 117/298 (39%), Gaps = 38/298 (12%)

Query: 26  FLRSISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPR-HPFNPTAAAGSSSPETSSSY-- 82
            L S S+ + +   +     +  S ++ HT P+SS    P      A  SS  T   +  
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 83  ---RCISSVLK--KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGR-LKAKTSMVV 136
              + + S L    D  +   +     + +GS    IR+W     +   R L   +S V+
Sbjct: 229 STGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Query: 137 AMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM 194
           ++  S D   + +   DG +R+W                          ++    +  H 
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLE--------------------TGKLLSSLTLKGHE 328

Query: 195 GPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA 253
           GP++S++ +     L S  S D TI++W +R  K ++T++ HS  ++     D  V+ S 
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388

Query: 254 SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH 311
           S D TVR+W     S      L+  L    S V +L  + D   L  G +D  I  W 
Sbjct: 389 STDGTVRLWDLSTGS------LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 17/104 (16%)

Query: 323 GALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIA 380
             L+GHT  V C+A       + +GS D T +VW  E      +L  L GH GP+R   A
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDVAA 59

Query: 381 FLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC---GHLN 421
                G         + +GS D  +++W +   +      GH +
Sbjct: 60  S--ADGT-------YLASGSSDKTIRLWDLETGECVRTLTGHTS 94

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 225 DSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
             + ++T++ H+ P+ ++  + DG  L S SDD T+++W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 227 KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
           K + T++ H+ P+ ++  + DG +L S SDD TVRVW
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVW 221
           H GP+TS+A +   + L S S D T++VW
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVW 221
           H GP+TS+A +     L S S D TIK+W
Sbjct: 11  HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.98
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.98
KOG0641	350	consensus WD40 repeat protein [General function pr	99.98
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
PTZ00421	493	coronin; Provisional	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG1188	376	consensus WD40 repeat protein [General function pr	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG0649	325	consensus WD40 repeat protein [General function pr	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG1334	559	consensus WD40 repeat protein [General function pr	99.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG1310	758	consensus WD40 repeat protein [General function pr	99.86
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG1273	405	consensus WD40 repeat protein [General function pr	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.83
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG1963	792	consensus WD40 repeat protein [General function pr	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.76
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.7
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG2321	703	consensus WD40 repeat protein [General function pr	99.68
KOG1334	559	consensus WD40 repeat protein [General function pr	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.67
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.63
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.63
PRK01742	429	tolB translocation protein TolB; Provisional	99.61
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.61
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.6
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.55
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.5
KOG2139	445	consensus WD40 repeat protein [General function pr	99.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.5
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.46
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.45
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.43
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.42
PRK03629	429	tolB translocation protein TolB; Provisional	99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.41
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.41
PRK02889	427	tolB translocation protein TolB; Provisional	99.41
PRK04922	433	tolB translocation protein TolB; Provisional	99.39
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
PRK05137	435	tolB translocation protein TolB; Provisional	99.37
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.36
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.31
KOG2321	703	consensus WD40 repeat protein [General function pr	99.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.3
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.29
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.29
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.26
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.25
KOG2315	566	consensus Predicted translation initiation factor	99.25
PRK04792	448	tolB translocation protein TolB; Provisional	99.24
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.24
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.24
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.23
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.22
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.21
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.18
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.18
PRK00178	430	tolB translocation protein TolB; Provisional	99.17
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.16
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.15
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.14
PRK01029	428	tolB translocation protein TolB; Provisional	99.12
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.09
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.07
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.06
PRK04792	448	tolB translocation protein TolB; Provisional	99.05
PRK01029	428	tolB translocation protein TolB; Provisional	99.03
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.0
KOG2315	566	consensus Predicted translation initiation factor	98.99
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.98
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.98
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.98
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.96
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.96
KOG2695	425	consensus WD40 repeat protein [General function pr	98.92
KOG2314	698	consensus Translation initiation factor 3, subunit	98.92
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.9
KOG2314	698	consensus Translation initiation factor 3, subunit	98.89
KOG2695	425	consensus WD40 repeat protein [General function pr	98.89
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.89
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.84
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.83
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.82
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.8
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.79
KOG3621	726	consensus WD40 repeat-containing protein [General	98.79
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.76
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.75
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.71
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.7
COG4946	668	Uncharacterized protein related to the periplasmic	98.7
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.7
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.7
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.68
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.67
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.65
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.62
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.61
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.55
PRK04043	419	tolB translocation protein TolB; Provisional	98.55
PRK04043	419	tolB translocation protein TolB; Provisional	98.54
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.52
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.52
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.5
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.35
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.35
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.34
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.34
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.32
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.23
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.22
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.2
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.19
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.16
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.15
PRK02888	635	nitrous-oxide reductase; Validated	98.12
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.1
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.1
KOG3621	726	consensus WD40 repeat-containing protein [General	98.09
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.09
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.08
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.07
KOG2444	238	consensus WD40 repeat protein [General function pr	98.07
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.0
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.99
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.97
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.96
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.96
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
PHA02713	557	hypothetical protein; Provisional	97.85
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.82
PRK02888	635	nitrous-oxide reductase; Validated	97.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.71
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.68
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.66
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.65
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.64
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.63
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.62
PHA02713	557	hypothetical protein; Provisional	97.56
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.48
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.48
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.47
KOG2395	644	consensus Protein involved in vacuole import and d	97.46
KOG2395	644	consensus Protein involved in vacuole import and d	97.44
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.41
COG3391	381	Uncharacterized conserved protein [Function unknow	97.38
PRK13616	591	lipoprotein LpqB; Provisional	97.38
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.32
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.32
COG5276	370	Uncharacterized conserved protein [Function unknow	97.29
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.26
PRK13616	591	lipoprotein LpqB; Provisional	97.23
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.15
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.14
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.07
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.01
COG5276	370	Uncharacterized conserved protein [Function unknow	96.94
KOG2444	238	consensus WD40 repeat protein [General function pr	96.91
PHA03098	534	kelch-like protein; Provisional	96.91
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.89
PHA02790	480	Kelch-like protein; Provisional	96.89
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.83
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.72
PHA03098	534	kelch-like protein; Provisional	96.69
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.6
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.56
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.48
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.44
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.43
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.38
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.33
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.3
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.3
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.21
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.21
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.18
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.15
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.08
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.07
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.02
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.92
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.9
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.89
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.78
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.66
PHA02790	480	Kelch-like protein; Provisional	95.57
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.56
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.53
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.48
COG3391	381	Uncharacterized conserved protein [Function unknow	95.38
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.35
COG5167	776	VID27 Protein involved in vacuole import and degra	95.22
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.1
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.99
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.95
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.93
KOG2247	615	consensus WD40 repeat-containing protein [General	94.83
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.74
COG5167	776	VID27 Protein involved in vacuole import and degra	94.67
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.49
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.23
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.21
PRK13684	334	Ycf48-like protein; Provisional	94.1
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.9
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.9
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.6
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	93.32
KOG2247	615	consensus WD40 repeat-containing protein [General	93.17
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.02
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.92
PRK10115	686	protease 2; Provisional	92.81
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.77
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.77
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.76
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.63
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.58
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	92.44
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.44
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.38
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.38
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.02
PRK13684	334	Ycf48-like protein; Provisional	91.96
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.66
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.58
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.55
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.1
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.98
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.64
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.49
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.49
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.39
PLN02193	470	nitrile-specifier protein	90.34
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.67
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	89.55
PLN02153	341	epithiospecifier protein	89.45
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.16
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	89.15
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	89.06
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.99
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.8
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	88.77
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.7
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.43
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.84
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.62
COG4590	733	ABC-type uncharacterized transport system, permeas	87.6
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.58
PLN02153	341	epithiospecifier protein	87.54
KOG2714	465	consensus SETA binding protein SB1 and related pro	87.4
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	87.37
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.36
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	87.12
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	87.02
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	86.88
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.45
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.26
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.81
PLN02193	470	nitrile-specifier protein	85.65
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	85.21
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.57
COG3292	671	Predicted periplasmic ligand-binding sensor domain	84.41
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.31
KOG0783	1267	consensus Uncharacterized conserved protein, conta	83.95
PF14727	418	PHTB1_N: PTHB1 N-terminus	83.79
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	83.77
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.46
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	83.17
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	83.11
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	82.62
KOG2006	1023	consensus WD40 repeat protein [General function pr	82.45
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	82.26
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.88
PLN00033	398	photosystem II stability/assembly factor; Provisio	81.57
COG4590	733	ABC-type uncharacterized transport system, permeas	80.7
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	80.26
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	80.1
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	80.05

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.4e-53  Score=347.46  Aligned_cols=321  Identities=25%  Similarity=0.395  Sum_probs=289.5

Q ss_pred             CCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEe
Q 046226           45 PRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIW  117 (434)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iw  117 (434)
                      .+....+.+|..++-+..|++++..+++++.|.+++.|.+     +.+.++|...|.|++|  ||..||+|+.||.|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            3456789999999999999999999999999999998887     6789999999999999  99999999999999999


Q ss_pred             cCCCceeE-eeccCCCccEEEEEEeCC-------EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccc
Q 046226          118 KQPEFTEC-GRLKAKTSMVVAMEVSHD-------RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDK  189 (434)
Q Consensus       118 d~~~~~~~-~~~~~~~~~v~~l~~~~~-------~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (434)
                      |.++++++ ..+.+|...|++++|.|-       +|++++.||.|+|||+..+..+..+.                    
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls--------------------  244 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS--------------------  244 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec--------------------
Confidence            99998766 458999999999999873       78999999999999998776655553                    


Q ss_pred             ccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEc-----------CCC----------
Q 046226          190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-----------DDG----------  248 (434)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------~~~----------  248 (434)
                        +|..+|+|+.|-. ..+|++|+.|++|++|+...|++...+++|...|+.++.+           +.+          
T Consensus       245 --gHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~  321 (480)
T KOG0271|consen  245 --GHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ  321 (480)
T ss_pred             --cCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence              7999999999964 4589999999999999999999999999999999999887           111          


Q ss_pred             ----------------eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226          249 ----------------VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK  312 (434)
Q Consensus       249 ----------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  312 (434)
                                      .|++|+.|.++.+|+..     ...+.+..+.+|..-|+.+.|+||++++++++-|..|++||.
T Consensus       322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~-----~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g  396 (480)
T KOG0271|consen  322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPF-----KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG  396 (480)
T ss_pred             HHHHHHHHHhhccCcceeEEecCCceEEEeccc-----ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence                            49999999999999855     556677788999999999999999999999999999999996


Q ss_pred             CcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCC
Q 046226          313 GWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETE  390 (434)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  390 (434)
                      +    ..++...+.+|...|..++|+.+  +|++|+.|.++++|++++.   +....+.||.+.|.++.|+|+       
T Consensus       397 ~----tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk---Kl~~DLpGh~DEVf~vDwspD-------  462 (480)
T KOG0271|consen  397 R----TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK---KLKQDLPGHADEVFAVDWSPD-------  462 (480)
T ss_pred             C----CcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee---eecccCCCCCceEEEEEecCC-------
Confidence            5    44566788899999999999754  9999999999999999987   788899999999999999999       


Q ss_pred             CcccEEEEeecCCeEEEEe
Q 046226          391 DEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       391 ~~~~~l~s~~~Dg~v~iw~  409 (434)
                        |..+++|+.|..+++|.
T Consensus       463 --G~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  463 --GQRVASGGKDKVLRLWR  479 (480)
T ss_pred             --CceeecCCCceEEEeec
Confidence              99999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-50  Score=333.60  Aligned_cols=296  Identities=24%  Similarity=0.380  Sum_probs=263.8

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeE
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKI  154 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i  154 (434)
                      ....+|-.++.||.++|.|+.|  +|..|++|+.|.++|+||+.+..+..+.++|...|.|++|+||  .|++|+.||+|
T Consensus       102 rpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I  181 (480)
T KOG0271|consen  102 RPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSI  181 (480)
T ss_pred             cccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeE
Confidence            4457788889999999999999  8999999999999999999999999999999999999999998  89999999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-----CCCEEEEEecCCcEEEEEcCCCeeE
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-----SDDTLYSASLDKTIKVWRIRDSKCI  229 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~  229 (434)
                      ++||..+++.+...                     +.+|...|++++|.|     ..++|++++.||.|+|||+..++++
T Consensus       182 ~lwdpktg~~~g~~---------------------l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~  240 (480)
T KOG0271|consen  182 RLWDPKTGQQIGRA---------------------LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV  240 (480)
T ss_pred             EEecCCCCCccccc---------------------ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE
Confidence            99998877654432                     237999999999976     5789999999999999999999999


Q ss_pred             EEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEe-----------cCC---
Q 046226          230 ETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT-----------LDD---  295 (434)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~---  295 (434)
                      ..+.+|..+|+|+.|-.++++++|+.|++|++|+..      .......+.+|...|+.++.+           |.+   
T Consensus       241 ~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~------dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~  314 (480)
T KOG0271|consen  241 RTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRAL------DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP  314 (480)
T ss_pred             EEeccCccceEEEEEcCCceEEecCCCceEEEEEcc------chhHHHhhcccchheeeeeccchhhhhccccccccccC
Confidence            999999999999999989999999999999999876      355677788999999988876           223   


Q ss_pred             ----------------------CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcE
Q 046226          296 ----------------------GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTS  351 (434)
Q Consensus       296 ----------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i  351 (434)
                                            ..|++|+.|.++.+|+-..   ..+....+.+|...|..+.|+  ++++++++.|..|
T Consensus       315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~---~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV  391 (480)
T KOG0271|consen  315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK---SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSV  391 (480)
T ss_pred             CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc---cccchhhhhchhhheeeEEECCCccEEEEeecccce
Confidence                                  3599999999999998642   333445677999999988886  5699999999999


Q ss_pred             EEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          352 RVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      ++||.+++   +.+..|+||-++|+.++|+.|         .++|++|+.|.++++|++.+.+..
T Consensus       392 kLW~g~tG---k~lasfRGHv~~VYqvawsaD---------sRLlVS~SkDsTLKvw~V~tkKl~  444 (480)
T KOG0271|consen  392 KLWDGRTG---KFLASFRGHVAAVYQVAWSAD---------SRLLVSGSKDSTLKVWDVRTKKLK  444 (480)
T ss_pred             eeeeCCCc---chhhhhhhccceeEEEEeccC---------ccEEEEcCCCceEEEEEeeeeeec
Confidence            99999999   899999999999999999998         899999999999999999987743

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.2e-49  Score=331.51  Aligned_cols=281  Identities=21%  Similarity=0.350  Sum_probs=259.8

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEEee
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRVWR  158 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~vwd  158 (434)
                      ...-.+-+.+|..+.|  +++.|+||+.+|.++||+..+...+..+.+|...|.++.|+|.    .+++|+.||++++|+
T Consensus       168 ~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~  247 (459)
T KOG0272|consen  168 VCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK  247 (459)
T ss_pred             hhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence            3344567889999999  9999999999999999999999999999999999999999995    799999999999999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP  238 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  238 (434)
                      +.+...+..+.                      +|...|..++|+|+|++|++++.|.+-++||++++..+....+|...
T Consensus       248 ~~~e~~l~~l~----------------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~  305 (459)
T KOG0272|consen  248 LSQETPLQDLE----------------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG  305 (459)
T ss_pred             cCCCcchhhhh----------------------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence            98776665553                      79999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      |.+++|.+|| ++++|+.|..-+|||++      ....+..+.+|..+|.+++|+|+|..|++|+.|++++|||++....
T Consensus       306 v~~iaf~~DGSL~~tGGlD~~~RvWDlR------tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  306 VFSIAFQPDGSLAATGGLDSLGRVWDLR------TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             cceeEecCCCceeeccCccchhheeecc------cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence            9999999999 99999999999999999      6677888999999999999999999999999999999999986554


Q ss_pred             cccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          318 QLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       318 ~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                          ...+.+|...|..+.|+   |.+|++++.|++++||...+.   .+++.+.||.+.|.+++++++         ++
T Consensus       380 ----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d---------~~  443 (459)
T KOG0272|consen  380 ----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPD---------SQ  443 (459)
T ss_pred             ----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccC---------Cc
Confidence                34678999999888886   569999999999999998887   899999999999999999999         99


Q ss_pred             EEEEeecCCeEEEEe
Q 046226          395 TICTGSLDGVLKMWR  409 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~  409 (434)
                      .|+|++.|.++++|.
T Consensus       444 ~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  444 AIATSSFDRTIKLWR  458 (459)
T ss_pred             eEEEeccCceeeecc
Confidence            999999999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.9e-44  Score=285.50  Aligned_cols=292  Identities=17%  Similarity=0.265  Sum_probs=256.0

Q ss_pred             ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEE
Q 046226           81 SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRV  156 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~v  156 (434)
                      ..+..++|++|.+.|.++.|  +.++|++++.||.+.|||.-+...+..+......|..++|+|.  .++.|+.|+...|
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI  123 (343)
T ss_pred             eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence            34556889999999999999  9999999999999999999999999999999999999999997  7888888999999


Q ss_pred             eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc
Q 046226          157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS  236 (434)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  236 (434)
                      |++.+.+......+.                ..+.+|.+.+.|+.|.. ...|++++.|.+..+||+++++.+..|.+|.
T Consensus       124 y~ls~~d~~g~~~v~----------------r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~  186 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVS----------------RELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHT  186 (343)
T ss_pred             Eecccccccccceee----------------eeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCc
Confidence            999865322211110                12347999999999976 6689999999999999999999999999999


Q ss_pred             cCeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          237 EPINALVVAD-DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       237 ~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      +.|.++.++| ++ .+++|+-|+..++||++      .......+.+|+..|++++|.|+|.-+++|+.|++.++||++.
T Consensus       187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R------~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR------SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             ccEEEEecCCCCCCeEEecccccceeeeecc------CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence            9999999999 66 99999999999999999      4567788999999999999999999999999999999999987


Q ss_pred             ccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCc
Q 046226          315 FSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDE  392 (434)
Q Consensus       315 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  392 (434)
                      ......+..  ..-...|++++|+  |++|++|..|..+.+||.-.+   +.+..+.+|.+.|.++..+|+         
T Consensus       261 D~~~a~ys~--~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~D---------  326 (343)
T KOG0286|consen  261 DQELAVYSH--DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPD---------  326 (343)
T ss_pred             CcEEeeecc--CcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCC---------
Confidence            665555432  2334577888885  899999999999999999887   788889999999999999999         


Q ss_pred             ccEEEEeecCCeEEEEe
Q 046226          393 YCTICTGSLDGVLKMWR  409 (434)
Q Consensus       393 ~~~l~s~~~Dg~v~iw~  409 (434)
                      |..++||+.|.++|||.
T Consensus       327 G~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  327 GMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CcEEEecchhHheeecC
Confidence            99999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.3e-44  Score=301.46  Aligned_cols=271  Identities=19%  Similarity=0.279  Sum_probs=246.3

Q ss_pred             cccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEE----cCCEEEEEeCCCeEEEecCCCce
Q 046226           53 LHTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV----GNGFIYTGSDSNVIRIWKQPEFT  123 (434)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~~~  123 (434)
                      +-..++....++.+...+++++-.+..+.|     +.+.+|.+|.+.|.++.|    ++..+|||+.||++++|++.+..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            455778888899999999999977766555     458899999999999999    36699999999999999999999


Q ss_pred             eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226          124 ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA  201 (434)
Q Consensus       124 ~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  201 (434)
                      ++..+.+|...|..++|+|+  +|.+++.|.+-++||+.++..+...+                      +|...|.+++
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE----------------------GHs~~v~~ia  310 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE----------------------GHSKGVFSIA  310 (459)
T ss_pred             chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc----------------------ccccccceeE
Confidence            99999999999999999997  89999999999999999876655543                      7999999999


Q ss_pred             EecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226          202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT  280 (434)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  280 (434)
                      |++||.++++|+.|..-+|||+++|+++..+.+|..+|.+++|+|+| .|+||+.|++++|||++      .......+.
T Consensus       311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR------~r~~ly~ip  384 (459)
T KOG0272|consen  311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR------MRSELYTIP  384 (459)
T ss_pred             ecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec------ccccceecc
Confidence            99999999999999999999999999999999999999999999999 99999999999999999      444588899


Q ss_pred             ccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEe
Q 046226          281 AKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWA  355 (434)
Q Consensus       281 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd  355 (434)
                      +|..-|+.++|+| .|.+|++++.|++++||.-    ....+.+.+.||.+.|.+++.+  +.++++++.|.++++|.
T Consensus       385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~----~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST----RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccchhhheEecccCCeEEEEcccCcceeeecC----CCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999998 7889999999999999985    4556667889999999998875  66899999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.9e-42  Score=269.68  Aligned_cols=285  Identities=20%  Similarity=0.318  Sum_probs=239.0

Q ss_pred             CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226          103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR  181 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      -+|++++.|.+||+|...+|.+..+++...+.|+.+...|+ ..+++.....|++||+++.+......            
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t------------   78 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVAT------------   78 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeE------------
Confidence            47999999999999999999999999999999999999998 56666667889999998776532221            


Q ss_pred             EEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEE
Q 046226          182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVR  260 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~  260 (434)
                              +.+|.+.|+++.|..+|+++++|++||+++|||++...+.+.++ |..+|+++..+|+. .|++|..+|.|+
T Consensus        79 --------~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~ir  149 (311)
T KOG0315|consen   79 --------FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIR  149 (311)
T ss_pred             --------EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEE
Confidence                    12699999999999999999999999999999999966655554 77999999999998 999999999999


Q ss_pred             EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc--ccccccCcccCcccceEEEEee
Q 046226          261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS--AQLQYGGALQGHTHAVMCLASV  338 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~  338 (434)
                      +||+..  .....   .........|.++.+.|||.+++.+...|+.++|++-...  ..++....++.|...+..+.++
T Consensus       150 vWDl~~--~~c~~---~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS  224 (311)
T KOG0315|consen  150 VWDLGE--NSCTH---ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS  224 (311)
T ss_pred             EEEccC--Ccccc---ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence            999981  11111   2233444689999999999999999999999999986432  3344556788999888777665


Q ss_pred             --CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          339 --ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       339 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                        +++|++++.|.+++||+.++.  .+....+.+|...++..+|+-+         |.||+||+.|+.+++|++..++..
T Consensus       225 Pd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~d---------g~YlvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  225 PDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSAD---------GEYLVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             CCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccC---------ccEEEecCCCCceeecccccCcee
Confidence              679999999999999999875  4667788999999999999999         999999999999999999999976


Q ss_pred             cccccccc
Q 046226          417 CGHLNKTN  424 (434)
Q Consensus       417 ~~~~~~~~  424 (434)
                      ........
T Consensus       294 ~qy~gh~K  301 (311)
T KOG0315|consen  294 RQYQGHHK  301 (311)
T ss_pred             eecCCccc
Confidence            55443333

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.4e-42  Score=282.03  Aligned_cols=297  Identities=21%  Similarity=0.372  Sum_probs=262.5

Q ss_pred             CCCcccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc
Q 046226           75 SPETSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG  150 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~  150 (434)
                      .++.-..|+.-+.+.+|.+.|.|+++  .+++|+||+.|++|+|||+.++++..++.+|-..|..+++++.  ++++++.
T Consensus       134 rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  134 RPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             CccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence            45566778888999999999999999  6889999999999999999999999999999999999999986  9999999


Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE  230 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  230 (434)
                      |+.|+.||++.++.++.+.                      +|-..|.|++.+|.-..|++|+.|.++++||+++...+.
T Consensus       214 dk~VKCwDLe~nkvIR~Yh----------------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~  271 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHYH----------------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH  271 (460)
T ss_pred             CCeeEEEechhhhhHHHhc----------------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence            9999999999888887763                      899999999999999999999999999999999999999


Q ss_pred             EcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEE
Q 046226          231 TIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY  309 (434)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  309 (434)
                      .+.+|..+|..+.+.|-. .+++|+.|++|++||++      ..+....+..|...+.+++.+|....+++++.|. |+-
T Consensus       272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~------agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~  344 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR------AGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQ  344 (460)
T ss_pred             EecCCCCcceeEEeecCCCceEEecCCceEEEeeec------cCceeEeeecccceeeEEecCCchhhhhccCCcc-cee
Confidence            999999999999999876 99999999999999998      4556677788999999999999999999998775 899


Q ss_pred             EEcCcccccccccCcccCcccceEEEEee-CCEEEEecCCCcEEEEeccCCCceeeEEEeec-----cccceeEEEEeec
Q 046226          310 WHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVG-----HRGPIRCAIAFLG  383 (434)
Q Consensus       310 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~  383 (434)
                      |++.    ...+...+.+|...|.+++.+ ..++++|+++|.+.+||.+++..++..++...     ....|.+.+|...
T Consensus       345 w~~p----~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt  420 (460)
T KOG0285|consen  345 WKLP----EGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT  420 (460)
T ss_pred             ccCC----ccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence            9974    344445688999999999987 55999999999999999999865555433322     2346788888877


Q ss_pred             ccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          384 RFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       384 ~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                               |..|+||..|.+|++|.-+..
T Consensus       421 ---------g~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  421 ---------GSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             ---------CceEEeccCCcceEEEecccc
Confidence                     899999999999999986644

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-41  Score=268.64  Aligned_cols=284  Identities=22%  Similarity=0.317  Sum_probs=238.6

Q ss_pred             eeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCC-----CceeEeeccCCCccEEEEEEeCC--EEEEEEcC
Q 046226           82 YRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQP-----EFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD  151 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d  151 (434)
                      .....++.+|.+.|+.++.   +.+.+++++.|.++.+|++.     .|..++.+++|...|..+..+++  +.++++.|
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            3456789999999999999   67899999999999999874     37778999999999999999997  88999999


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  231 (434)
                      +++++||+.+++....+.                      +|...|.+++|++|++.+++|+.|.+|++|++... +..+
T Consensus        85 ~~lrlWDl~~g~~t~~f~----------------------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t  141 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFV----------------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYT  141 (315)
T ss_pred             ceEEEEEecCCcEEEEEE----------------------ecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEE
Confidence            999999998875555543                      79999999999999999999999999999998654 4444


Q ss_pred             cccC--ccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCe
Q 046226          232 IQAH--SEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGY  306 (434)
Q Consensus       232 ~~~~--~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  306 (434)
                      +..+  .+.|.|+.|+|+.   .|++++.|++|++||++      ..+....+.+|.+.++.++++|||.+.++|+.||.
T Consensus       142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~------~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~  215 (315)
T KOG0279|consen  142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR------NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE  215 (315)
T ss_pred             EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC------CcchhhccccccccEEEEEECCCCCEEecCCCCce
Confidence            4433  7899999999984   99999999999999998      55666778899999999999999999999999999


Q ss_pred             EEEEEcCcccccccccCcccCcccceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEee----cc-----cccee
Q 046226          307 IHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLV----GH-----RGPIR  376 (434)
Q Consensus       307 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h-----~~~v~  376 (434)
                      +.+||++..+....+     .|...|.+++|+++ +.++...+..|+|||++++.   ++..+.    +.     .-...
T Consensus       216 ~~LwdL~~~k~lysl-----~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~cl  287 (315)
T KOG0279|consen  216 AMLWDLNEGKNLYSL-----EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPICL  287 (315)
T ss_pred             EEEEEccCCceeEec-----cCCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccCCcEEE
Confidence            999999866553322     67889999999977 55555566779999999873   333222    11     22345


Q ss_pred             EEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          377 CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      +++|+++         |..|.+|-.|+.|++|.+.
T Consensus       288 slaws~d---------G~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  288 SLAWSAD---------GQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEEcCC---------CcEEEeeecCCcEEEEEee
Confidence            6888888         9999999999999999975

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.7e-40  Score=265.68  Aligned_cols=278  Identities=20%  Similarity=0.335  Sum_probs=245.1

Q ss_pred             CCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeEEEee-----ccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226           48 SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVLK-----KDGQILCIAV--GNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~  120 (434)
                      .+.+.+|...+++..+.++.+.+.+++.|+.+-.|....+.+.     ....|..++|  .|+++|+|+-|+.+.||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            4688999999999999999999999999998887777555444     4778999999  89999999999999999997


Q ss_pred             Cc------eeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226          121 EF------TECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH  193 (434)
Q Consensus       121 ~~------~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
                      +.      .....+.+|++.+.|+.|-+| .|++++.|.++.+||+++++.+..+.                      +|
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~----------------------GH  185 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH----------------------GH  185 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec----------------------CC
Confidence            54      345668999999999999988 99999999999999999887776663                      79


Q ss_pred             CCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226          194 MGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ  271 (434)
Q Consensus       194 ~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~  271 (434)
                      .+.|.+++++| +++.+++|+.|+..++||++.+.++++|.+|...|+++.|.|+| -+++|+.|++.|+||++..    
T Consensus       186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD----  261 (343)
T KOG0286|consen  186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD----  261 (343)
T ss_pred             cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC----
Confidence            99999999999 89999999999999999999999999999999999999999999 9999999999999999921    


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS  349 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  349 (434)
                      .............+|++++|+..|++|++|..|.++.+||.    .+.+....+.+|...|.|+..+  |..+++|+.|.
T Consensus       262 ~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt----lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  262 QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT----LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec----cccceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence            12223334445578999999999999999999999999995    4555566778999999998764  77999999999


Q ss_pred             cEEEEe
Q 046226          350 TSRVWA  355 (434)
Q Consensus       350 ~i~iwd  355 (434)
                      +++||.
T Consensus       338 ~lriW~  343 (343)
T KOG0286|consen  338 TLRIWA  343 (343)
T ss_pred             heeecC
Confidence            999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.5e-38  Score=273.66  Aligned_cols=355  Identities=19%  Similarity=0.249  Sum_probs=281.2

Q ss_pred             CCcccccCCCCCCCC-CCCCCccCCCCCCCccc-----ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226           49 SPISLHTSPLSSPRH-PFNPTAAAGSSSPETSS-----SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~  120 (434)
                      -++.+|+..+++..+ +..+-+++++++|.++.     .|+--.++..|..-|.|+.|  ||.++++.+.||.|.+||-.
T Consensus       141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk  220 (603)
T KOG0318|consen  141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK  220 (603)
T ss_pred             ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence            478899999988765 44566778888887753     46667778889999999999  99999999999999999999


Q ss_pred             CceeEeecc---CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCC-----------------CC
Q 046226          121 EFTECGRLK---AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKT-----------------GG  178 (434)
Q Consensus       121 ~~~~~~~~~---~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------~~  178 (434)
                      +++.+..+.   +|.+.|.+++|+||  +++++++|.+++|||+.+.+.+..+.+...-..                 .+
T Consensus       221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G  300 (603)
T KOG0318|consen  221 TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSG  300 (603)
T ss_pred             CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence            999999998   89999999999998  999999999999999998887776654322000                 01


Q ss_pred             ceeEEEe----ccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc-ccCccCeEEEEEcCCCeEEEE
Q 046226          179 AVRNLIV----GKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI-QAHSEPINALVVADDGVLYSA  253 (434)
Q Consensus       179 ~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~s~  253 (434)
                      .+..+..    ......+|...|+++..++++++|++|+.||.|.-||..++..-+.. +.|...|.+++.+..+.++++
T Consensus       301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~  380 (603)
T KOG0318|consen  301 TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI  380 (603)
T ss_pred             EEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence            1111111    12245689999999999999999999999999999999988765444 679999999999987899999


Q ss_pred             eCCCeEEEEecccccCcce--------eEE-----------------EEEecc--------cccCeEEEEEecCCCEEEE
Q 046226          254 SDDATVRVWRRYFYSENQL--------HTL-----------------ILTLTA--------KYSPVKTLTLTLDDGLLYG  300 (434)
Q Consensus       254 ~~dg~i~iwd~~~~~~~~~--------~~~-----------------~~~~~~--------~~~~v~~~~~~~~~~~l~~  300 (434)
                      +.|.++++.++....-...        ...                 +..+..        ..-...+++++|++..+++
T Consensus       381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV  460 (603)
T KOG0318|consen  381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV  460 (603)
T ss_pred             ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence            9999999997741110000        000                 001111        1124568899999999999


Q ss_pred             EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEE
Q 046226          301 GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCA  378 (434)
Q Consensus       301 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~  378 (434)
                      |+.||.|+||.+.....  .....+..|.++|++++++  +.+|++|...+.+.+||+.+...  ....+.-|...|.++
T Consensus       461 GG~Dgkvhvysl~g~~l--~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~  536 (603)
T KOG0318|consen  461 GGQDGKVHVYSLSGDEL--KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCV  536 (603)
T ss_pred             ecccceEEEEEecCCcc--cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEE
Confidence            99999999999975443  2223455899999999986  56999999999999999998743  445566699999999


Q ss_pred             EEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          379 IAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       379 ~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      +|+|+         ..++|||+.|-.|.||+++.+...
T Consensus       537 aWsP~---------n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  537 AWSPN---------NKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             EeCCC---------ceEEEeccccceEEEEEccChhhh
Confidence            99999         889999999999999999987654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.1e-41  Score=276.19  Aligned_cols=281  Identities=21%  Similarity=0.376  Sum_probs=248.6

Q ss_pred             ccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226           91 KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKL  170 (434)
Q Consensus        91 h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~  170 (434)
                      ....|+|+.++++.+++|..|++|+|||..+..+...+.+|++.|.|+.|....+++|+.|.+|++||+++++.+..+  
T Consensus       196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tl--  273 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTL--  273 (499)
T ss_pred             cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHH--
Confidence            456799999999999999999999999999999999999999999999999999999999999999999998887766  


Q ss_pred             eeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe---eEEEcccCccCeEEEEEcCC
Q 046226          171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK---CIETIQAHSEPINALVVADD  247 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~  247 (434)
                                          .+|...|..+.|+  +.++++++.|.+|.+||+....   +.+.+.+|...|+.+.|+..
T Consensus       274 --------------------ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k  331 (499)
T KOG0281|consen  274 --------------------IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK  331 (499)
T ss_pred             --------------------hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc
Confidence                                3799999999997  7799999999999999997654   44567899999999999744


Q ss_pred             CeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC
Q 046226          248 GVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG  327 (434)
Q Consensus       248 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  327 (434)
                       ++++++.|.+|++|++.      ....+..+.+|...|.|+.+  .++++++|+.|.+|++||+..+    .....++|
T Consensus       332 -yIVsASgDRTikvW~~s------t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G----~cLRvLeG  398 (499)
T KOG0281|consen  332 -YIVSASGDRTIKVWSTS------TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG----ACLRVLEG  398 (499)
T ss_pred             -eEEEecCCceEEEEecc------ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc----HHHHHHhc
Confidence             99999999999999987      67788899999999998887  5799999999999999998643    44457789


Q ss_pred             cccceEEEEeeCCEEEEecCCCcEEEEeccCCCce------eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226          328 HTHAVMCLASVANYVISGSADSTSRVWAREQDGRH------TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL  401 (434)
Q Consensus       328 ~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  401 (434)
                      |+.-|.|+.|+.+.+++|+.||+|++||+..+..+      .++..+..|.+.|..+.|.           ...|++++.
T Consensus       399 HEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-----------~fqIvsssH  467 (499)
T KOG0281|consen  399 HEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-----------EFQIISSSH  467 (499)
T ss_pred             hHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-----------ceEEEeccC
Confidence            99999999999999999999999999999876432      2566778899999999997           457999999


Q ss_pred             CCeEEEEecCCCCccccc
Q 046226          402 DGVLKMWRVTRPKSSCGH  419 (434)
Q Consensus       402 Dg~v~iw~~~~~~~~~~~  419 (434)
                      |.+|.|||+.++.+....
T Consensus       468 ddtILiWdFl~~~~~~~~  485 (499)
T KOG0281|consen  468 DDTILIWDFLNGPPSAAE  485 (499)
T ss_pred             CCeEEEEEcCCCCccccc
Confidence            999999999988665433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.3e-39  Score=252.60  Aligned_cols=286  Identities=19%  Similarity=0.340  Sum_probs=248.0

Q ss_pred             CCCccCCCCCCCccc-----ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce--eEeeccCCCccEE
Q 046226           66 NPTAAAGSSSPETSS-----SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT--ECGRLKAKTSMVV  136 (434)
Q Consensus        66 ~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~  136 (434)
                      ++..++++++|.+++     ++.|.+++...++.|..+..  ++..||+++. ..||+||+.+..  ++.++.+|.+.|.
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            466788999998866     45678999988999999999  8888888875 689999998754  5888999999999


Q ss_pred             EEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec
Q 046226          137 AMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL  214 (434)
Q Consensus       137 ~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  214 (434)
                      ++.|..+  .+++|+.||+++|||++.....+.+                       .|..+|+++..+|+...|++|..
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-----------------------~~~spVn~vvlhpnQteLis~dq  144 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-----------------------QHNSPVNTVVLHPNQTELISGDQ  144 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcccchhc-----------------------cCCCCcceEEecCCcceEEeecC
Confidence            9999887  8999999999999999875554444                       58899999999999999999999


Q ss_pred             CCcEEEEEcCCCeeEEEcc-cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEe
Q 046226          215 DKTIKVWRIRDSKCIETIQ-AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT  292 (434)
Q Consensus       215 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  292 (434)
                      +|.|++||+....+...+- .....|.++.+.||| +++.+...|...+|++-.........++..++.|.+.+..+.++
T Consensus       145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS  224 (311)
T KOG0315|consen  145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS  224 (311)
T ss_pred             CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence            9999999998876655543 345689999999999 99999999999999987655555667778899999999999999


Q ss_pred             cCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeec
Q 046226          293 LDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVG  370 (434)
Q Consensus       293 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (434)
                      |++++|++++.|.+++||+.+..   ++....+.+|...++..+|+  +.||++|+.|+.+++|++..+   +.++.+.+
T Consensus       225 Pd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~---k~v~qy~g  298 (311)
T KOG0315|consen  225 PDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG---KEVRQYQG  298 (311)
T ss_pred             CCCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC---ceeeecCC
Confidence            99999999999999999998755   34445778999999999886  679999999999999999998   78899999


Q ss_pred             cccceeEEEEe
Q 046226          371 HRGPIRCAIAF  381 (434)
Q Consensus       371 h~~~v~~~~~~  381 (434)
                      |.....|++..
T Consensus       299 h~K~~vc~~ln  309 (311)
T KOG0315|consen  299 HHKAAVCVALN  309 (311)
T ss_pred             cccccEEEEee
Confidence            99988887754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-38  Score=251.48  Aligned_cols=291  Identities=18%  Similarity=0.276  Sum_probs=241.7

Q ss_pred             eeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCC---ceeEeec-cCCCccEEEEEEeCC--EEEEEEcCC
Q 046226           82 YRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE---FTECGRL-KAKTSMVVAMEVSHD--RVYAAYGDG  152 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~---~~~~~~~-~~~~~~v~~l~~~~~--~l~~~s~dg  152 (434)
                      ...++.+.+|.++|..++|   .|..||+|+.|+.||||+...   ..+...+ .+|+..|.+++|+|.  +|++|+.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            3467788999999999999   256999999999999999874   4444444 469999999999986  899999999


Q ss_pred             eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC---eeE
Q 046226          153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS---KCI  229 (434)
Q Consensus       153 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~  229 (434)
                      ++.||.-..++-.. .                   ..+.+|...|.|++|+++|++||+++.|..|-||.+..+   +++
T Consensus        84 t~~Iw~k~~~efec-v-------------------~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~  143 (312)
T KOG0645|consen   84 TVVIWKKEDGEFEC-V-------------------ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI  143 (312)
T ss_pred             eEEEeecCCCceeE-E-------------------eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence            99999754322111 1                   122389999999999999999999999999999999743   688


Q ss_pred             EEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEE
Q 046226          230 ETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIH  308 (434)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  308 (434)
                      ..++.|...|..+.|+|.. +|++++.|.+|++|+-.   .........++.+|...|.+++|++.|..|++++.|++++
T Consensus       144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~---~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~  220 (312)
T KOG0645|consen  144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE---DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS  220 (312)
T ss_pred             eeeccccccccEEEEcCCcceeEEeccCCeEEEEeec---CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence            8999999999999999987 99999999999999754   2456778889999999999999999999999999999999


Q ss_pred             EEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC---CceeeEE-EeeccccceeEEEEeecc
Q 046226          309 YWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD---GRHTMLA-VLVGHRGPIRCAIAFLGR  384 (434)
Q Consensus       309 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~-~~~~h~~~v~~~~~~~~~  384 (434)
                      ||.+..        .....|...+..++|....|++++.|+.|++|.....   ..+..+. .-..|...|+++.|.|..
T Consensus       221 Iw~~~~--------~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~  292 (312)
T KOG0645|consen  221 IWRLYT--------DLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV  292 (312)
T ss_pred             eeeecc--------CcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC
Confidence            997531        1122577889999999779999999999999987653   1222222 445789999999999953


Q ss_pred             cCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          385 FGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       385 ~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                              ..+|++|+.||.|++|.+.
T Consensus       293 --------~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 --------SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             --------CCceeecCCCceEEEEEec
Confidence                    6799999999999999975

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-40  Score=270.23  Aligned_cols=288  Identities=21%  Similarity=0.310  Sum_probs=255.5

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeE
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKI  154 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i  154 (434)
                      +......+.+.+|..+|+.+-|  +-.++++++.|++|++||..+++....+++|...|.+++|+..  ++++++.|-.+
T Consensus        95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~  174 (406)
T KOG0295|consen   95 IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA  174 (406)
T ss_pred             CCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence            4555667778899999999999  6678888999999999999999999999999999999999875  89999999999


Q ss_pred             EEeecCCC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226          155 RVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       155 ~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  233 (434)
                      ++||..+. ++++..                      .+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.
T Consensus       175 ~LWd~~~~~~c~ks~----------------------~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~  232 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSL----------------------IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP  232 (406)
T ss_pred             hheeHHHHHHHHHHh----------------------cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc
Confidence            99998753 222222                      2799999999999999999999999999999999999999999


Q ss_pred             cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC---------------CCE
Q 046226          234 AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD---------------DGL  297 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~  297 (434)
                      +|...|..+..+.|| .+++++.|.+|++|-+.      .......+..|+.+|.+++|.|.               +++
T Consensus       233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~------t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~  306 (406)
T KOG0295|consen  233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA------TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQV  306 (406)
T ss_pred             CchHhEEEEEecCCeeEEEecCCCceEEEEEec------cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccE
Confidence            999999999999999 99999999999999765      34445667789999999999762               258


Q ss_pred             EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccce
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPI  375 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  375 (434)
                      +.+++.|++|++||+.+....    .++.+|...|..++|+  |+||+++.+|+++++||+++.   ++...+..|..-|
T Consensus       307 l~s~SrDktIk~wdv~tg~cL----~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hfv  379 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMCL----FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHFV  379 (406)
T ss_pred             EEeecccceEEEEeccCCeEE----EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCccee
Confidence            999999999999999765433    4677999999999998  889999999999999999998   8999999999999


Q ss_pred             eEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          376 RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                      ++++|..+         ..+++||+-|.++++|.-
T Consensus       380 t~lDfh~~---------~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  380 TSLDFHKT---------APYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEecCCC---------CceEEeccccceeeeeec
Confidence            99999988         679999999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-39  Score=290.51  Aligned_cols=354  Identities=20%  Similarity=0.351  Sum_probs=282.9

Q ss_pred             CCCCccc-ccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEE----cCCEEEEEeCCCeEEE
Q 046226           47 FSSPISL-HTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV----GNGFIYTGSDSNVIRI  116 (434)
Q Consensus        47 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~----~~~~l~tg~~dg~i~i  116 (434)
                      ..+.... |..|+....+.+.+..+++++.+..++.|     .|.+.|+||.|.|.++.|    .-.+|++|..|+++++
T Consensus        96 ~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~v  175 (775)
T KOG0319|consen   96 LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRV  175 (775)
T ss_pred             HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEE
Confidence            3344444 88888888888889999999999776655     568999999999999999    3457899999999999


Q ss_pred             ecCCCcee-EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeee-------ccC-----------
Q 046226          117 WKQPEFTE-CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLAT-------IPK-----------  175 (434)
Q Consensus       117 wd~~~~~~-~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~-----------  175 (434)
                      ||+.+... +..+..|.+.|++++|.++  .+++++.|..+.+||+...+..+...+..       ..+           
T Consensus       176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T  255 (775)
T KOG0319|consen  176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT  255 (775)
T ss_pred             EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence            99986554 7788899999999999997  78999999999999985443322221100       000           


Q ss_pred             -------------C-----------CC-----------------------------------------------------
Q 046226          176 -------------T-----------GG-----------------------------------------------------  178 (434)
Q Consensus       176 -------------~-----------~~-----------------------------------------------------  178 (434)
                                   .           ..                                                     
T Consensus       256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e  335 (775)
T KOG0319|consen  256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE  335 (775)
T ss_pred             ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence                         0           00                                                     


Q ss_pred             -----------ceeEEEe---ccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC----eeEEEcccCccCeE
Q 046226          179 -----------AVRNLIV---GKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS----KCIETIQAHSEPIN  240 (434)
Q Consensus       179 -----------~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~  240 (434)
                                 .++....   ....+.+|...|.+++...+|.+|++|+.|.++++|.++.+    -++....+|.+.|.
T Consensus       336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg  415 (775)
T KOG0319|consen  336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG  415 (775)
T ss_pred             cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence                       0000000   00024579999999996667889999999999999987443    35666778999999


Q ss_pred             EEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEE----EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          241 ALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLIL----TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       241 ~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      +++++..+  +|++++.|+++++|++........ ....    ....|...|++++++|+..++++|+.|.+.+||++. 
T Consensus       416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-  493 (775)
T KOG0319|consen  416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-  493 (775)
T ss_pred             eeeecccCccEEEEecCCceEEEecCCCcccccc-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-
Confidence            99998777  999999999999999983111111 2222    456789999999999999999999999999999986 


Q ss_pred             ccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCc
Q 046226          315 FSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDE  392 (434)
Q Consensus       315 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  392 (434)
                         .......+.+|...|+|+.|+..  .+++++.|++|+||.+.+.   .++.++.||...|..+.|..+         
T Consensus       494 ---~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~aVlra~F~~~---------  558 (775)
T KOG0319|consen  494 ---QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSAVLRASFIRN---------  558 (775)
T ss_pred             ---CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccceeEeeeeeeC---------
Confidence               55666788999999999999865  9999999999999999987   899999999999999999988         


Q ss_pred             ccEEEEeecCCeEEEEecCCCCccc
Q 046226          393 YCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       393 ~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      +..|+|++.||-|++|++++....+
T Consensus       559 ~~qliS~~adGliKlWnikt~eC~~  583 (775)
T KOG0319|consen  559 GKQLISAGADGLIKLWNIKTNECEM  583 (775)
T ss_pred             CcEEEeccCCCcEEEEeccchhhhh
Confidence            9999999999999999999887543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.9e-40  Score=275.72  Aligned_cols=279  Identities=21%  Similarity=0.287  Sum_probs=242.1

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCce
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVK  166 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~  166 (434)
                      -...|..+.|  +|+.|++|+..|.+.+|+.........++.|..+|.++.|+.+  .+++|..+|.|++|+........
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            3457899999  8999999999999999998766655667899999999999987  89999999999999876432211


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcC
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD  246 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  246 (434)
                      ..                      ..|...|++++|+|+...|+++++||+|+|||....+....+.+|.-.|.+++|+|
T Consensus       175 ~~----------------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP  232 (464)
T KOG0284|consen  175 IQ----------------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP  232 (464)
T ss_pred             hh----------------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC
Confidence            11                      13558999999999999999999999999999999988889999999999999999


Q ss_pred             CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc
Q 046226          247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL  325 (434)
Q Consensus       247 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  325 (434)
                      .. ++++++.|..|++||.+      ....+.++..|...|..+.|++++++|++++.|..+++||++..+.    ...+
T Consensus       233 ~kgLiasgskDnlVKlWDpr------Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE----l~~~  302 (464)
T KOG0284|consen  233 TKGLIASGSKDNLVKLWDPR------SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE----LFTY  302 (464)
T ss_pred             ccceeEEccCCceeEeecCC------CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH----HHHh
Confidence            88 99999999999999988      6667788899999999999999999999999999999999974333    3456


Q ss_pred             cCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC
Q 046226          326 QGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD  402 (434)
Q Consensus       326 ~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D  402 (434)
                      ++|...|+++.|+   .++|.+|+.||.|..|.+....  .....-.+|...|++++|+|-         |.+|++|+.|
T Consensus       303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPl---------Ghil~tgsnd  371 (464)
T KOG0284|consen  303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPL---------GHILATGSND  371 (464)
T ss_pred             hcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeecccc---------ceeEeecCCC
Confidence            7999999999986   5799999999999999998431  233334589999999999999         9999999999


Q ss_pred             CeEEEEecCC
Q 046226          403 GVLKMWRVTR  412 (434)
Q Consensus       403 g~v~iw~~~~  412 (434)
                      .++++|.-..
T Consensus       372 ~t~rfw~r~r  381 (464)
T KOG0284|consen  372 RTVRFWTRNR  381 (464)
T ss_pred             cceeeeccCC
Confidence            9999998654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=9e-39  Score=256.81  Aligned_cols=285  Identities=21%  Similarity=0.315  Sum_probs=245.4

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecC-CCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeec
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQ-PEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRS  159 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~  159 (434)
                      +-.+.+|.+.|+++.|  +|.+||+|+.|..|.+|++ ...+....+++|.++|..+.|..+  .+++++.|.+++.||+
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            3446789999999999  9999999999999999995 445566778899999999999987  8999999999999999


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQAHSEP  238 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  238 (434)
                      ++++.++..+                      +|..-|+.+.-..-|. ++.+++.||++++||+++...++++. ....
T Consensus       120 ~tG~~~rk~k----------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq  176 (338)
T KOG0265|consen  120 ETGKRIRKHK----------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ  176 (338)
T ss_pred             ccceeeehhc----------------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-ccee
Confidence            9998887775                      6999999988554444 56688999999999999988888775 4668


Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      ++++.|..++ .+++|+-|+.|++||++      .......+.+|..+|+.+..+++|.++.+-+.|.++++||++....
T Consensus       177 ltAv~f~d~s~qv~sggIdn~ikvWd~r------~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p  250 (338)
T KOG0265|consen  177 LTAVGFKDTSDQVISGGIDNDIKVWDLR------KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP  250 (338)
T ss_pred             EEEEEecccccceeeccccCceeeeccc------cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence            9999999888 99999999999999998      4556778899999999999999999999999999999999987766


Q ss_pred             cccccCcccCccc----ceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCC
Q 046226          318 QLQYGGALQGHTH----AVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETED  391 (434)
Q Consensus       318 ~~~~~~~~~~~~~----~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  391 (434)
                      .......+.+|..    .....+|+  ++.+.+|+.|..+++||....   ..+..+.||.+.|.+++|+|.        
T Consensus       251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~--------  319 (338)
T KOG0265|consen  251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPT--------  319 (338)
T ss_pred             CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCC--------
Confidence            6555555555543    22444554  669999999999999999886   789999999999999999999        


Q ss_pred             cccEEEEeecCCeEEEEec
Q 046226          392 EYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       392 ~~~~l~s~~~Dg~v~iw~~  410 (434)
                       ..+|.+++.|.+|++=++
T Consensus       320 -e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  320 -EPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             -CcEEEEeccCceeEeecc
Confidence             899999999999987443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.3e-38  Score=260.02  Aligned_cols=318  Identities=15%  Similarity=0.139  Sum_probs=264.9

Q ss_pred             CCcccccCCCCCCCCCCCCCccCCCCCCCc-----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC
Q 046226           49 SPISLHTSPLSSPRHPFNPTAAAGSSSPET-----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE  121 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~  121 (434)
                      ..+..|+.++++....|+...+++++.|..     +.+......+.+|++.|+|+.|  +|.+||||+-+|.|+||+..+
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st  137 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST  137 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence            457789999999988888889999887754     5555667889999999999999  999999999999999999999


Q ss_pred             ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          122 FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      +.....+...-..+.-+.|+|.  .|++|+.||.+.+|.+.++...+.+                      .+|..++++
T Consensus       138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~----------------------~Gh~~~ct~  195 (399)
T KOG0296|consen  138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM----------------------SGHNSPCTC  195 (399)
T ss_pred             CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe----------------------cCCCCCccc
Confidence            9988888766778899999996  7889999999999999876444443                      379999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC-ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226          200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH-SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  277 (434)
                      =.|.|+|+.++++..||+|++||+.+++++..+... .....++.++..+ .++.|..++.+++-+..      ..+.+.
T Consensus       196 G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~------sgKVv~  269 (399)
T KOG0296|consen  196 GEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG------SGKVVN  269 (399)
T ss_pred             ccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccc------cceEEE
Confidence            999999999999999999999999999998888742 3456788888888 88888888888887543      222222


Q ss_pred             Eec--------ccccCeEEE---EEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC-CEEEEe
Q 046226          278 TLT--------AKYSPVKTL---TLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA-NYVISG  345 (434)
Q Consensus       278 ~~~--------~~~~~v~~~---~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~  345 (434)
                      ...        .+...+.++   .++..-.+.++|+.||+|.|||+........     -.|...|+.+.|.+ .+|+++
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-----c~he~~V~~l~w~~t~~l~t~  344 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-----CEHEDGVTKLKWLNTDYLLTA  344 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-----ccCCCceEEEEEcCcchheee
Confidence            222        233344444   4454567889999999999999864433322     26778899999987 699999


Q ss_pred             cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          346 SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      +.||.|+.||.+++   +++..+.||...|.+++++|+         .++++|+|.|++.+|+++.
T Consensus       345 c~~g~v~~wDaRtG---~l~~~y~GH~~~Il~f~ls~~---------~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  345 CANGKVRQWDARTG---QLKFTYTGHQMGILDFALSPQ---------KRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ccCceEEeeecccc---ceEEEEecCchheeEEEEcCC---------CcEEEEecCCCeEEEEecC
Confidence            99999999999999   899999999999999999999         8999999999999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2e-38  Score=269.43  Aligned_cols=290  Identities=22%  Similarity=0.342  Sum_probs=246.3

Q ss_pred             eeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc----eeEeecc----------CCCccEEEEEEeCC--
Q 046226           83 RCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF----TECGRLK----------AKTSMVVAMEVSHD--  143 (434)
Q Consensus        83 ~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~----------~~~~~v~~l~~~~~--  143 (434)
                      .....+..|..+|.+++|   ...+|++|+.|-+.++|++...    .....++          .....|++++|+.+  
T Consensus       169 ~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~  248 (524)
T KOG0273|consen  169 SSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT  248 (524)
T ss_pred             ccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence            334455669999999999   4568999999999999998641    1111111          12357999999965  


Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI  223 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  223 (434)
                      .|++|+.||.+++|+.... .+..+                      ..|.++|.++.|+..|.+|++++.|+++.+||.
T Consensus       249 ~LatG~~~G~~riw~~~G~-l~~tl----------------------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~  305 (524)
T KOG0273|consen  249 LLATGSEDGEARIWNKDGN-LISTL----------------------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA  305 (524)
T ss_pred             eEEEeecCcEEEEEecCch-hhhhh----------------------hccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence            9999999999999996532 22222                      259999999999999999999999999999999


Q ss_pred             CCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC
Q 046226          224 RDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT  303 (434)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  303 (434)
                      .++...+.+..|..+-..+.|-.+..+++++.|+.|+++.+.      ...+..++.+|.+.|.++.|.|.+.+|++++.
T Consensus       306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~------~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd  379 (524)
T KOG0273|consen  306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG------EDRPVKTFIGHHGEVNALKWNPTGSLLASCSD  379 (524)
T ss_pred             cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec------CCCcceeeecccCceEEEEECCCCceEEEecC
Confidence            999999999989888788999988899999999999999887      45567778889999999999999999999999


Q ss_pred             CCeEEEEEcCcccccccccCcccCcccceEEEEee-----------CCEEEEecCCCcEEEEeccCCCceeeEEEeeccc
Q 046226          304 DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-----------ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR  372 (434)
Q Consensus       304 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  372 (434)
                      |++++||.+.    .......+.+|...|..+.|+           +..+++++.|++|++||+..+   .++..|..|.
T Consensus       380 D~TlkiWs~~----~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~  452 (524)
T KOG0273|consen  380 DGTLKIWSMG----QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQ  452 (524)
T ss_pred             CCeeEeeecC----CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCC
Confidence            9999999964    233345677999999888875           338999999999999999998   8999999999


Q ss_pred             cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      .+|.+++|+|+         |+++|+|+.||.|.||+.+.++...
T Consensus       453 ~pVysvafS~~---------g~ylAsGs~dg~V~iws~~~~~l~~  488 (524)
T KOG0273|consen  453 EPVYSVAFSPN---------GRYLASGSLDGCVHIWSTKTGKLVK  488 (524)
T ss_pred             CceEEEEecCC---------CcEEEecCCCCeeEeccccchheeE
Confidence            99999999999         9999999999999999999988643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.7e-38  Score=265.56  Aligned_cols=315  Identities=18%  Similarity=0.259  Sum_probs=265.4

Q ss_pred             CCcccccCCCCCCCCCCCCC-ccCCCCCCCcccceeeeE------E---Ee------ec----cccEEEEEE--cCCEEE
Q 046226           49 SPISLHTSPLSSPRHPFNPT-AAAGSSSPETSSSYRCIS------S---VL------KK----DGQILCIAV--GNGFIY  106 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~---~~------~h----~~~v~~~~~--~~~~l~  106 (434)
                      +.++ |.+++......|-.. .++.++.+-+.+.|+...      .   |+      ++    +..|++++|  +|++||
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            3344 888888888877776 677777777777777653      1   10      11    357999999  799999


Q ss_pred             EEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEE
Q 046226          107 TGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLI  184 (434)
Q Consensus       107 tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (434)
                      +|+.||.++||+. ++.++.++..|.++|.++.|+..  +|++++.|+++.+||..++.....+.+              
T Consensus       252 tG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~--------------  316 (524)
T KOG0273|consen  252 TGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF--------------  316 (524)
T ss_pred             EeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee--------------
Confidence            9999999999995 67888899999999999999986  899999999999999987766655542              


Q ss_pred             eccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 046226          185 VGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWR  263 (434)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd  263 (434)
                              |..+-.++.|- +...|++++.|+.|+|+.+....++.++.+|.+.|.++.|+|.+ +|++++.|++++||.
T Consensus       317 --------~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  317 --------HSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS  387 (524)
T ss_pred             --------ccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence                    77776788885 45678999999999999999999999999999999999999999 999999999999998


Q ss_pred             cccccCcceeEEEEEecccccCeEEEEEecCC---------CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEE
Q 046226          264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDD---------GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC  334 (434)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  334 (434)
                      +.      .......+..|...|..+.|+|.|         ..+++++.|++|++||+...    .....+..|..+|.+
T Consensus       388 ~~------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g----v~i~~f~kH~~pVys  457 (524)
T KOG0273|consen  388 MG------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG----VPIHTLMKHQEPVYS  457 (524)
T ss_pred             cC------CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----ceeEeeccCCCceEE
Confidence            66      344556778899999999999964         47999999999999998643    344567789999999


Q ss_pred             EEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          335 LASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       335 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      ++|+  |+++++|+.||.|.+|+++++   +.++.+.+ .+.|..++|+.+         |..|..+-.||.+.+-|+.
T Consensus       458 vafS~~g~ylAsGs~dg~V~iws~~~~---~l~~s~~~-~~~Ifel~Wn~~---------G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  458 VAFSPNGRYLASGSLDGCVHIWSTKTG---KLVKSYQG-TGGIFELCWNAA---------GDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEecCCCcEEEecCCCCeeEeccccch---heeEeecC-CCeEEEEEEcCC---------CCEEEEEecCCCceEEEec
Confidence            9997  779999999999999999998   67777665 556999999988         8999999999999998875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-38  Score=249.21  Aligned_cols=279  Identities=18%  Similarity=0.242  Sum_probs=223.1

Q ss_pred             CcccccCCCCCCCCCC-CCCccCCCCCCCcccc----------eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEE
Q 046226           50 PISLHTSPLSSPRHPF-NPTAAAGSSSPETSSS----------YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRI  116 (434)
Q Consensus        50 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~i  116 (434)
                      .+.+|...+.+..-.. ++..+.+++.|.++-.          +..++.+.||+..|..+..  +|++.++++.|+++++
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl   89 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL   89 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence            4556666665544333 3556666666665444          4447889999999999998  9999999999999999


Q ss_pred             ecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC
Q 046226          117 WKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM  194 (434)
Q Consensus       117 wd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (434)
                      ||+.+++....+.+|...|.+++|++|  .+++|+.|.+|++|++..........                     ..+.
T Consensus        90 WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~---------------------~~~~  148 (315)
T KOG0279|consen   90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE---------------------DSHR  148 (315)
T ss_pred             EEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec---------------------CCCc
Confidence            999999999999999999999999997  99999999999999986443222221                     1247


Q ss_pred             CCeEEEEEecC--CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226          195 GPITSIAINVS--DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ  271 (434)
Q Consensus       195 ~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~  271 (434)
                      +.|.|+.|+|+  ..+|++++.|++|++||+++.+....+.+|.+.++.++++||| ++++|+.||.+.+||++      
T Consensus       149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~------  222 (315)
T KOG0279|consen  149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN------  222 (315)
T ss_pred             CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc------
Confidence            89999999998  7899999999999999999999999999999999999999999 99999999999999998      


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc-----ccceEEEEee--CCEEEE
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH-----THAVMCLASV--ANYVIS  344 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~--~~~l~s  344 (434)
                      ..+... ...+...|.+++|+|+.-.|+.+. +..|+|||+........+.....+.     ......++|+  |..|++
T Consensus       223 ~~k~ly-sl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~  300 (315)
T KOG0279|consen  223 EGKNLY-SLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA  300 (315)
T ss_pred             CCceeE-eccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence            222233 345778999999999866666555 4559999998765544443333332     2233556676  889999


Q ss_pred             ecCCCcEEEEecc
Q 046226          345 GSADSTSRVWARE  357 (434)
Q Consensus       345 ~~~dg~i~iwd~~  357 (434)
                      |-.|+.|++|.+.
T Consensus       301 g~td~~irv~qv~  313 (315)
T KOG0279|consen  301 GYTDNVIRVWQVA  313 (315)
T ss_pred             eecCCcEEEEEee
Confidence            9999999999875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-38  Score=265.46  Aligned_cols=288  Identities=18%  Similarity=0.268  Sum_probs=237.7

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC---ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeE
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE---FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKI  154 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i  154 (434)
                      .+..+.+..|++.|+-+.|  +|++||+++.|.+..+|++..   .+...++.+|..+|..+.|+||  +|++|+.|..+
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~  293 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL  293 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence            3445667889999999999  899999999999999998644   4557888999999999999998  89999999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  234 (434)
                      .+||+.++.....+..                     ++...+.+++|.|||..+++|+.|+.|..||++ |..+..+++
T Consensus       294 ~lwDv~tgd~~~~y~~---------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~g  351 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPS---------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEG  351 (519)
T ss_pred             eeccCCcchhhhhccc---------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccc
Confidence            9999998877666531                     356789999999999999999999999999986 454555554


Q ss_pred             C-ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226          235 H-SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK  312 (434)
Q Consensus       235 ~-~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  312 (434)
                      - ...|.++++.+|| .+++.+.|..|++++.....       ...+.....+|++++++.+++++++.-.+..|++||+
T Consensus       352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~-------dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl  424 (519)
T KOG0293|consen  352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV-------DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDL  424 (519)
T ss_pred             cccceeEEEEEcCCCcEEEEEecccceeeechhhhh-------hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence            3 3569999999999 88888899999999876211       1113334578999999999999999999999999999


Q ss_pred             CcccccccccCcccCcccce----EEEEe-eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCC
Q 046226          313 GWFSAQLQYGGALQGHTHAV----MCLAS-VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGE  387 (434)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~v----~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  387 (434)
                      .......+    +.||...-    .|+.- +..++++|++|+.|+||+..++   +++.++.||...|++++|+|..   
T Consensus       425 ~e~~lv~k----Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~---  494 (519)
T KOG0293|consen  425 EENKLVRK----YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPAD---  494 (519)
T ss_pred             chhhHHHH----hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCC---
Confidence            74444333    44554322    23332 2359999999999999999998   8999999999999999999986   


Q ss_pred             CCCCcccEEEEeecCCeEEEEecCCC
Q 046226          388 ETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       388 ~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                           ..++|+||.||+||||.....
T Consensus       495 -----p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  495 -----PEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             -----HHHhhccCCCCeEEEecCCcc
Confidence                 789999999999999987643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.7e-39  Score=276.84  Aligned_cols=288  Identities=17%  Similarity=0.270  Sum_probs=246.3

Q ss_pred             eeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCC-ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEE
Q 046226           82 YRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE-FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIR  155 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~  155 (434)
                      .+.+.++.+|...|+++.|   .+.+|++|+.|+.|+||++-+ +.++.++.+|..+|.+++|+++  .+++++.|+.|+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            3447889999999999999   789999999999999999876 8999999999999999999987  899999999999


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~  234 (434)
                      +||+++++....+.                       -...+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..
T Consensus       284 lwDtETG~~~~~f~-----------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~  340 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-----------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR  340 (503)
T ss_pred             eeccccceEEEEEe-----------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence            99999998887773                       45578999999998 8899999999999999999999999999


Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          235 HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       235 ~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      |-+.|..+.|-+++ ++++.+.|+.++||+.+.   ....+.+  .....-...++..+|++.++++-+.|..|.+|.+.
T Consensus       341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~---~v~ik~i--~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~  415 (503)
T KOG0282|consen  341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRI---PVPIKNI--ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV  415 (503)
T ss_pred             hhhheeeeEEccCCceEeeeccCccEEEEEcCC---Cccchhh--cchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence            99999999999999 999999999999999771   1111122  22223356688999999999999999999999864


Q ss_pred             cccccccccCcccCcccceE----EEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCC
Q 046226          314 WFSAQLQYGGALQGHTHAVM----CLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEET  389 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~v~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  389 (434)
                      .. -.......+.+|...=.    .++++|++|++|+.||.+.+||.++-   +.+..+++|.+++..+.|+|..     
T Consensus       416 ~~-~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~---kl~~~lkah~~~ci~v~wHP~e-----  486 (503)
T KOG0282|consen  416 PP-FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT---KLVSKLKAHDQPCIGVDWHPVE-----  486 (503)
T ss_pred             cc-cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh---hhhhccccCCcceEEEEecCCC-----
Confidence            32 22233356678864432    23446889999999999999999987   7888999999999999999985     


Q ss_pred             CCcccEEEEeecCCeEEEEe
Q 046226          390 EDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       390 ~~~~~~l~s~~~Dg~v~iw~  409 (434)
                         ...+||+|.||.|++|+
T Consensus       487 ---~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  487 ---PSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ---cceeEecccCceeEecC
Confidence               67899999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-37  Score=240.26  Aligned_cols=279  Identities=16%  Similarity=0.244  Sum_probs=235.5

Q ss_pred             eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeec
Q 046226           84 CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRS  159 (434)
Q Consensus        84 ~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~  159 (434)
                      ..+.+..|.++|.++.|  +|++.+|++.|.+|++||...+.+++++.+|...|..++.+.|  .+++|+.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            34567889999999999  9999999999999999999999999999999999999998776  8999999999999999


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC--CeeEEEcccCcc
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD--SKCIETIQAHSE  237 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~  237 (434)
                      .+++..+.+.                      +|.+.|+.++|+.+...+++|+.|..+++||.++  .++++.+....+
T Consensus        89 ~TGkv~Rr~r----------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D  146 (307)
T KOG0316|consen   89 NTGKVDRRFR----------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD  146 (307)
T ss_pred             ccCeeeeecc----------------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence            9998887774                      7999999999999999999999999999999975  478899988899


Q ss_pred             CeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          238 PINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       238 ~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      .|.++.+. +..+++|+.||++|.||++      .......+  ...+|++++|+++++..++++.|+++++.|-.    
T Consensus       147 ~V~Si~v~-~heIvaGS~DGtvRtydiR------~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~----  213 (307)
T KOG0316|consen  147 GVSSIDVA-EHEIVAGSVDGTVRTYDIR------KGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKE----  213 (307)
T ss_pred             ceeEEEec-ccEEEeeccCCcEEEEEee------cceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccc----
Confidence            99999987 3389999999999999998      23332222  34589999999999999999999999999954    


Q ss_pred             cccccCcccCcccceEEEE----eeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccc-eeEEEEeecccCCCCCCc
Q 046226          318 QLQYGGALQGHTHAVMCLA----SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP-IRCAIAFLGRFGEETEDE  392 (434)
Q Consensus       318 ~~~~~~~~~~~~~~v~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~  392 (434)
                      ..++.+...+|...-..+.    -+..++++|++||.|++||+.+.   ..+..+..|... |.++.++|.         
T Consensus       214 tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~---------  281 (307)
T KOG0316|consen  214 TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPT---------  281 (307)
T ss_pred             hhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccC---------
Confidence            4445556677876543332    34569999999999999999987   777888888887 889999998         


Q ss_pred             ccEEEEeecCCeEEEEec
Q 046226          393 YCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       393 ~~~l~s~~~Dg~v~iw~~  410 (434)
                      ..-++++. ++.+.+|.-
T Consensus       282 ~~~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  282 MDDFITAT-GHGDLFWYQ  298 (307)
T ss_pred             ccceeEec-CCceeceee
Confidence            44455554 345666653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.8e-39  Score=264.73  Aligned_cols=266  Identities=21%  Similarity=0.344  Sum_probs=232.5

Q ss_pred             CCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEE
Q 046226           64 PFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAM  138 (434)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  138 (434)
                      .++...+.++..|.+++.|.     |+..+.||+|.|.|+.|+.+.+++|+.|.+|+|||+++++++.++-+|...|..+
T Consensus       204 QYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl  283 (499)
T KOG0281|consen  204 QYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL  283 (499)
T ss_pred             EecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence            45677788888888877664     5788999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcE
Q 046226          139 EVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTI  218 (434)
Q Consensus       139 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  218 (434)
                      .|+.+++++++.|.++.+||+.....+....                   .+.+|...|+.+.|+  .+++++++.|.+|
T Consensus       284 rf~ng~mvtcSkDrsiaVWdm~sps~it~rr-------------------VLvGHrAaVNvVdfd--~kyIVsASgDRTi  342 (499)
T KOG0281|consen  284 RFSNGYMVTCSKDRSIAVWDMASPTDITLRR-------------------VLVGHRAAVNVVDFD--DKYIVSASGDRTI  342 (499)
T ss_pred             EEeCCEEEEecCCceeEEEeccCchHHHHHH-------------------HHhhhhhheeeeccc--cceEEEecCCceE
Confidence            9999999999999999999998665433222                   234899999999995  6799999999999


Q ss_pred             EEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226          219 KVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL  298 (434)
Q Consensus       219 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  298 (434)
                      ++|++.++++++++.+|...|.|+.+. +.++++|+.|.+|++||+.      .......+.+|+.-|.++.|.  .+.+
T Consensus       343 kvW~~st~efvRtl~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~------~G~cLRvLeGHEeLvRciRFd--~krI  413 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIE------CGACLRVLEGHEELVRCIRFD--NKRI  413 (499)
T ss_pred             EEEeccceeeehhhhcccccceehhcc-CeEEEecCCCceEEEEecc------ccHHHHHHhchHHhhhheeec--Ccee
Confidence            999999999999999999999999875 3399999999999999987      566777889999999999995  5899


Q ss_pred             EEEcCCCeEEEEEcCccccccc-----ccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226          299 YGGCTDGYIHYWHKGWFSAQLQ-----YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       299 ~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ++|..||+|++||+........     ....+..|.+.|..+.|+...+++++.|.+|.|||..++
T Consensus       414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence            9999999999999875543321     223456789999999999999999999999999999876

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.5e-36  Score=264.42  Aligned_cols=280  Identities=27%  Similarity=0.462  Sum_probs=240.8

Q ss_pred             EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCC
Q 046226           86 SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTW  161 (434)
Q Consensus        86 ~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~  161 (434)
                      .++.+|.++|++++|  ++++|++++.||.|++|++.+++....+..|...+..+.|.++  .+++++.||.|++||+..
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            457789999999999  7799999999999999999998888888899999999999987  789999999999999986


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA  241 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  241 (434)
                      .+....+.                      .|...+.++.|++++.++++++.||.|.+||+.+++....+..|...+.+
T Consensus        83 ~~~~~~~~----------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~  140 (289)
T cd00200          83 GECVRTLT----------------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS  140 (289)
T ss_pred             ccceEEEe----------------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence            54444332                      48889999999999888888888999999999999999999889999999


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc
Q 046226          242 LVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ  320 (434)
Q Consensus       242 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  320 (434)
                      +.++|++ ++++++.|+.|++||++      .......+..+...+.++.|+|+++.+++++.|+.|++||++....   
T Consensus       141 ~~~~~~~~~l~~~~~~~~i~i~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---  211 (289)
T cd00200         141 VAFSPDGTFVASSSQDGTIKLWDLR------TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC---  211 (289)
T ss_pred             EEEcCcCCEEEEEcCCCcEEEEEcc------ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce---
Confidence            9999988 77777779999999987      2333444557778999999999999999999999999999865322   


Q ss_pred             ccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEE
Q 046226          321 YGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICT  398 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  398 (434)
                       ...+..|...+.++.+++  .++++++.||.|++||+.++   .....+..|...|.+++|+|+         +.+|++
T Consensus       212 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~---------~~~l~~  278 (289)
T cd00200         212 -LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPD---------GKRLAS  278 (289)
T ss_pred             -ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCC---------CCEEEE
Confidence             234446777899999875  57777777999999999876   677777899999999999998         889999


Q ss_pred             eecCCeEEEEe
Q 046226          399 GSLDGVLKMWR  409 (434)
Q Consensus       399 ~~~Dg~v~iw~  409 (434)
                      ++.||.|++|+
T Consensus       279 ~~~d~~i~iw~  289 (289)
T cd00200         279 GSADGTIRIWD  289 (289)
T ss_pred             ecCCCeEEecC
Confidence            99999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.8e-38  Score=283.60  Aligned_cols=282  Identities=18%  Similarity=0.352  Sum_probs=234.3

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeec
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS  159 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~  159 (434)
                      --|..++..-...++|..|  ++.+||.|..|..|++|.+...+ +..++... .+.       .+=+.+.|-.+.+.|-
T Consensus       368 Sic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~-~l~-------~~d~~sad~~~~~~D~  438 (707)
T KOG0263|consen  368 SICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDAS-DLS-------NIDTESADVDVDMLDD  438 (707)
T ss_pred             cEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchh-hhc-------cccccccchhhhhccc
Confidence            3466777777778999999  78899999999999999987543 23333211 111       1123344444555554


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCe
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI  239 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v  239 (434)
                      ......+.+                      .+|.++|..+.|+|+.++|+++++|+++++|.+.+..++..+++|..+|
T Consensus       439 ~~~~~~~~L----------------------~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PV  496 (707)
T KOG0263|consen  439 DSSGTSRTL----------------------YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPV  496 (707)
T ss_pred             cCCceeEEe----------------------ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcce
Confidence            433222222                      3799999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226          240 NALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       240 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  318 (434)
                      .++.|+|.| ++++++.|++-++|...      ...+...+.+|.+.|.|+.|+|+..++++|+.|.+|++||+.+... 
T Consensus       497 wdV~F~P~GyYFatas~D~tArLWs~d------~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-  569 (707)
T KOG0263|consen  497 WDVQFAPRGYYFATASHDQTARLWSTD------HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-  569 (707)
T ss_pred             eeEEecCCceEEEecCCCceeeeeecc------cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-
Confidence            999999999 99999999999999876      3556778889999999999999999999999999999999875543 


Q ss_pred             ccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE
Q 046226          319 LQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI  396 (434)
Q Consensus       319 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  396 (434)
                         ...+.||.++|.+++++  |.+|++|+.||.|.+||+.++   ..+..+.+|.+.|.++.|+.+         |..|
T Consensus       570 ---VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~---~~v~~l~~Ht~ti~SlsFS~d---------g~vL  634 (707)
T KOG0263|consen  570 ---VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG---SLVKQLKGHTGTIYSLSFSRD---------GNVL  634 (707)
T ss_pred             ---EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC---cchhhhhcccCceeEEEEecC---------CCEE
Confidence               34567999999999886  789999999999999999998   888999999999999999999         9999


Q ss_pred             EEeecCCeEEEEecCCCCcc
Q 046226          397 CTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       397 ~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      |+||.|.+|++||+......
T Consensus       635 asgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  635 ASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             EecCCCCeEEEEEchhhccc
Confidence            99999999999999865543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=266.48  Aligned_cols=339  Identities=20%  Similarity=0.314  Sum_probs=264.1

Q ss_pred             cCCCCCCCCCCCCCccCCCCCC--------C----cccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226           55 TSPLSSPRHPFNPTAAAGSSSP--------E----TSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~  120 (434)
                      +.++.+..++|+++.++.+...        +    ....|...+++.+|...|+++.|  |.++|++|+.|-+++||++.
T Consensus        96 k~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~  175 (893)
T KOG0291|consen   96 KRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVD  175 (893)
T ss_pred             cCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEec
Confidence            4667778888998877765432        1    24567778899999999999999  89999999999999999988


Q ss_pred             Ccee--EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCC------------------------CCceee---E
Q 046226          121 EFTE--CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWD------------------------NGVKHV---K  169 (434)
Q Consensus       121 ~~~~--~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~------------------------~~~~~~---~  169 (434)
                      ..+.  ...+.+|...|.+.-|..+  .+++.+.||.+.+|.....                        +.....   +
T Consensus       176 ~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k  255 (893)
T KOG0291|consen  176 GNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK  255 (893)
T ss_pred             cccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE
Confidence            7665  6678899999999999877  8999999999999987611                        000000   0


Q ss_pred             --eeeccCCCCcee---------EEEec-----------cc-----cccCcCCCeEEEEEecCCCEEEEEecC-CcEEEE
Q 046226          170 --LATIPKTGGAVR---------NLIVG-----------KD-----KMMKHMGPITSIAINVSDDTLYSASLD-KTIKVW  221 (434)
Q Consensus       170 --~~~~~~~~~~~~---------~~~~~-----------~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vw  221 (434)
                        ...+......+.         .+..+           ++     .+.-...+|..++|+..|.+|+.|+.. |.+.||
T Consensus       256 ~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVw  335 (893)
T KOG0291|consen  256 TKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVW  335 (893)
T ss_pred             EEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEE
Confidence              000000000000         00000           00     001133578888898889999988754 799999


Q ss_pred             EcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEE
Q 046226          222 RIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG  300 (434)
Q Consensus       222 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  300 (434)
                      +..+...+...++|...+++++++||| ++++|+.||.|+|||..      ..-...++..|...|+.+.|+..|+.+++
T Consensus       336 eWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~------SgfC~vTFteHts~Vt~v~f~~~g~~lls  409 (893)
T KOG0291|consen  336 EWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ------SGFCFVTFTEHTSGVTAVQFTARGNVLLS  409 (893)
T ss_pred             EeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc------CceEEEEeccCCCceEEEEEEecCCEEEE
Confidence            999988888999999999999999999 99999999999999976      55577889999999999999999999999


Q ss_pred             EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC-cEEEEeccCCCceeeEEEeeccccceeE
Q 046226          301 GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS-TSRVWAREQDGRHTMLAVLVGHRGPIRC  377 (434)
Q Consensus       301 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~  377 (434)
                      .+.||+|+.||+.....-..+..   .......|++.+  |..+++|+.|. .|.+|++++|   +.+..+.||.++|.+
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~---P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~  483 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTS---PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSG  483 (893)
T ss_pred             eecCCeEEeeeecccceeeeecC---CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCccee
Confidence            99999999999865443332211   111233556655  88999999887 6999999999   899999999999999


Q ss_pred             EEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      ++|+|.         +..|+|+|.|.+||+|++-...
T Consensus       484 l~f~~~---------~~~LaS~SWDkTVRiW~if~s~  511 (893)
T KOG0291|consen  484 LSFSPD---------GSLLASGSWDKTVRIWDIFSSS  511 (893)
T ss_pred             eEEccc---------cCeEEeccccceEEEEEeeccC
Confidence            999999         8999999999999999987653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.5e-36  Score=280.87  Aligned_cols=291  Identities=25%  Similarity=0.430  Sum_probs=243.3

Q ss_pred             ccceeeeEEEeec-cccEEEEEE--cCCEEEEEeCCCeEEEecCCCce--eEeeccCCCccEEEEEEeCC--EEEEEEcC
Q 046226           79 SSSYRCISSVLKK-DGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT--ECGRLKAKTSMVVAMEVSHD--RVYAAYGD  151 (434)
Q Consensus        79 ~~~~~~~~~~~~h-~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s~d  151 (434)
                      ...+.....+.+| ...|.|+.|  +|+.|++++.|+.+++|+..+.+  ....+.+|...|.+++|+|+  .+++++.|
T Consensus       145 ~~~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D  224 (456)
T KOG0266|consen  145 SRVFSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD  224 (456)
T ss_pred             cccceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC
Confidence            3445555566565 789999999  99999999999999999997777  77778899999999999998  89999999


Q ss_pred             CeEEEeecCCC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE
Q 046226          152 GKIRVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE  230 (434)
Q Consensus       152 g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  230 (434)
                      ++|++||+... ..++.+                      .+|...|++++|+|+++++++|+.|++|++||+++++++.
T Consensus       225 ~tiriwd~~~~~~~~~~l----------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~  282 (456)
T KOG0266|consen  225 KTLRIWDLKDDGRNLKTL----------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR  282 (456)
T ss_pred             ceEEEeeccCCCeEEEEe----------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE
Confidence            99999999433 334444                      2799999999999999999999999999999999999999


Q ss_pred             EcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc--CeEEEEEecCCCEEEEEcCCCeE
Q 046226          231 TIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS--PVKTLTLTLDDGLLYGGCTDGYI  307 (434)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i  307 (434)
                      .+.+|.+.|.+++|++++ .|++++.|+.|++||+.....  .  ....+..+..  +++++.|+|++.++++++.|+.+
T Consensus       283 ~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~--~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~  358 (456)
T KOG0266|consen  283 KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK--L--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTL  358 (456)
T ss_pred             eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce--e--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeE
Confidence            999999999999999999 999999999999999882111  1  2333344433  59999999999999999999999


Q ss_pred             EEEEcCcccccccccCcccCcccceEEE---E--eeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc-ccceeEEEEe
Q 046226          308 HYWHKGWFSAQLQYGGALQGHTHAVMCL---A--SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH-RGPIRCAIAF  381 (434)
Q Consensus       308 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~---~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~  381 (434)
                      ++||++.......    ..+|...+.|+   .  ..+.++++|+.|+.|++||+.++   ..+..+.+| ...+..+.++
T Consensus       359 ~~w~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~  431 (456)
T KOG0266|consen  359 KLWDLRSGKSVGT----YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSH  431 (456)
T ss_pred             EEEEccCCcceee----ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccC
Confidence            9999975544433    34555443333   1  24779999999999999999987   788888999 8889999999


Q ss_pred             ecccCCCCCCcccEEEEee--cCCeEEEEecC
Q 046226          382 LGRFGEETEDEYCTICTGS--LDGVLKMWRVT  411 (434)
Q Consensus       382 ~~~~~~~~~~~~~~l~s~~--~Dg~v~iw~~~  411 (434)
                      |.         ..++++++  .|+.|++|..+
T Consensus       432 ~~---------~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  432 PT---------ENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CC---------cCeeeecCcCCCceEEEecCC
Confidence            98         88999998  79999999865

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7e-37  Score=273.53  Aligned_cols=292  Identities=20%  Similarity=0.296  Sum_probs=248.2

Q ss_pred             cceeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEE-EeCC-EEEEEEcCCeE
Q 046226           80 SSYRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAME-VSHD-RVYAAYGDGKI  154 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~-~~~~-~l~~~s~dg~i  154 (434)
                      ...+.++.+.|..+.|..|+|   +.++||+++..+.+|+|+..+..+. .+.+|+..|.++. |+.+ .|++|+.|.++
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv  389 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV  389 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence            344566778899999999999   5699999999999999998876655 7889999999999 5544 89999999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCe-----e
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSK-----C  228 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~-----~  228 (434)
                      ++|.++.+... ...+                 ....+|.+.|.+++++..+ ..|++++.|++|++|++...+     .
T Consensus       390 ilWr~~~~~~~-~~~~-----------------a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~  451 (775)
T KOG0319|consen  390 ILWRLNNNCSK-SLCV-----------------AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPI  451 (775)
T ss_pred             EEEEecCCcch-hhhh-----------------hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccc
Confidence            99988433221 1100                 1123799999999997654 678899999999999997621     1


Q ss_pred             E----EEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC
Q 046226          229 I----ETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT  303 (434)
Q Consensus       229 ~----~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  303 (434)
                      +    .+...|...|+|++++|+. +++||+.|.+.++|++.      .......+.+|...+.++.|++..+.+++++.
T Consensus       452 ~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le------~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg  525 (775)
T KOG0319|consen  452 VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE------QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG  525 (775)
T ss_pred             eehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc------CceEEEEeeCCccceEEEEeccccceeEeccC
Confidence            1    1334699999999999999 99999999999999987      56778899999999999999999999999999


Q ss_pred             CCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226          304 DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       304 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  381 (434)
                      |++|+||.+.+.    ...+++.||...|...+|  ++..|++++.||.|++|+++++   .|++++.+|.+.|++++.+
T Consensus       526 D~TvKIW~is~f----SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~---eC~~tlD~H~DrvWaL~~~  598 (775)
T KOG0319|consen  526 DKTVKIWSISTF----SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN---ECEMTLDAHNDRVWALSVS  598 (775)
T ss_pred             CceEEEEEeccc----eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch---hhhhhhhhccceeEEEeec
Confidence            999999998644    445678899999999888  4789999999999999999998   8999999999999999999


Q ss_pred             ecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          382 LGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       382 ~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      +.         ..+++||+.||.|.+|.=.+
T Consensus       599 ~~---------~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  599 PL---------LDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             Cc---------cceeEecCCCeEEEEeecCc
Confidence            98         78999999999999997444

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3e-36  Score=249.65  Aligned_cols=283  Identities=22%  Similarity=0.322  Sum_probs=237.9

Q ss_pred             eccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC-C----EEEEEEcCCeEEEeecCCCCC
Q 046226           90 KKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH-D----RVYAAYGDGKIRVWRSTWDNG  164 (434)
Q Consensus        90 ~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~----~l~~~s~dg~i~vwd~~~~~~  164 (434)
                      .|.+.|.++...++.+++|++||.+++||. .|+....+.+|.++|.+++|.- +    .+++++.|.++++|.++.+..
T Consensus       103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~  181 (423)
T KOG0313|consen  103 LHDDWVSSVKGASKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN  181 (423)
T ss_pred             cchhhhhhhcccCceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence            388999999888999999999999999995 6788999999999999888753 3    699999999999999876544


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC-------------------
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD-------------------  225 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-------------------  225 (434)
                      ......                  ...+|...|.++...+++..+++|+.|.+|++|+..+                   
T Consensus       182 ~~~~~~------------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~  243 (423)
T KOG0313|consen  182 KVKALK------------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR  243 (423)
T ss_pred             hhhHHh------------------HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence            322210                  1127999999999999999999999999999999321                   


Q ss_pred             ------CeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEE
Q 046226          226 ------SKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLY  299 (434)
Q Consensus       226 ------~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  299 (434)
                            +.++..+.+|.++|.++.|++.+.+++++.|.+|+.||+.      .......+. ....+.++.++|..++|+
T Consensus       244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDle------tg~~~~~~~-~~ksl~~i~~~~~~~Ll~  316 (423)
T KOG0313|consen  244 EKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLE------TGGLKSTLT-TNKSLNCISYSPLSKLLA  316 (423)
T ss_pred             hhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEee------cccceeeee-cCcceeEeecccccceee
Confidence                  2346678899999999999997799999999999999998      222232322 335789999999999999


Q ss_pred             EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC---CEEEEecCCCcEEEEeccCCCceeeEEEeecccccee
Q 046226          300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA---NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIR  376 (434)
Q Consensus       300 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  376 (434)
                      +|+.|..|++||.+...... ....+.+|.+.|.++.|++   .+|++|+.|+++++||+++..  .++..+.+|.+.|.
T Consensus       317 ~gssdr~irl~DPR~~~gs~-v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl  393 (423)
T KOG0313|consen  317 SGSSDRHIRLWDPRTGDGSV-VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVL  393 (423)
T ss_pred             ecCCCCceeecCCCCCCCce-eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEE
Confidence            99999999999998775443 3357789999999999974   489999999999999999862  48899999999999


Q ss_pred             EEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          377 CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      ++.|..          +..|++||.|.+|+|+.-.
T Consensus       394 ~vdW~~----------~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  394 SVDWNE----------GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEeccC----------CceEEeccCcceEEEeccc
Confidence            999986          5689999999999998754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.1e-38  Score=260.88  Aligned_cols=271  Identities=19%  Similarity=0.348  Sum_probs=234.6

Q ss_pred             cCCCCCCCCCCCCCccCCCCCCCcccceeeeEE-----EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEee
Q 046226           55 TSPLSSPRHPFNPTAAAGSSSPETSSSYRCISS-----VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGR  127 (434)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~  127 (434)
                      ..+++.....+.++++.++++.+.+..|+....     ++.|+.+|.++.|  ++.++++|+.+|.|++|+.. ...+..
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKI  174 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHH
Confidence            456677778899999999999888888877433     5679999999999  99999999999999999864 444555


Q ss_pred             ccCCC-ccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec
Q 046226          128 LKAKT-SMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV  204 (434)
Q Consensus       128 ~~~~~-~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  204 (434)
                      ++.|. ..|.+++|+|+  .+++++.||+|+|||....+....+                      .+|.-.|.+++|+|
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL----------------------~GHgwdVksvdWHP  232 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL----------------------RGHGWDVKSVDWHP  232 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee----------------------ccCCCCcceeccCC
Confidence            55554 89999999996  8999999999999998766554444                      27999999999999


Q ss_pred             CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226          205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY  283 (434)
Q Consensus       205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  283 (434)
                      ...++++|+.|..|++||.+++.++.++.+|+..|..+.|++++ +|++++.|..++++|++      ..+.+..+++|.
T Consensus       233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR------~mkEl~~~r~Hk  306 (464)
T KOG0284|consen  233 TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR------TMKELFTYRGHK  306 (464)
T ss_pred             ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh------HhHHHHHhhcch
Confidence            99999999999999999999999999999999999999999999 99999999999999998      444566788999


Q ss_pred             cCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEecc
Q 046226          284 SPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       284 ~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~  357 (434)
                      ..+.++.|+| ...+|.+|+.||.|..|.+......   ...-.+|...|++++++  |.+|++|+.|.++++|.-.
T Consensus       307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             hhheeeccccccccceeeccCCCceEEEeccccccc---cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            9999999999 6678999999999999998633332   23445899999999998  7799999999999999754

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=9.5e-35  Score=250.39  Aligned_cols=349  Identities=15%  Similarity=0.177  Sum_probs=272.6

Q ss_pred             CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeE-------EEeeccccEEEEEE--cCCEE
Q 046226           35 PSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCIS-------SVLKKDGQILCIAV--GNGFI  105 (434)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~--~~~~l  105 (434)
                      .+..-.+...++....+.+|..+...++++|.+..++++...++++.|.+..       ++..-.++|..++|  +++.+
T Consensus        39 ksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI  118 (603)
T KOG0318|consen   39 KSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRI  118 (603)
T ss_pred             CEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEE
Confidence            3444445566777889999999999999999999999999999999888754       35556899999999  77777


Q ss_pred             EEEeC--CCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCce
Q 046226          106 YTGSD--SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAV  180 (434)
Q Consensus       106 ~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      ++.++  ++..+++-.+++..+.++.+|...|++++|-|.   ++++|+.|++|.+|+-.-    ..++           
T Consensus       119 ~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----FKFk-----------  183 (603)
T KOG0318|consen  119 AAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----FKFK-----------  183 (603)
T ss_pred             EEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----eeee-----------
Confidence            66654  333334334478889999999999999999886   899999999999996321    1111           


Q ss_pred             eEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc---cCccCeEEEEEcCCC-eEEEEeCC
Q 046226          181 RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ---AHSEPINALVVADDG-VLYSASDD  256 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~s~~~d  256 (434)
                             ..+..|..-|.|+.|+|||.+|++++.||.|.+||-.+++.+..+.   +|.+.|.++.|+||+ .+++++.|
T Consensus       184 -------~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD  256 (603)
T KOG0318|consen  184 -------SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD  256 (603)
T ss_pred             -------ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence                   0123699999999999999999999999999999999999999998   899999999999999 99999999


Q ss_pred             CeEEEEecccccCcc-------------------------------------eeEEEEEecccccCeEEEEEecCCCEEE
Q 046226          257 ATVRVWRRYFYSENQ-------------------------------------LHTLILTLTAKYSPVKTLTLTLDDGLLY  299 (434)
Q Consensus       257 g~i~iwd~~~~~~~~-------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~  299 (434)
                      .+++|||+.......                                     .......+.+|...|+++..++++.+|+
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY  336 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence            999999985211000                                     0012235678999999999999999999


Q ss_pred             EEcCCCeEEEEEcCcccccccc------------------------------c--------C----c-------------
Q 046226          300 GGCTDGYIHYWHKGWFSAQLQY------------------------------G--------G----A-------------  324 (434)
Q Consensus       300 ~~~~dg~i~i~d~~~~~~~~~~------------------------------~--------~----~-------------  324 (434)
                      +|+.||.|.-||..........                              .        .    .             
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            9999999999996543211000                              0        0    0             


Q ss_pred             --------------ccCc----------ccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEE
Q 046226          325 --------------LQGH----------THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIA  380 (434)
Q Consensus       325 --------------~~~~----------~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  380 (434)
                                    ++.+          .....++..+++.++.|+.||.|+||.+..+.. .....+..|.++|+++++
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vay  495 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAY  495 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEE
Confidence                          0000          001122223467999999999999999987643 445567789999999999


Q ss_pred             eecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          381 FLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       381 ~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      +|+         +.+||+|...+.|.+||+.+.+.
T Consensus       496 Spd---------~~yla~~Da~rkvv~yd~~s~~~  521 (603)
T KOG0318|consen  496 SPD---------GAYLAAGDASRKVVLYDVASREV  521 (603)
T ss_pred             CCC---------CcEEEEeccCCcEEEEEcccCce
Confidence            999         99999999999999999998765

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.6e-35  Score=261.08  Aligned_cols=325  Identities=20%  Similarity=0.266  Sum_probs=264.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeee--------------------------------------EEE-
Q 046226           48 SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCI--------------------------------------SSV-   88 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~-   88 (434)
                      ...+.+|+..+-...+..+...+.+-+.++.+-.|.|-                                      ..+ 
T Consensus       182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l  261 (893)
T KOG0291|consen  182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL  261 (893)
T ss_pred             eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence            45677888888877777676667776666665555553                                      111 


Q ss_pred             eeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEe--CCEEEEEEc-CCeEEEeecCCCC
Q 046226           89 LKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVS--HDRVYAAYG-DGKIRVWRSTWDN  163 (434)
Q Consensus        89 ~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~~~s~-dg~i~vwd~~~~~  163 (434)
                      ......|+|.+|  .-++|++|-..|...+|++.+..+++.+.-...+|..++|+  .|.++.|+. -|.+-||+.....
T Consensus       262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs  341 (893)
T KOG0291|consen  262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES  341 (893)
T ss_pred             cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence            122367999999  67899999999999999999999999998888899999999  578888877 4899999987654


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV  243 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  243 (434)
                      -+-..                      ++|...+++++++|||+++++|++||.|+|||..++-|+.+|..|...|+.+.
T Consensus       342 YVlKQ----------------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~  399 (893)
T KOG0291|consen  342 YVLKQ----------------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQ  399 (893)
T ss_pred             eeeec----------------------cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEE
Confidence            44333                      37999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc-cccCeEEEEEecCCCEEEEEcCCC-eEEEEEcCccccccc
Q 046226          244 VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGCTDG-YIHYWHKGWFSAQLQ  320 (434)
Q Consensus       244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~  320 (434)
                      |+..+ .+++.+.||+|+.||+.      ......++.. ......+++..|.|..+.+|+.|. .|++|++.++    +
T Consensus       400 f~~~g~~llssSLDGtVRAwDlk------RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG----q  469 (893)
T KOG0291|consen  400 FTARGNVLLSSSLDGTVRAWDLK------RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG----Q  469 (893)
T ss_pred             EEecCCEEEEeecCCeEEeeeec------ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC----e
Confidence            99999 99999999999999997      2222223222 234567899999999999999887 7999998543    4


Q ss_pred             ccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEE
Q 046226          321 YGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICT  398 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  398 (434)
                      +...+.||.++|.+++|+  ++.|++++.|.+||+||+-...  ..+.++ .+...+..++|.|+         |+.|++
T Consensus       470 llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfrPd---------G~elaV  537 (893)
T KOG0291|consen  470 LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFRPD---------GKELAV  537 (893)
T ss_pred             eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEcCC---------CCeEEE
Confidence            456788999999987664  7899999999999999987642  223333 45677899999999         999999


Q ss_pred             eecCCeEEEEecCCCCcc
Q 046226          399 GSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       399 ~~~Dg~v~iw~~~~~~~~  416 (434)
                      +..||.|.+||...+...
T Consensus       538 aTldgqItf~d~~~~~q~  555 (893)
T KOG0291|consen  538 ATLDGQITFFDIKEAVQV  555 (893)
T ss_pred             EEecceEEEEEhhhceee
Confidence            999999999999877543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.1e-35  Score=237.53  Aligned_cols=279  Identities=18%  Similarity=0.285  Sum_probs=240.8

Q ss_pred             CCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee------eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226           47 FSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK  118 (434)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd  118 (434)
                      +.-.+.+|...++...|.|++..+++++.|..+-.|+.      ...+++|+++|..+.|  +++.|++++.|.+|+.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            34567899999999999999999999999999988885      4568899999999999  999999999999999999


Q ss_pred             CCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC
Q 046226          119 QPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG  195 (434)
Q Consensus       119 ~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (434)
                      .++++.+..++.|...|+++....-   .+.+++.|+++++||++....++.+                       ...-
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-----------------------~~ky  175 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-----------------------ENKY  175 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-----------------------ccce
Confidence            9999999999999999999984432   6778888999999999988777666                       3566


Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~  274 (434)
                      .++++.|..++..+.+|+-|+.|++||++.......+.+|.+.|+.+..+++| .+.+-+.|.++++||++.....  ..
T Consensus       176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~--~R  253 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS--QR  253 (338)
T ss_pred             eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC--Cc
Confidence            79999999999999999999999999999999999999999999999999999 9999999999999999833322  22


Q ss_pred             EEEEecccc----cCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCC
Q 046226          275 LILTLTAKY----SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSAD  348 (434)
Q Consensus       275 ~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~d  348 (434)
                      .+..+.++.    ......+|+|++..+-+|+.|..+++||..    ...+...++||.+.|.+++|.+  .+|.+++.|
T Consensus       254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~----~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd  329 (338)
T KOG0265|consen  254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT----SRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD  329 (338)
T ss_pred             eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc----cccEEEEcCCcceeEEEeeecCCCcEEEEeccC
Confidence            233333332    345678999999999999999999999964    3344457889999999999985  489999999


Q ss_pred             CcEEEE
Q 046226          349 STSRVW  354 (434)
Q Consensus       349 g~i~iw  354 (434)
                      .+|++=
T Consensus       330 k~i~lg  335 (338)
T KOG0265|consen  330 KTIYLG  335 (338)
T ss_pred             ceeEee
Confidence            999874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.9e-34  Score=286.70  Aligned_cols=284  Identities=18%  Similarity=0.196  Sum_probs=225.0

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc----e----eEeeccCCCccEEEEEEeCC---EEEEEEcCCeE
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF----T----ECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKI  154 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~----~----~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i  154 (434)
                      +..|.+.|.+++|  ++++||+|+.|+.|+|||....    .    ....+. +...|.+++|++.   .+++++.||.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4569999999999  8999999999999999997542    1    122233 3467899999863   89999999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  233 (434)
                      ++||+.+++.+..+                      .+|...|++++|+| ++.+|++|+.||.|++||++++..+..+.
T Consensus       558 ~lWd~~~~~~~~~~----------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        558 QVWDVARSQLVTEM----------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK  615 (793)
T ss_pred             EEEECCCCeEEEEe----------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            99999866544433                      26999999999997 78899999999999999999999888887


Q ss_pred             cCccCeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE
Q 046226          234 AHSEPINALVVAD-DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH  311 (434)
Q Consensus       234 ~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  311 (434)
                      .+ ..+.++.|.+ ++ .|++|+.||.|++||++..     ......+.+|...|.++.|. ++.+|++++.|+.|++||
T Consensus       616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence            54 6789999964 56 9999999999999998721     12334566888999999997 678999999999999999


Q ss_pred             cCcccc--cccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCcee--------eE--EEeeccccceeE
Q 046226          312 KGWFSA--QLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHT--------ML--AVLVGHRGPIRC  377 (434)
Q Consensus       312 ~~~~~~--~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--------~~--~~~~~h~~~v~~  377 (434)
                      ++....  .......+.+|...+.++.++  +.+|++|+.|+.|++|+........        .+  .....|...|.+
T Consensus       689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~  768 (793)
T PLN00181        689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS  768 (793)
T ss_pred             CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence            874321  122334667888888777765  6799999999999999976542110        00  112345667999


Q ss_pred             EEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                      ++|+|+         +.+|++|+.||.|+||++
T Consensus       769 v~ws~~---------~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        769 VCWRGQ---------SSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEcCC---------CCeEEEecCCCcEEEEec
Confidence            999998         899999999999999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-35  Score=245.15  Aligned_cols=281  Identities=21%  Similarity=0.313  Sum_probs=238.1

Q ss_pred             CEEEEEeCCCeEEEec--CCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226          103 GFIYTGSDSNVIRIWK--QPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG  178 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd--~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (434)
                      .-++.|.-.+..+..+  +....+...+.+|...|+.+-|+|+  .+++++.|++|++||..+++....++         
T Consensus        77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr---------  147 (406)
T KOG0295|consen   77 DELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR---------  147 (406)
T ss_pred             cccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh---------
Confidence            3455554444444332  1233455667789999999999998  66777789999999999887755553         


Q ss_pred             ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC-CeeEEEcccCccCeEEEEEcCCC-eEEEEeCC
Q 046226          179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD-SKCIETIQAHSEPINALVVADDG-VLYSASDD  256 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d  256 (434)
                                   +|.+.+.+|+|+..|+++++++.|-.+++||.++ .++++.+.+|...|.+++|-|.| ++++++.|
T Consensus       148 -------------GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD  214 (406)
T KOG0295|consen  148 -------------GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD  214 (406)
T ss_pred             -------------ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence                         7999999999999999999999999999999987 57888888999999999999999 99999999


Q ss_pred             CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEE
Q 046226          257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA  336 (434)
Q Consensus       257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  336 (434)
                      .+|+.|++.      ....+..+.+|...|..++.+.||.++++++.|.+|++|-+.+....    ..+..|+.+|-|++
T Consensus       215 ~tik~We~~------tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k----~~lR~hEh~vEci~  284 (406)
T KOG0295|consen  215 NTIKAWECD------TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK----AELREHEHPVECIA  284 (406)
T ss_pred             cceeEEecc------cceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh----hhhhccccceEEEE
Confidence            999999987      66778889999999999999999999999999999999997644333    35568888888887


Q ss_pred             ee------------C-----CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226          337 SV------------A-----NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       337 ~~------------~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                      |-            |     .++.+++.|++|++||+.++   .++.++.+|...|..++|+|.         |+||+|+
T Consensus       285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~ghdnwVr~~af~p~---------Gkyi~Sc  352 (406)
T KOG0295|consen  285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVGHDNWVRGVAFSPG---------GKYILSC  352 (406)
T ss_pred             ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEecccceeeeeEEcCC---------CeEEEEE
Confidence            62            2     38999999999999999999   999999999999999999999         9999999


Q ss_pred             ecCCeEEEEecCCCCccccccccccCceeEee
Q 046226          400 SLDGVLKMWRVTRPKSSCGHLNKTNGHEYFEL  431 (434)
Q Consensus       400 ~~Dg~v~iw~~~~~~~~~~~~~~~~g~~~~~~  431 (434)
                      .+|+++++||+++.+..    ..++.|+.|+.
T Consensus       353 aDDktlrvwdl~~~~cm----k~~~ah~hfvt  380 (406)
T KOG0295|consen  353 ADDKTLRVWDLKNLQCM----KTLEAHEHFVT  380 (406)
T ss_pred             ecCCcEEEEEeccceee----eccCCCcceeE
Confidence            99999999999988753    34456777664

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.8e-34  Score=265.95  Aligned_cols=280  Identities=26%  Similarity=0.419  Sum_probs=251.8

Q ss_pred             ccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEee-ccCCCccEEEEEEe--CCEEEEEEcCCeEEEeecCCCCCcee
Q 046226           91 KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGR-LKAKTSMVVAMEVS--HDRVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        91 h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      |...++|..+.++++++++.|++|++||..++..+.. +.+|.+.|.++++.  .+.+++|+.|.++++||..++.+...
T Consensus       207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~  286 (537)
T KOG0274|consen  207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS  286 (537)
T ss_pred             CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence            5677888888999999999999999999999999888 99999999999999  67999999999999999988887777


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD  247 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  247 (434)
                      +.                      +|.+.|.++...  ..++++|+.|.+|++|++.++.++..+.+|.++|+++..+ .
T Consensus       287 l~----------------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~  341 (537)
T KOG0274|consen  287 LQ----------------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-E  341 (537)
T ss_pred             ec----------------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-C
Confidence            64                      699999999875  5678889999999999999999999999999999999998 5


Q ss_pred             CeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC
Q 046226          248 GVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG  327 (434)
Q Consensus       248 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  327 (434)
                      .++++|+.|+.|++||+.      ..+.+..+.+|...|.++.+... ..+++|+.|+.|++||++...   +....+.+
T Consensus       342 ~~lvsgs~d~~v~VW~~~------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~  411 (537)
T KOG0274|consen  342 PLLVSGSYDGTVKVWDPR------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR---KCIHTLQG  411 (537)
T ss_pred             CEEEEEecCceEEEEEhh------hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh---hhhhhhcC
Confidence            599999999999999987      77788899999999999988665 899999999999999997553   55667889


Q ss_pred             cccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeec-cccceeEEEEeecccCCCCCCcccEEEEeecCCeEE
Q 046226          328 HTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG-HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK  406 (434)
Q Consensus       328 ~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~  406 (434)
                      |...+..+.+.+++|++++.|+.|++||.+++   .++..+.+ |.+.|..+++.           ...+++++.||.++
T Consensus       412 h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~-----------~~~il~s~~~~~~~  477 (537)
T KOG0274|consen  412 HTSLVSSLLLRDNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG-----------KEEILCSSDDGSVK  477 (537)
T ss_pred             CcccccccccccceeEeccccccEEEeecccC---ceeeeeccCCcccEEEeecC-----------cceEEEEecCCeeE
Confidence            99999999999999999999999999999998   78888888 77889888886           24699999999999


Q ss_pred             EEecCCCCccccc
Q 046226          407 MWRVTRPKSSCGH  419 (434)
Q Consensus       407 iw~~~~~~~~~~~  419 (434)
                      +||+++++.....
T Consensus       478 l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  478 LWDLRSGTLIRTL  490 (537)
T ss_pred             EEecccCchhhhh
Confidence            9999999876544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.7e-35  Score=265.63  Aligned_cols=291  Identities=19%  Similarity=0.268  Sum_probs=252.1

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCC
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDN  163 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~  163 (434)
                      |...+.+|..++|  ...+++++-..|.|++||..=+.++.++..|.++|..++|+|.  .+++|+.|-.|+||+..+..
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            4446778999999  7889999999999999999999999999999999999999997  89999999999999998777


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV  243 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  243 (434)
                      ++..+                      .+|-+.|+.+.|++.-.++++++.|.+|+||+..+.+++..+.+|...|.|..
T Consensus        85 clftL----------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   85 CLFTL----------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             ehhhh----------------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence            66655                      38999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEecccccCc-----------------------ceeEEEEEecccccCeEEEEEecCCCEEE
Q 046226          244 VADDG-VLYSASDDATVRVWRRYFYSEN-----------------------QLHTLILTLTAKYSPVKTLTLTLDDGLLY  299 (434)
Q Consensus       244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  299 (434)
                      |+|.. .+++++-|.+||+||+......                       ........+.+|...|+-++|+|.-.+++
T Consensus       143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliV  222 (1202)
T KOG0292|consen  143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIV  222 (1202)
T ss_pred             cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEE
Confidence            99966 9999999999999998522111                       01123456789999999999999999999


Q ss_pred             EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE
Q 046226          300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC  377 (434)
Q Consensus       300 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  377 (434)
                      +|+.|..|++|.+..  .+.-...+..+|.+.|.++-|++  +++++.++|+.|+|||+...   +.+.+++-..+.-+.
T Consensus       223 SG~DDRqVKlWrmne--tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~  297 (1202)
T KOG0292|consen  223 SGADDRQVKLWRMNE--TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWI  297 (1202)
T ss_pred             ecCCcceeeEEEecc--ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEE
Confidence            999999999998863  23333457789999999999987  69999999999999999987   788888888889999


Q ss_pred             EEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ++.+|.         .++++.| .|+-+.+|.++..++
T Consensus       298 laahP~---------lNLfAAg-HDsGm~VFkleRErp  325 (1202)
T KOG0292|consen  298 LAAHPE---------LNLFAAG-HDSGMIVFKLERERP  325 (1202)
T ss_pred             EEecCC---------cceeeee-cCCceEEEEEcccCc
Confidence            999998         6655554 577788888886554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.8e-35  Score=263.30  Aligned_cols=202  Identities=16%  Similarity=0.377  Sum_probs=188.1

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST  160 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~  160 (434)
                      ..++.||.++|..+.|  +.++|++++.|++||+|.+.+...+..+++|..+|+++.|+|.  ++++|+.|++.++|...
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            3558999999999999  8999999999999999999999999999999999999999997  89999999999999987


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN  240 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  240 (434)
                      .....+.+                      .+|.+.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.+|.++|.
T Consensus       524 ~~~PlRif----------------------aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~  581 (707)
T KOG0263|consen  524 HNKPLRIF----------------------AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT  581 (707)
T ss_pred             cCCchhhh----------------------cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceE
Confidence            65544444                      37999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      +++|+|+| +|++|+.||.|.+||+.      ....+..+.+|.+.|.++.|+.+|..|++|+.|.+|++||+..
T Consensus       582 al~~Sp~Gr~LaSg~ed~~I~iWDl~------~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  582 ALAFSPCGRYLASGDEDGLIKIWDLA------NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEEEcCCCceEeecccCCcEEEEEcC------CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            99999999 99999999999999997      5566777888999999999999999999999999999999853

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-34  Score=254.98  Aligned_cols=277  Identities=22%  Similarity=0.284  Sum_probs=242.1

Q ss_pred             EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCC
Q 046226           86 SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTW  161 (434)
Q Consensus        86 ~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~  161 (434)
                      +++..|+..|.|+.+  ...+++++-.+|.|.|||.++...+..+....-+|.+..|-+.  .+++|+.|..|+||+..+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            345568999999999  7889999999999999999999999999999999999999774  999999999999999999


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeE
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPIN  240 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~  240 (434)
                      .+.+..+.                      .|.+.|++++.+|...++++++.|-+|++||.+.. .+.+++.+|...|.
T Consensus        87 ~ekV~~Fe----------------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM  144 (794)
T KOG0276|consen   87 GEKVKTFE----------------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM  144 (794)
T ss_pred             ceeeEEee----------------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence            88888775                      69999999999999999999999999999999754 78899999999999


Q ss_pred             EEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC--CCEEEEEcCCCeEEEEEcCccc
Q 046226          241 ALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD--DGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       241 ~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                      +++|+|..  .+++++-|++|++|.+.      ......++.+|...|+++++-+.  ..+|++|+.|..|+|||..+  
T Consensus       145 qv~fnPkD~ntFaS~sLDrTVKVWslg------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--  216 (794)
T KOG0276|consen  145 QVAFNPKDPNTFASASLDRTVKVWSLG------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--  216 (794)
T ss_pred             EEEecCCCccceeeeeccccEEEEEcC------CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch--
Confidence            99999977  99999999999999886      44556778899999999999884  46999999999999999753  


Q ss_pred             ccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          317 AQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       317 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                        ..+..++.||...|.++.|.+.  .+++|++||++|||+..+-   +....+.-.-++|+|++..+.         +.
T Consensus       217 --k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~---------~~  282 (794)
T KOG0276|consen  217 --KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKG---------DG  282 (794)
T ss_pred             --HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCC---------CC
Confidence              4455678899999999999887  8999999999999998775   445555556678999998877         56


Q ss_pred             EEEEeecCCeEE
Q 046226          395 TICTGSLDGVLK  406 (434)
Q Consensus       395 ~l~s~~~Dg~v~  406 (434)
                      .++.|.+.|.|.
T Consensus       283 ~i~vG~Deg~i~  294 (794)
T KOG0276|consen  283 KIAVGFDEGSVT  294 (794)
T ss_pred             eEEEeccCCcEE
Confidence            677777666553

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-34  Score=228.95  Aligned_cols=284  Identities=13%  Similarity=0.210  Sum_probs=234.3

Q ss_pred             EEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCC
Q 046226           87 SVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWD  162 (434)
Q Consensus        87 ~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~  162 (434)
                      .++||..+++.+.+  +|++|++++.|.+..||--.+|+.+.++.+|.+.|+|+..+-+  .+++|++|.++++||+.++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            36789999999999  8999999999999999998899999999999999999998775  9999999999999999999


Q ss_pred             CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-----CCcEEEEEcC-------CCeeEE
Q 046226          163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-----DKTIKVWRIR-------DSKCIE  230 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~  230 (434)
                      +.+..++                       ...+|..+.|+++|++++....     .+.|.++|++       ..+++.
T Consensus        85 k~la~~k-----------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~  141 (327)
T KOG0643|consen   85 KQLATWK-----------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL  141 (327)
T ss_pred             cEEEEee-----------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence            8888774                       6778999999999999887754     3679999998       445677


Q ss_pred             EcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEE
Q 046226          231 TIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY  309 (434)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  309 (434)
                      .+..+...++.+-|.|-+ .|++|..||.|.+||++     .....+.....|...|+.+.++++..++++++.|.+-++
T Consensus       142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~-----~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl  216 (327)
T KOG0643|consen  142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDAR-----TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL  216 (327)
T ss_pred             EecCCccceeeeeecccCCEEEEecCCCcEEEEEcc-----cCceeeechhhhccccccccccCCcceEEecccCcccee
Confidence            888888999999999999 99999999999999988     234566667788899999999999999999999999999


Q ss_pred             EEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEe--ccCCC---------ceeeEEEeecccccee
Q 046226          310 WHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWA--REQDG---------RHTMLAVLVGHRGPIR  376 (434)
Q Consensus       310 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd--~~~~~---------~~~~~~~~~~h~~~v~  376 (434)
                      ||+++......+     ....+|.+.++.+  ++++.|+.....-|=-  .+.++         ..+.+..+++|-++|+
T Consensus       217 ~D~~tl~v~Kty-----~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN  291 (327)
T KOG0643|consen  217 VDVRTLEVLKTY-----TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN  291 (327)
T ss_pred             eeccceeeEEEe-----eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc
Confidence            998755444333     2334677777664  4555554332222221  11110         0145678899999999


Q ss_pred             EEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          377 CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      +++|+|+         |...+||++||.|++.-++.
T Consensus       292 svAfhPd---------GksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  292 SVAFHPD---------GKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             eeEECCC---------CcccccCCCCceEEEEEecc
Confidence            9999999         99999999999999987664

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1e-33  Score=233.56  Aligned_cols=295  Identities=16%  Similarity=0.223  Sum_probs=239.6

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEe
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVW  157 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vw  157 (434)
                      -..+.+|..|++.|.+++.  +.++++||+.|..-.+|++.++.....+.+|+..|+++.|+.+  +|++|..+|.|+||
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            3457788999999999999  7899999999999999999999999999999999999999987  89999999999999


Q ss_pred             ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc
Q 046226          158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE  237 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  237 (434)
                      +..++.....+.                      .....+.-+.|+|-+..|+.|+.||.+.+|.+.++...+.+.+|..
T Consensus       134 ~~stg~~~~~~~----------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~  191 (399)
T KOG0296|consen  134 KVSTGGEQWKLD----------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS  191 (399)
T ss_pred             EcccCceEEEee----------------------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence            998876655552                      2556788899999999999999999999999999888899999999


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec-ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcc
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT-AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWF  315 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  315 (434)
                      ++++=.|.|+| +++++..||+|++||+..      ..+...+. .......++.++..+..++.|..++.+++-+....
T Consensus       192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt------g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg  265 (399)
T KOG0296|consen  192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKT------GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG  265 (399)
T ss_pred             CcccccccCCCceEEEEecCceEEEEecCC------CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence            99999999999 999999999999999872      22222222 22346677888888888889988888888775443


Q ss_pred             ccccccc----CcccCcccceEEEE---eeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccC
Q 046226          316 SAQLQYG----GALQGHTHAVMCLA---SVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFG  386 (434)
Q Consensus       316 ~~~~~~~----~~~~~~~~~v~~~~---~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  386 (434)
                      +......    .....+...+-|+.   ++..  +.|+|+-||+|.|||+...    .++..-.|...|+.+.|.++   
T Consensus       266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~t---  338 (399)
T KOG0296|consen  266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLNT---  338 (399)
T ss_pred             eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcCc---
Confidence            3222111    11123333444443   3333  7899999999999999874    45556679999999999874   


Q ss_pred             CCCCCcccEEEEeecCCeEEEEecCCCCcccc
Q 046226          387 EETEDEYCTICTGSLDGVLKMWRVTRPKSSCG  418 (434)
Q Consensus       387 ~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~  418 (434)
                             .+|++++.||.|+.||.++|+....
T Consensus       339 -------~~l~t~c~~g~v~~wDaRtG~l~~~  363 (399)
T KOG0296|consen  339 -------DYLLTACANGKVRQWDARTGQLKFT  363 (399)
T ss_pred             -------chheeeccCceEEeeeccccceEEE
Confidence                   5899999999999999999986543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.7e-33  Score=220.01  Aligned_cols=250  Identities=20%  Similarity=0.295  Sum_probs=213.7

Q ss_pred             eeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      ..+..+++|.+.+..++|+|.   .|++++.|..|++|+...+..........                  .+|...|++
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld------------------~~hkrsVRs   66 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD------------------DGHKRSVRS   66 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc------------------ccchheeee
Confidence            456778899999999999998   69999999999999987533222211110                  159999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCC--CeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226          200 IAINVSDDTLYSASLDKTIKVWRIRD--SKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI  276 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~  276 (434)
                      ++|+|.|++|++|+.|.++.||.-..  .+++..+.+|...|.|++|+++| +|++++.|+.|-||.+.   +.......
T Consensus        67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d---eddEfec~  143 (312)
T KOG0645|consen   67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID---EDDEFECI  143 (312)
T ss_pred             eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec---CCCcEEEE
Confidence            99999999999999999999998764  47899999999999999999999 99999999999999887   55667788


Q ss_pred             EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEE
Q 046226          277 LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVW  354 (434)
Q Consensus       277 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iw  354 (434)
                      ..+..|...|..+.|+|...+|++++.|.+|++|+-.. ........++.+|...|.+++|+  |..|+++++|++++||
T Consensus       144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw  222 (312)
T KOG0645|consen  144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW  222 (312)
T ss_pred             eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence            89999999999999999999999999999999998654 45667778899999999999997  6799999999999999


Q ss_pred             eccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          355 AREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       355 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      .....       .-..|...+..+.|. +          ..|+|++.|+.|+++.-..
T Consensus       223 ~~~~~-------~~~~~sr~~Y~v~W~-~----------~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  223 RLYTD-------LSGMHSRALYDVPWD-N----------GVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             eeccC-------cchhcccceEeeeec-c----------cceEeccCCCEEEEEEecC
Confidence            86543       112478889999998 3          3799999999999998774

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=7.7e-35  Score=228.36  Aligned_cols=282  Identities=19%  Similarity=0.320  Sum_probs=235.4

Q ss_pred             EEeeccccEEEEEE-----cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeec
Q 046226           87 SVLKKDGQILCIAV-----GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRS  159 (434)
Q Consensus        87 ~~~~h~~~v~~~~~-----~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~  159 (434)
                      +..+|+.+|..++|     +|-+|++++.|+.=.+-+-+++.-+.++.+|.+.|+....+.+  +-++++.|-+-++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            45789999999999     7889999999999999999999999999999999999999888  6778888999999999


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-eEEEcccCccC
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-CIETIQAHSEP  238 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~  238 (434)
                      -++..+..+                       .|..-|.+++|+.|.++|++|+.+..++|+|++..+ +...+.+|.+.
T Consensus        89 ~tgdelhsf-----------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~  145 (334)
T KOG0278|consen   89 VTGDELHSF-----------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG  145 (334)
T ss_pred             hhhhhhhhh-----------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence            888777776                       599999999999999999999999999999998654 56778899999


Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      |..+.|.... .+++...|+.||+||.+      .......+. ...+|+++.++++|++|.++ ..+.|.+||......
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~r------Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~  217 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHR------TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL  217 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEec------cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccc
Confidence            9999998666 88888999999999998      222333332 34689999999999877665 467899999765443


Q ss_pred             cccccCcccCcccceEE--EEeeCCEEEEecCCCcEEEEeccCCCceeeEEE-eeccccceeEEEEeecccCCCCCCccc
Q 046226          318 QLQYGGALQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAV-LVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       318 ~~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                      ...+    . -...|.+  +.+....+++|++|..++.||..++   ..+.. .++|.++|.|+.|+|+         |.
T Consensus       218 lKs~----k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPd---------GE  280 (334)
T KOG0278|consen  218 LKSY----K-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPD---------GE  280 (334)
T ss_pred             eeec----c-CccccccccccCCCceEEecCcceEEEEEeccCC---ceeeecccCCCCceEEEEECCC---------Cc
Confidence            3222    1 1123444  4445569999999999999999998   44555 4899999999999999         99


Q ss_pred             EEEEeecCCeEEEEecCCCCcc
Q 046226          395 TICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      .-++||+||+|++|.+..++..
T Consensus       281 ~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             eeeccCCCceEEEEEecCCCch
Confidence            9999999999999999877654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.9e-34  Score=237.23  Aligned_cols=249  Identities=19%  Similarity=0.302  Sum_probs=221.1

Q ss_pred             ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          122 FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      .+....+++|.+.|.|+++.|.  .+++|+.|++|+|||+.+++....+.                      +|...|..
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt----------------------Ghi~~vr~  198 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT----------------------GHIETVRG  198 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec----------------------chhheeee
Confidence            4555678899999999999995  89999999999999999886655552                      79999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226          200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  278 (434)
                      +++++-..|+++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|..+|+||++      ....+..
T Consensus       199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR------tr~~V~~  272 (460)
T KOG0285|consen  199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR------TRASVHV  272 (460)
T ss_pred             eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec------ccceEEE
Confidence            9999999999999999999999999999999999999999999999987 99999999999999999      6677889


Q ss_pred             ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEec
Q 046226          279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAR  356 (434)
Q Consensus       279 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~  356 (434)
                      +.+|..+|.++.+.|-+..+++|+.|++|++||++..+..    ..+..|...|.++..+++  .+++++.| .|+-|++
T Consensus       273 l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~----~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~  347 (460)
T KOG0285|consen  273 LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM----ITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKL  347 (460)
T ss_pred             ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee----EeeecccceeeEEecCCchhhhhccCCc-cceeccC
Confidence            9999999999999998899999999999999998755443    345578889999988754  67777766 6999999


Q ss_pred             cCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          357 EQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       357 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      ..+   ..+..+.+|..-|.+++...|          .++++|++.|.+.+||.+++-+.
T Consensus       348 p~g---~f~~nlsgh~~iintl~~nsD----------~v~~~G~dng~~~fwdwksg~ny  394 (460)
T KOG0285|consen  348 PEG---EFLQNLSGHNAIINTLSVNSD----------GVLVSGGDNGSIMFWDWKSGHNY  394 (460)
T ss_pred             Ccc---chhhccccccceeeeeeeccC----------ceEEEcCCceEEEEEecCcCccc
Confidence            988   677779999999999999876          48999999999999999988654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-33  Score=251.57  Aligned_cols=350  Identities=17%  Similarity=0.257  Sum_probs=281.3

Q ss_pred             CCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeee-----EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226           46 RFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCI-----SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK  118 (434)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd  118 (434)
                      ...-.+.+|+..++...+...+.++++++.|..+-.|..+     ..+.||.+.|+..-|  +.++|++.+.|+.|++||
T Consensus        98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd  177 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD  177 (888)
T ss_pred             ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence            4445678899999999999999999999999999999886     458999999999999  588999999999999999


Q ss_pred             CCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCc---------------------eeeEeee-----
Q 046226          119 QPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGV---------------------KHVKLAT-----  172 (434)
Q Consensus       119 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~---------------------~~~~~~~-----  172 (434)
                      +++..+..+.-.|.+.|+.+++.++.+++++.|+.+++|++......                     +...+..     
T Consensus       178 L~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r  257 (888)
T KOG0306|consen  178 LETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR  257 (888)
T ss_pred             cccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence            99999999999999999999999999999999999999998221100                     0000000     


Q ss_pred             -----------------------------------------------------------------------ccCCCCc--
Q 046226          173 -----------------------------------------------------------------------IPKTGGA--  179 (434)
Q Consensus       173 -----------------------------------------------------------------------~~~~~~~--  179 (434)
                                                                                             .+..+..  
T Consensus       258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~  337 (888)
T KOG0306|consen  258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT  337 (888)
T ss_pred             EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence                                                                                   0000000  


Q ss_pred             --------e--eEEEe-----------ccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226          180 --------V--RNLIV-----------GKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP  238 (434)
Q Consensus       180 --------~--~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  238 (434)
                              +  ..+..           ..-...+|...|.+++++.+...+++|+ .+.|++|+..+.++++++...  .
T Consensus       338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y  414 (888)
T KOG0306|consen  338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--Y  414 (888)
T ss_pred             EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--c
Confidence                    0  00000           0013567999999999998888888877 678999999999999999743  8


Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      +.+..|.|.+ +++.|...|.+.+||+.      ..........|.+.+.+++.+||+..+++|+.|.+|++||+.....
T Consensus       415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdla------S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~  488 (888)
T KOG0306|consen  415 ILASKFVPGDRYIVLGTKNGELQVFDLA------SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS  488 (888)
T ss_pred             EEEEEecCCCceEEEeccCCceEEEEee------hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec
Confidence            8899999988 99999999999999987      3445556678999999999999999999999999999999743221


Q ss_pred             -cccc--------cCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccC
Q 046226          318 -QLQY--------GGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFG  386 (434)
Q Consensus       318 -~~~~--------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  386 (434)
                       ....        ...+ .-...|.|+.++  +.+|+++--|.+++||-+++-   +..-.+.||.-||.|+.++|+   
T Consensus       489 ~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl---KFflsLYGHkLPV~smDIS~D---  561 (888)
T KOG0306|consen  489 VPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL---KFFLSLYGHKLPVLSMDISPD---  561 (888)
T ss_pred             cCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecce---eeeeeecccccceeEEeccCC---
Confidence             0000        0111 123467888776  779999999999999999987   778889999999999999999   


Q ss_pred             CCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          387 EETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       387 ~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                            +.+++|||.|..|+||-++=|....
T Consensus       562 ------SklivTgSADKnVKiWGLdFGDCHK  586 (888)
T KOG0306|consen  562 ------SKLIVTGSADKNVKIWGLDFGDCHK  586 (888)
T ss_pred             ------cCeEEeccCCCceEEeccccchhhh
Confidence                  8999999999999999998776543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-34  Score=252.50  Aligned_cols=245  Identities=21%  Similarity=0.372  Sum_probs=222.2

Q ss_pred             eccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec
Q 046226          127 RLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV  204 (434)
Q Consensus       127 ~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  204 (434)
                      .+..+...|-++.++|.  .++++-.+|.|.||+.++...++.+.+                      ..-+|++..|-+
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV----------------------~~~PvRa~kfia   65 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV----------------------SEVPVRAAKFIA   65 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee----------------------cccchhhheeee
Confidence            45568899999999997  888888899999999999888888865                      556789999999


Q ss_pred             CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226          205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY  283 (434)
Q Consensus       205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  283 (434)
                      -.+++++|+.|..|+||+.++++.+..|..|.+.|+|++.+|.. ++++++.|-.|++||..     ........+.+|.
T Consensus        66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we-----~~wa~~qtfeGH~  140 (794)
T KOG0276|consen   66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE-----NEWACEQTFEGHE  140 (794)
T ss_pred             ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc-----CceeeeeEEcCcc
Confidence            99999999999999999999999999999999999999999999 99999999999999987     6778888999999


Q ss_pred             cCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CC---EEEEecCCCcEEEEeccC
Q 046226          284 SPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-AN---YVISGSADSTSRVWAREQ  358 (434)
Q Consensus       284 ~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~---~l~s~~~dg~i~iwd~~~  358 (434)
                      .-|.+++|.| |.+.+++++-|++|++|.+.....    ..++.+|...|.|+.+- +.   +|++|++|.+|+|||..+
T Consensus       141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             eEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence            9999999999 678999999999999999864433    34677999999999985 33   999999999999999999


Q ss_pred             CCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          359 DGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       359 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      .   .|++++.||...|..+.|+|.         -.+|+|||+||+||||+-.+-+
T Consensus       217 k---~CV~TLeGHt~Nvs~v~fhp~---------lpiiisgsEDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  217 K---SCVQTLEGHTNNVSFVFFHPE---------LPIIISGSEDGTVRIWNSKTYK  260 (794)
T ss_pred             H---HHHHHhhcccccceEEEecCC---------CcEEEEecCCccEEEecCccee
Confidence            7   899999999999999999998         7899999999999999977654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.1e-33  Score=247.72  Aligned_cols=281  Identities=18%  Similarity=0.329  Sum_probs=240.2

Q ss_pred             EEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCC
Q 046226           87 SVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDN  163 (434)
Q Consensus        87 ~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~  163 (434)
                      ++.||...|.++++ +.+.++..+..+.|+||+..+.+++.++...  .+.+..|-|.  ++++|...|.+.++|+....
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            46789999999999 4444444445689999999999999998754  7888999986  89999999999999998776


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC-----CeeEEEcc-----
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD-----SKCIETIQ-----  233 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~-----  233 (434)
                      .+...+                      .|.+.|++++.+||+..+++|+.|.+|++||..-     +...+.+.     
T Consensus       446 l~Eti~----------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r  503 (888)
T KOG0306|consen  446 LVETIR----------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR  503 (888)
T ss_pred             hhhhhh----------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence            666553                      5999999999999999999999999999999742     11111111     


Q ss_pred             --cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEE
Q 046226          234 --AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW  310 (434)
Q Consensus       234 --~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  310 (434)
                        .-...|.|+.++||+ +|+.+--|.+|++|-++      ..+....+.+|.-||.++.++||++.+++|+.|.+|+||
T Consensus       504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD------tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD------TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec------ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence              135689999999999 89999999999999877      667788899999999999999999999999999999999


Q ss_pred             EcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCC
Q 046226          311 HKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       311 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  388 (434)
                      -++-+.    +.+.+.+|...|+++.|-++  .+.+++.|+.|+-||-..-   .+++.+.+|...|+|++.+|+     
T Consensus       578 GLdFGD----CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF---e~iq~L~~H~~ev~cLav~~~-----  645 (888)
T KOG0306|consen  578 GLDFGD----CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF---EEIQKLDGHHSEVWCLAVSPN-----  645 (888)
T ss_pred             ccccch----hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh---hhheeeccchheeeeeEEcCC-----
Confidence            876443    34466799999999999765  8899999999999997765   899999999999999999999     


Q ss_pred             CCCcccEEEEeecCCeEEEEecCCC
Q 046226          389 TEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       389 ~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                          |.+++|+|.|.+|++|.-...
T Consensus       646 ----G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  646 ----GSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             ----CCeEEeccCCceeEeeeccCc
Confidence                999999999999999997653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-33  Score=218.09  Aligned_cols=260  Identities=20%  Similarity=0.272  Sum_probs=214.2

Q ss_pred             CCeEEEecCCCceeEeecc--CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226          111 SNVIRIWKQPEFTECGRLK--AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV  185 (434)
Q Consensus       111 dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
                      .|.+.|-++...+-+....  .-...+..++|+++   .+++++.||++++||+.....              ++     
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~--------------Pi-----   97 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK--------------PI-----   97 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc--------------ch-----
Confidence            5789998886544444332  23567999999985   899999999999999643221              11     


Q ss_pred             ccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEE
Q 046226          186 GKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVW  262 (434)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iw  262 (434)
                        ..+++|...|.++.|++. +..+++++.|++|++|+...++.+.++.+|...|....|+|..  ++++++.|+.+++|
T Consensus        98 --~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw  175 (311)
T KOG0277|consen   98 --HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLW  175 (311)
T ss_pred             --hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEE
Confidence              123479999999999984 5667888999999999999999999999999999999999876  99999999999999


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-  340 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  340 (434)
                      |++..     .+.. .+..|...+.++.|+. +.+.|++|+.|+.|++||++..+..   ...+.+|.-.|..+.+++. 
T Consensus       176 dvr~~-----gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p---l~eL~gh~~AVRkvk~Sph~  246 (311)
T KOG0277|consen  176 DVRSP-----GKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP---LFELNGHGLAVRKVKFSPHH  246 (311)
T ss_pred             EecCC-----Ccee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc---ceeecCCceEEEEEecCcch
Confidence            99822     2222 3677888999999988 6678999999999999999865543   4567899999999999854 


Q ss_pred             --EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          341 --YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       341 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                        .|++++.|-++||||...+.  .++.+...|++-+..+.|++-.        +.++|+++.|+.++||+-
T Consensus       247 ~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dws~~~--------~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  247 ASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDWSLFD--------PGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhHhhhccccceEEecccccch--hhhhhhhccceEEecccccccc--------Cceeeecccccceeeecc
Confidence              89999999999999998543  4666777899999999999875        789999999999999983

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.8e-34  Score=231.73  Aligned_cols=284  Identities=19%  Similarity=0.296  Sum_probs=233.8

Q ss_pred             eeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeecc--------CCCccEEEEEEeCC--EEEEEEcCCeEEE
Q 046226           89 LKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLK--------AKTSMVVAMEVSHD--RVYAAYGDGKIRV  156 (434)
Q Consensus        89 ~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~l~~~~~--~l~~~s~dg~i~v  156 (434)
                      ++....+-|..|  ||++|++|+.||.|.+||..+|+....++        -+..+|.|+.|+.|  .+++|+.||.|++
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            456677889999  99999999999999999999988765543        47789999999998  8999999999999


Q ss_pred             eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc
Q 046226          157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS  236 (434)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  236 (434)
                      |.+.++.+++.+..                     .|...|+|+.|+.|+..+++++.|.++++.-+.+|++++.+++|.
T Consensus       290 Wri~tG~ClRrFdr---------------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs  348 (508)
T KOG0275|consen  290 WRIETGQCLRRFDR---------------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS  348 (508)
T ss_pred             EEEecchHHHHhhh---------------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc
Confidence            99999988877742                     599999999999999999999999999999999999999999999


Q ss_pred             cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCc
Q 046226          237 EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       237 ~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      ..|+...|.++| .+++++.||+|++|+..........    ...+...+|.++..-| +-..++++....+|+|.++..
T Consensus       349 Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf----k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG  424 (508)
T KOG0275|consen  349 SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF----KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG  424 (508)
T ss_pred             ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc----cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence            999999999999 9999999999999997722221111    1223455788888777 456788888899999998753


Q ss_pred             ccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          315 FSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       315 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                      .-....-.....+...--.++++.|.++.+.++|+.++.|.+.++   .....+.-|...|..++-+|.         .+
T Consensus       425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPH---------qN  492 (508)
T KOG0275|consen  425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPH---------QN  492 (508)
T ss_pred             eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcc---------cc
Confidence            221111111122222223445667899999999999999999998   777888899999999999998         88


Q ss_pred             EEEEeecCCeEEEEe
Q 046226          395 TICTGSLDGVLKMWR  409 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~  409 (434)
                      .|++-++||.+++|.
T Consensus       493 llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  493 LLASYSEDGLLKLWK  507 (508)
T ss_pred             hhhhhcccchhhhcC
Confidence            999999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-32  Score=214.02  Aligned_cols=249  Identities=20%  Similarity=0.309  Sum_probs=210.5

Q ss_pred             eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226          124 ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA  201 (434)
Q Consensus       124 ~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  201 (434)
                      ....+..+.++|..+.|+.+  +.++++.|.+|++|+...+..++.+.                      +|...|.+++
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs----------------------ghG~EVlD~~   66 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----------------------GHGHEVLDAA   66 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec----------------------CCCceeeecc
Confidence            34567889999999999976  89999999999999988777776663                      7999999999


Q ss_pred             EecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226          202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT  280 (434)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  280 (434)
                      .+.|+..|++|+.|..+.+||+++|+.++.+.+|.+.|+.+.|+.+. .+++|+.|..+++||.+    ....++++.+.
T Consensus        67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR----S~s~ePiQild  142 (307)
T KOG0316|consen   67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR----SRSFEPIQILD  142 (307)
T ss_pred             ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcc----cCCCCccchhh
Confidence            99999999999999999999999999999999999999999999988 99999999999999998    23445666777


Q ss_pred             ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccC
Q 046226          281 AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       281 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      .....|.++.+.  +..+++|+.||+++.||++.......+    -+|  +|+|+.+  +++..++++-|+++++.|-.+
T Consensus       143 ea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy----~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~t  214 (307)
T KOG0316|consen  143 EAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY----FGH--PITSVSFSKDGNCSLASSLDSTLRLLDKET  214 (307)
T ss_pred             hhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh----cCC--cceeEEecCCCCEEEEeeccceeeecccch
Confidence            777889888885  578999999999999999866544332    244  6777766  578999999999999999999


Q ss_pred             CCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          359 DGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       359 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      +   +.+..+++|...-..+...-..       ....+++|++||.|++||+.+...+
T Consensus       215 G---klL~sYkGhkn~eykldc~l~q-------sdthV~sgSEDG~Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  215 G---KLLKSYKGHKNMEYKLDCCLNQ-------SDTHVFSGSEDGKVYFWDLVDETQI  262 (307)
T ss_pred             h---HHHHHhcccccceeeeeeeecc-------cceeEEeccCCceEEEEEeccceee
Confidence            8   8899999998765544333221       1678999999999999999987654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.4e-32  Score=253.03  Aligned_cols=271  Identities=24%  Similarity=0.403  Sum_probs=228.6

Q ss_pred             cCCCCCCCCCCCCCccCCCCCCCcccceee-------eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecC-CCcee
Q 046226           55 TSPLSSPRHPFNPTAAAGSSSPETSSSYRC-------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQ-PEFTE  124 (434)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~-~~~~~  124 (434)
                      ...+.+..+.+++..+++++.+..+..|..       ++.+.+|...|.+++|  ++.++++|+.|++|+|||+ ..+..
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~  238 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN  238 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence            566666778899999999999988877776       6667899999999999  8999999999999999999 55689


Q ss_pred             EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE
Q 046226          125 CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI  202 (434)
Q Consensus       125 ~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  202 (434)
                      +.++++|...|++++|+|+  .+++|+.|++|+|||+++++....+.                      +|.+.|.+++|
T Consensus       239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~----------------------~hs~~is~~~f  296 (456)
T KOG0266|consen  239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK----------------------GHSDGISGLAF  296 (456)
T ss_pred             EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee----------------------ccCCceEEEEE
Confidence            9999999999999999996  89999999999999999876666654                      69999999999


Q ss_pred             ecCCCEEEEEecCCcEEEEEcCCCe--eEEEcccCccC--eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226          203 NVSDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEP--INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       203 ~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  277 (434)
                      ++++++|++++.|+.|++||+.++.  ++..+..+...  ++++.|+|++ +++++..|+.+++||+.      ......
T Consensus       297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~------~~~~~~  370 (456)
T KOG0266|consen  297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR------SGKSVG  370 (456)
T ss_pred             CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc------CCccee
Confidence            9999999999999999999999998  56777766555  9999999999 99999999999999998      333444


Q ss_pred             EecccccC---eEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc-ccceEEEEee--CCEEEEec--CCC
Q 046226          278 TLTAKYSP---VKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASV--ANYVISGS--ADS  349 (434)
Q Consensus       278 ~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~--~dg  349 (434)
                      .+.+|...   +.+...++.+.++++|+.|+.|++||+...    .....+.+| ...+..++++  .+++++++  .|+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~----~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~  446 (456)
T KOG0266|consen  371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG----GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG  446 (456)
T ss_pred             eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc----chhhhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence            44555543   344455778999999999999999998643    333456688 7778887776  66888888  789


Q ss_pred             cEEEEecc
Q 046226          350 TSRVWARE  357 (434)
Q Consensus       350 ~i~iwd~~  357 (434)
                      .+++|..+
T Consensus       447 ~~~~w~~~  454 (456)
T KOG0266|consen  447 LIRLWKYD  454 (456)
T ss_pred             eEEEecCC
Confidence            99999754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-33  Score=232.73  Aligned_cols=285  Identities=15%  Similarity=0.243  Sum_probs=233.2

Q ss_pred             eEEEeeccccEEEEEE--c-CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCC
Q 046226           85 ISSVLKKDGQILCIAV--G-NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTW  161 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~  161 (434)
                      +..|.||.+.|.|++-  . -..+++|+.||.|+|||+.+..+..++++|.+.|..|++..+.+++++.|.+|+.|.+..
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC
Confidence            5567899999999998  2 257999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA  241 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  241 (434)
                      . ....+                       .....+..+.-+..+..+++++.  .|-|||.+...++..+.-....|.+
T Consensus       139 ~-p~~ti-----------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s  192 (433)
T KOG0268|consen  139 P-PLHTI-----------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISS  192 (433)
T ss_pred             C-cceee-----------------------eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeE
Confidence            2 11111                       24456677777777888999885  4999999988999999988889999


Q ss_pred             EEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226          242 LVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       242 ~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  319 (434)
                      +.|+|..  .|++|+.|+.|.+||++  +.....+.+..     ..-+.|+|+|..-.+++|.+|..++.||++..... 
T Consensus       193 vkfNpvETsILas~~sDrsIvLyD~R--~~~Pl~KVi~~-----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p-  264 (433)
T KOG0268|consen  193 VKFNPVETSILASCASDRSIVLYDLR--QASPLKKVILT-----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP-  264 (433)
T ss_pred             EecCCCcchheeeeccCCceEEEecc--cCCccceeeee-----ccccceecCccccceeeccccccceehhhhhhccc-
Confidence            9999987  88899999999999999  34444444433     34567999998888999999999999999755444 


Q ss_pred             cccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEE
Q 046226          320 QYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC  397 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~  397 (434)
                        .....+|...|++++|+  |+-+++|+.|.+|+||..+.+.......+  -.-..|.|+.|+.|         .++++
T Consensus       265 --~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~D---------skyi~  331 (433)
T KOG0268|consen  265 --LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMD---------SKYII  331 (433)
T ss_pred             --chhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecc---------ccEEE
Confidence              34667999999999997  77999999999999999987632111111  11346899999999         89999


Q ss_pred             EeecCCeEEEEecCCCCcc
Q 046226          398 TGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       398 s~~~Dg~v~iw~~~~~~~~  416 (434)
                      +||+|+.|++|.-...+++
T Consensus       332 SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  332 SGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             ecCCCcceeeeecchhhhc
Confidence            9999999999998765544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.1e-31  Score=213.83  Aligned_cols=293  Identities=19%  Similarity=0.319  Sum_probs=230.1

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC--CEEEEEEc--CCeEE
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH--DRVYAAYG--DGKIR  155 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~s~--dg~i~  155 (434)
                      ++.-+.+..-.+.|+++.|  +|.+|++++.|.+++|||..+++.+.++..+.-.|..+.|..  +.++.++.  |.+|+
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            3444455556788999999  899999999999999999999999999998888888888854  36666666  89999


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  235 (434)
                      ..++..++.++.+.                      ||...|.+++.+|-+..+++++.|++|++||++..++...+...
T Consensus        84 yLsl~dNkylRYF~----------------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~  141 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFP----------------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS  141 (311)
T ss_pred             EEEeecCceEEEcC----------------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC
Confidence            99998887777764                      89999999999999999999999999999999988887766544


Q ss_pred             ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          236 SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       236 ~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      ..+  .+++.|+| .+|++...+.|++||++............. .+.....+.+.|+|+|++++.++..+.+++.|.-.
T Consensus       142 ~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~  218 (311)
T KOG1446|consen  142 GRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD  218 (311)
T ss_pred             CCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence            433  57899999 666776666999999996655444333322 24567889999999999999999999999999755


Q ss_pred             ccccccccCcccCcccce-EEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeec-cccceeEEEEeecccCCCCCCc
Q 046226          315 FSAQLQYGGALQGHTHAV-MCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG-HRGPIRCAIAFLGRFGEETEDE  392 (434)
Q Consensus       315 ~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~  392 (434)
                      +.....+.........++ .++.++++++++|+.||+|.+|+++++   ..+..+.+ +.+++.++.|.|.         
T Consensus       219 G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~~~~~~~~~~~fnP~---------  286 (311)
T KOG1446|consen  219 GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG---KKVAVLRGPNGGPVSCVRFNPR---------  286 (311)
T ss_pred             CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC---cEeeEecCCCCCCccccccCCc---------
Confidence            443332221111111122 345568899999999999999999998   67777777 7899999999998         


Q ss_pred             ccEEEEeecCCeEEEEecCCC
Q 046226          393 YCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       393 ~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      ..+++|+  +..+-+|=....
T Consensus       287 ~~mf~sa--~s~l~fw~p~~~  305 (311)
T KOG1446|consen  287 YAMFVSA--SSNLVFWLPDED  305 (311)
T ss_pred             eeeeeec--CceEEEEecccc
Confidence            4555555  567888876644

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-33  Score=252.47  Aligned_cols=252  Identities=20%  Similarity=0.348  Sum_probs=221.8

Q ss_pred             ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC
Q 046226          128 LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS  205 (434)
Q Consensus       128 ~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  205 (434)
                      +...+..|-.++|+|.  .++++-..|.|++||.+-+..+..+.                      +|.++|+.++|+|.
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd----------------------eHdGpVRgv~FH~~   62 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD----------------------EHDGPVRGVDFHPT   62 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh----------------------ccCCccceeeecCC
Confidence            4455678999999997  89999999999999998776666553                      79999999999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS  284 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  284 (434)
                      +.+|++|+.|-.|++|+..+.+++.++.+|-+.|..+.|++.- .+++++.|.+|+||+..      ....+..+.+|..
T Consensus        63 qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq------sr~~iavltGHnH  136 (1202)
T KOG0292|consen   63 QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ------SRKCIAVLTGHNH  136 (1202)
T ss_pred             CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc------CCceEEEEecCce
Confidence            9999999999999999999999999999999999999999888 99999999999999987      6778889999999


Q ss_pred             CeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc-------------------------ccccCcccCcccceEEEEeeC
Q 046226          285 PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ-------------------------LQYGGALQGHTHAVMCLASVA  339 (434)
Q Consensus       285 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~  339 (434)
                      .|.|..|+|....+++++-|.+|++||+......                         ......+.||...|...+|.+
T Consensus       137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence            9999999999999999999999999998642211                         111235678999999999998


Q ss_pred             --CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          340 --NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       340 --~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                        -.+++|++|..|++|.+...+. -.+.+..+|.+.|.++.|+|.         ..+|+|.|+|++|++||+...+.+.
T Consensus       217 TlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~---------q~lIlSnsEDksirVwDm~kRt~v~  286 (1202)
T KOG0292|consen  217 TLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPH---------QDLILSNSEDKSIRVWDMTKRTSVQ  286 (1202)
T ss_pred             CcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCc---------cceeEecCCCccEEEEeccccccee
Confidence              4899999999999999987643 355678899999999999998         7899999999999999999876543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.6e-31  Score=265.90  Aligned_cols=283  Identities=15%  Similarity=0.242  Sum_probs=228.8

Q ss_pred             cccccCCCCCCCCCCCCCccCCCCCCCcccceeeeE------------EEeeccccEEEEEE---cCCEEEEEeCCCeEE
Q 046226           51 ISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCIS------------SVLKKDGQILCIAV---GNGFIYTGSDSNVIR  115 (434)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~  115 (434)
                      +..|...+.+..+.+++..+++++.+..++.|+.-.            ....+...|.+++|   .+.+|++++.||+|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            455788888888999999999999999999987421            11224567899999   478999999999999


Q ss_pred             EecCCCceeEeeccCCCccEEEEEEeC-C--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccC
Q 046226          116 IWKQPEFTECGRLKAKTSMVVAMEVSH-D--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK  192 (434)
Q Consensus       116 iwd~~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (434)
                      +||+.+++.+..+.+|...|++++|+| +  .|++|+.||.|++||+..+..+..+.                       
T Consensus       559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------------------  615 (793)
T PLN00181        559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------------------  615 (793)
T ss_pred             EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------------------
Confidence            999999999999999999999999986 3  79999999999999998765544331                       


Q ss_pred             cCCCeEEEEEe-cCCCEEEEEecCCcEEEEEcCCCe-eEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCc
Q 046226          193 HMGPITSIAIN-VSDDTLYSASLDKTIKVWRIRDSK-CIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       193 ~~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      +...|.++.|+ +++.+|++|+.||.|++||++..+ .+..+.+|...|.++.|.+...|++++.|+.|++||++.....
T Consensus       616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG  695 (793)
T ss_pred             cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccc
Confidence            34578999995 568999999999999999998765 5677888999999999985559999999999999998732222


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc---------cCcccCcccceEEEEee--C
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY---------GGALQGHTHAVMCLASV--A  339 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~v~~~~~~--~  339 (434)
                      .....+..+.+|...+..++|++++.+|++|+.|+.|++|+.........+         ......+...|.+++|+  +
T Consensus       696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~  775 (793)
T PLN00181        696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS  775 (793)
T ss_pred             cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence            223456678889999999999999999999999999999997543221111         01123455678899886  5


Q ss_pred             CEEEEecCCCcEEEEec
Q 046226          340 NYVISGSADSTSRVWAR  356 (434)
Q Consensus       340 ~~l~s~~~dg~i~iwd~  356 (434)
                      ..|++|+.||.|+||++
T Consensus       776 ~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        776 STLVAANSTGNIKILEM  792 (793)
T ss_pred             CeEEEecCCCcEEEEec
Confidence            69999999999999986

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=211.99  Aligned_cols=279  Identities=14%  Similarity=0.166  Sum_probs=230.2

Q ss_pred             EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEee--ccCCCccEEEEEEeC---CEEEEEEcCCeEEEee
Q 046226           86 SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGR--LKAKTSMVVAMEVSH---DRVYAAYGDGKIRVWR  158 (434)
Q Consensus        86 ~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~---~~l~~~s~dg~i~vwd  158 (434)
                      +.+++|.+.|.+++|  +|..|++|+.|+++++|+++.......  ..+|.+.|..++|+|   +.+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            557789999999999  999999999999999999987654433  568999999999976   4999999999999999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP  238 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  238 (434)
                      ++..+......                       ....=.-+.|+|+|.+++++..|..|...|.++.+.+...+ ....
T Consensus        94 ~r~~k~~~~i~-----------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e  149 (313)
T KOG1407|consen   94 IRSGKCTARIE-----------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFE  149 (313)
T ss_pred             eccCcEEEEee-----------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccce
Confidence            99888776663                       33444567899999999999999999999999888776665 4556


Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      +..+.|+.++ +++.....|.|.|....      ..+.+..+..|.....+|.|+|+|++|++|+.|..+.+||++    
T Consensus       150 ~ne~~w~~~nd~Fflt~GlG~v~ILsyp------sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~----  219 (313)
T KOG1407|consen  150 VNEISWNNSNDLFFLTNGLGCVEILSYP------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD----  219 (313)
T ss_pred             eeeeeecCCCCEEEEecCCceEEEEecc------ccccccccccCCcceEEEEECCCCceEeeccccceeeccChh----
Confidence            7788888666 66666677999998655      556778889999999999999999999999999999999975    


Q ss_pred             cccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccE
Q 046226          318 QLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT  395 (434)
Q Consensus       318 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  395 (434)
                      .+.....+.-+.-+|..++|+  |++||+|++|..|-|=++++|   ..+..+ .+.++...++|+|.         ..+
T Consensus       220 ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG---d~~~eI-~~~~~t~tVAWHPk---------~~L  286 (313)
T KOG1407|consen  220 ELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG---DRVWEI-PCEGPTFTVAWHPK---------RPL  286 (313)
T ss_pred             HhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC---CeEEEe-eccCCceeEEecCC---------Cce
Confidence            344445666788899888885  889999999999999999998   445444 46888999999999         677


Q ss_pred             EEEeecC---------CeEEEEecC
Q 046226          396 ICTGSLD---------GVLKMWRVT  411 (434)
Q Consensus       396 l~s~~~D---------g~v~iw~~~  411 (434)
                      ||-++.|         |.|+++-+.
T Consensus       287 LAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  287 LAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             eeEEecCCCCccccccceeEEecCC
Confidence            8777654         456666544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-32  Score=247.56  Aligned_cols=253  Identities=18%  Similarity=0.269  Sum_probs=196.1

Q ss_pred             eeeeEEEe-eccccEEEEEE--cCCEEEEEeCCCeEEEecCCC-------------------------------------
Q 046226           82 YRCISSVL-KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE-------------------------------------  121 (434)
Q Consensus        82 ~~~~~~~~-~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~-------------------------------------  121 (434)
                      ....+.+. .|.++|+|+.|  +|+|||+||.|+.|+||.+..                                     
T Consensus       256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            33344566 89999999999  999999999999999997643                                     


Q ss_pred             -----------------------ceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226          122 -----------------------FTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus       122 -----------------------~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                                             .+++..+++|.+.|.+|.|+.+ +|++++.|.+|++|++...++++.+         
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F---------  406 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF---------  406 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE---------
Confidence                                   0122346789999999999997 8999999999999999988888877         


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD  255 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~  255 (434)
                                    .|.+.|+||+|+| |.++|++|+-||.|+||++...+.+. +..-..-|+++++.|+| ..+.|+.
T Consensus       407 --------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~  471 (712)
T KOG0283|consen  407 --------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTF  471 (712)
T ss_pred             --------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEe
Confidence                          5999999999999 78999999999999999997766544 44445899999999999 9999999


Q ss_pred             CCeEEEEecccccCcceeEEEEE--ecccccCeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccccCcccCcccce
Q 046226          256 DATVRVWRRYFYSENQLHTLILT--LTAKYSPVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV  332 (434)
Q Consensus       256 dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  332 (434)
                      +|.+++|+.....-.....+...  .......|+.+.+.|.. ..+++.+.|..|+|||.+......++......+...-
T Consensus       472 ~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~  551 (712)
T KOG0283|consen  472 NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQIS  551 (712)
T ss_pred             ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCccee
Confidence            99999999872111111111100  01112379999999843 4688889999999999865555555443333333333


Q ss_pred             EEEEeeCCEEEEecCCCcEEEEeccC
Q 046226          333 MCLASVANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       333 ~~~~~~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      ..+..+|++|+++++|..|+||++..
T Consensus       552 Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  552 ASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             eeEccCCCEEEEeecCceEEEEeCCC
Confidence            45566899999999999999999743

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=1.2e-31  Score=226.12  Aligned_cols=277  Identities=18%  Similarity=0.278  Sum_probs=233.7

Q ss_pred             ccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceee
Q 046226           93 GQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHV  168 (434)
Q Consensus        93 ~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~  168 (434)
                      ..|+++..  ..+.++||+.|..+.++|.+..+.+..+++|...|+.+.++++  .+++++.|..|+||...........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            35777777  4489999999999999999999999999999999999999997  7889999999999988655433333


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcC
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA--HSEPINALVVAD  246 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~  246 (434)
                                            ..|..+|+.+..+|.|.||++++.||+..+.|++++.++.....  ..-.+++.+|+|
T Consensus       300 ----------------------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  300 ----------------------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             ----------------------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence                                  25999999999999999999999999999999999988776654  234689999999


Q ss_pred             CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc
Q 046226          247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL  325 (434)
Q Consensus       247 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  325 (434)
                      || .|.+|..|+.|++||+.      .......+.+|.++|..++|+.+|-+|++++.|+.|++||++....-..+  .+
T Consensus       358 DgLifgtgt~d~~vkiwdlk------s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~--~l  429 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLK------SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI--QL  429 (506)
T ss_pred             CceEEeccCCCceEEEEEcC------CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee--ec
Confidence            99 89999999999999998      34467788899999999999999999999999999999999865432222  11


Q ss_pred             cCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC
Q 046226          326 QGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG  403 (434)
Q Consensus       326 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg  403 (434)
                       .....+.++.|+  |.+|+.++.|=.|++++-.+ +.+.++..+..|.+..+++.|...         .++++++|.|.
T Consensus       430 -~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~---------aq~l~s~smd~  498 (506)
T KOG0289|consen  430 -DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEH---------AQYLASTSMDA  498 (506)
T ss_pred             -cccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeeccc---------ceEEeeccchh
Confidence             122256666665  88999998887777777554 366888899999999999999888         89999999999


Q ss_pred             eEEEEec
Q 046226          404 VLKMWRV  410 (434)
Q Consensus       404 ~v~iw~~  410 (434)
                      .++++.+
T Consensus       499 ~l~~~a~  505 (506)
T KOG0289|consen  499 ILRLYAL  505 (506)
T ss_pred             heEEeec
Confidence            9998865

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.2e-32  Score=218.98  Aligned_cols=317  Identities=15%  Similarity=0.250  Sum_probs=250.1

Q ss_pred             ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEE
Q 046226           81 SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRV  156 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~v  156 (434)
                      .+++++.+.||.+.|+.++.  ....+.+++.|.+-+||.++++.++..+.+|.+.|+++.|++.  .+++++.|++-.|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            46678889999999999999  5668999999999999999999999999999999999999986  7889999999999


Q ss_pred             eecC------CCCCceee----Eee----eccCC----CCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcE
Q 046226          157 WRST------WDNGVKHV----KLA----TIPKT----GGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTI  218 (434)
Q Consensus       157 wd~~------~~~~~~~~----~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  218 (434)
                      |...      .+......    ...    ..+..    ...-..+..+...+.+|...|.+..|...++.+++++.|.+.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            9731      11100000    000    00000    001112334444677899999999999999999999999999


Q ss_pred             EEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226          219 KVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL  297 (434)
Q Consensus       219 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  297 (434)
                      .+||+++++.+..+.+|....+.++-+|.. ++++.+.|-+.++||.+     .....+..+.+|...|++..|..+ ..
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-----eaI~sV~VFQGHtdtVTS~vF~~d-d~  370 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-----EAIQSVAVFQGHTDTVTSVVFNTD-DR  370 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch-----hhcceeeeecccccceeEEEEecC-Cc
Confidence            999999999999999999999999999998 88999999999999988     455567789999999999999876 56


Q ss_pred             EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCcee-eEEEeeccccc
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHT-MLAVLVGHRGP  374 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~  374 (434)
                      +++|+.|.+|++||++........+.    ...++..++.+  +..++.--++..|++||++...... +...-++|...
T Consensus       371 vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM  446 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM  446 (481)
T ss_pred             eeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccccee
Confidence            88999999999999986655443221    22345555554  4588888888999999998653211 12245689999


Q ss_pred             eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      |.|++|..+..       -+-|+++|.|..+.-|++..++
T Consensus       447 V~c~AW~eehp-------~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  447 VTCCAWLEEHP-------ACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eeeeeccccCc-------ccccccccccceeeeeEecccC
Confidence            99999997632       3458999999999999998764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.7e-32  Score=249.98  Aligned_cols=267  Identities=24%  Similarity=0.394  Sum_probs=227.7

Q ss_pred             CCccCCCCCCCcccceee-----eEE-EeeccccEEEEEEc--CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEE
Q 046226           67 PTAAAGSSSPETSSSYRC-----ISS-VLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAM  138 (434)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~-----~~~-~~~h~~~v~~~~~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  138 (434)
                      ...+.+++.+.++..|.+     +.+ +.||.+.|.++++.  +++|++|+.|.++++||..++++...+.+|...|.++
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL  297 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence            556667777777766655     444 89999999999994  9999999999999999999999999999999999999


Q ss_pred             EEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcE
Q 046226          139 EVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTI  218 (434)
Q Consensus       139 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  218 (434)
                      ...+..+++|+.|.+|++|++.++..+..+.                      +|..+|+++..+  +.++++|+.|++|
T Consensus       298 ~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~----------------------~h~~~V~~v~~~--~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  298 TIDPFLLVSGSRDNTVKVWDVTNGACLNLLR----------------------GHTGPVNCVQLD--EPLLVSGSYDGTV  353 (537)
T ss_pred             EccCceEeeccCCceEEEEeccCcceEEEec----------------------cccccEEEEEec--CCEEEEEecCceE
Confidence            9999999999999999999999777666653                      599999999997  8999999999999


Q ss_pred             EEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226          219 KVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL  298 (434)
Q Consensus       219 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  298 (434)
                      ++||+.+++++..+.+|...|.++.+.....+++|+.|+.|++||++...     ..+..+.+|..-+..+.+  .+++|
T Consensus       354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~--~~~~L  426 (537)
T KOG0274|consen  354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLL--RDNFL  426 (537)
T ss_pred             EEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh-----hhhhhhcCCccccccccc--cccee
Confidence            99999999999999999999999988865799999999999999998211     677788888888866654  56899


Q ss_pred             EEEcCCCeEEEEEcCcccccccccCcccC-cccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226          299 YGGCTDGYIHYWHKGWFSAQLQYGGALQG-HTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       299 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                      ++++.|+.|++||........    .+.+ |...|.++......+++++.||.+++||++++   .+...+-.+
T Consensus       427 vs~~aD~~Ik~WD~~~~~~~~----~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~---~~~~~l~~~  493 (537)
T KOG0274|consen  427 VSSSADGTIKLWDAEEGECLR----TLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSG---TLIRTLLST  493 (537)
T ss_pred             EeccccccEEEeecccCceee----eeccCCcccEEEeecCcceEEEEecCCeeEEEecccC---chhhhhhhc
Confidence            999999999999976544333    3444 67888888888778899999999999999998   454444333

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1e-31  Score=222.93  Aligned_cols=294  Identities=19%  Similarity=0.278  Sum_probs=226.3

Q ss_pred             cccCCCCCCCCCCCCCccCCCCCCCcccce----eeeEEEeeccccEEEEEE--c---CCEEEEEeCCCeEEEecCCCce
Q 046226           53 LHTSPLSSPRHPFNPTAAAGSSSPETSSSY----RCISSVLKKDGQILCIAV--G---NGFIYTGSDSNVIRIWKQPEFT  123 (434)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~--~---~~~l~tg~~dg~i~iwd~~~~~  123 (434)
                      .|..-+.+....  +.-+.++++|++.+.|    +++.++.||.++|.++++  .   ...|++++.|.++++|.++.++
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            344455554443  7788999999987765    568889999999999999  2   3369999999999999887654


Q ss_pred             eE----eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC----CceeEEEeccccccCc
Q 046226          124 EC----GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG----GAVRNLIVGKDKMMKH  193 (434)
Q Consensus       124 ~~----~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  193 (434)
                      ..    ...++|...|.++...++  .+++|+.|.+|++|+...... ..++-.......    ........+...+.+|
T Consensus       181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            33    334589999999998886  899999999999999332211 111100000000    0000001111234589


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce
Q 046226          194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      ..+|.++.|++ ...+++++.|.+|+.||++++..+.++. ....++|+..++.. +|++|+.|..|++||.+..   ..
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~---~g  334 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG---DG  334 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCC---CC
Confidence            99999999986 7889999999999999999999988887 45678999999988 9999999999999999833   34


Q ss_pred             eEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CCEEEEecCCCc
Q 046226          273 HTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGSADST  350 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~  350 (434)
                      ......+.+|.+.|.++.|+|. ...|++|+.|+++++||++.....+   ..+.+|...|.++.|+ +.++++|+.|.+
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl---ydI~~h~DKvl~vdW~~~~~IvSGGaD~~  411 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL---YDIAGHNDKVLSVDWNEGGLIVSGGADNK  411 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc---eeeccCCceEEEEeccCCceEEeccCcce
Confidence            4556788899999999999995 4578899999999999998665443   3567999999999997 559999999999


Q ss_pred             EEEEecc
Q 046226          351 SRVWARE  357 (434)
Q Consensus       351 i~iwd~~  357 (434)
                      |+|+.-.
T Consensus       412 l~i~~~~  418 (423)
T KOG0313|consen  412 LRIFKGS  418 (423)
T ss_pred             EEEeccc
Confidence            9999654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-31  Score=212.62  Aligned_cols=266  Identities=18%  Similarity=0.265  Sum_probs=213.4

Q ss_pred             EEEEEeCCCeEEEecCCC------------ceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226          104 FIYTGSDSNVIRIWKQPE------------FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus       104 ~l~tg~~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      .+++|++...|.-+++.-            ...+..+..|.+.|++++.+..++++|+.|.+|+|||+........+.  
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll--   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILL--   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhccee--
Confidence            367788777776665421            223556788999999999999999999999999999998776665553  


Q ss_pred             eccCCCCceeEEEeccccccCcCCCeEEEEEecCCC--EEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-
Q 046226          172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD--TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-  248 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  248 (434)
                                          .|.+.|+++.|.+.-.  .|++|+.||.|.+|+.....++..+++|.+.|+.++++|.+ 
T Consensus        81 --------------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K  140 (362)
T KOG0294|consen   81 --------------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK  140 (362)
T ss_pred             --------------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc
Confidence                                5999999999998765  89999999999999999999999999999999999999999 


Q ss_pred             eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226          249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      +-++.+.|+.+++||+-.....    ....+   ....+.+.|+|.|.+++.+..+ .|-+|.+.......+..     .
T Consensus       141 LALsVg~D~~lr~WNLV~Gr~a----~v~~L---~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-----~  207 (362)
T KOG0294|consen  141 LALSVGGDQVLRTWNLVRGRVA----FVLNL---KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE-----N  207 (362)
T ss_pred             eEEEEcCCceeeeehhhcCccc----eeecc---CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh-----c
Confidence            7788999999999998622111    11111   1234459999999998888766 48899876443332221     1


Q ss_pred             ccceEEEEe-eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226          329 THAVMCLAS-VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       329 ~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                      ...+.|+.| ++..|++|++|+.|.+||..+.   .+...+.+|..+|.++.+..+.       ++.+|+|+|.||.|++
T Consensus       208 ~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~-------~~~~lvTaSSDG~I~v  277 (362)
T KOG0294|consen  208 PKRILCATFLDGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTNP-------EHEYLVTASSDGFIKV  277 (362)
T ss_pred             cccceeeeecCCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEecC-------CceEEEEeccCceEEE
Confidence            245677777 5789999999999999999986   7889999999999999866442       2789999999999999


Q ss_pred             EecCCCC
Q 046226          408 WRVTRPK  414 (434)
Q Consensus       408 w~~~~~~  414 (434)
                      ||++..+
T Consensus       278 Wd~~~~~  284 (362)
T KOG0294|consen  278 WDIDMET  284 (362)
T ss_pred             EEccccc
Confidence            9998763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.2e-31  Score=231.66  Aligned_cols=275  Identities=26%  Similarity=0.407  Sum_probs=232.0

Q ss_pred             CCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC
Q 046226           49 SPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE  121 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~  121 (434)
                      ..+.+|..++.+..+.+++..+++++.+..+..|+.     ...+..|...+.++.|  ++++|++++.||.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            346688889999999888889998888888777765     4667889999999999  677999999999999999999


Q ss_pred             ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          122 FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      ++.+..+..|...|.++.|+++  .+++++.|+.|.+||+...+....+.                      .|...|.+
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------~~~~~i~~  140 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR----------------------GHTDWVNS  140 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----------------------cCCCcEEE
Confidence            8888888899999999999996  55555569999999997554333331                      48889999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226          200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  278 (434)
                      ++|+|++.++++++.|+.|++||+++++.+..+..|...+.++.|++++ .+++++.|+.|++||++      .......
T Consensus       141 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~------~~~~~~~  214 (289)
T cd00200         141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS------TGKCLGT  214 (289)
T ss_pred             EEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECC------CCceecc
Confidence            9999999999988889999999999999888998899999999999999 89999999999999987      2334445


Q ss_pred             ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEe
Q 046226          279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWA  355 (434)
Q Consensus       279 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd  355 (434)
                      +..+...+.+++|++++.++++++.||.|++||+......    ..+..|...+.++.+++  ++|++++.||.|++|+
T Consensus       215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV----QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE----EEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            5567789999999999888888888999999998653322    23447888899999875  7999999999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.9e-33  Score=236.34  Aligned_cols=257  Identities=15%  Similarity=0.218  Sum_probs=217.8

Q ss_pred             ceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCC-CCCceeeEeeeccCCCCceeEEEeccccccCcCCCe
Q 046226          122 FTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTW-DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPI  197 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  197 (434)
                      .+.+..+.+|+..|.++.|.|.   +|++++.|+.|+||++.. +..++.+                      .+|..+|
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf----------------------~gH~k~V  261 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF----------------------KGHRKPV  261 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh----------------------hcchhhh
Confidence            3456778999999999999994   888999999999999875 3333333                      3899999


Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEE
Q 046226          198 TSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTL  275 (434)
Q Consensus       198 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~  275 (434)
                      .+++|+.+|..|++++.|+.|++||+++|+++..+. ....++|+.|+|++  .+++|+.|+.|+.||++      ..+.
T Consensus       262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR------s~kv  334 (503)
T KOG0282|consen  262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR------SGKV  334 (503)
T ss_pred             hhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc------chHH
Confidence            999999999999999999999999999999999987 45678999999998  89999999999999999      4556


Q ss_pred             EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEe
Q 046226          276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWA  355 (434)
Q Consensus       276 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd  355 (434)
                      +..+..|-+.|..+.|-++|+++++.+.|+.++||+.+... ..++......|.-+...+.+++.+++.-+.|+.|.+|.
T Consensus       335 vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  335 VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS  413 (503)
T ss_pred             HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence            77788888999999999999999999999999999986543 23334445567777777778899999999999999999


Q ss_pred             ccCCCceeeEEEeecccc--ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          356 REQDGRHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      +...-+......+++|..  --..+.|+||         |.+|++|+.||.+.+||.++-+...
T Consensus       414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpD---------G~~l~SGdsdG~v~~wdwkt~kl~~  468 (503)
T KOG0282|consen  414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPD---------GRTLCSGDSDGKVNFWDWKTTKLVS  468 (503)
T ss_pred             cccccccCHhhhhcceeccCceeeEEEcCC---------CCeEEeecCCccEEEeechhhhhhh
Confidence            877655556667888864  3456899999         9999999999999999999877543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1.1e-31  Score=217.15  Aligned_cols=288  Identities=17%  Similarity=0.266  Sum_probs=225.2

Q ss_pred             EEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC------------------ceeEeeccCCCccEEEEEEeCC--E
Q 046226           87 SVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE------------------FTECGRLKAKTSMVVAMEVSHD--R  144 (434)
Q Consensus        87 ~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~l~~~~~--~  144 (434)
                      .+..|++++.+-+|  ||.++|||+.|..|+|.|++.                  .-.+.++..|...|+++.|+|.  .
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            36679999999999  999999999999999999861                  1346678889999999999996  8


Q ss_pred             EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC
Q 046226          145 VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIR  224 (434)
Q Consensus       145 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  224 (434)
                      |++++.|++|+++|+......+.++.                    .....+|.++.|+|.|.+|++|....++++||++
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~--------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~  246 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKV--------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN  246 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHH--------------------hhccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence            89999999999999976544444322                    2366789999999999999999999999999999


Q ss_pred             CCeeEEEcc---cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe-ccc-ccCeEEEEEecCCCEE
Q 046226          225 DSKCIETIQ---AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL-TAK-YSPVKTLTLTLDDGLL  298 (434)
Q Consensus       225 ~~~~~~~~~---~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l  298 (434)
                      +.++...-.   .|.+.|+++.+++.+ +.++++.||.|++||--      ..+.+.++ ..| ...|.+..|..+++++
T Consensus       247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV------S~rCv~t~~~AH~gsevcSa~Ftkn~kyi  320 (430)
T KOG0640|consen  247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV------SNRCVRTIGNAHGGSEVCSAVFTKNGKYI  320 (430)
T ss_pred             ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc------cHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence            988766543   588999999999999 99999999999999844      11122221 233 3478999999999999


Q ss_pred             EEEcCCCeEEEEEcCcccccccccCc-ccCcccceEEEEee--CCEEEEecC-CCcEEEEeccCCCceeeEEEeeccccc
Q 046226          299 YGGCTDGYIHYWHKGWFSAQLQYGGA-LQGHTHAVMCLASV--ANYVISGSA-DSTSRVWAREQDGRHTMLAVLVGHRGP  374 (434)
Q Consensus       299 ~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~  374 (434)
                      ++.+.|..+++|.+.+......+... ..+...--+...|+  .+|++.-.+ .+.+.-||.++..+....  --+|.+.
T Consensus       321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~--slgHn~a  398 (430)
T KOG0640|consen  321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL--SLGHNGA  398 (430)
T ss_pred             eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc--ccCCCCC
Confidence            99999999999999877665555322 11111111233344  456665543 568999999987432222  2489999


Q ss_pred             eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      ++.+.-+|.         +..++||+.|-.+++|--.
T Consensus       399 ~R~i~HSP~---------~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  399 VRWIVHSPV---------EPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             ceEEEeCCC---------CCceeeecccceeeeeeec
Confidence            999999999         8899999999999999743

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-32  Score=212.16  Aligned_cols=236  Identities=20%  Similarity=0.263  Sum_probs=200.6

Q ss_pred             ccccEEEEEE---cCCEEEEEeCCCeEEEecCCC-ceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCC
Q 046226           91 KDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE-FTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDN  163 (434)
Q Consensus        91 h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~  163 (434)
                      -.+.+..++|   ..+.+++++.||.++|||+.. ..++..++.|...|.++.|++.   .+++++.|++|++|+...++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            3567889999   578899999999999999643 5678889999999999999984   68888999999999988777


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINAL  242 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  242 (434)
                      .+..+.                      +|...|...+|+|. .+++++++.|+++++||++..-....+..|...|.|+
T Consensus       139 Sv~Tf~----------------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~c  196 (311)
T KOG0277|consen  139 SVQTFN----------------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCC  196 (311)
T ss_pred             ceEeec----------------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEee
Confidence            666653                      79999999999994 7889999999999999998654444588899999999


Q ss_pred             EEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccc
Q 046226          243 VVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       243 ~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  319 (434)
                      .|+.-.  .++||+.|+.|+.||++     ....++..+.+|.-.|+.+.|+|. ...|++++.|-+++|||....... 
T Consensus       197 dw~ky~~~vl~Tg~vd~~vr~wDir-----~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~-  270 (311)
T KOG0277|consen  197 DWSKYNHNVLATGGVDNLVRGWDIR-----NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA-  270 (311)
T ss_pred             cccccCCcEEEecCCCceEEEEehh-----hccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh-
Confidence            999755  99999999999999999     445667788999999999999995 568999999999999998643332 


Q ss_pred             cccCcccCcccceEEEEee---CCEEEEecCCCcEEEEec
Q 046226          320 QYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAR  356 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~  356 (434)
                        ..+...|+.-+..+.|+   +.++|+++.|+.++||+-
T Consensus       271 --~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  271 --IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             --hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence              33556788889888886   779999999999999983

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=224.99  Aligned_cols=282  Identities=16%  Similarity=0.221  Sum_probs=230.1

Q ss_pred             CCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCccccee--------eeEEEeeccccEEEEEE--cCCEEEEEeCCCe
Q 046226           44 PPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR--------CISSVLKKDGQILCIAV--GNGFIYTGSDSNV  113 (434)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~  113 (434)
                      |.+..+.+..|.+.+....|+++++.++++++|.+.-.|.        ..+++.+|..+|..+.|  |.++|++++.|..
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            4555678899999999999999999999999998855544        46789999999999999  9999999999999


Q ss_pred             EEEecCCCceeEeeccC-CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226          114 IRIWKQPEFTECGRLKA-KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM  190 (434)
Q Consensus       114 i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
                      +++||+.++.....+.. +...+.+++|.||  .+++|+.|+.|..||++.+. ....+.                    
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~g--------------------  351 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEG--------------------  351 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccc--------------------
Confidence            99999999998877653 4678999999998  89999999999999987543 222210                    


Q ss_pred             cCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccC
Q 046226          191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSE  269 (434)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~  269 (434)
                       -....|.+++..+||+++++.+.|..|++++.++...+..+. ...+|+++.++.++ ++++--.+..+++||+.    
T Consensus       352 -vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~----  425 (519)
T KOG0293|consen  352 -VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLE----  425 (519)
T ss_pred             -cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecc----
Confidence             123469999999999999999999999999998766554333 55789999999999 77777889999999987    


Q ss_pred             cceeEEEEEecccccCe--EEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC---CEEE
Q 046226          270 NQLHTLILTLTAKYSPV--KTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA---NYVI  343 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v--~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~  343 (434)
                        ....+..+.+|...-  -.-||-- +..++++|++|+.|+||+..    ...+...+.||...|.|++|++   .++|
T Consensus       426 --e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~----sgkll~~LsGHs~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  426 --ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI----SGKLLAVLSGHSKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             --hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc----CCceeEeecCCcceeeEEecCCCCHHHhh
Confidence              444555666665542  2334433 55899999999999999954    4455567889999999999985   4899


Q ss_pred             EecCCCcEEEEeccC
Q 046226          344 SGSADSTSRVWAREQ  358 (434)
Q Consensus       344 s~~~dg~i~iwd~~~  358 (434)
                      ++++||+||||-...
T Consensus       500 SasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  500 SASDDGTIRIWGPSD  514 (519)
T ss_pred             ccCCCCeEEEecCCc
Confidence            999999999997764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=3e-32  Score=228.33  Aligned_cols=283  Identities=18%  Similarity=0.274  Sum_probs=230.3

Q ss_pred             eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce--eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEe
Q 046226           84 CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT--ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVW  157 (434)
Q Consensus        84 ~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vw  157 (434)
                      +...+..|.+.|..+.|  +...|++|+.|..|++|+....+  .+.++.+..+.|+.+.|.++  .+++++.|+.+++|
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW  246 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence            44556779999999999  55999999999999999987665  67778888899999999886  88899999999999


Q ss_pred             ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc
Q 046226          158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE  237 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  237 (434)
                      ++........+.                      +|.+.|+++.|......+++|+.|.+|++||+....|.+++. ...
T Consensus       247 nvd~~r~~~TLs----------------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S  303 (459)
T KOG0288|consen  247 NVDSLRLRHTLS----------------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGS  303 (459)
T ss_pred             eccchhhhhhhc----------------------ccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccc
Confidence            998766555553                      799999999998877779999999999999999988877765 445


Q ss_pred             CeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          238 PINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       238 ~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      .+.+|... ...+++|-.|++|++||++      ..........+ +.|+++..++++..|++++.|.++.++|+++...
T Consensus       304 ~cnDI~~~-~~~~~SgH~DkkvRfwD~R------s~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI  375 (459)
T KOG0288|consen  304 QCNDIVCS-ISDVISGHFDKKVRFWDIR------SADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI  375 (459)
T ss_pred             cccceEec-ceeeeecccccceEEEecc------CCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence            66677666 3378999999999999988      33334444444 4899999999999999999999999999987654


Q ss_pred             ccccc--CcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecccc--ceeEEEEeecccCCCCCCcc
Q 046226          318 QLQYG--GALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       318 ~~~~~--~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~  393 (434)
                      ...+.  ....+|.-.-.++++++.|+++|+.||.|+||++.++   ++...+.....  .|++++|+|.         |
T Consensus       376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~s---------G  443 (459)
T KOG0288|consen  376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPS---------G  443 (459)
T ss_pred             EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCC---------C
Confidence            44332  2223444344556667889999999999999999998   55555554443  5999999998         9


Q ss_pred             cEEEEeecCCeEEEEe
Q 046226          394 CTICTGSLDGVLKMWR  409 (434)
Q Consensus       394 ~~l~s~~~Dg~v~iw~  409 (434)
                      ..|++++.++.+.+|.
T Consensus       444 ~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  444 SGLLSADKQKAVTLWT  459 (459)
T ss_pred             chhhcccCCcceEecC
Confidence            9999999999999994

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=8.8e-31  Score=238.80  Aligned_cols=270  Identities=18%  Similarity=0.256  Sum_probs=201.3

Q ss_pred             eeEeecc-CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeE--------------------eee-------
Q 046226          123 TECGRLK-AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVK--------------------LAT-------  172 (434)
Q Consensus       123 ~~~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~--------------------~~~-------  172 (434)
                      ...+.+. .|.+.|+++.|++|  +||+|+.|+.|+||.+...+......                    ...       
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            3445566 89999999999998  99999999999999986622100000                    000       


Q ss_pred             -ccCCCCceeE----------EEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226          173 -IPKTGGAVRN----------LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA  241 (434)
Q Consensus       173 -~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  241 (434)
                       ....+.....          ...+...+.+|.+.|.++.|+. +++|++++.|.+|++|++...+|+..|. |.+.|+|
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc  414 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC  414 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence             0000000000          0112225778999999999985 5689999999999999999999999997 9999999


Q ss_pred             EEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226          242 LVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       242 ~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  319 (434)
                      ++|+|-.  ++++|+-||.||||++.      .. .+.....-..-|++++|.|+|+..++|+.+|.+++|+....+...
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~------d~-~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~  487 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSIS------DK-KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS  487 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecC------cC-eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence            9999966  99999999999999986      22 233334444789999999999999999999999999986544332


Q ss_pred             cccC-----cccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccc--eeEEEEeecccCCCC
Q 046226          320 QYGG-----ALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP--IRCAIAFLGRFGEET  389 (434)
Q Consensus       320 ~~~~-----~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~  389 (434)
                      ....     .-..|. .|+++.+.   .+.+++.+.|..|||||.++.   .++..|+|+...  -....|+.+      
T Consensus       488 ~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~D------  557 (712)
T KOG0283|consen  488 DFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSD------  557 (712)
T ss_pred             eeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccC------
Confidence            2211     111233 89999986   346888889999999999776   667777765442  345677777      


Q ss_pred             CCcccEEEEeecCCeEEEEecCCCC
Q 046226          390 EDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       390 ~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                         |++|+++++|..|++|++....
T Consensus       558 ---gk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  558 ---GKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             ---CCEEEEeecCceEEEEeCCCCc
Confidence               9999999999999999986543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.8e-30  Score=229.54  Aligned_cols=270  Identities=21%  Similarity=0.322  Sum_probs=225.5

Q ss_pred             EEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeecc
Q 046226           98 IAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIP  174 (434)
Q Consensus        98 ~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~  174 (434)
                      +.| ..+.|++|. +..|++|+..++........+...|+++.|+++  .|++|..+|.|.|||....+.+..+..    
T Consensus       183 ldWss~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~----  257 (484)
T KOG0305|consen  183 LDWSSANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG----  257 (484)
T ss_pred             hhcccCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC----
Confidence            444 466777776 468999999988866665556889999999986  899999999999999988777766641    


Q ss_pred             CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE-cccCccCeEEEEEcCCC-eEEE
Q 046226          175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET-IQAHSEPINALVVADDG-VLYS  252 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~s  252 (434)
                                       .|...|-+++|.  +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+ ++++
T Consensus       258 -----------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lAS  318 (484)
T KOG0305|consen  258 -----------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLAS  318 (484)
T ss_pred             -----------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeecc
Confidence                             289999999998  77899999999999999998776555 88899999999999999 9999


Q ss_pred             EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEc--CCCeEEEEEcCcccccccccCcccCcc
Q 046226          253 ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGC--TDGYIHYWHKGWFSAQLQYGGALQGHT  329 (434)
Q Consensus       253 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~  329 (434)
                      |+.|+.+.|||..      ...+...+..|...|..++|+| ...+||+|+  .|+.|++||..........     ...
T Consensus       319 GgnDN~~~Iwd~~------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-----dtg  387 (484)
T KOG0305|consen  319 GGNDNVVFIWDGL------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-----DTG  387 (484)
T ss_pred             CCCccceEeccCC------CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----ccC
Confidence            9999999999975      4556677888999999999999 567888864  5999999998644333221     344


Q ss_pred             cceEEEEeeCCE--EEE--ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeE
Q 046226          330 HAVMCLASVANY--VIS--GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVL  405 (434)
Q Consensus       330 ~~v~~~~~~~~~--l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v  405 (434)
                      ..|..+.|+..+  |++  |..++.|.||+..+.   ..+..+.+|...|..++++|+         |..|++|+.|.++
T Consensus       388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPd---------g~~i~t~a~DETl  455 (484)
T KOG0305|consen  388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPD---------GETIVTGAADETL  455 (484)
T ss_pred             CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCC---------CCEEEEecccCcE
Confidence            679999998542  443  456789999999986   888999999999999999999         9999999999999


Q ss_pred             EEEecCCCC
Q 046226          406 KMWRVTRPK  414 (434)
Q Consensus       406 ~iw~~~~~~  414 (434)
                      ++|++-...
T Consensus       456 rfw~~f~~~  464 (484)
T KOG0305|consen  456 RFWNLFDER  464 (484)
T ss_pred             EeccccCCC
Confidence            999998753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.98  E-value=3.6e-30  Score=229.22  Aligned_cols=280  Identities=21%  Similarity=0.365  Sum_probs=234.5

Q ss_pred             ceeeeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeE--eeccCCCccEEE-EEEeC---CEEEEEEcCCe
Q 046226           81 SYRCISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTEC--GRLKAKTSMVVA-MEVSH---DRVYAAYGDGK  153 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~-l~~~~---~~l~~~s~dg~  153 (434)
                      .++..+.+.+|+..|..+++ ++..+++++.||++++|+-...+.+  ..+.+|.+.|.. ++|.+   .++++|+.|.+
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             cceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            46778889999999999999 8888999999999999997554443  446778888877 77775   27999999999


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  233 (434)
                      |.+|...+......++                      +|...|.+++...++. +++|+.|.++++|-.  +++...+.
T Consensus        83 i~v~~~~~~~P~~~Lk----------------------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~  137 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLK----------------------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ  137 (745)
T ss_pred             EEEEecCCCCchhhhh----------------------ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccC
Confidence            9999988776665553                      7999999999887777 999999999999975  56777799


Q ss_pred             cCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          234 AHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      +|...|.++...|++.+++|+.|..|++|.        ......++.+|..-|+.+++-++ ..+++++.||.|++|++.
T Consensus       138 gH~asVWAv~~l~e~~~vTgsaDKtIklWk--------~~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~  208 (745)
T KOG0301|consen  138 GHTASVWAVASLPENTYVTGSADKTIKLWK--------GGTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD  208 (745)
T ss_pred             CcchheeeeeecCCCcEEeccCcceeeecc--------CCchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc
Confidence            999999999999999999999999999995        34567788899999999999976 457899999999999983


Q ss_pred             cccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCC
Q 046226          314 WFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETED  391 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  391 (434)
                      .     +......+|+.-|.+++.  ++..++++++|++++||+..     .+.+.+.--...|+++.+.++        
T Consensus       209 g-----e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~N--------  270 (745)
T KOG0301|consen  209 G-----EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLN--------  270 (745)
T ss_pred             C-----ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeC--------
Confidence            2     222355699999999884  46799999999999999876     566666555568999999887        


Q ss_pred             cccEEEEeecCCeEEEEecCCCC
Q 046226          392 EYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       392 ~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                       |. |++|+.||.||||.....+
T Consensus       271 -gD-Ivvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  271 -GD-IVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             -CC-EEEeccCceEEEEEecccc
Confidence             44 8889999999999987443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=2.5e-28  Score=189.26  Aligned_cols=305  Identities=19%  Similarity=0.199  Sum_probs=234.6

Q ss_pred             CCCCcccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC------c---------eeEeeccCCCccEE
Q 046226           74 SSPETSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE------F---------TECGRLKAKTSMVV  136 (434)
Q Consensus        74 ~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~------~---------~~~~~~~~~~~~v~  136 (434)
                      ..+...+.|+++.++. .+..|.+++|  .|.+.++|+...+.+|.....      +         ....+-+.|.+.|+
T Consensus        15 edd~~k~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy   93 (350)
T KOG0641|consen   15 EDDKEKKHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY   93 (350)
T ss_pred             cccccccceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE
Confidence            3456678889988775 4667999999  899999999999999875432      1         12234467899999


Q ss_pred             EEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC----CCEEE
Q 046226          137 AMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS----DDTLY  210 (434)
Q Consensus       137 ~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~  210 (434)
                      |.+|+|.  .+++|+.|.+|++..++.......                 ....++.-|.+.|..++|..+    +..|+
T Consensus        94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~-----------------g~dle~nmhdgtirdl~fld~~~s~~~il~  156 (350)
T KOG0641|consen   94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNAT-----------------GHDLEFNMHDGTIRDLAFLDDPESGGAILA  156 (350)
T ss_pred             EEEecCccCeEEecCCCceEEEEeccccccccc-----------------CcceeeeecCCceeeeEEecCCCcCceEEE
Confidence            9999997  899999999999987654322111                 011122359999999999753    45677


Q ss_pred             EEe-cCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecc---cccCe
Q 046226          211 SAS-LDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTA---KYSPV  286 (434)
Q Consensus       211 s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v  286 (434)
                      +++ .|..|++-|..+|+..+.+.+|.+.|.++--..+-++++|+.|.+|++||++...  .....-..+..   ....|
T Consensus       157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessav  234 (350)
T KOG0641|consen  157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAV  234 (350)
T ss_pred             ecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc--eeeeccCcccCCCccccee
Confidence            654 4778899999999999999999999999865545599999999999999998211  11111111111   22578


Q ss_pred             EEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCC-cee
Q 046226          287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDG-RHT  363 (434)
Q Consensus       287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~-~~~  363 (434)
                      .++++.|.|++|++|-.|....+||++.....    +.+..|...|.|+.|++.  |+++++.|..|++-|+...- ...
T Consensus       235 aav~vdpsgrll~sg~~dssc~lydirg~r~i----q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el  310 (350)
T KOG0641|consen  235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMI----QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHEL  310 (350)
T ss_pred             EEEEECCCcceeeeccCCCceEEEEeeCCcee----eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcC
Confidence            99999999999999999999999999755443    456689999999999865  99999999999999997642 113


Q ss_pred             eEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          364 MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       364 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      .+.....|.+.+..+.|+|.         .--+++.+.|.++.+|.++
T Consensus       311 ~~~vv~ehkdk~i~~rwh~~---------d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  311 PIMVVAEHKDKAIQCRWHPQ---------DFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEEeccCceEEEEecCc---------cceeeeccCcceEEEeccC
Confidence            45566789999999999998         5679999999999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-29  Score=200.53  Aligned_cols=286  Identities=16%  Similarity=0.173  Sum_probs=222.7

Q ss_pred             CcccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc
Q 046226           50 PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF  122 (434)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~  122 (434)
                      .+.+|..++.+....+++..+++.++|.+...|..     +.++.||.++|+|++.  +.+.|+||+.|.++++||+++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46789999999999999999999999988776654     7889999999999999  7899999999999999999999


Q ss_pred             eeEeeccCCCccEEEEEEeCC-EEEEEEc------CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC
Q 046226          123 TECGRLKAKTSMVVAMEVSHD-RVYAAYG------DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG  195 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~-~l~~~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (434)
                      +.+..++. ..+|..+.|+.+ .++..+.      .+.|.++|++......        ....++..+       ..+.+
T Consensus        85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~--------~s~ep~~kI-------~t~~s  148 (327)
T KOG0643|consen   85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI--------DSEEPYLKI-------PTPDS  148 (327)
T ss_pred             cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh--------cccCceEEe-------cCCcc
Confidence            99999875 567999999986 4444433      4778999987443210        011111111       14778


Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCccee
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLH  273 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~  273 (434)
                      .++.+-|.|-+.+|++|.+||.|.+||++++ +.+...+.|...|+.|.++++. ++++++.|.+-++||.+      ..
T Consensus       149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~------tl  222 (327)
T KOG0643|consen  149 KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR------TL  222 (327)
T ss_pred             ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc------ce
Confidence            9999999999999999999999999999997 4566667899999999999999 99999999999999988      33


Q ss_pred             EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc----------cccccCcccCcccceEEEEee--CCE
Q 046226          274 TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA----------QLQYGGALQGHTHAVMCLASV--ANY  341 (434)
Q Consensus       274 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~~~~~--~~~  341 (434)
                      ..+.++. ...++++.+++|-..+++.|+.....-+--......          ..+.....++|-++|.+++++  |..
T Consensus       223 ~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks  301 (327)
T KOG0643|consen  223 EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS  301 (327)
T ss_pred             eeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence            3333333 347999999999777777765433222211111111          112235678999999999986  679


Q ss_pred             EEEecCCCcEEEEeccC
Q 046226          342 VISGSADSTSRVWAREQ  358 (434)
Q Consensus       342 l~s~~~dg~i~iwd~~~  358 (434)
                      .++|++||.||+.-.+.
T Consensus       302 YsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  302 YSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccCCCCceEEEEEecc
Confidence            99999999999987654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.8e-30  Score=206.29  Aligned_cols=267  Identities=18%  Similarity=0.287  Sum_probs=207.2

Q ss_pred             ccceeeeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC----EEEEEEcCCeE
Q 046226           79 SSSYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKI  154 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i  154 (434)
                      ..++..+..+..|.++|+|++.++.++|+|+.|-+|+|||+.....+..+-.|.+.|+++.|.++    .|++|+.||.|
T Consensus        30 ~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   30 KPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             ceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            34455567788899999999999999999999999999999999999999999999999999886    69999999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  234 (434)
                      .+|+...-..+..++                      +|.+.|+.++++|.+++-++.+.|+.+++||+-.|+.-..++-
T Consensus       110 ~iw~~~~W~~~~slK----------------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L  167 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLK----------------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL  167 (362)
T ss_pred             EEEEcCCeEEeeeec----------------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc
Confidence            999987665555553                      6999999999999999999999999999999999886555543


Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          235 HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       235 ~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      .. .-+.+.|+|.| +++.++.+ .|-+|.+..      ....... .....+.++.|. ++..|++|..|+.|.+||.+
T Consensus       168 ~~-~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~------A~v~~~i-~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d  237 (362)
T KOG0294|consen  168 KN-KATLVSWSPQGDHFVVSGRN-KIDIYQLDN------ASVFREI-ENPKRILCATFL-DGSELLVGGDNEWISLKDTD  237 (362)
T ss_pred             CC-cceeeEEcCCCCEEEEEecc-EEEEEeccc------HhHhhhh-hccccceeeeec-CCceEEEecCCceEEEeccC
Confidence            22 23449999999 67776665 588887651      1111111 111345555554 56889999999999999976


Q ss_pred             cccccccccCcccCcccceEEEEee----CCEEEEecCCCcEEEEeccCCC--ceeeEEEeeccccceeEEEEee
Q 046226          314 WFSAQLQYGGALQGHTHAVMCLASV----ANYVISGSADSTSRVWAREQDG--RHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      .    ......+.+|..+|.++.+-    +.+|++++.||.|++||++...  ....+..+.. ...++|+...-
T Consensus       238 s----~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~~  307 (362)
T KOG0294|consen  238 S----DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVKL  307 (362)
T ss_pred             C----CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeehh
Confidence            4    33344677999999999864    3499999999999999998652  2234544443 55667766553

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3.9e-30  Score=240.56  Aligned_cols=297  Identities=19%  Similarity=0.219  Sum_probs=228.8

Q ss_pred             ccccEEEEEE--cCCEEEEEe--CCCeEEEecCCC------------ceeEeeccCCCccEEEEEEeCC--EEEEEEcCC
Q 046226           91 KDGQILCIAV--GNGFIYTGS--DSNVIRIWKQPE------------FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDG  152 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg  152 (434)
                      +...|.+++.  ++..++||+  .|+.++||+.+.            .+.+.....|.+.|.|+.|++|  +|++|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            4557889998  899999999  899999998642            2344566779999999999998  999999999


Q ss_pred             eEEEeecCCCCCceeeEeeeccCCCC-ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226          153 KIRVWRSTWDNGVKHVKLATIPKTGG-AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       153 ~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  231 (434)
                      .|.||+... .......    ...++ .-..-......+.+|...|.+++|+|++.+|++++.|++|.+||..+.+.+..
T Consensus        92 ~v~iW~~~~-~~~~~~f----gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen   92 LVMIWERAE-IGSGTVF----GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV  166 (942)
T ss_pred             eEEEeeecc-cCCcccc----cccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence            999998763 1110000    00000 00001111223457999999999999999999999999999999999999999


Q ss_pred             cccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccc------ccCeEEEEEecCCCEEEEEcC-
Q 046226          232 IQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK------YSPVKTLTLTLDDGLLYGGCT-  303 (434)
Q Consensus       232 ~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-  303 (434)
                      +++|...|..+.|.|-| +|++-+.|++|++|++..      ......+..+      ......+.|+|||++|++.-. 
T Consensus       167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d------w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD------WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             eecccccccceEECCccCeeeeecCCceEEEEEccc------ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence            99999999999999999 999999999999998662      2233332222      235788999999999998743 


Q ss_pred             ---CCeEEEEEcCcccccccccCcccCcccceEEEEeeC-------C------------EEEEecCCCcEEEEeccCCCc
Q 046226          304 ---DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA-------N------------YVISGSADSTSRVWAREQDGR  361 (434)
Q Consensus       304 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~------------~l~s~~~dg~i~iwd~~~~~~  361 (434)
                         -..+.|.+-    ..+.....+.||..++.++.|++       +            .+|+|+.|++|-||.....+.
T Consensus       241 n~~~~~~~IieR----~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP  316 (942)
T KOG0973|consen  241 NGGKSTIAIIER----GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP  316 (942)
T ss_pred             cCCcceeEEEec----CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence               346778773    44555567789999999999851       1            678999999999999866532


Q ss_pred             eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          362 HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       362 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                        .+....-....|.++.|+|+         |..|..+|.||+|.+..++..
T Consensus       317 --l~vi~~lf~~SI~DmsWspd---------G~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  317 --LFVIHNLFNKSIVDMSWSPD---------GFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             --hhhhhhhhcCceeeeeEcCC---------CCeEEEEecCCeEEEEEcchH
Confidence              22222334668999999999         899999999999999999864

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.9e-29  Score=228.49  Aligned_cols=260  Identities=17%  Similarity=0.223  Sum_probs=186.7

Q ss_pred             EEEcCCEEEEEeCCCeEEEecCCCceeE-------------eeccCCCccEEEEEEeC-C--EEEEEEcCCeEEEeecCC
Q 046226           98 IAVGNGFIYTGSDSNVIRIWKQPEFTEC-------------GRLKAKTSMVVAMEVSH-D--RVYAAYGDGKIRVWRSTW  161 (434)
Q Consensus        98 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~l~~~~-~--~l~~~s~dg~i~vwd~~~  161 (434)
                      .++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| +  .|++|+.|++|++||+..
T Consensus        28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~  107 (493)
T PTZ00421         28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE  107 (493)
T ss_pred             ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence            3345555666666666666664333222             13678999999999998 4  899999999999999875


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN  240 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  240 (434)
                      .......        ...+.       .+.+|...|.+++|+|++ ++|++|+.|+.|++||+++++.+..+..|...|.
T Consensus       108 ~~~~~~~--------~~~l~-------~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~  172 (493)
T PTZ00421        108 EGLTQNI--------SDPIV-------HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT  172 (493)
T ss_pred             Ccccccc--------CcceE-------EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence            4321100        00111       223799999999999985 6899999999999999999999999999999999


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccC-eEEEEEecCCCEEEEEc----CCCeEEEEEcCc
Q 046226          241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSP-VKTLTLTLDDGLLYGGC----TDGYIHYWHKGW  314 (434)
Q Consensus       241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~  314 (434)
                      +++|++++ +|++++.|+.|++||++      .......+..|... ...+.|.+++..+++++    .|+.|++||++.
T Consensus       173 sla~spdG~lLatgs~Dg~IrIwD~r------sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        173 SLEWNLDGSLLCTTSKDKKLNIIDPR------DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             EEEEECCCCEEEEecCCCEEEEEECC------CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            99999999 99999999999999998      22344455666554 45677888877777654    479999999975


Q ss_pred             ccccccccCcccCc-ccceEEEEe--eCCEEEEec-CCCcEEEEeccCCCceeeEEEee-ccccceeEEEEeecc
Q 046226          315 FSAQLQYGGALQGH-THAVMCLAS--VANYVISGS-ADSTSRVWAREQDGRHTMLAVLV-GHRGPIRCAIAFLGR  384 (434)
Q Consensus       315 ~~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~  384 (434)
                      .......   ...+ ...+....+  ++++|++++ .|+.|++||+.++.   .+.... .+..++..++|.|..
T Consensus       247 ~~~p~~~---~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        247 MASPYST---VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCCceeE---eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCCCCCcceEecccc
Confidence            4433221   1112 223333334  577888777 59999999999873   333332 355678889999873

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=2.5e-29  Score=216.56  Aligned_cols=303  Identities=14%  Similarity=0.265  Sum_probs=226.1

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCcee----Eeecc-CCCccEEEEEEeCC--EEEEEEcCC
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTE----CGRLK-AKTSMVVAMEVSHD--RVYAAYGDG  152 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~----~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg  152 (434)
                      ..+-..+.+|+..|.++++  .|-.|++|+.|.+|++||+.....    ...+. .....|.+++|++.  .|++.+...
T Consensus       157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence            4445668899999999999  799999999999999999865321    22222 23457899999985  888889999


Q ss_pred             eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCe-eEE
Q 046226          153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSK-CIE  230 (434)
Q Consensus       153 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~-~~~  230 (434)
                      ..+|+|-.........      .....++++.    ...+|...++|.+|+|.. ..|++++.||++++||++..+ .++
T Consensus       237 qakl~DRdG~~~~e~~------KGDQYI~Dm~----nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q  306 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFS------KGDQYIRDMY----NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ  306 (641)
T ss_pred             ceeEEccCCceeeeee------ccchhhhhhh----ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence            9999996644333332      2222233322    235899999999999975 568899999999999997643 333


Q ss_pred             Ecc-----cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc--CeEEEEEecCCCEEEEEc
Q 046226          231 TIQ-----AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS--PVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       231 ~~~-----~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~  302 (434)
                      .++     +..-+++.++|++++ +|++|..||.|.+||..   .............|..  .|++|.|+++|++|++-+
T Consensus       307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~---~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKG---SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecC---CcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence            332     234478999999999 99999999999999976   2223334445566766  899999999999999999


Q ss_pred             CCCeEEEEEcCcccccccccCccc-CcccceEEEEeeCCEEEEecC------CCcEEEEeccCCCceeeEEEeeccccce
Q 046226          303 TDGYIHYWHKGWFSAQLQYGGALQ-GHTHAVMCLASVANYVISGSA------DSTSRVWAREQDGRHTMLAVLVGHRGPI  375 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~v  375 (434)
                      .|+.+++||++..+..+....-+. .....=.|++++.++|++|..      .|.+.+||..+-   ..++.+.-....|
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSv  460 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASV  460 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCCCceE
Confidence            999999999987765544322221 222223455666778888864      568999998876   6777777778889


Q ss_pred             eEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          376 RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      ..+.|+|.         -+.|..|+.||+++++=
T Consensus       461 v~~~Whpk---------LNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  461 VRCLWHPK---------LNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EEEeecch---------hhheeeecCCCceEEEE
Confidence            99999998         67788888899999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=6.8e-31  Score=206.29  Aligned_cols=278  Identities=17%  Similarity=0.264  Sum_probs=226.2

Q ss_pred             CcccccCCCCCCCC---CCCCCccCCCCCCCc-----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecC
Q 046226           50 PISLHTSPLSSPRH---PFNPTAAAGSSSPET-----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQ  119 (434)
Q Consensus        50 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~  119 (434)
                      .-.+|..++-...+   .+++-.+.++++|..     -.+..=|.+|.+|.++|+....  +....|+++.|=+-+|||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            34566666644333   245556666766644     3455669999999999999999  5567788899999999999


Q ss_pred             CCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCe
Q 046226          120 PEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPI  197 (434)
Q Consensus       120 ~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  197 (434)
                      -++..+..+. |..-|.+++|+.|  +|++|+.+..++|||++..+...                     .++.+|.+.|
T Consensus        89 ~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App---------------------~E~~ghtg~I  146 (334)
T KOG0278|consen   89 VTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP---------------------KEISGHTGGI  146 (334)
T ss_pred             hhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc---------------------hhhcCCCCcc
Confidence            9999988876 7888999999987  89999999999999987554321                     1234799999


Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226          198 TSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       198 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  277 (434)
                      ..+.|....+.|++...|++|++||.++++.++++. ...+|+++.++++|.+++....+.|.+||..      ....+.
T Consensus       147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdak------sf~~lK  219 (334)
T KOG0278|consen  147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAK------SFGLLK  219 (334)
T ss_pred             eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccc------ccccee
Confidence            999999999999999999999999999999999987 5678999999999988888888999999987      222332


Q ss_pred             EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEe
Q 046226          278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWA  355 (434)
Q Consensus       278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd  355 (434)
                      .+. ....|.+..++|+...+++|++|..++.||..+......+   .++|.++|.|+.|+  |...++|++||+|++|.
T Consensus       220 s~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  220 SYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             ecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            222 2356889999999999999999999999999776554432   46999999999986  66999999999999999


Q ss_pred             ccCCC
Q 046226          356 REQDG  360 (434)
Q Consensus       356 ~~~~~  360 (434)
                      +..++
T Consensus       296 t~~~~  300 (334)
T KOG0278|consen  296 TTPGK  300 (334)
T ss_pred             ecCCC
Confidence            87763

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4e-29  Score=214.13  Aligned_cols=276  Identities=16%  Similarity=0.269  Sum_probs=220.3

Q ss_pred             cccEEEEEEc---C-CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc
Q 046226           92 DGQILCIAVG---N-GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV  165 (434)
Q Consensus        92 ~~~v~~~~~~---~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~  165 (434)
                      .++|.+++|.   . ++.+|++  -.|.||+..+......+......|.++.|..|  .+++|...|.|+|+|..+...+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL  103 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL  103 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence            4568888882   2 4444444  47999999888888878778889999999977  6666677899999996654334


Q ss_pred             eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEE
Q 046226          166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVV  244 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  244 (434)
                      +.+                      .+|..+|..+.|+|.+ ..|++|++|+.+++||+.+......+.+|++.|.|.+|
T Consensus       104 R~~----------------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~  161 (487)
T KOG0310|consen  104 RQL----------------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI  161 (487)
T ss_pred             HHH----------------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence            443                      3799999999999965 56778888999999999998877789999999999999


Q ss_pred             cCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccccc
Q 046226          245 ADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYG  322 (434)
Q Consensus       245 ~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  322 (434)
                      +|..  .+++|+.||.|++||++...     ..+.. ..|..+|.++.+-|.|..+++++ ...|++||+..+....   
T Consensus       162 ~~~~~hivvtGsYDg~vrl~DtR~~~-----~~v~e-lnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll---  231 (487)
T KOG0310|consen  162 SPANDHIVVTGSYDGKVRLWDTRSLT-----SRVVE-LNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLL---  231 (487)
T ss_pred             ccCCCeEEEecCCCceEEEEEeccCC-----ceeEE-ecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceeh---
Confidence            9876  89999999999999998221     22222 35888999999999999999886 4579999996443332   


Q ss_pred             CcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226          323 GALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       323 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                      .....|...|+|+.+.  +..|++|+-|+.+++||+.+-   +.+..+. -.++|.+++.+|+         ++.++.|-
T Consensus       232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~d---------d~t~viGm  298 (487)
T KOG0310|consen  232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPD---------DQTVVIGM  298 (487)
T ss_pred             hhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCC---------CceEEEec
Confidence            2344599999999986  479999999999999997664   5665553 4789999999998         89999999


Q ss_pred             cCCeEEEEecCCCC
Q 046226          401 LDGVLKMWRVTRPK  414 (434)
Q Consensus       401 ~Dg~v~iw~~~~~~  414 (434)
                      .||.+.+=+....+
T Consensus       299 snGlv~~rr~~~k~  312 (487)
T KOG0310|consen  299 SNGLVSIRRREVKK  312 (487)
T ss_pred             ccceeeeehhhccc
Confidence            99999887655443

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=3.1e-28  Score=225.44  Aligned_cols=252  Identities=15%  Similarity=0.172  Sum_probs=187.6

Q ss_pred             EeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCC-ceeeEeeeccCCCCceeEE
Q 046226          108 GSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNG-VKHVKLATIPKTGGAVRNL  183 (434)
Q Consensus       108 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~  183 (434)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+   .|++|+.|+.|++||+..... ....        ...+.  
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--------~~p~~--  119 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--------KDPQC--  119 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------ccceE--
Confidence            677899999998887888889999999999999984   899999999999999975432 1100        00011  


Q ss_pred             EeccccccCcCCCeEEEEEecCCCE-EEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEE
Q 046226          184 IVGKDKMMKHMGPITSIAINVSDDT-LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRV  261 (434)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~i  261 (434)
                           .+.+|...|.+++|+|++.. |++++.|++|++||+++++.+..+. |...|.+++|+++| +|++++.|+.|++
T Consensus       120 -----~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrI  193 (568)
T PTZ00420        120 -----ILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHI  193 (568)
T ss_pred             -----EeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEE
Confidence                 12369999999999999876 4688999999999999998777775 56789999999999 8888999999999


Q ss_pred             EecccccCcceeEEEEEecccccCeEEE-----EEecCCCEEEEEcCCC----eEEEEEcCcccccccccCcccCcccce
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTL-----TLTLDDGLLYGGCTDG----YIHYWHKGWFSAQLQYGGALQGHTHAV  332 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~v  332 (434)
                      ||++      .......+.+|.+.+...     .|++++.+|++++.|+    .|+|||++........ ..+..+...+
T Consensus       194 wD~R------sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-~~ld~~~~~L  266 (568)
T PTZ00420        194 IDPR------KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT-MSIDNASAPL  266 (568)
T ss_pred             EECC------CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE-EEecCCccce
Confidence            9998      233445667777654433     3457888999887764    7999999753332221 1222333333


Q ss_pred             EEEE-e-eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecc
Q 046226          333 MCLA-S-VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGR  384 (434)
Q Consensus       333 ~~~~-~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  384 (434)
                      ..+. . ++.++++|+.|+.|++|++..+ ....+..+. +..++.+++|.|.+
T Consensus       267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~-~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        267 IPHYDESTGLIYLIGKGDGNCRYYQHSLG-SIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEeeeCCCCCEEEEEECCCeEEEEEccCC-cEEeecccc-cCCCccceEEcccc
Confidence            2221 1 3678999999999999999875 233444443 67788999999985

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=3.3e-29  Score=201.47  Aligned_cols=286  Identities=17%  Similarity=0.227  Sum_probs=222.4

Q ss_pred             eeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCce------------eE---eeccCCCccEEEEEEeCC---EEEE
Q 046226           89 LKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFT------------EC---GRLKAKTSMVVAMEVSHD---RVYA  147 (434)
Q Consensus        89 ~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~------------~~---~~~~~~~~~v~~l~~~~~---~l~~  147 (434)
                      ..|.|.|.++..   .|+++++|+.||.|.+||+++..            ++   ..-.+|.-.|.++.|.|-   .+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            448999999999   79999999999999999997532            10   112357789999999883   6777


Q ss_pred             EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---CCEEEEEecCCcEEEEEcC
Q 046226          148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---DDTLYSASLDKTIKVWRIR  224 (434)
Q Consensus       148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~  224 (434)
                      ++.|.+++|||..+-+....++                       ..+.|.+-+++|-   ..++++|..|-.|++.|+.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-----------------------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-----------------------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ccccceEEEeecccceeeEEee-----------------------cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            8889999999998776666553                       5566777777763   4578889999999999999


Q ss_pred             CCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccC---------cceeEEEEEecccccCeEEEEEec
Q 046226          225 DSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSE---------NQLHTLILTLTAKYSPVKTLTLTL  293 (434)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~  293 (434)
                      +|.+-+.+.+|.+.|.++.|+|..  .|++|+.||.|++||++...+         ............|.+.+..++|..
T Consensus       177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence            999999999999999999999988  899999999999999983211         011122234567888999999999


Q ss_pred             CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce-EE--E-EeeCCEEEEecCCCcEEEEeccCCCceeeEEEee
Q 046226          294 DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV-MC--L-ASVANYVISGSADSTSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       294 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~--~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  369 (434)
                      ++.++++.+.|..+++|+...+.......... .|...+ ..  + ..+...++---.++.+.++++-.+   ..+..+.
T Consensus       257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sg---s~ir~l~  332 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNMESGRNTLREFGPI-IHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEG---SFVRRLS  332 (397)
T ss_pred             cchhhhhccCccceEEeecccCcccccccccc-cccccccceEEEeecccceEEEEecCCeEEEEEccCc---eEEEeee
Confidence            99999999999999999987665544332221 111110 11  1 122334444445689999999888   7888899


Q ss_pred             ccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       370 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                      .|-..|.|.++-|+         -+...+|..|+.|..|-.
T Consensus       333 ~h~k~i~c~~~~~~---------fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  333 THLKRINCAAYRPD---------FEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             cccceeeEEeecCc---------hhhhhccccCCccccccc
Confidence            99889999999888         778999999999999987

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=217.40  Aligned_cols=290  Identities=16%  Similarity=0.258  Sum_probs=217.2

Q ss_pred             CccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccCCCC-CCCcccceeeeEEEeeccccEEEEEE--
Q 046226           24 STFLRSISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSS-SPETSSSYRCISSVLKKDGQILCIAV--  100 (434)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~--  100 (434)
                      .+||++            ...+...++...-++-..+|.+|.+.....+.. ..-...+...+.++......|.+++|  
T Consensus        11 ~~~w~~------------~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~   78 (487)
T KOG0310|consen   11 IRYWRQ------------ETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS   78 (487)
T ss_pred             chhhhh------------hcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeec
Confidence            567777            333445454455555556666655543222211 00111222233445556788999999  


Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      ||.+||+|...|.|+|||+.+...+..+++|+.+|..+.|+|.   .+++|+.|+.+++||+.+...  ...        
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~--------  148 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAE--------  148 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEE--------
Confidence            8999999999999999998887788889999999999999995   788889999999999987653  111        


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEEEEEcCCC-eEEEEe
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVVADDG-VLYSAS  254 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~s~~  254 (434)
                                  +.+|.+.|.|.+|+|... .+++|+.||.|++||++.. ..+.++. |..+|..+.+-|.| .+++++
T Consensus       149 ------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg  215 (487)
T KOG0310|consen  149 ------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG  215 (487)
T ss_pred             ------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC
Confidence                        137999999999999654 7889999999999999887 5666665 99999999999998 666665


Q ss_pred             CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEE
Q 046226          255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC  334 (434)
Q Consensus       255 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  334 (434)
                      . ..|++||+.     .-.+.......|...|+|+++..++..|++|+-|+.|++||+...+.....     .-.++|.+
T Consensus       216 G-n~vkVWDl~-----~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-----~~~~pvLs  284 (487)
T KOG0310|consen  216 G-NSVKVWDLT-----TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-----KYPGPVLS  284 (487)
T ss_pred             C-CeEEEEEec-----CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-----ecccceee
Confidence            4 579999987     223344455559999999999999999999999999999997644433322     34468888


Q ss_pred             EEee--CCEEEEecCCCcEEEEeccCC
Q 046226          335 LASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       335 ~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ++.+  ++.++.|-.||.+.+=+....
T Consensus       285 iavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  285 IAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             EEecCCCceEEEecccceeeeehhhcc
Confidence            8776  479999999998887755443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.7e-30  Score=211.59  Aligned_cols=272  Identities=18%  Similarity=0.261  Sum_probs=232.4

Q ss_pred             cccccCCCCCCCCCCCCCccCCCCCCCcccceeee-------------EEEeeccccEEEEEE--cCCEEEEEeCCCeEE
Q 046226           51 ISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCI-------------SSVLKKDGQILCIAV--GNGFIYTGSDSNVIR  115 (434)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~  115 (434)
                      -.+.++-+.+++|++++..+.+++.|+.+..|+-.             ..|.-|+++|.|++|  |...||+|+.||.|+
T Consensus       209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence            34566778899999999999999999887776653             346778999999999  899999999999999


Q ss_pred             EecCCCceeEeecc-CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccC
Q 046226          116 IWKQPEFTECGRLK-AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK  192 (434)
Q Consensus       116 iwd~~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (434)
                      ||.+.+|.++.++. +|+..|+|+.|+.|  .+++++.|.++++.-+..++..+.++                      +
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr----------------------G  346 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR----------------------G  346 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc----------------------C
Confidence            99999999999987 89999999999987  89999999999999999888887774                      8


Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcCCC--eEEEEeCCCeEEEEeccccc
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA--HSEPINALVVADDG--VLYSASDDATVRVWRRYFYS  268 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~  268 (434)
                      |...|+...|.++|..+++++.||+|++|+..+.+|+.+++.  ...+|+.+...|.+  .++.|...++|.+-++.   
T Consensus       347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q---  423 (508)
T KOG0275|consen  347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ---  423 (508)
T ss_pred             ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc---
Confidence            999999999999999999999999999999999999999875  34578888888877  89999999999999875   


Q ss_pred             CcceeEEEEEe---cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEE
Q 046226          269 ENQLHTLILTL---TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVI  343 (434)
Q Consensus       269 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  343 (434)
                          .+.+..+   ....+...+.+++|.|.++++.++|+.++.|.+..+    .+...+.-|...+..++-.  .+.++
T Consensus       424 ----GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG----~LE~tl~VhEkdvIGl~HHPHqNllA  495 (508)
T KOG0275|consen  424 ----GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG----KLERTLPVHEKDVIGLTHHPHQNLLA  495 (508)
T ss_pred             ----ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC----ceeeeeecccccccccccCcccchhh
Confidence                2233332   233456677889999999999999999999987533    3334566788888888754  67999


Q ss_pred             EecCCCcEEEEe
Q 046226          344 SGSADSTSRVWA  355 (434)
Q Consensus       344 s~~~dg~i~iwd  355 (434)
                      +-++||.+++|.
T Consensus       496 sYsEDgllKLWk  507 (508)
T KOG0275|consen  496 SYSEDGLLKLWK  507 (508)
T ss_pred             hhcccchhhhcC
Confidence            999999999994

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=200.58  Aligned_cols=303  Identities=18%  Similarity=0.191  Sum_probs=219.1

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEe----eccCCCccEEEEEEeCC---EEEEEEcCCeEE
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECG----RLKAKTSMVVAMEVSHD---RVYAAYGDGKIR  155 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~  155 (434)
                      +.+|++|.+.|++++|  +|++|+|++.|++|+||++.+.....    +....-+.-+.+.|.||   .++.+-....++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            4568999999999999  99999999999999999997743211    11112234678899998   455556677899


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  235 (434)
                      +|.+...+. ........+.         .....-..|.-.+..+-....+.+|++++.|..|.+|++. |+.+..+...
T Consensus       159 vyk~~K~~d-G~~~~~~v~~---------D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn  227 (420)
T KOG2096|consen  159 VYKLVKKTD-GSGSHHFVHI---------DNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN  227 (420)
T ss_pred             EEEeeeccc-CCCCcccccc---------cccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence            997653322 0000000000         0000112477778888888889999999999999999998 9999999888


Q ss_pred             ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce--eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226          236 SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL--HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK  312 (434)
Q Consensus       236 ~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  312 (434)
                      ...-+..+++|+| ++++++..-.|++|.+-.......  ......+.+|...|..++|+++...+++.+.||+++|||.
T Consensus       228 q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  228 QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence            8888889999999 888999999999998764443332  2335678899999999999999999999999999999997


Q ss_pred             CcccccccccCc-------cc--CcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          313 GWFSAQLQYGGA-------LQ--GHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       313 ~~~~~~~~~~~~-------~~--~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      +-.....+-...       +.  +....-..++++|+.|+... ...+++|..+.++...++.  ..|.+.|.+++|+++
T Consensus       308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e--~~h~~~Is~is~~~~  384 (420)
T KOG2096|consen  308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE--DIHSTTISSISYSSD  384 (420)
T ss_pred             cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH--HhhcCceeeEEecCC
Confidence            643222111111       11  11112345566677776654 5689999999875443333  368999999999999


Q ss_pred             ccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          384 RFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       384 ~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                               |++++|+| |..+++..-.
T Consensus       385 ---------g~~~atcG-dr~vrv~~nt  402 (420)
T KOG2096|consen  385 ---------GKYIATCG-DRYVRVIRNT  402 (420)
T ss_pred             ---------CcEEeeec-ceeeeeecCC
Confidence                     99999997 6788887633

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.3e-30  Score=227.15  Aligned_cols=271  Identities=18%  Similarity=0.342  Sum_probs=218.2

Q ss_pred             cCCEEEEEeCCCeEEEecCCCce------eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeee
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFT------ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLAT  172 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~  172 (434)
                      .+++|+|||.||.|++|++....      ....++.|...|+++....+  .|++++.|-+|++|+...+......    
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s----  111 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS----  111 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh----
Confidence            67899999999999999875422      36778899999999988765  8999999999999998765311111    


Q ss_pred             ccCCCCceeEEEeccccccCcCCCeEEEEE-ecCCCEEEEEecCCcEEEEEcCCCe--eEE--------Ecc-cCccCeE
Q 046226          173 IPKTGGAVRNLIVGKDKMMKHMGPITSIAI-NVSDDTLYSASLDKTIKVWRIRDSK--CIE--------TIQ-AHSEPIN  240 (434)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~--~~~--------~~~-~~~~~v~  240 (434)
                                      .+..|.+.|.|+++ -++..++++|+-|+.|.+||++++.  .+.        .+. ++...|+
T Consensus       112 ----------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY  175 (735)
T KOG0308|consen  112 ----------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY  175 (735)
T ss_pred             ----------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence                            12369999999999 7788899999999999999999772  222        223 6888999


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226          241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  319 (434)
                      +++.++.+ .+++|+..+.+++||.+      ....+..+.+|...|..+..++||..+++++.||+|++||+...    
T Consensus       176 SLA~N~t~t~ivsGgtek~lr~wDpr------t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----  245 (735)
T KOG0308|consen  176 SLAMNQTGTIIVSGGTEKDLRLWDPR------TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----  245 (735)
T ss_pred             eeecCCcceEEEecCcccceEEeccc------cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc----
Confidence            99999999 99999999999999988      55566777899999999999999999999999999999998643    


Q ss_pred             cccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEE
Q 046226          320 QYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC  397 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~  397 (434)
                      ....++..|...|+++..+..  ++++|+.||.|..=|+++......+.   ....+|..+.....         .+-+.
T Consensus       246 rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic---k~daPv~~l~~~~~---------~~~~W  313 (735)
T KOG0308|consen  246 RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC---KEDAPVLKLHLHEH---------DNSVW  313 (735)
T ss_pred             ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee---cCCCchhhhhhccc---------cCCce
Confidence            344557789989999988765  89999999999999999863222222   23556666766644         33457


Q ss_pred             EeecCCeEEEEecCCC
Q 046226          398 TGSLDGVLKMWRVTRP  413 (434)
Q Consensus       398 s~~~Dg~v~iw~~~~~  413 (434)
                      ++..|+.|+-|.....
T Consensus       314 vtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  314 VTTTDSSIKRWKLEPD  329 (735)
T ss_pred             eeeccccceecCCccc
Confidence            7888999999987643

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3e-30  Score=216.42  Aligned_cols=284  Identities=19%  Similarity=0.238  Sum_probs=230.8

Q ss_pred             CCCCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-------eEEEeeccccEEEEEE--cCCEEEEEeCCC
Q 046226           42 YSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-------ISSVLKKDGQILCIAV--GNGFIYTGSDSN  112 (434)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg  112 (434)
                      .-|.+....+..|...+....+-++...+++++.|..++.|+.       +.+|.|-.+.|+.+.|  ++..+++++.|+
T Consensus       162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~  241 (459)
T KOG0288|consen  162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDK  241 (459)
T ss_pred             ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCC
Confidence            3455666778888899999999999999999999999888876       4567888899999999  789999999999


Q ss_pred             eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226          113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM  190 (434)
Q Consensus       113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
                      .+++|++...+...++.+|.+.|+++.|...  .+++|+.|.+|++||+....+.+.+.                     
T Consensus       242 ~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------------------  300 (459)
T KOG0288|consen  242 NLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------------------  300 (459)
T ss_pred             ceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------------------
Confidence            9999999999999999999999999999775  58999999999999998765555442                     


Q ss_pred             cCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccC
Q 046226          191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSE  269 (434)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~  269 (434)
                        ....+.+|+.+  ...+++|-.|+.|++||.++..+......+. .|+++..+.++ .+.+++.|.++.+.|++...-
T Consensus       301 --~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI  375 (459)
T KOG0288|consen  301 --PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI  375 (459)
T ss_pred             --ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence              33445666654  5678899999999999999999998888665 99999999999 888899999999999983222


Q ss_pred             cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecC
Q 046226          270 NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSA  347 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~  347 (434)
                      ...........+  ...+.+.|+|++.|+++|+.||.|+||++.+.+.....  ........|++++|+  |..|++++.
T Consensus       376 ~~~~sA~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l--~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  376 RQTFSAEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL--SLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             EEEeeccccccc--cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe--ccCCCCcceEEEEEcCCCchhhcccC
Confidence            111111111222  34888999999999999999999999998765544332  232333379999997  779999999


Q ss_pred             CCcEEEEe
Q 046226          348 DSTSRVWA  355 (434)
Q Consensus       348 dg~i~iwd  355 (434)
                      ++.+.+|.
T Consensus       452 ~~~v~lW~  459 (459)
T KOG0288|consen  452 QKAVTLWT  459 (459)
T ss_pred             CcceEecC
Confidence            99999993

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.1e-29  Score=214.20  Aligned_cols=251  Identities=18%  Similarity=0.255  Sum_probs=204.7

Q ss_pred             EeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCce----------eEeeccCCCccEEEEEEeCC---EEEEEEcC
Q 046226           88 VLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFT----------ECGRLKAKTSMVVAMEVSHD---RVYAAYGD  151 (434)
Q Consensus        88 ~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~l~~~~~---~l~~~s~d  151 (434)
                      ...|.+.|+.+.+   +..++|+++..+.|.|||..+..          +-.++.+|.+.-++|.|++.   .|++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            3459999999999   78899999999999999985421          22367889888888999985   89999999


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcC--CCee
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIR--DSKC  228 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~--~~~~  228 (434)
                      +.|++||+.........               ......+.+|...|..++|++- ..+|++++.|+.+.|||++  +.++
T Consensus       200 ~~i~lwdi~~~~~~~~~---------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~  264 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKV---------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP  264 (422)
T ss_pred             CcEEEEeccccccCCcc---------------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence            99999999755432100               0111123479999999999985 5678899999999999999  5667


Q ss_pred             EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCC
Q 046226          229 IETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDG  305 (434)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg  305 (434)
                      .....+|.+.|+|++|+|-+  .|++|+.|++|++||+|     ........+.+|...|..+.|+|. ...|++++.|+
T Consensus       265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR-----nL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~  339 (422)
T KOG0264|consen  265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR-----NLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDR  339 (422)
T ss_pred             cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeech-----hcccCceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence            77888999999999999977  89999999999999999     444577889999999999999995 56889999999


Q ss_pred             eEEEEEcCccccc----------ccccCcccCcccceEEEEeeCC---EEEEecCCCcEEEEeccC
Q 046226          306 YIHYWHKGWFSAQ----------LQYGGALQGHTHAVMCLASVAN---YVISGSADSTSRVWAREQ  358 (434)
Q Consensus       306 ~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~  358 (434)
                      .+.+||+......          .++...-.||...|..++|+++   .+++.++|+.+.||++..
T Consensus       340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9999998754332          2233455699999999999865   899999999999998864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.6e-29  Score=212.17  Aligned_cols=262  Identities=19%  Similarity=0.322  Sum_probs=212.1

Q ss_pred             EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeee-c-cCCCCceeEEEeccccccCcCCCeEEE
Q 046226          125 CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLAT-I-PKTGGAVRNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       125 ~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (434)
                      ...+..|.-+|.+++++++  +.++++.||+|.-|++.++.....+--.. . ...+.....     .. .+|...+.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~-----~r-~~h~keil~~  208 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKE-----SR-KGHVKEILTL  208 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCc-----cc-ccccceeEEE
Confidence            4556779999999999998  99999999999999998887553321110 0 001111000     00 2699999999


Q ss_pred             EEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226          201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       201 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      +.++|+++|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... .+++++.|+.|++|++.      ....+.++
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~------~~s~vetl  282 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID------QLSYVETL  282 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh------HhHHHHHH
Confidence            999999999999999999999999999999999999999999998766 99999999999999987      45566778


Q ss_pred             cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe-eCCEEEEecCCCcEEEEeccC
Q 046226          280 TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-VANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      .+|...|..|....-++.+-+|+.|+++++|++......     .+.++.+.+-|++| +..++++|+.||.|.+|++..
T Consensus       283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-----ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-----IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             hCCccceeeechhcccceEEeccccceeEEEecccccee-----eeeCCCCCeeeEEEecccceeeccCCceEEEeeecc
Confidence            899999999998888888888999999999998432222     45588889999988 577999999999999999987


Q ss_pred             CCceeeEEEe-ecc-----------ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          359 DGRHTMLAVL-VGH-----------RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       359 ~~~~~~~~~~-~~h-----------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      .+   ++... .+|           ..+|++++..|.         ..++++|+.+|.|++|.+..+-.
T Consensus       358 Kk---plf~~~~AHgv~~~~~~~~~~~Witsla~i~~---------sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  358 KK---PLFTSRLAHGVIPELDPVNGNFWITSLAVIPG---------SDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             cC---ceeEeeccccccCCccccccccceeeeEeccc---------CceEEecCCCCceEEEEecCCcc
Confidence            63   33221 122           237999999998         89999999999999999998844

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=6.2e-28  Score=222.58  Aligned_cols=242  Identities=19%  Similarity=0.248  Sum_probs=182.7

Q ss_pred             EEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc-------eeEeeccCCCccEEEEEEeCC---EEEEEEcCCe
Q 046226           87 SVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF-------TECGRLKAKTSMVVAMEVSHD---RVYAAYGDGK  153 (434)
Q Consensus        87 ~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~  153 (434)
                      .+.+|.+.|++++|   ++++|++|+.|++|++||+.+.       ..+..+.+|...|.+++|+|+   .|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            47889999999999   5789999999999999999764       346678899999999999984   7899999999


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  233 (434)
                      |++||+..+.....+                      .+|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.
T Consensus       150 VrIWDl~tg~~~~~l----------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~  207 (493)
T PTZ00421        150 VNVWDVERGKAVEVI----------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE  207 (493)
T ss_pred             EEEEECCCCeEEEEE----------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            999999876543333                      2589999999999999999999999999999999999999998


Q ss_pred             cCccC-eEEEEEcCCC-eEEEEe----CCCeEEEEecccccCcceeEEEEEec-ccccCeEEEEEecCCCEEEEEc-CCC
Q 046226          234 AHSEP-INALVVADDG-VLYSAS----DDATVRVWRRYFYSENQLHTLILTLT-AKYSPVKTLTLTLDDGLLYGGC-TDG  305 (434)
Q Consensus       234 ~~~~~-v~~~~~~~~~-~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg  305 (434)
                      +|.+. +..+.|.+++ .+++++    .|+.|++||++...     ....... .....+....|++++++|++++ .|+
T Consensus       208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-----~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg  282 (493)
T PTZ00421        208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-----SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG  282 (493)
T ss_pred             cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-----CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence            88765 3467788776 666554    47999999998222     1112222 2234556667899999998887 599


Q ss_pred             eEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226          306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      .|++||+.........  . ..+..++.++++.+++.+=...--..|+|.+..
T Consensus       283 ~Iriwdl~~~~~~~~~--~-~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~  332 (493)
T PTZ00421        283 NIRCFELMNERLTFCS--S-YSSVEPHKGLCMMPKWSLDTRKCEIARFYALTY  332 (493)
T ss_pred             eEEEEEeeCCceEEEe--e-ccCCCCCcceEecccccccccceeeeEEEEecC
Confidence            9999999754422211  1 123445666766665544444444557777654

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1e-27  Score=222.06  Aligned_cols=246  Identities=13%  Similarity=0.179  Sum_probs=180.8

Q ss_pred             eeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCce--------eEeeccCCCccEEEEEEeCC---EEEEEE
Q 046226           84 CISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFT--------ECGRLKAKTSMVVAMEVSHD---RVYAAY  149 (434)
Q Consensus        84 ~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~l~~~~~---~l~~~s  149 (434)
                      .+..+.+|.+.|.+++|   ++++|++|+.||+|+|||+.++.        .+..+.+|...|.+++|+|+   .+++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            57788999999999999   37899999999999999997632        33467889999999999996   457889


Q ss_pred             cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE
Q 046226          150 GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI  229 (434)
Q Consensus       150 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  229 (434)
                      .|+.|++||+..+.....+                       .|...|.+++|+++|.+|++++.|+.|++||+++++.+
T Consensus       146 ~DgtIrIWDl~tg~~~~~i-----------------------~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQI-----------------------NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA  202 (568)
T ss_pred             CCCeEEEEECCCCcEEEEE-----------------------ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence            9999999999876544333                       25678999999999999999999999999999999999


Q ss_pred             EEcccCccCeEEEE-----EcCCC-eEEEEeCCC----eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEE
Q 046226          230 ETIQAHSEPINALV-----VADDG-VLYSASDDA----TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLY  299 (434)
Q Consensus       230 ~~~~~~~~~v~~~~-----~~~~~-~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  299 (434)
                      ..+.+|.+.+.+..     |++++ +|++++.|+    .|++||++....   ......+..+.+.+......+++.+++
T Consensus       203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~---pl~~~~ld~~~~~L~p~~D~~tg~l~l  279 (568)
T PTZ00420        203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS---ALVTMSIDNASAPLIPHYDESTGLIYL  279 (568)
T ss_pred             EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC---ceEEEEecCCccceEEeeeCCCCCEEE
Confidence            99999987654433     34666 888877764    799999982211   111122333333333343445688999


Q ss_pred             EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226          300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       300 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      +|..|+.|++|++....  ......+ .+..++.+++|.++..+=...--..|+|.+..
T Consensus       280 sGkGD~tIr~~e~~~~~--~~~l~~~-~s~~p~~g~~f~Pkr~~dv~~cEi~R~~kl~~  335 (568)
T PTZ00420        280 IGKGDGNCRYYQHSLGS--IRKVNEY-KSCSPFRSFGFLPKQICDVYKCEIGRVYKNEN  335 (568)
T ss_pred             EEECCCeEEEEEccCCc--EEeeccc-ccCCCccceEEccccccCchhhhHhHHhhhcC
Confidence            99999999999986432  2222222 25567778888776554443334556666654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=4e-28  Score=196.59  Aligned_cols=269  Identities=15%  Similarity=0.128  Sum_probs=211.9

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCcee
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      ..+.|..+.|  .++.|++++.||.+++||+....+...++ |..++.+++|.++ .+++|+.||.|+.+|+.+++....
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i   90 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQI   90 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCcceee
Confidence            3677999999  57778888899999999998876555554 8899999999987 899999999999999987755433


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD  247 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  247 (434)
                      -                       .|..+|.||.+.+....+++|+.|++|++||.+....+..+. ....|.++....+
T Consensus        91 g-----------------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~  146 (323)
T KOG1036|consen   91 G-----------------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGN  146 (323)
T ss_pred             c-----------------------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccCC
Confidence            3                       599999999999999999999999999999998755555554 3448889888643


Q ss_pred             CeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC
Q 046226          248 GVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG  327 (434)
Q Consensus       248 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  327 (434)
                       .|+.|+.|..+.+||++......+    ..-...+-.++++++-|++.-+++++-||.|.+=.++...........++.
T Consensus       147 -~LvVg~~~r~v~iyDLRn~~~~~q----~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  147 -RLVVGTSDRKVLIYDLRNLDEPFQ----RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             -EEEEeecCceEEEEEcccccchhh----hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence             888999999999999993332221    111223457899999999888999999999988766554222222223333


Q ss_pred             cc---------cceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE
Q 046226          328 HT---------HAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI  396 (434)
Q Consensus       328 ~~---------~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  396 (434)
                      |.         .+|.+++|++.  .|+||+.||.|.+||+.+.   +.+..+..-...|.+++|+.+         |..|
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~slsfs~d---------G~~L  289 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLSFSMD---------GSLL  289 (323)
T ss_pred             eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEEeccC---------CCeE
Confidence            43         37788999865  7999999999999999987   556666666778999999999         8999


Q ss_pred             EEeec
Q 046226          397 CTGSL  401 (434)
Q Consensus       397 ~s~~~  401 (434)
                      |.++.
T Consensus       290 Aia~s  294 (323)
T KOG1036|consen  290 AIASS  294 (323)
T ss_pred             EEEec
Confidence            99873

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.2e-28  Score=215.97  Aligned_cols=314  Identities=19%  Similarity=0.222  Sum_probs=234.6

Q ss_pred             CCCccccee--eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEE
Q 046226           75 SPETSSSYR--CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYA  147 (434)
Q Consensus        75 ~~~~~~~~~--~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~  147 (434)
                      ++.+++.|-  |--.+.+|++.|.||+.  .|.+|++|+.||+|+||.+.++.++.++.. .+.|.||+|+|.   .+++
T Consensus       381 sp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLA  459 (733)
T KOG0650|consen  381 SPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLA  459 (733)
T ss_pred             ChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEE
Confidence            344444443  33447899999999999  899999999999999999999999998874 457999999996   4555


Q ss_pred             EEcCCeEEEeecCCCCCceee----EeeeccCCCC---ceeE--------EEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226          148 AYGDGKIRVWRSTWDNGVKHV----KLATIPKTGG---AVRN--------LIVGKDKMMKHMGPITSIAINVSDDTLYSA  212 (434)
Q Consensus       148 ~s~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  212 (434)
                      ++....+.|-+..-+..+...    .+...+....   .+..        +..+......|...|..|.|+..|.||++.
T Consensus       460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV  539 (733)
T KOG0650|consen  460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV  539 (733)
T ss_pred             EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence            555555777765544322111    0011100000   0000        000111234699999999999999999987


Q ss_pred             ecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEE
Q 046226          213 SLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKT  288 (434)
Q Consensus       213 ~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  288 (434)
                      ..+   ..|.|+++...+....|....+.|.++.|+|.. +|+.++. ..|++||+.      ....+..+......|..
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~------kqelvKkL~tg~kwiS~  612 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLS------KQELVKKLLTGSKWISS  612 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehh------HHHHHHHHhcCCeeeee
Confidence            654   479999998877777777778899999999998 6666654 579999987      22333344445567999


Q ss_pred             EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEe------ccCCC
Q 046226          289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWA------REQDG  360 (434)
Q Consensus       289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd------~~~~~  360 (434)
                      ++++|.|..|+.|+.|+.+..||+......   .+.+..|...+..++++++  +|++|+.||++.||.      +....
T Consensus       613 msihp~GDnli~gs~d~k~~WfDldlsskP---yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp  689 (733)
T KOG0650|consen  613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKP---YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP  689 (733)
T ss_pred             eeecCCCCeEEEecCCCeeEEEEcccCcch---hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC
Confidence            999999999999999999999999654433   3467789999999999987  799999999999984      33333


Q ss_pred             ceeeEEEeeccccc----eeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226          361 RHTMLAVLVGHRGP----IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       361 ~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw  408 (434)
                      ...++..+.+|...    |..+.|+|.         ...|+++|.||+|++|
T Consensus       690 liVPlK~L~gH~~~~~~gVLd~~wHP~---------qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  690 LIVPLKRLRGHEKTNDLGVLDTIWHPR---------QPWLFSAGADGTIRLF  732 (733)
T ss_pred             ceEeeeeccCceeecccceEeecccCC---------CceEEecCCCceEEee
Confidence            45678889999776    888899998         8899999999999998

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.7e-29  Score=193.85  Aligned_cols=251  Identities=18%  Similarity=0.221  Sum_probs=200.2

Q ss_pred             cCCCccEEEE--EEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec--
Q 046226          129 KAKTSMVVAM--EVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV--  204 (434)
Q Consensus       129 ~~~~~~v~~l--~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  204 (434)
                      ..|...|.++  .|...+|++|+.|++|+|+.++.+.....+.                   ++.+|.++|..++|..  
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~-------------------~L~Gh~GPVwqv~wahPk   68 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA-------------------ELTGHSGPVWKVAWAHPK   68 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeee-------------------EecCCCCCeeEEeecccc
Confidence            3566666654  4556799999999999999988665422221                   2348999999999975  


Q ss_pred             CCCEEEEEecCCcEEEEEcCCCe--eEEEcccCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226          205 SDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       205 ~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      -|.+|++++.||.|.||.-+.++  ....+..|...|++++|.|.+   .|++++.||.|.|.+.+..   .........
T Consensus        69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~---g~w~t~ki~  145 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS---GGWTTSKIV  145 (299)
T ss_pred             cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC---CCccchhhh
Confidence            69999999999999999988774  345566799999999999877   8999999999999998732   233344455


Q ss_pred             cccccCeEEEEEecC---C-----------CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-----
Q 046226          280 TAKYSPVKTLTLTLD---D-----------GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-----  340 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----  340 (434)
                      ..|.-.|++++|.|.   |           +.|++|+.|..|+||+....  .......+.+|...|..++|.+.     
T Consensus       146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~  223 (299)
T KOG1332|consen  146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPK  223 (299)
T ss_pred             hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCc
Confidence            678889999999985   4           56999999999999998754  45555678999999999998643     


Q ss_pred             -EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          341 -YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       341 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                       +|++++.||++.||..+.....-....+......+..+.|++.         |++|+.++.|+.|.+|.-+-
T Consensus       224 s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s---------Gn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  224 STIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS---------GNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             eeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc---------ccEEEEecCCcEEEEEEeCC
Confidence             8999999999999988744222233344456788999999999         99999999999999998653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=220.58  Aligned_cols=299  Identities=14%  Similarity=0.178  Sum_probs=223.0

Q ss_pred             EEEEE--cCCEEEEEeCCCeEEEecCCCceeEe---eccCCCccEEEEEEeC-------------CEEEEEEcCCeEEEe
Q 046226           96 LCIAV--GNGFIYTGSDSNVIRIWKQPEFTECG---RLKAKTSMVVAMEVSH-------------DRVYAAYGDGKIRVW  157 (434)
Q Consensus        96 ~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~l~~~~-------------~~l~~~s~dg~i~vw  157 (434)
                      .++.|  ..+.|.+...|..++|||+.+-..+.   .+--|...|+++.--|             .-+++++.|++|++|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            34556  46788888999999999998754433   3445888888887654             158999999999999


Q ss_pred             ecCCCCCceeeEeeec-------c---CCCCce-----eEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 046226          158 RSTWDNGVKHVKLATI-------P---KTGGAV-----RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR  222 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~-------~---~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  222 (434)
                      |+.....-..+....+       +   .....+     ..+........+....+.+++.+|++++|++|..-|+|+|||
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~  487 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD  487 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence            9986322222111100       0   000000     001111112234556799999999999999999999999999


Q ss_pred             cCCCeeEEEcccCccCeEEEEEcCCC----eEEEEeCCCeEEEEecccccCcceeEEEEEeccc----------------
Q 046226          223 IRDSKCIETIQAHSEPINALVVADDG----VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK----------------  282 (434)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------------  282 (434)
                      +...+....+..|...|.|+.++...    +|++++.|..|++||+..     ...+..++.+|                
T Consensus       488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNR  562 (1080)
T ss_pred             ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCce
Confidence            99988888899999999999998543    899999999999999751     11111111111                


Q ss_pred             ---------------------------------ccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc
Q 046226          283 ---------------------------------YSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT  329 (434)
Q Consensus       283 ---------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  329 (434)
                                                       ...++.+++.|..+++++++.|.+|+|||+...+....+. .-.+|.
T Consensus       563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK-gs~~~e  641 (1080)
T KOG1408|consen  563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK-GSRDHE  641 (1080)
T ss_pred             EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec-ccccCC
Confidence                                             2246677788888899999999999999998766554443 334566


Q ss_pred             cceEEEE--eeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226          330 HAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       330 ~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                      +....+.  ++|.|+++.+.|.++.++|..++   +++....||...|+.+.|.+|         .+.|++.+.||.|.|
T Consensus       642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~nD---------CkHlISvsgDgCIFv  709 (1080)
T KOG1408|consen  642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLND---------CKHLISVSGDGCIFV  709 (1080)
T ss_pred             CceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeeccc---------chhheeecCCceEEE
Confidence            6665554  55789999999999999999998   899999999999999999999         999999999999999


Q ss_pred             EecCC
Q 046226          408 WRVTR  412 (434)
Q Consensus       408 w~~~~  412 (434)
                      |.+..
T Consensus       710 W~lp~  714 (1080)
T KOG1408|consen  710 WKLPL  714 (1080)
T ss_pred             EECch
Confidence            99975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.2e-28  Score=196.41  Aligned_cols=266  Identities=18%  Similarity=0.193  Sum_probs=207.3

Q ss_pred             ccccEEEEEE---cCCEEEEEeCCCeEEEecCCC-ceeE-eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCC
Q 046226           91 KDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE-FTEC-GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDN  163 (434)
Q Consensus        91 h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~  163 (434)
                      .++.|.+|+|   ...+++.|+.||+||+|+++. +..+ .....|.++|.+++|+.+  .+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            5778999999   567888999999999999977 3333 345679999999999987  89999999999999999885


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC--EEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD--TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA  241 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  241 (434)
                      ....-                       .|.++|.++.|-+...  .|++|+.|.+|+.||.+...++.++. -.+.+++
T Consensus       106 ~~~v~-----------------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa  161 (347)
T KOG0647|consen  106 VSQVA-----------------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA  161 (347)
T ss_pred             eeeee-----------------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence            44333                       4999999999988765  89999999999999999988888887 4456777


Q ss_pred             EEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc
Q 046226          242 LVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY  321 (434)
Q Consensus       242 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  321 (434)
                      +..-.. +++.+..+..|.+|+++....  ..  ........-.+++++..++....+.|+-+|.+.|..+........ 
T Consensus       162 ~Dv~~p-m~vVata~r~i~vynL~n~~t--e~--k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n-  235 (347)
T KOG0647|consen  162 ADVLYP-MAVVATAERHIAVYNLENPPT--EF--KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN-  235 (347)
T ss_pred             hhccCc-eeEEEecCCcEEEEEcCCCcc--hh--hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc-
Confidence            766433 788888899999999962111  11  111112334688999999888889999999999999876533222 


Q ss_pred             cCcccCcc---------cceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCC
Q 046226          322 GGALQGHT---------HAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETE  390 (434)
Q Consensus       322 ~~~~~~~~---------~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  390 (434)
                       ..++.|.         ..|..++|++.  .|++++.||++.+||-...   ..+...+.|..+|++..|+.+       
T Consensus       236 -FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~fn~~-------  304 (347)
T KOG0647|consen  236 -FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCSFNRN-------  304 (347)
T ss_pred             -eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeEecCC-------
Confidence             2233333         35667788754  7999999999999998876   667778889999999999988       


Q ss_pred             CcccEEEEe
Q 046226          391 DEYCTICTG  399 (434)
Q Consensus       391 ~~~~~l~s~  399 (434)
                        |.+++-+
T Consensus       305 --G~ifaYA  311 (347)
T KOG0647|consen  305 --GSIFAYA  311 (347)
T ss_pred             --CCEEEEE
Confidence              7777644

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-28  Score=200.27  Aligned_cols=288  Identities=18%  Similarity=0.275  Sum_probs=239.5

Q ss_pred             CCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCc-----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEE
Q 046226           44 PPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPET-----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRI  116 (434)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~i  116 (434)
                      ..++.+.+.+|...+...........+.+++.|.+     +.+.+|+.++.||.|.|+|+.|  .+.+++|++.|++-.|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            34567889999999988776666667777777755     6778899999999999999999  7889999999999999


Q ss_pred             ecC------CC----------------------------------ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeE
Q 046226          117 WKQ------PE----------------------------------FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKI  154 (434)
Q Consensus       117 wd~------~~----------------------------------~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i  154 (434)
                      |..      ..                                  ..++..+.+|.+.|.+..|-..  .++++++|.+.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            962      10                                  1123456788888888888654  89999999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcc
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQ  233 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~  233 (434)
                      .+||+++++.+..+.                      +|....+.++-+|..+++++.+.|.+.++||++.. ..+..|+
T Consensus       297 nlwDVEtge~v~~Lt----------------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  297 NLWDVETGEVVNILT----------------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ  354 (481)
T ss_pred             eeeeeccCceecccc----------------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence            999999887776663                      79999999999999999999999999999999743 5678899


Q ss_pred             cCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          234 AHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      +|...|+++.|.-+..+++|+.|.+|++||++     .....+.++. ...+++.++++..+..++.--.+..|++||++
T Consensus       355 GHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLr-----NMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  355 GHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLR-----NMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             ccccceeEEEEecCCceeecCCCceEEEeeec-----cccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecC
Confidence            99999999999988899999999999999998     2333333333 34688999999988899999999999999998


Q ss_pred             cccccccccCcccCcccceEEEEeeCC----EEEEecCCCcEEEEeccCC
Q 046226          314 WFSAQLQYGGALQGHTHAVMCLASVAN----YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~s~~~dg~i~iwd~~~~  359 (434)
                      ............++|...|.|.+|..+    -|++++.|..+.-|++...
T Consensus       429 G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  429 GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            666555555566799999999999754    5788999999999998754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.4e-27  Score=203.14  Aligned_cols=288  Identities=19%  Similarity=0.277  Sum_probs=228.5

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeE----ee-------------c-cCCCccEEEEEEeCC-
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTEC----GR-------------L-KAKTSMVVAMEVSHD-  143 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~----~~-------------~-~~~~~~v~~l~~~~~-  143 (434)
                      +..+..|.-+|+||++  ++.++++++.|++|.=|++.+++..    .+             - +.|...+.+++.++| 
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4556779999999999  8899999999999999998776533    11             1 267889999999998 


Q ss_pred             -EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 046226          144 -RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR  222 (434)
Q Consensus       144 -~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  222 (434)
                       +|++|+.|..|.||+.++.+.++.+.                      +|.+.|.+++|-.....|++++.|+.|++|+
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~----------------------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~  272 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFK----------------------GHRGAVSSLAFRKGTSELYSASADRSVKVWS  272 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhccc----------------------ccccceeeeeeecCccceeeeecCCceEEEe
Confidence             89999999999999999887776653                      7999999999998888999999999999999


Q ss_pred             cCCCeeEEEcccCccCeEEEEEcCCCeEEE-EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226          223 IRDSKCIETIQAHSEPINALVVADDGVLYS-ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      ++....+.++.+|.+.|..|....-+.+++ |+.|+++++|++.       ......+.++.+.+.|++|-.+ ..+++|
T Consensus       273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-------eesqlifrg~~~sidcv~~In~-~HfvsG  344 (479)
T KOG0299|consen  273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-------EESQLIFRGGEGSIDCVAFIND-EHFVSG  344 (479)
T ss_pred             hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc-------ccceeeeeCCCCCeeeEEEecc-cceeec
Confidence            999999999999999999999887775554 5599999999985       2233456677889999999854 679999


Q ss_pred             cCCCeEEEEEcCcccccccccC---cc-----cCcccceEEEEee--CCEEEEecCCCcEEEEeccCCC-ceeeEEEeec
Q 046226          302 CTDGYIHYWHKGWFSAQLQYGG---AL-----QGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDG-RHTMLAVLVG  370 (434)
Q Consensus       302 ~~dg~i~i~d~~~~~~~~~~~~---~~-----~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~  370 (434)
                      +.+|.|.+|++-..+.......   ..     ..+...|++++..  .+++++|+.+|.|++|-+..+. ...++..+. 
T Consensus       345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-  423 (479)
T KOG0299|consen  345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-  423 (479)
T ss_pred             cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-
Confidence            9999999999875544332210   00     1222378888765  5699999999999999998873 345555655 


Q ss_pred             cccceeEEEEeecccCCCCCCccc-EEEEeecCCeEEEEecCC
Q 046226          371 HRGPIRCAIAFLGRFGEETEDEYC-TICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       371 h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~iw~~~~  412 (434)
                      -.+.|++++|+++         |. +++..+....+--|-...
T Consensus       424 ~~GfVNsl~f~~s---------gk~ivagiGkEhRlGRW~~~k  457 (479)
T KOG0299|consen  424 LVGFVNSLAFSNS---------GKRIVAGIGKEHRLGRWWCLK  457 (479)
T ss_pred             cccEEEEEEEccC---------CCEEEEecccccccceeeEee
Confidence            5788999999998         77 555556666665555443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=5.7e-28  Score=204.04  Aligned_cols=262  Identities=17%  Similarity=0.224  Sum_probs=214.4

Q ss_pred             CccCCCCCCCcc-----cceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEE
Q 046226           68 TAAAGSSSPETS-----SSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV  140 (434)
Q Consensus        68 ~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  140 (434)
                      ..+.+++.|.+.     ...+.+.++.||.-.|+.+.+  +...+++++.|-.|+||.............|..+|+.+..
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~  311 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL  311 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence            456666666543     334457789999999999999  7889999999999999999888888888999999999999


Q ss_pred             eCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcE
Q 046226          141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTI  218 (434)
Q Consensus       141 ~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  218 (434)
                      +|.  ++++++.||+..+.|++++..+......                    ...-.+++.+|+|||..|.+|..||.|
T Consensus       312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--------------------~s~v~~ts~~fHpDgLifgtgt~d~~v  371 (506)
T KOG0289|consen  312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--------------------TSDVEYTSAAFHPDGLIFGTGTPDGVV  371 (506)
T ss_pred             ccCCcEEEEecCCceEEEEEccCCcEEEEEeec--------------------cccceeEEeeEcCCceEEeccCCCceE
Confidence            985  9999999999999999888766554210                    122358999999999999999999999


Q ss_pred             EEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226          219 KVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL  297 (434)
Q Consensus       219 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  297 (434)
                      ++||+..+..+..|.+|.++|..+.|+.+| +|+++.+|+.|++||+|...     ...........++.++.|++.|.+
T Consensus       372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~~~~~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLDEKKEVNSLSFDQSGTY  446 (506)
T ss_pred             EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeeccccccceeEEEcCCCCe
Confidence            999999999999999999999999999999 99999999999999999222     111111122347999999999999


Q ss_pred             EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEec
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAR  356 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~  356 (434)
                      |+.++.|=.|++++-  ....+.....+..|.+..+++.|.  ..++++++.|..++++.+
T Consensus       447 L~~~g~~l~Vy~~~k--~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  447 LGIAGSDLQVYICKK--KTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEeecceeEEEEEec--ccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            999987766666653  344556666777888888888886  459999999999988854

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=3.5e-28  Score=208.98  Aligned_cols=277  Identities=16%  Similarity=0.259  Sum_probs=221.5

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc---eeEeecc--CCCccEEEEEEeCC--EEEEEEcCCeEEEee
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF---TECGRLK--AKTSMVVAMEVSHD--RVYAAYGDGKIRVWR  158 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~--~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd  158 (434)
                      .+.|..-|.++.+  ..+.++||+. |.|+|||+...   ..+..+.  .....|.++...||  .|++|+.-.++.|||
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            3458888888888  6789999986 79999998642   2333332  24667889999887  899999999999999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP  238 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  238 (434)
                      +.........++                    ....-.+.+++.+||.+..++++.||.|.|||+.....++.|++|.+.
T Consensus       494 LAapTprikael--------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG  553 (705)
T KOG0639|consen  494 LAAPTPRIKAEL--------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG  553 (705)
T ss_pred             ccCCCcchhhhc--------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence            976544322221                    123346788999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      +.||.++++| .|.+|+-|.+||.||++.......       ......|.++.++|++.+|++|-+++.+.+....... 
T Consensus       554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqq-------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-  625 (705)
T KOG0639|consen  554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-  625 (705)
T ss_pred             ceeEEecCCCceeecCCCccceeehhhhhhhhhhh-------hhhhhhheecccCCCccceeeecccCcEEEEecCCcc-
Confidence            9999999999 999999999999999982211111       1234679999999999999999999999988764222 


Q ss_pred             cccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccE
Q 046226          318 QLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT  395 (434)
Q Consensus       318 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  395 (434)
                        +  ..+..|...|.++.|.  |+++++.+.|+.+-.|...-+.   .+...+ ....|.++.++.+         .++
T Consensus       626 --k--yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa---siFqsk-E~SsVlsCDIS~d---------dky  688 (705)
T KOG0639|consen  626 --K--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SIFQSK-ESSSVLSCDISFD---------DKY  688 (705)
T ss_pred             --c--eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc---ceeecc-ccCcceeeeeccC---------ceE
Confidence              2  2455788899988874  9999999999999999998873   333332 3567999999988         899


Q ss_pred             EEEeecCCeEEEEec
Q 046226          396 ICTGSLDGVLKMWRV  410 (434)
Q Consensus       396 l~s~~~Dg~v~iw~~  410 (434)
                      |+||+.|....+|.+
T Consensus       689 IVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  689 IVTGSGDKKATVYEV  703 (705)
T ss_pred             EEecCCCcceEEEEE
Confidence            999999999888876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.8e-29  Score=219.62  Aligned_cols=328  Identities=18%  Similarity=0.189  Sum_probs=241.6

Q ss_pred             CCCCccCCCCCCCccccee-----------eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc--eeEeecc
Q 046226           65 FNPTAAAGSSSPETSSSYR-----------CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF--TECGRLK  129 (434)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~  129 (434)
                      +..+.+++++.|..++.|.           ++.+++.|.+.|..++.  +++.|++++.|-+|++|+....  -+..++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            3455788999888877665           35667889999999998  7889999999999999998776  5677889


Q ss_pred             CCCccEEEEEE-eCC--EEEEEEcCCeEEEeecCCCCC--ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec
Q 046226          130 AKTSMVVAMEV-SHD--RVYAAYGDGKIRVWRSTWDNG--VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV  204 (434)
Q Consensus       130 ~~~~~v~~l~~-~~~--~l~~~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  204 (434)
                      .|...|.|+++ .++  .+++|+-|+.|.+||++.+..  +..+.....       ..      ...++...|.+++.++
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~-------~s------l~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV-------NS------LGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc-------cc------CCCCCccceeeeecCC
Confidence            99999999999 554  788889999999999987633  211111000       00      1116889999999999


Q ss_pred             CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226          205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY  283 (434)
Q Consensus       205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  283 (434)
                      .+..|++|+..+.|++||.++++.+..+++|...|.++..++|| .+++++.||+|++||+.      .+..+.++..|.
T Consensus       182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg------qQrCl~T~~vH~  255 (735)
T KOG0308|consen  182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG------QQRCLATYIVHK  255 (735)
T ss_pred             cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc------ccceeeeEEecc
Confidence            99999999999999999999999999999999999999999999 99999999999999998      566677788899


Q ss_pred             cCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCc
Q 046226          284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGR  361 (434)
Q Consensus       284 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~  361 (434)
                      ..|.++..+|+-.++++|+.||.|..-|++..... ....   ....+|..+..+  .+-+.+++.|+.|+-|..+....
T Consensus       256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-tlic---k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~  331 (735)
T KOG0308|consen  256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-TLIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIA  331 (735)
T ss_pred             CceEEEeeCCCcceEEecCCCCcEEecccCCchhh-eEee---cCCCchhhhhhccccCCceeeeccccceecCCccccc
Confidence            99999999999999999999999999999865222 1111   122344444443  44457778888899887653210


Q ss_pred             eeeEEEeecc----ccceeEEEEeecc-----cCC---CCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          362 HTMLAVLVGH----RGPIRCAIAFLGR-----FGE---ETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       362 ~~~~~~~~~h----~~~v~~~~~~~~~-----~~~---~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ......+..|    ...+.+....|+.     .+.   ..-.+.++++|-..+|.+.+||+-....
T Consensus       332 l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~  397 (735)
T KOG0308|consen  332 LSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVK  397 (735)
T ss_pred             cccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeee
Confidence            0000000000    0011111111110     000   0011267999999999999999986654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.8e-28  Score=213.37  Aligned_cols=237  Identities=19%  Similarity=0.271  Sum_probs=203.9

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccC-CCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCcee
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKA-KTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      +.+.|+++.|  +|++|++|..+|.|.|||..+.+.+..+.+ |...|-+++|....+.+|+.|+.|..+|++..+....
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~  295 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS  295 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh
Confidence            4789999999  899999999999999999999999999998 9999999999998999999999999999986654433


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD  247 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  247 (434)
                      .                     +.+|...|..+.|++|+.+|++|+.|+.+.|||....+++..+..|...|.+++|+|-
T Consensus       296 ~---------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~  354 (484)
T KOG0305|consen  296 T---------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW  354 (484)
T ss_pred             h---------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCC
Confidence            1                     2369999999999999999999999999999999888899999999999999999986


Q ss_pred             C--eEEEEe--CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE--cCCCeEEEEEcCcccccccc
Q 046226          248 G--VLYSAS--DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG--CTDGYIHYWHKGWFSAQLQY  321 (434)
Q Consensus       248 ~--~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~  321 (434)
                      .  +||+|+  .|+.|++||..      ....+... .....|.++.|++..+-|+++  ..+..|.||+...    ...
T Consensus       355 q~~lLAsGGGs~D~~i~fwn~~------~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps----~~~  423 (484)
T KOG0305|consen  355 QSGLLATGGGSADRCIKFWNTN------TGARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS----MKL  423 (484)
T ss_pred             ccCceEEcCCCcccEEEEEEcC------CCcEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc----cce
Confidence            5  888875  69999999987      22222222 234689999999988766664  5578999999754    455


Q ss_pred             cCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          322 GGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       322 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ...+.+|...|..++++  |..+++|+.|.++++|++-..
T Consensus       424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            56778999999998875  679999999999999999874

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.1e-26  Score=187.49  Aligned_cols=255  Identities=16%  Similarity=0.162  Sum_probs=199.3

Q ss_pred             eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (434)
                      +..+.+..-...|.++.|+.+  .+++++.|..+++||...++.++.+.                      .+.-.|..+
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~----------------------skkyG~~~~   62 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN----------------------SKKYGVDLA   62 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee----------------------cccccccEE
Confidence            344455556788999999987  78888999999999999888777763                      355578888


Q ss_pred             EEecCCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226          201 AINVSDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       201 ~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  277 (434)
                      +|....+.++.++.  |.+|+..++.+.+.++-|.+|...|.+|+.+|-+ .+++++.|++|++||++..  ....    
T Consensus        63 ~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~--~cqg----  136 (311)
T KOG1446|consen   63 CFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK--KCQG----  136 (311)
T ss_pred             EEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC--CCce----
Confidence            88877777776665  8899999999999999999999999999999988 9999999999999999821  1111    


Q ss_pred             EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCccc-CcccceEEEEe--eCCEEEEecCCCcEEEE
Q 046226          278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ-GHTHAVMCLAS--VANYVISGSADSTSRVW  354 (434)
Q Consensus       278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~s~~~dg~i~iw  354 (434)
                      .+.  ...-..++|+|+|-++|++.....|++||++...........+. ........+.|  +|++++.++..+.+++.
T Consensus       137 ~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l  214 (311)
T KOG1446|consen  137 LLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLL  214 (311)
T ss_pred             EEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence            111  12334579999999999999888999999987633222211222 34455666666  58899999999999999


Q ss_pred             eccCCCceeeEEEeeccccce---eEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccccc
Q 046226          355 AREQDGRHTMLAVLVGHRGPI---RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGH  419 (434)
Q Consensus       355 d~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~  419 (434)
                      |.-.|   .....+.++...-   ....|.|+         ++++++|+.||+|.+|+++++++....
T Consensus       215 DAf~G---~~~~tfs~~~~~~~~~~~a~ftPd---------s~Fvl~gs~dg~i~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  215 DAFDG---TVKSTFSGYPNAGNLPLSATFTPD---------SKFVLSGSDDGTIHVWNLETGKKVAVL  270 (311)
T ss_pred             EccCC---cEeeeEeeccCCCCcceeEEECCC---------CcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence            99988   5666666654432   56788898         999999999999999999998875443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=4.5e-28  Score=216.02  Aligned_cols=273  Identities=21%  Similarity=0.328  Sum_probs=223.2

Q ss_pred             CCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-------eEEEeeccccEEE-EEE---cCCEEEEEeCCCeE
Q 046226           46 RFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-------ISSVLKKDGQILC-IAV---GNGFIYTGSDSNVI  114 (434)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~-~~~---~~~~l~tg~~dg~i  114 (434)
                      ++...+.+|+..+...... ++..+.+++.+++++.|..       ...+.+|.+-|.+ +++   ++..|++|+.|++|
T Consensus         5 ~ls~~l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eeEEEeccCccchheeEec-CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            3456677888777554332 3445667777888777766       4567788888888 888   56779999999999


Q ss_pred             EEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226          115 RIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH  193 (434)
Q Consensus       115 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
                      .+|...+..+...+++|...|.+++...+ .+++||+|.++++|....-..  .                      +.+|
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~--~----------------------l~gH  139 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY--S----------------------LQGH  139 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhc--c----------------------cCCc
Confidence            99999999999999999999999997766 789999999999997642211  1                      2479


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCccee
Q 046226          194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLH  273 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  273 (434)
                      ...|++++.-|++ .+++|+.|.+|++|.-  ++.+++|.+|.+.|+.+++-+++.+++++.||.|++|++.       .
T Consensus       140 ~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-------g  209 (745)
T KOG0301|consen  140 TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-------G  209 (745)
T ss_pred             chheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-------C
Confidence            9999999999988 8999999999999975  7889999999999999999999999999999999999975       4


Q ss_pred             EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CCEEEEecCCCcEE
Q 046226          274 TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGSADSTSR  352 (434)
Q Consensus       274 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~  352 (434)
                      ..+..+.+|..-+.++....++..++++++|++++||+..      +..+.+......|++..+- ..-+++|+.||.||
T Consensus       210 e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~------e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~Vr  283 (745)
T KOG0301|consen  210 EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD------ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVR  283 (745)
T ss_pred             ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC------ceEEEEecCccceEEEEEeeCCCEEEeccCceEE
Confidence            5677888999999999988899999999999999999864      2223333344467777653 55678889999999


Q ss_pred             EEeccCC
Q 046226          353 VWAREQD  359 (434)
Q Consensus       353 iwd~~~~  359 (434)
                      ||.....
T Consensus       284 VfT~~k~  290 (745)
T KOG0301|consen  284 VFTVDKD  290 (745)
T ss_pred             EEEeccc
Confidence            9987643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.7e-27  Score=203.16  Aligned_cols=278  Identities=17%  Similarity=0.239  Sum_probs=217.4

Q ss_pred             EEEeCCC-eEEEecCCCceeEeeccCC-CccEEEE-EEeCCEEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226          106 YTGSDSN-VIRIWKQPEFTECGRLKAK-TSMVVAM-EVSHDRVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVR  181 (434)
Q Consensus       106 ~tg~~dg-~i~iwd~~~~~~~~~~~~~-~~~v~~l-~~~~~~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      .+++.|. .+.+||+.+|....++++. ...-.++ ...+.+++++.. -..|.+|.+..........            
T Consensus        11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------------   78 (476)
T KOG0646|consen   11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYI------------   78 (476)
T ss_pred             eccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhc------------
Confidence            3344454 5999999999999988875 2222222 334456666654 5688999886554433111            


Q ss_pred             EEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEE
Q 046226          182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVR  260 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~  260 (434)
                                --.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+ +|++|+.||.|.
T Consensus        79 ----------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~  148 (476)
T KOG0646|consen   79 ----------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVL  148 (476)
T ss_pred             ----------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEE
Confidence                      256789999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             EEecccc---cCcceeEEEEEecccccCeEEEEEecC--CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEE
Q 046226          261 VWRRYFY---SENQLHTLILTLTAKYSPVKTLTLTLD--DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL  335 (434)
Q Consensus       261 iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  335 (434)
                      +|++...   .......+...+..|.-+|+.+...+.  ..+|++++.|.++++||+.........     .....+.++
T Consensus       149 vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-----~fp~si~av  223 (476)
T KOG0646|consen  149 VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-----TFPSSIKAV  223 (476)
T ss_pred             EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-----ecCCcceeE
Confidence            9987522   122245667788899999999998775  468999999999999999866444433     223456666


Q ss_pred             Eee--CCEEEEecCCCcEEEEeccCCC-------------ceeeEEEeecccc--ceeEEEEeecccCCCCCCcccEEEE
Q 046226          336 ASV--ANYVISGSADSTSRVWAREQDG-------------RHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICT  398 (434)
Q Consensus       336 ~~~--~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s  398 (434)
                      +.+  +..+++|+.+|.|.+.++....             ....+..+.||.+  .|+|++++-|         |.+|++
T Consensus       224 ~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D---------gtlLlS  294 (476)
T KOG0646|consen  224 ALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD---------GTLLLS  294 (476)
T ss_pred             EEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC---------ccEEEe
Confidence            665  6799999999999998876532             1245667889998  9999999999         999999


Q ss_pred             eecCCeEEEEecCCCCccccc
Q 046226          399 GSLDGVLKMWRVTRPKSSCGH  419 (434)
Q Consensus       399 ~~~Dg~v~iw~~~~~~~~~~~  419 (434)
                      |+.||.|.|||+.+.+.+...
T Consensus       295 Gd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  295 GDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             eCCCCCEEEEecchHHHHHHH
Confidence            999999999999987655433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.1e-28  Score=190.80  Aligned_cols=241  Identities=19%  Similarity=0.223  Sum_probs=196.7

Q ss_pred             CcccccCCCCCCCCCCCCCccCCCCCCCccccee--------eeEEEeeccccEEEEEE----cCCEEEEEeCCCeEEEe
Q 046226           50 PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR--------CISSVLKKDGQILCIAV----GNGFIYTGSDSNVIRIW  117 (434)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~----~~~~l~tg~~dg~i~iw  117 (434)
                      ....|...+-.....+.+.+++++++|.+++.+.        .+.+|.||.++|+.++|    -|++||+++.||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            4567888888888889999999999999988764        46789999999999999    59999999999999999


Q ss_pred             cCCCce--eEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccccc
Q 046226          118 KQPEFT--ECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMM  191 (434)
Q Consensus       118 d~~~~~--~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (434)
                      .-++++  .......|...|++++|.|.    .|++++.||.|.|.+.+....-...+                   ...
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k-------------------i~~  146 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK-------------------IVF  146 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh-------------------hhh
Confidence            987753  44556789999999999996    68889999999999987652221111                   113


Q ss_pred             CcCCCeEEEEEecC---C-----------CEEEEEecCCcEEEEEcCCC--eeEEEcccCccCeEEEEEcCCC-----eE
Q 046226          192 KHMGPITSIAINVS---D-----------DTLYSASLDKTIKVWRIRDS--KCIETIQAHSEPINALVVADDG-----VL  250 (434)
Q Consensus       192 ~~~~~v~~~~~~~~---~-----------~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~-----~l  250 (434)
                      .|.-.|++++|.|.   |           +.|++|+.|+.|+||+...+  +.-.++.+|.+.|+.++|.|.-     .|
T Consensus       147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i  226 (299)
T KOG1332|consen  147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI  226 (299)
T ss_pred             ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence            69999999999985   4           56999999999999999875  3445688999999999999864     79


Q ss_pred             EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226          251 YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK  312 (434)
Q Consensus       251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  312 (434)
                      ++++.||++.||-.+...+....+   .+......+..+.|+..|+.|++++.|..|.+|.-
T Consensus       227 AS~SqDg~viIwt~~~e~e~wk~t---ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  227 ASCSQDGTVIIWTKDEEYEPWKKT---LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             EEecCCCcEEEEEecCccCccccc---ccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            999999999999776222222222   23335578999999999999999999999999974

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=6e-27  Score=189.12  Aligned_cols=247  Identities=15%  Similarity=0.199  Sum_probs=184.7

Q ss_pred             CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC
Q 046226          130 AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD  206 (434)
Q Consensus       130 ~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  206 (434)
                      ..++.|.+|+|+|.   .+++++.||+||+|++.........                    ....|.++|.+++|+.||
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k--------------------a~~~~~~PvL~v~Wsddg   84 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK--------------------AQQSHDGPVLDVCWSDDG   84 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccch--------------------hhhccCCCeEEEEEccCC
Confidence            45678999999994   6668899999999999764221111                    112599999999999999


Q ss_pred             CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226          207 DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY  283 (434)
Q Consensus       207 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  283 (434)
                      ..+++|+.|+.+++||+.+++ +..+..|.++|..+.|-+..   .|++|+.|.+|+.||.+      ....+..+.. .
T Consensus        85 skVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R------~~~pv~t~~L-P  156 (347)
T KOG0647|consen   85 SKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR------SSNPVATLQL-P  156 (347)
T ss_pred             ceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccC------CCCeeeeeec-c
Confidence            999999999999999999995 56777899999999998765   79999999999999998      2222222221 2


Q ss_pred             cCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCc
Q 046226          284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGR  361 (434)
Q Consensus       284 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~  361 (434)
                      ..+.++..  -..+++++..+..|.+|+++......+.....  -.-.+.|++.  +.+..+.|+-+|.+.|..+..+..
T Consensus       157 eRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~  232 (347)
T KOG0647|consen  157 ERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESP--LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP  232 (347)
T ss_pred             ceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCc--ccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence            34444443  34688899999999999997554443332221  2234455554  455669999999999999987633


Q ss_pred             eeeEEEeecccc---------ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcccc
Q 046226          362 HTMLAVLVGHRG---------PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCG  418 (434)
Q Consensus       362 ~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~  418 (434)
                       ..-..++.|+.         .|.+++|+|.         -..|+|+|.||++.+||-+...++..
T Consensus       233 -~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~---------hgtlvTaGsDGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  233 -KDNFTFKCHRSTNSVNDDVYAVNSIAFHPV---------HGTLVTAGSDGTFSFWDKDARTKLKT  288 (347)
T ss_pred             -cCceeEEEeccCCCCCCceEEecceEeecc---------cceEEEecCCceEEEecchhhhhhhc
Confidence             44455666652         5778999997         78899999999999999876655543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1.4e-27  Score=203.13  Aligned_cols=256  Identities=18%  Similarity=0.227  Sum_probs=205.4

Q ss_pred             CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-
Q 046226          130 AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-  205 (434)
Q Consensus       130 ~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  205 (434)
                      .|.+.|+.+.+.|.   .+++.+..+.|.|||...........       +..     .+.-.+.+|.+.-..++|++. 
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-------~~~-----~Pdl~L~gH~~eg~glsWn~~~  189 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-------GEC-----RPDLRLKGHEKEGYGLSWNRQQ  189 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------ccC-----CCceEEEeeccccccccccccc
Confidence            48888999998874   67777889999999986543322110       000     111123478888888999975 


Q ss_pred             CCEEEEEecCCcEEEEEcCCCe-------eEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226          206 DDTLYSASLDKTIKVWRIRDSK-------CIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLI  276 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~  276 (434)
                      ...|++++.|+.|++||+....       ....+.+|...|..++|++-.  ++++++.|+.+.|||+|.   . ..+..
T Consensus       190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~---~-~~~~~  265 (422)
T KOG0264|consen  190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS---N-TSKPS  265 (422)
T ss_pred             ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC---C-CCCCc
Confidence            4678999999999999996432       355678899999999999876  899999999999999993   1 44455


Q ss_pred             EEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC---EEEEecCCCcEE
Q 046226          277 LTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN---YVISGSADSTSR  352 (434)
Q Consensus       277 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~i~  352 (434)
                      ....+|.+.+.+++|+| ++..||+|+.|++|.+||+|....   ....+.+|...|.++.|++.   .|++++.|+.+.
T Consensus       266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN  342 (422)
T ss_pred             ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence            56778999999999999 567889999999999999986554   44578899999999999854   899999999999


Q ss_pred             EEeccCCC-----------ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          353 VWAREQDG-----------RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       353 iwd~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      |||+..-+           ..+++..-.||...|..+.|+|..        ...|+|.++|+.+.||++..
T Consensus       343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e--------PW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE--------PWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC--------CeEEEEecCCceEEEeeccc
Confidence            99987532           335677888999999999999996        77899999999999999873

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=211.44  Aligned_cols=282  Identities=18%  Similarity=0.254  Sum_probs=207.4

Q ss_pred             cCCEEEEEeCCCeEEEecCCCcee------EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeee
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTE------CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLAT  172 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~  172 (434)
                      ...+||.+.+||.|.++|......      +.....|...|.++.|.|.  .|+++++|.++++||+.....+..-    
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~----  138 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR----  138 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce----
Confidence            355789999999999999865332      3456689999999999997  8999999999999999876554432    


Q ss_pred             ccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCe------------------------
Q 046226          173 IPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSK------------------------  227 (434)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~------------------------  227 (434)
                                      .+.+|...|.+++|.+.+ ..|++|+.||.|.|||++-..                        
T Consensus       139 ----------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp  202 (720)
T KOG0321|consen  139 ----------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP  202 (720)
T ss_pred             ----------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence                            123899999999999965 567899999999999986322                        


Q ss_pred             ---eEEEcccCccC----eEEEEEcCCCeEEEEeC-CCeEEEEecccccCcceeEEEE--Eeccc---ccCeEEEEEecC
Q 046226          228 ---CIETIQAHSEP----INALVVADDGVLYSASD-DATVRVWRRYFYSENQLHTLIL--TLTAK---YSPVKTLTLTLD  294 (434)
Q Consensus       228 ---~~~~~~~~~~~----v~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~--~~~~~---~~~v~~~~~~~~  294 (434)
                         .+...+.+...    |+.+.|-.+..|++++. |+.|+|||++............  .+..+   ...+.++..+..
T Consensus       203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence               01111223333    44455554558888887 9999999998433222222111  12222   346778888888


Q ss_pred             CCEEEEEcCCCeEEEEEcCcccccccccCcccCccc----ceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeec
Q 046226          295 DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH----AVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG  370 (434)
Q Consensus       295 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (434)
                      |.+|++.|.|+.|++|++........  ..+.++..    .-.++.+++.++++|+.|...++|.+.+..  .....+.+
T Consensus       283 Gt~L~AsCtD~sIy~ynm~s~s~sP~--~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~G  358 (720)
T KOG0321|consen  283 GTYLFASCTDNSIYFYNMRSLSISPV--AEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLG  358 (720)
T ss_pred             CCeEEEEecCCcEEEEeccccCcCch--hhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhC
Confidence            99999999999999999975443222  22333321    224566789999999999999999998763  56667889


Q ss_pred             cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          371 HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       371 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      |.-.|++++|.|..        -.-++++++|-.++||++.++-
T Consensus       359 ht~eVt~V~w~pS~--------~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  359 HTREVTTVRWLPSA--------TTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             cceEEEEEeecccc--------CCCceeeccCcceEEEeccCch
Confidence            99999999999875        3347778999999999997653

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-26  Score=187.62  Aligned_cols=255  Identities=15%  Similarity=0.217  Sum_probs=200.0

Q ss_pred             cCCCccEEEEEEeC--CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec--
Q 046226          129 KAKTSMVVAMEVSH--DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV--  204 (434)
Q Consensus       129 ~~~~~~v~~l~~~~--~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  204 (434)
                      .+|..-|.++.|..  .++++|+.|++|+|||.+.........                  .....|.+.|..+.|.+  
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T------------------s~Wrah~~Si~rV~WAhPE   71 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT------------------SSWRAHDGSIWRVVWAHPE   71 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe------------------eeEEecCCcEEEEEecCcc
Confidence            46888899999876  499999999999999975543332221                  12236999999999965  


Q ss_pred             CCCEEEEEecCCcEEEEEcCC---------CeeEEEcccCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcce
Q 046226          205 SDDTLYSASLDKTIKVWRIRD---------SKCIETIQAHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       205 ~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      -|+.+++++.|+++.||.-..         .....++......|+++.|.|..   +|++++.||.+|||+....-+...
T Consensus        72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~  151 (361)
T KOG2445|consen   72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ  151 (361)
T ss_pred             ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence            389999999999999998621         22445666778899999999875   899999999999998763333333


Q ss_pred             eEEEEEec-------ccccCeEEEEEecC---CCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226          273 HTLILTLT-------AKYSPVKTLTLTLD---DGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS  337 (434)
Q Consensus       273 ~~~~~~~~-------~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  337 (434)
                      ..+...+.       .+..+..|+.|+|.   ..+|++|+.+     +.++||.......+......+.+|..+|.+++|
T Consensus       152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w  231 (361)
T KOG2445|consen  152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW  231 (361)
T ss_pred             chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence            33333333       45567889999984   4678888776     589999887766677777888899999999999


Q ss_pred             eCC------EEEEecCCCcEEEEeccCC-----------------CceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          338 VAN------YVISGSADSTSRVWAREQD-----------------GRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       338 ~~~------~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                      .++      .||+++.|| |+||.+...                 -..+.+..+..|.+.|+.+.|.-.         |.
T Consensus       232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt---------Gt  301 (361)
T KOG2445|consen  232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT---------GT  301 (361)
T ss_pred             ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee---------ee
Confidence            754      799999999 999998731                 123566778899999999999998         99


Q ss_pred             EEEEeecCCeEEEEecC
Q 046226          395 TICTGSLDGVLKMWRVT  411 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~~~  411 (434)
                      +|++.|.||.||+|...
T Consensus       302 iLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  302 ILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEeecCCCceeeehhhh
Confidence            99999999999999865

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=4e-26  Score=207.64  Aligned_cols=311  Identities=15%  Similarity=0.214  Sum_probs=248.1

Q ss_pred             CCcccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEc
Q 046226           76 PETSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYG  150 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~  150 (434)
                      .+++++.+.++++.++...|+++.-  -=+.+|.|..+|+|.|+|++..+.+.+++...+.|+.++|..|   .+++|+.
T Consensus       186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~  265 (910)
T KOG1539|consen  186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS  265 (910)
T ss_pred             EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC
Confidence            3567788889999999999999998  5689999999999999999999999999876799999999966   7888888


Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC----
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS----  226 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----  226 (434)
                      .|.+.+||++..+.+....                     ..|.+.|....|.+....+++++.|+.+++|=.+++    
T Consensus       266 ~G~m~~wDLe~kkl~~v~~---------------------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p  324 (910)
T KOG1539|consen  266 NGDMAFWDLEKKKLINVTR---------------------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP  324 (910)
T ss_pred             CceEEEEEcCCCeeeeeee---------------------ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence            8999999998776655443                     158899999999999999999999999998866543    


Q ss_pred             eeEEEcccCccCeEEEEEc-CCC-eEEEEeCCCeEEEEecccccCcc---------------------------------
Q 046226          227 KCIETIQAHSEPINALVVA-DDG-VLYSASDDATVRVWRRYFYSENQ---------------------------------  271 (434)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~---------------------------------  271 (434)
                      +.++.-.+|..+..|+.|. .++ .+.+++.|++++.+++......+                                 
T Consensus       325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~  404 (910)
T KOG1539|consen  325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE  404 (910)
T ss_pred             hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence            4556667899999999998 445 88899999988888753100000                                 


Q ss_pred             -----------------------------eeEEEE---EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226          272 -----------------------------LHTLIL---TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       272 -----------------------------~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  319 (434)
                                                   ......   .+......+++++.++.|++.+.|...|.|-+|++..+-...
T Consensus       405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~  484 (910)
T KOG1539|consen  405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK  484 (910)
T ss_pred             cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec
Confidence                                         000000   011122468899999999999999999999999997654444


Q ss_pred             cccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCc------------------------------------
Q 046226          320 QYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGR------------------------------------  361 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~------------------------------------  361 (434)
                      .+. .-..|..+|++++.++  +.+++++.+|.+.+||......                                    
T Consensus       485 sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~  563 (910)
T KOG1539|consen  485 SFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV  563 (910)
T ss_pred             ccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence            332 3358999999999985  5799999999999999875420                                    


Q ss_pred             --eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          362 --HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       362 --~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                        .+.++.+.+|.+.|++++|||+         |+.|++++.|++|++||+.++..+.
T Consensus       564 ~t~kvvR~f~gh~nritd~~FS~D---------grWlisasmD~tIr~wDlpt~~lID  612 (910)
T KOG1539|consen  564 VTRKVVREFWGHGNRITDMTFSPD---------GRWLISASMDSTIRTWDLPTGTLID  612 (910)
T ss_pred             hhhhhhHHhhccccceeeeEeCCC---------CcEEEEeecCCcEEEEeccCcceee
Confidence              0223456689999999999999         9999999999999999999988664

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=9.2e-26  Score=194.29  Aligned_cols=300  Identities=18%  Similarity=0.263  Sum_probs=221.9

Q ss_pred             EEEeec-cccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCC
Q 046226           86 SSVLKK-DGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWD  162 (434)
Q Consensus        86 ~~~~~h-~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~  162 (434)
                      ..+.++ ..-|.|++| .+.-++||..+|.|.||+..+.+..+....|.+.|.++..-.+ .|++|+.|..|..|| ..-
T Consensus       239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y  317 (626)
T KOG2106|consen  239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNY  317 (626)
T ss_pred             eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccc
Confidence            334443 357999999 7778999999999999999888877777799999999999887 888899999999999 222


Q ss_pred             CCceeeEeeeccCCCCceeEEEecc----------------------ccccCcCCCeEEEEEecCCCEEEEEecCCcEEE
Q 046226          163 NGVKHVKLATIPKTGGAVRNLIVGK----------------------DKMMKHMGPITSIAINVSDDTLYSASLDKTIKV  220 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  220 (434)
                      +..+.   .++|+..+.++.+..+.                      ...++|......++.+|+.+++++++.|+.+++
T Consensus       318 ~k~r~---~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~l  394 (626)
T KOG2106|consen  318 RKLRE---TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRL  394 (626)
T ss_pred             ccccc---ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEE
Confidence            22222   22333333332222111                      134579999999999999999999999999999


Q ss_pred             EEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEE
Q 046226          221 WRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG  300 (434)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  300 (434)
                      |+  ..+.+.+.. -..++.|+.|+|.|.++.|...|...+.|..      ....+..... ..+++.++|+|+|.+|+.
T Consensus       395 W~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e------~~~lv~~~~d-~~~ls~v~ysp~G~~lAv  464 (626)
T KOG2106|consen  395 WN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTE------TQDLVTIHTD-NEQLSVVRYSPDGAFLAV  464 (626)
T ss_pred             cc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecc------cceeEEEEec-CCceEEEEEcCCCCEEEE
Confidence            99  445554443 4568899999999999999999999999976      2333333333 789999999999999999


Q ss_pred             EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEE------------------------
Q 046226          301 GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVW------------------------  354 (434)
Q Consensus       301 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iw------------------------  354 (434)
                      |+.|+.|+||.+..............+  .+|+.+.|+  +++|.+-+.|-.|..|                        
T Consensus       465 gs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG  542 (626)
T KOG2106|consen  465 GSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLG  542 (626)
T ss_pred             ecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEE
Confidence            999999999998765554444333333  566666654  4466555555555555                        


Q ss_pred             ------------------------------------eccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEE
Q 046226          355 ------------------------------------AREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICT  398 (434)
Q Consensus       355 ------------------------------------d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  398 (434)
                                                          ...-........++.+|...|++++|..+         ...+++
T Consensus       543 F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~---------d~~li~  613 (626)
T KOG2106|consen  543 FEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCK---------DSHLIS  613 (626)
T ss_pred             EEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeC---------CceEEe
Confidence                                                32222112344566789999999999988         677777


Q ss_pred             eecCCeEEEEec
Q 046226          399 GSLDGVLKMWRV  410 (434)
Q Consensus       399 ~~~Dg~v~iw~~  410 (434)
                      .+.|..|..|++
T Consensus       614 tg~D~Si~qW~l  625 (626)
T KOG2106|consen  614 TGKDTSIMQWRL  625 (626)
T ss_pred             cCCCceEEEEEe
Confidence            779999999986

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=6.8e-27  Score=199.42  Aligned_cols=251  Identities=22%  Similarity=0.334  Sum_probs=202.4

Q ss_pred             cCCEEEEEeC-CCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226          101 GNGFIYTGSD-SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus       101 ~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      .+.+++++.. ...|.+|.+...........-.++|.+++-+|+  +|+.|+..|.|++|.+.++..+..+.        
T Consensus        49 ~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~--------  120 (476)
T KOG0646|consen   49 NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS--------  120 (476)
T ss_pred             chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH--------
Confidence            5567777655 348899998765555544445778999999987  55555589999999999988776663        


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC---------CCeeEEEcccCccCeEEEEEcCCC
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIR---------DSKCIETIQAHSEPINALVVADDG  248 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~  248 (434)
                                    +|...|+|+.|+-|+.+|++|+.||.|.+|++.         +-+++..|..|.-+|+++.+.+.+
T Consensus       121 --------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg  186 (476)
T KOG0646|consen  121 --------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG  186 (476)
T ss_pred             --------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence                          699999999999999999999999999999873         246788899999999999998775


Q ss_pred             ---eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc--------
Q 046226          249 ---VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA--------  317 (434)
Q Consensus       249 ---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------  317 (434)
                         ++++++.|.++++||+.      ....+.+.. ....+.+++++|.++.+++|+.+|.|.+.++.....        
T Consensus       187 ~~~rl~TaS~D~t~k~wdlS------~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k  259 (476)
T KOG0646|consen  187 TNARLYTASEDRTIKLWDLS------LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK  259 (476)
T ss_pred             ccceEEEecCCceEEEEEec------cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccc
Confidence               99999999999999997      333333332 346899999999999999999999999998764431        


Q ss_pred             ----cccccCcccCccc--ceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          318 ----QLQYGGALQGHTH--AVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       318 ----~~~~~~~~~~~~~--~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                          .......+.+|.+  .|+|++.  +|..|++|+.||.|+|||+.+.   ++++++..-.++|+.+.+.|-
T Consensus       260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  260 GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHhhhccccceeEeecc
Confidence                1222345668888  8999886  5899999999999999999987   788877767889999988543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=5.4e-27  Score=202.32  Aligned_cols=261  Identities=21%  Similarity=0.251  Sum_probs=195.1

Q ss_pred             eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc-eeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      .....+++|+..|.++++.|.  ++++|+.|..|++||+...... ..++...                  ......|++
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~------------------P~E~h~i~s  219 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ------------------PCETHQINS  219 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC------------------cccccccce
Confidence            344567889999999999987  9999999999999998754321 1221110                  135568999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCCCeeEE------------EcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecc
Q 046226          200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIE------------TIQAHSEPINALVVADDG--VLYSASDDATVRVWRRY  265 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~  265 (434)
                      ++|++.+..|++.+.....+|+|-...+.+.            ..++|...++|.+|+|..  .+++++.||++|+||+.
T Consensus       220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~  299 (641)
T KOG0772|consen  220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN  299 (641)
T ss_pred             eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence            9999999999999989999999975444332            235789999999999988  89999999999999987


Q ss_pred             cccCcceeEEEEE--ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCccc--ceEEEEee--C
Q 046226          266 FYSENQLHTLILT--LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH--AVMCLASV--A  339 (434)
Q Consensus       266 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~  339 (434)
                      ...  ...+.+..  ..+..-+++.++|++++++|++|+.||.|.+|+.+.......+ ..-..|..  .|+|+.|+  |
T Consensus       300 ~~k--~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~-~vk~AH~~g~~Itsi~FS~dg  376 (641)
T KOG0772|consen  300 NTK--SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM-KVKDAHLPGQDITSISFSYDG  376 (641)
T ss_pred             Cch--hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce-EeeeccCCCCceeEEEecccc
Confidence            222  22222222  2233457899999999999999999999999997543322221 23346666  88999885  8


Q ss_pred             CEEEEecCCCcEEEEeccCCCceeeEEEeec--cccceeEEEEeecccCCCCCCcccEEEEee------cCCeEEEEecC
Q 046226          340 NYVISGSADSTSRVWAREQDGRHTMLAVLVG--HRGPIRCAIAFLGRFGEETEDEYCTICTGS------LDGVLKMWRVT  411 (434)
Q Consensus       340 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~------~Dg~v~iw~~~  411 (434)
                      ++|++-+.|+++++||++..+  +++....+  ...+-+.++|+|+         .++|++|.      .-|.+.+||-.
T Consensus       377 ~~LlSRg~D~tLKvWDLrq~k--kpL~~~tgL~t~~~~tdc~FSPd---------~kli~TGtS~~~~~~~g~L~f~d~~  445 (641)
T KOG0772|consen  377 NYLLSRGFDDTLKVWDLRQFK--KPLNVRTGLPTPFPGTDCCFSPD---------DKLILTGTSAPNGMTAGTLFFFDRM  445 (641)
T ss_pred             chhhhccCCCceeeeeccccc--cchhhhcCCCccCCCCccccCCC---------ceEEEecccccCCCCCceEEEEecc
Confidence            899999999999999999865  34433333  3345678999999         88999885      45789999876


Q ss_pred             CCCc
Q 046226          412 RPKS  415 (434)
Q Consensus       412 ~~~~  415 (434)
                      +-..
T Consensus       446 t~d~  449 (641)
T KOG0772|consen  446 TLDT  449 (641)
T ss_pred             ceee
Confidence            5543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=7.7e-26  Score=183.39  Aligned_cols=247  Identities=16%  Similarity=0.205  Sum_probs=189.0

Q ss_pred             CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE
Q 046226          131 KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT  208 (434)
Q Consensus       131 ~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  208 (434)
                      ....|.+|.|+|.  .|+++++||++++||+........+                       .|..++.+++|.+ ...
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-----------------------~~~~plL~c~F~d-~~~   67 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-----------------------KHGAPLLDCAFAD-EST   67 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-----------------------ecCCceeeeeccC-Cce
Confidence            4678999999974  8888899999999999876444444                       4999999999975 668


Q ss_pred             EEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeE
Q 046226          209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVK  287 (434)
Q Consensus       209 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  287 (434)
                      +++|+.||.|+.+|+.+++. ..+..|..+|.||..++.. .+++|+.|++|++||.+.      ......+. ....|.
T Consensus        68 ~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~------~~~~~~~d-~~kkVy  139 (323)
T KOG1036|consen   68 IVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN------KVVVGTFD-QGKKVY  139 (323)
T ss_pred             EEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc------cccccccc-cCceEE
Confidence            99999999999999998775 4456699999999999765 999999999999999882      22222222 223666


Q ss_pred             EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCC-Cceee
Q 046226          288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQD-GRHTM  364 (434)
Q Consensus       288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~-~~~~~  364 (434)
                      ++..  .++.|++|+.|..|.+||++......+.  .-..-.-.+.|++.  ++.-++.++-||.|.+=.++.. .....
T Consensus       140 ~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~--reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk  215 (323)
T KOG1036|consen  140 CMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR--RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK  215 (323)
T ss_pred             EEec--cCCEEEEeecCceEEEEEcccccchhhh--ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence            6655  5789999999999999999876555432  12233345566655  4567888999999988666554 11133


Q ss_pred             EEEeecccc---------ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcccccccc
Q 046226          365 LAVLVGHRG---------PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNK  422 (434)
Q Consensus       365 ~~~~~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~  422 (434)
                      ...|+.|..         +|++++|+|-         ...|+|||.||.|.+||+.+.|++++....
T Consensus       216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~---------~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  216 KYAFKCHRLSEKDTEIIYPVNAIAFHPI---------HGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             ceeEEeeecccCCceEEEEeceeEeccc---------cceEEecCCCceEEEccCcchhhhhhccCC
Confidence            456666643         7999999998         789999999999999999999987765443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=6.5e-27  Score=189.61  Aligned_cols=291  Identities=16%  Similarity=0.258  Sum_probs=224.3

Q ss_pred             CCCCCCCCC-CCCcccccCCCCCCCCCCCCCccCCCCCCCccccee-----------------------eeEEEeecccc
Q 046226           39 TFPYSPPRF-SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----------------------CISSVLKKDGQ   94 (434)
Q Consensus        39 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~h~~~   94 (434)
                      .+.+.|++. ..-+..|+.+..+..+++++..+++++.|-.++.++                       .|++|..|.+.
T Consensus        95 ~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de  174 (430)
T KOG0640|consen   95 GSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE  174 (430)
T ss_pred             cCCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc
Confidence            333444443 346788999999999999999999999987766543                       47888999999


Q ss_pred             EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeecc--CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceee
Q 046226           95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLK--AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHV  168 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~  168 (434)
                      |+++.|  ....|++|+.|++|++||+..-...+.++  ....+|.++.|+|.  +|++|....++++||+++-++....
T Consensus       175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa  254 (430)
T KOG0640|consen  175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA  254 (430)
T ss_pred             ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence            999999  78999999999999999987643332222  24568999999996  8899999999999999876543332


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-Cc-cCeEEEEEcC
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-HS-EPINALVVAD  246 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~-~~v~~~~~~~  246 (434)
                      .    |.               .+|.+.|+++.+++.+++.++|+.||.|++||--+++|+.++.. |. ..|.+..|..
T Consensus       255 n----Pd---------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk  315 (430)
T KOG0640|consen  255 N----PD---------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK  315 (430)
T ss_pred             C----cc---------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence            1    11               26999999999999999999999999999999999999998864 54 4788899999


Q ss_pred             CC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccc-----ccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCcccccc
Q 046226          247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK-----YSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQL  319 (434)
Q Consensus       247 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~  319 (434)
                      ++ ++++.+.|..+++|.+.      ....+..+.+.     ..--+...|+....+++.-.+ .+.+.-||.++.....
T Consensus       316 n~kyiLsSG~DS~vkLWEi~------t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~  389 (430)
T KOG0640|consen  316 NGKYILSSGKDSTVKLWEIS------TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA  389 (430)
T ss_pred             CCeEEeecCCcceeeeeeec------CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence            99 99999999999999987      23333333322     111233456666667666554 5788999987655443


Q ss_pred             cccCcccCcccceEEEEee--CCEEEEecCCCcEEEEecc
Q 046226          320 QYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~  357 (434)
                      ..   .-+|.+.+.++.-+  +..+++|+.|..+|+|--+
T Consensus       390 l~---slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  390 LL---SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hc---ccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            32   23899999998766  4589999999999999644

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3.3e-26  Score=181.15  Aligned_cols=265  Identities=17%  Similarity=0.147  Sum_probs=224.9

Q ss_pred             CCcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeE-------EEeeccccEEEEEE---cCCEEEEEeCCCeEEEec
Q 046226           49 SPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCIS-------SVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWK  118 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd  118 (434)
                      +..++|...+.+..+.-++..+++++.++++..|+.-.       ...+|.+.|-.++|   ..++|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            56778888999999999999999999999988877632       35789999999999   788999999999999999


Q ss_pred             CCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCC
Q 046226          119 QPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGP  196 (434)
Q Consensus       119 ~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (434)
                      +..+++...+....+.+. +.|+|+  +++++..|..|.+.|.++.+.....                       .....
T Consensus        94 ~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-----------------------~~~~e  149 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-----------------------QFKFE  149 (313)
T ss_pred             eccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehh-----------------------cccce
Confidence            999999998876666555 567776  8999999999999998876555444                       25556


Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEE
Q 046226          197 ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTL  275 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~  275 (434)
                      +..++|+-++.+|+.....|+|.|......+++..++.|.....||.|+|+| ++++|+.|..+.+||+.      ....
T Consensus       150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~------ELiC  223 (313)
T KOG1407|consen  150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD------ELIC  223 (313)
T ss_pred             eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh------Hhhh
Confidence            8889999888888887778999999999999999999999999999999999 99999999999999987      3445


Q ss_pred             EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCC
Q 046226          276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSAD  348 (434)
Q Consensus       276 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d  348 (434)
                      ...+..+.-+|+.+.|+-+|++|++|++|..|-|=++.++....+.     .+.++...++|+++  +||-+++|
T Consensus       224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  224 ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecC
Confidence            5666778889999999999999999999999999988877766654     56678889999976  45555443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1e-25  Score=182.54  Aligned_cols=265  Identities=15%  Similarity=0.226  Sum_probs=199.6

Q ss_pred             eeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC----ceeEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEEee
Q 046226           89 LKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE----FTECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRVWR  158 (434)
Q Consensus        89 ~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~vwd  158 (434)
                      .+|.+-|.|+.|  .|+.+|||+.|++|+|||..+    ..+....+.|.+.|..+.|.+.    .+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            358999999999  799999999999999999643    5667778899999999999653    788999999999997


Q ss_pred             cCCCCCceeeEeeeccCCC-CceeEEEeccccccCcCCCeEEEEEecC--CCEEEEEecCCcEEEEEcCCC------eeE
Q 046226          159 STWDNGVKHVKLATIPKTG-GAVRNLIVGKDKMMKHMGPITSIAINVS--DDTLYSASLDKTIKVWRIRDS------KCI  229 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~------~~~  229 (434)
                      -......         ..+ ..++     ...+......|+++.|.|.  |-.|++++.||.++||+.-..      ...
T Consensus        90 E~~~~~~---------~~~~~Wv~-----~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq  155 (361)
T KOG2445|consen   90 EQEKSEE---------AHGRRWVR-----RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ  155 (361)
T ss_pred             ecccccc---------cccceeEE-----EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence            4211100         000 1111     1122357789999999985  778999999999999987542      222


Q ss_pred             EEcc-------cCccCeEEEEEcCCC----eEEEEeCC-----CeEEEEecccccCcceeEEEEEecccccCeEEEEEec
Q 046226          230 ETIQ-------AHSEPINALVVADDG----VLYSASDD-----ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL  293 (434)
Q Consensus       230 ~~~~-------~~~~~v~~~~~~~~~----~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  293 (434)
                      ..++       .+..+..|+.|++..    +|+.|+.+     +.+.||...  ........+..+..|..+|+.++|.|
T Consensus       156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~--e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN--ENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec--CCcceeeeehhcCCCCCcceeeeecc
Confidence            2232       356678899999765    56666655     478899765  33335556677889999999999999


Q ss_pred             C----CCEEEEEcCCCeEEEEEcCccc----------------ccccccCcccCcccceEEEEee--CCEEEEecCCCcE
Q 046226          294 D----DGLLYGGCTDGYIHYWHKGWFS----------------AQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTS  351 (434)
Q Consensus       294 ~----~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i  351 (434)
                      +    -..|++++.|| |+||.+....                ...+....+.+|.+.|..+.|+  |..|++.+.||.|
T Consensus       234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence            5    35799999999 9999986311                2233445678999999999997  8899999999999


Q ss_pred             EEEeccCCCceeeEEEeec
Q 046226          352 RVWAREQDGRHTMLAVLVG  370 (434)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~  370 (434)
                      |+|...-...+++...+..
T Consensus       313 RLWkany~n~~kC~sv~~~  331 (361)
T KOG2445|consen  313 RLWKANYNNLWKCTSVLKA  331 (361)
T ss_pred             eehhhhhhhhheeeeEEec
Confidence            9998877666677766655

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.9e-25  Score=171.05  Aligned_cols=241  Identities=21%  Similarity=0.248  Sum_probs=192.8

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCcee-----EeeccCCCccEEEEEEeCC------EEEEEEc-CCe
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTE-----CGRLKAKTSMVVAMEVSHD------RVYAAYG-DGK  153 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~~~~------~l~~~s~-dg~  153 (434)
                      -+.|.+.|+|.+|  .|++|+||+.|.+|++..++...+     -.++..|.+.|..++|-.+      .|++++. |..
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            4679999999999  899999999999999976543222     2346779999999999654      4444443 777


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  233 (434)
                      |++-|-..++....+.                      +|.+-|.++ ++-++-++++|+.|.+|++||++-..++.++.
T Consensus       165 iy~tdc~~g~~~~a~s----------------------ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~  221 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALS----------------------GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD  221 (350)
T ss_pred             EEEeecCCCCcceeec----------------------CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence            7777776665555442                      799999887 34568999999999999999999888888775


Q ss_pred             c--C-----ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226          234 A--H-----SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG  305 (434)
Q Consensus       234 ~--~-----~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  305 (434)
                      .  |     ...|.++++.|.| +|++|-.|....+||++      -...+..+..|...|.++.|+|...++++++.|.
T Consensus       222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir------g~r~iq~f~phsadir~vrfsp~a~yllt~syd~  295 (350)
T KOG0641|consen  222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR------GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM  295 (350)
T ss_pred             CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee------CCceeeeeCCCccceeEEEeCCCceEEEEecccc
Confidence            3  2     3578999999999 89999999999999998      4567778889999999999999999999999999


Q ss_pred             eEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEecc
Q 046226          306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWARE  357 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~  357 (434)
                      .|++-|+...-...........|...+..+.|.+.  -+++.+.|.++.+|-+.
T Consensus       296 ~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  296 KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999986543322222344567888888888865  68889999999999764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=5.9e-26  Score=202.54  Aligned_cols=320  Identities=20%  Similarity=0.272  Sum_probs=239.1

Q ss_pred             ceeeeEEEeeccccEEEEEE-----cCCEEEEEeCCCeEEEecCCCce---------------------eE---------
Q 046226           81 SYRCISSVLKKDGQILCIAV-----GNGFIYTGSDSNVIRIWKQPEFT---------------------EC---------  125 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~-----~~~~l~tg~~dg~i~iwd~~~~~---------------------~~---------  125 (434)
                      .++.+..+.||.+.|.+++|     +.-+||+++.|..||||.+.-+.                     ..         
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            67888999999999999999     24589999999999999753211                     11         


Q ss_pred             -eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc--eeeEeeeccC-CC--------------------Cc
Q 046226          126 -GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV--KHVKLATIPK-TG--------------------GA  179 (434)
Q Consensus       126 -~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~--~~~~~~~~~~-~~--------------------~~  179 (434)
                       ..+.+|++.|+++.|+|.  .|++++.|.++.+|.-.....+  ...++..... .+                    +.
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence             123489999999999998  7999999999999987655333  2333322221 00                    01


Q ss_pred             eeEEE-------eccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC----CeeEEEcccCccCeEEEEEcCCC
Q 046226          180 VRNLI-------VGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD----SKCIETIQAHSEPINALVVADDG  248 (434)
Q Consensus       180 ~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~  248 (434)
                      .+...       .......+|.+.|++++|+|.|.+|++.+.|.+-+++-.-.    ...+.+-+.|...++|+++-+..
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~  419 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED  419 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence            11111       11223458999999999999999999999999999986541    12344445688899999999845


Q ss_pred             -eEEEEeCCCeEEEEeccc------------------------------------c-----cCcc---------------
Q 046226          249 -VLYSASDDATVRVWRRYF------------------------------------Y-----SENQ---------------  271 (434)
Q Consensus       249 -~l~s~~~dg~i~iwd~~~------------------------------------~-----~~~~---------------  271 (434)
                       .+++|.....+|+|+...                                    .     .+..               
T Consensus       420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~  499 (764)
T KOG1063|consen  420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE  499 (764)
T ss_pred             ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence             999999999999997520                                    0     0000               


Q ss_pred             --------------eeEEEEEecccccCeEEEEEecCCCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccce
Q 046226          272 --------------LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAV  332 (434)
Q Consensus       272 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v  332 (434)
                                    .......+.+|...|.+++.+|+++++++++..     ..|++|+....    .....+.+|.-.|
T Consensus       500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W----~~~~~L~~HsLTV  575 (764)
T KOG1063|consen  500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW----LQVQELEGHSLTV  575 (764)
T ss_pred             ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch----hhhheecccceEE
Confidence                          001112456788899999999999999999864     46899986433    3334678999999


Q ss_pred             EEEEee--CCEEEEecCCCcEEEEeccCCCce-eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          333 MCLASV--ANYVISGSADSTSRVWAREQDGRH-TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       333 ~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      +.+.|+  +++|++.+.|.++.+|........ ......+.|..-|++..|+|+         +.+++|+|.|.+|++|.
T Consensus       576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd---------e~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD---------EKYFATASRDKKVKVWE  646 (764)
T ss_pred             EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc---------cceeEEecCCceEEEEe
Confidence            999986  679999999999999998654211 224457899999999999999         88999999999999999


Q ss_pred             cCCC
Q 046226          410 VTRP  413 (434)
Q Consensus       410 ~~~~  413 (434)
                      ....
T Consensus       647 ~~~~  650 (764)
T KOG1063|consen  647 EPDL  650 (764)
T ss_pred             ccCc
Confidence            9887

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=8.7e-27  Score=192.65  Aligned_cols=278  Identities=18%  Similarity=0.293  Sum_probs=217.4

Q ss_pred             CCCCcccccCCCCCC-CCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCC
Q 046226           47 FSSPISLHTSPLSSP-RHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        47 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~  120 (434)
                      +.-.+.+|..-+++. .+|.....+++++.|+-++.|+.     +.++..|.|.|..|+++.+.++++++|.+|+.|.++
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeecc
Confidence            344678999999886 45556688999999987776655     778999999999999977999999999999999875


Q ss_pred             CceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeE
Q 046226          121 EFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT  198 (434)
Q Consensus       121 ~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  198 (434)
                      . ....++.+ ...+..+.-+..  .+++++  ..|.|||......+..+..                      ....|.
T Consensus       138 ~-~p~~tilg-~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smsw----------------------G~Dti~  191 (433)
T KOG0268|consen  138 G-PPLHTILG-KSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSW----------------------GADSIS  191 (433)
T ss_pred             C-Ccceeeec-cccccccccccccccccccC--ceeeecccccCCccceeec----------------------CCCcee
Confidence            5 34555543 344566665543  445544  4599999887766666642                      566799


Q ss_pred             EEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226          199 SIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI  276 (434)
Q Consensus       199 ~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~  276 (434)
                      ++.|+|-. ..|++|..|+.|.+||++++.+++.+. -.-.-+.|+|+|.. .++++.+|..+..||++     ......
T Consensus       192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR-----~l~~p~  265 (433)
T KOG0268|consen  192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMR-----NLSRPL  265 (433)
T ss_pred             EEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhh-----hhcccc
Confidence            99999965 556777799999999999998877664 33455789999977 89999999999999998     566677


Q ss_pred             EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEE
Q 046226          277 LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVW  354 (434)
Q Consensus       277 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iw  354 (434)
                      ....+|.+.|.+++|+|.|+-+++|+.|.+|+||..+.....-.+..   ..-..|.|+.|+  .+++++|++|+.|++|
T Consensus       266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW  342 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---KRMQHVFCVKYSMDSKYIISGSDDGNVRLW  342 (433)
T ss_pred             hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---hhhheeeEEEEeccccEEEecCCCcceeee
Confidence            78889999999999999999999999999999999865443322211   122467888885  6799999999999999


Q ss_pred             eccCC
Q 046226          355 AREQD  359 (434)
Q Consensus       355 d~~~~  359 (434)
                      .....
T Consensus       343 ka~As  347 (433)
T KOG0268|consen  343 KAKAS  347 (433)
T ss_pred             ecchh
Confidence            86543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.7e-25  Score=204.46  Aligned_cols=263  Identities=16%  Similarity=0.191  Sum_probs=209.2

Q ss_pred             eccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc-eeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCce
Q 046226           90 KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF-TECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVK  166 (434)
Q Consensus        90 ~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~  166 (434)
                      .|.+.-+.++|  +|++|+|++.||.|++|+...- +....+..+...|.+++...+.+++++.+++|.+|.+..++.-.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~   90 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT   90 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence            58888999999  8999999999999999987665 55555555888999999999999999999999999987665443


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcC
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD  246 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  246 (434)
                      .+.                      ...-++++++|+.+|++++.|+.|-.|++.++.+......+++|.++|.++.++|
T Consensus        91 iL~----------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p  148 (933)
T KOG1274|consen   91 ILA----------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP  148 (933)
T ss_pred             eee----------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence            332                      2456799999999999999999999999999999999999999999999999999


Q ss_pred             CC-eEEEEeCCCeEEEEecccccCcceeEEEEE-eccc-ccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC
Q 046226          247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILT-LTAK-YSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG  323 (434)
Q Consensus       247 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  323 (434)
                      ++ +|++.+.||.|++||+...........+.. .... ...+..++|+|++..+++.+.|+.|++|+.........+..
T Consensus       149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~  228 (933)
T KOG1274|consen  149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD  228 (933)
T ss_pred             CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence            99 999999999999999873222111111111 1111 34677899999999999999999999999877666665543


Q ss_pred             cccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          324 ALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       324 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      .  .+...+.+++|+  |.|||+++.||.|.|||.++-..       ......|.+++|.|+
T Consensus       229 ~--~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------~~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  229 K--LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-------HEFKRAVCCEAWKPN  281 (933)
T ss_pred             c--ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-------ccccceeEEEecCCC
Confidence            3  333336666665  78999999999999999987311       223457888999888

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=1.9e-24  Score=186.30  Aligned_cols=339  Identities=14%  Similarity=0.226  Sum_probs=251.6

Q ss_pred             CCCCcccccCCCCCCCCCCCCCccCCCCCCC--------cccce-----eeeEEEeeccccEEEEEE----cCCEEEEE-
Q 046226           47 FSSPISLHTSPLSSPRHPFNPTAAAGSSSPE--------TSSSY-----RCISSVLKKDGQILCIAV----GNGFIYTG-  108 (434)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~~~~~h~~~v~~~~~----~~~~l~tg-  108 (434)
                      ..+-..+|...+.+....|+...++++-...        .++.|     ..+..+-.-+..|+|++|    .|.+|+.- 
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD  175 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD  175 (626)
T ss_pred             hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence            3456678888887776666666665433222        12223     334445456778999999    45565554 


Q ss_pred             -eCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226          109 -SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV  185 (434)
Q Consensus       109 -~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
                       +.+..+.|||.+.+......+.....|....|+|.  .++.....+.+.+|+.+.+...+...+...            
T Consensus       176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek------------  243 (626)
T KOG2106|consen  176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK------------  243 (626)
T ss_pred             CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc------------
Confidence             33558899999999888888888888999999995  677777789999999887766555433221            


Q ss_pred             ccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecc
Q 046226          186 GKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRY  265 (434)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~  265 (434)
                            .....|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.|++|+.|..|..||-.
T Consensus       244 ------~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~  316 (626)
T KOG2106|consen  244 ------REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN  316 (626)
T ss_pred             ------ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccc
Confidence                  1236799999998876 778999999999999888887777799999999999999988899999999999832


Q ss_pred             cccCc----------------------------------ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE
Q 046226          266 FYSEN----------------------------------QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH  311 (434)
Q Consensus       266 ~~~~~----------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  311 (434)
                      .....                                  -.........+|......++.+|+.+.+++++.|+.+++|+
T Consensus       317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence            10000                                  00011123446677788899999999999999999999998


Q ss_pred             cCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCC
Q 046226          312 KGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEET  389 (434)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  389 (434)
                          ..+.+....   -..++.|+.|+  | .++.|+..|...+.|.++.   ..+..-.. ..+++++.|+|+      
T Consensus       397 ----~~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v~ysp~------  458 (626)
T KOG2106|consen  397 ----DHKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVVRYSPD------  458 (626)
T ss_pred             ----CCceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEEEEcCC------
Confidence                223232222   22355666665  5 9999999999999999984   44444444 889999999999      


Q ss_pred             CCcccEEEEeecCCeEEEEecCCCCccccccccccC
Q 046226          390 EDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNG  425 (434)
Q Consensus       390 ~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~~~g  425 (434)
                         |.+||.|+.|+.|+||.+...........+..|
T Consensus       459 ---G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g  491 (626)
T KOG2106|consen  459 ---GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG  491 (626)
T ss_pred             ---CCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence               999999999999999999988776666666555

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=6.2e-25  Score=195.71  Aligned_cols=276  Identities=16%  Similarity=0.231  Sum_probs=226.1

Q ss_pred             CCCCCCCCCCCCCccCCCCCCCcccceeee------EEEeec-cccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEee
Q 046226           56 SPLSSPRHPFNPTAAAGSSSPETSSSYRCI------SSVLKK-DGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGR  127 (434)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~h-~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~  127 (434)
                      +++.+..++.+...++.+..++++..|+..      ..+.++ ++.|.+++| ++..|++.+.+|.|.-||+.+++....
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~  105 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYN  105 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEE
Confidence            446666677777778888888888877763      445554 568999999 799999999999999999999999999


Q ss_pred             ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC
Q 046226          128 LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS  205 (434)
Q Consensus       128 ~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  205 (434)
                      +....+.|++++.+|.  .++.|+.||.+..+++..+.......                    +....+.|.+++|+|+
T Consensus       106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~--------------------l~rq~sRvLslsw~~~  165 (691)
T KOG2048|consen  106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS--------------------LMRQKSRVLSLSWNPT  165 (691)
T ss_pred             ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee--------------------cccccceEEEEEecCC
Confidence            9999999999999985  88899999977777765443322221                    1235689999999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCCeeEEEcc-------c-CccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKCIETIQ-------A-HSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  277 (434)
                      +..+++|+.||.|++||+.++..+....       . ...-|.++.+-.++.|++|..-|.|.+||..      ...++.
T Consensus       166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~------~gTLiq  239 (691)
T KOG2048|consen  166 GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSI------FGTLIQ  239 (691)
T ss_pred             ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEccc------Ccchhh
Confidence            9999999999999999999987766221       1 2335778888888899999999999999976      566777


Q ss_pred             EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEecc
Q 046226          278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWARE  357 (434)
Q Consensus       278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~  357 (434)
                      ....|...|.+++..++++++++++.|+.|..|........+........|...|.+++..+..+++|+.|..+.+-..+
T Consensus       240 S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  240 SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSR  319 (691)
T ss_pred             hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcccc
Confidence            78889999999999999999999999999999988766554555556678888999999998899999999888776544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=197.93  Aligned_cols=342  Identities=15%  Similarity=0.188  Sum_probs=255.9

Q ss_pred             CCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCC-EEEEEeCCCeEEEe
Q 046226           46 RFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNG-FIYTGSDSNVIRIW  117 (434)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~-~l~tg~~dg~i~iw  117 (434)
                      +.....+.+.+.+++...++--..++.+-.++.+-.++.     +-+|+.-.+.|+.++|  ||+ ++++|+..|.+.+|
T Consensus       193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w  272 (910)
T KOG1539|consen  193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW  272 (910)
T ss_pred             cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence            344455566677777766666777777777777555443     5566655699999999  555 77888888999999


Q ss_pred             cCCCceeEeecc-CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCcee--------------eEeee--------
Q 046226          118 KQPEFTECGRLK-AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKH--------------VKLAT--------  172 (434)
Q Consensus       118 d~~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~--------------~~~~~--------  172 (434)
                      |++..+.+..+. .|.+.|....|-+.  .+++++.|+.+++|-.++++....              ++...        
T Consensus       273 DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils  352 (910)
T KOG1539|consen  273 DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS  352 (910)
T ss_pred             EcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence            999988877765 78899999999887  888999999999996653332100              00000        


Q ss_pred             --------------------c-----cCC----C---------CceeEEE------------------------------
Q 046226          173 --------------------I-----PKT----G---------GAVRNLI------------------------------  184 (434)
Q Consensus       173 --------------------~-----~~~----~---------~~~~~~~------------------------------  184 (434)
                                          .     ...    +         ..+..+.                              
T Consensus       353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~  432 (910)
T KOG1539|consen  353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK  432 (910)
T ss_pred             cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence                                0     000    0         0000000                              


Q ss_pred             ------eccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc---ccCccCeEEEEEcCCC-eEEEEe
Q 046226          185 ------VGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI---QAHSEPINALVVADDG-VLYSAS  254 (434)
Q Consensus       185 ------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~s~~  254 (434)
                            .....+......+++++.++.|++.+.|+..|.|-+|++++|-....+   ..|..+|+.++...-+ .+++++
T Consensus       433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~  512 (910)
T KOG1539|consen  433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG  512 (910)
T ss_pred             ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc
Confidence                  000011223367899999999999999999999999999999888888   5799999999998777 899999


Q ss_pred             CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEE
Q 046226          255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC  334 (434)
Q Consensus       255 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  334 (434)
                      .+|.+.+||..      ...+...+. -...+..+.++.....++.+..|-.|+++|..    ..+....+.+|.+.|++
T Consensus       513 ~~Gilkfw~f~------~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~----t~kvvR~f~gh~nritd  581 (910)
T KOG1539|consen  513 ADGILKFWDFK------KKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVV----TRKVVREFWGHGNRITD  581 (910)
T ss_pred             CcceEEEEecC------Ccceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEch----hhhhhHHhhccccceee
Confidence            99999999987      222332322 33567888888888899999999999999974    33445577899999999


Q ss_pred             EEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-CeEEEEecC
Q 046226          335 LASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-GVLKMWRVT  411 (434)
Q Consensus       335 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-g~v~iw~~~  411 (434)
                      ++|+  |++|++++.|++|++||+.++   .++-.+. -..+.+.+.|+|+         |++|||...| .-|++|.-.
T Consensus       582 ~~FS~DgrWlisasmD~tIr~wDlpt~---~lID~~~-vd~~~~sls~SPn---------gD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  582 MTFSPDGRWLISASMDSTIRTWDLPTG---TLIDGLL-VDSPCTSLSFSPN---------GDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             eEeCCCCcEEEEeecCCcEEEEeccCc---ceeeeEe-cCCcceeeEECCC---------CCEEEEEEecCceEEEEEch
Confidence            9986  779999999999999999998   5554442 3678899999999         9999999999 679999744

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.5e-25  Score=208.59  Aligned_cols=272  Identities=17%  Similarity=0.229  Sum_probs=216.1

Q ss_pred             CCCCCCCCCCCCccCCCC--CCCccc-----------------ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEE
Q 046226           57 PLSSPRHPFNPTAAAGSS--SPETSS-----------------SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIR  115 (434)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~--~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~  115 (434)
                      .+++....+++..+++++  .|....                 .-+.+.+...|.+.|+|+.|  ||.+||+|++|+.|.
T Consensus        15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~   94 (942)
T KOG0973|consen   15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM   94 (942)
T ss_pred             eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence            466777778888888888  432211                 23345667889999999999  999999999999999


Q ss_pred             EecCCC------------------ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccC
Q 046226          116 IWKQPE------------------FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPK  175 (434)
Q Consensus       116 iwd~~~------------------~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (434)
                      ||+...                  .+.+..+.+|...|.+++|+|+  ++++++.|++|.+|+..+.+.+..++      
T Consensus        95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~------  168 (942)
T KOG0973|consen   95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR------  168 (942)
T ss_pred             EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee------
Confidence            998652                  3466778899999999999998  89999999999999998776555553      


Q ss_pred             CCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc------cCeEEEEEcCCC-
Q 046226          176 TGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS------EPINALVVADDG-  248 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~-  248 (434)
                                      +|.+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+.      ..+..+.|+||| 
T Consensus       169 ----------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~  232 (942)
T KOG0973|consen  169 ----------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH  232 (942)
T ss_pred             ----------------cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence                            799999999999999999999999999999988877777766543      367889999999 


Q ss_pred             eEEEEe----CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-----CC------------EEEEEcCCCeE
Q 046226          249 VLYSAS----DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-----DG------------LLYGGCTDGYI  307 (434)
Q Consensus       249 ~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~dg~i  307 (434)
                      +|++..    .-..+.|.+..      .+.....+-+|..++.++.|+|.     .+            .+++|+.|+.|
T Consensus       233 ~las~nA~n~~~~~~~IieR~------tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl  306 (942)
T KOG0973|consen  233 HLASPNAVNGGKSTIAIIERG------TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL  306 (942)
T ss_pred             eecchhhccCCcceeEEEecC------CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence            777653    23457777543      66677788899999999999981     11            68899999999


Q ss_pred             EEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          308 HYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       308 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      .||.....++.... .  .-....|.+|+|+  |-.|++++.||+|.++.++..
T Consensus       307 SVW~T~~~RPl~vi-~--~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  307 SVWNTALPRPLFVI-H--NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEEecCCCCchhhh-h--hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            99997443333222 2  2234579999997  679999999999999998753

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.8e-27  Score=209.98  Aligned_cols=234  Identities=16%  Similarity=0.221  Sum_probs=189.3

Q ss_pred             EEEEE---cCCEEEEEeCCCeEEEecCCC---ceeEeeccCCCccEEEEEEeC---CEEEEEEcCCeEEEeecCCCCCce
Q 046226           96 LCIAV---GNGFIYTGSDSNVIRIWKQPE---FTECGRLKAKTSMVVAMEVSH---DRVYAAYGDGKIRVWRSTWDNGVK  166 (434)
Q Consensus        96 ~~~~~---~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~---~~l~~~s~dg~i~vwd~~~~~~~~  166 (434)
                      ..+.|   ..++|||++..|.|.+||+..   .+.+..+..|+..++++.|++   +.|++|+.||.|++||++..+...
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~  170 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS  170 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence            34555   789999999999999999987   566678899999999999986   499999999999999998776655


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEEEEE
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVV  244 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~  244 (434)
                      .+.                      +....|++|+|+| .+..|+++.+.|.+.+||++.. ++...+.+|.++|.|+.|
T Consensus       171 t~~----------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw  228 (839)
T KOG0269|consen  171 TFR----------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW  228 (839)
T ss_pred             ccc----------------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence            553                      5778899999998 4788999999999999999864 577788899999999999


Q ss_pred             cCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE-EEEEcC--CCeEEEEEcCccccccc
Q 046226          245 ADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL-LYGGCT--DGYIHYWHKGWFSAQLQ  320 (434)
Q Consensus       245 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~--dg~i~i~d~~~~~~~~~  320 (434)
                      +|++ +|++||.|+.|+|||+.......    ...+ ....++.++.|-|...+ |++++.  |-.|+|||++.   +..
T Consensus       229 hPnr~~lATGGRDK~vkiWd~t~~~~~~----~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR---PYI  300 (839)
T KOG0269|consen  229 HPNREWLATGGRDKMVKIWDMTDSRAKP----KHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR---PYI  300 (839)
T ss_pred             cCCCceeeecCCCccEEEEeccCCCccc----eeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeecc---ccc
Confidence            9988 99999999999999987222111    1111 13368999999997654 555543  77999999964   334


Q ss_pred             ccCcccCcccceEEEEeeC---CEEEEecCCCcEEEEeccCC
Q 046226          321 YGGALQGHTHAVMCLASVA---NYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ....+..|...++.++|.+   ..+.+++.||+|..-.+++.
T Consensus       301 P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  301 PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             cceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            4457788999999999975   38999999999877666654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.2e-23  Score=187.67  Aligned_cols=283  Identities=17%  Similarity=0.195  Sum_probs=221.9

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc-eeEeeccCC-CccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCc
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF-TECGRLKAK-TSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGV  165 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~-~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~  165 (434)
                      -..+|.||||  +.+.||.+-.||.|.||++... -+...+.++ ...|.+++|.++ +|++.+.+|.|.-||+.+.+..
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence            4678999999  7788999999999999999763 333444444 568999999965 9999999999999999877766


Q ss_pred             eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE--EcccCccCeEEEE
Q 046226          166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE--TIQAHSEPINALV  243 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~  243 (434)
                      ....                      ...+.|++++.+|.+..++.|++||.++.++...++...  .+...++.|.++.
T Consensus       104 ~~~d----------------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls  161 (691)
T KOG2048|consen  104 YNID----------------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS  161 (691)
T ss_pred             EEec----------------------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence            6553                      467889999999999999999999988888887776443  3445678999999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc----cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226          244 VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA----KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  318 (434)
                      |++++ .+++|+.||.|++||....+  ........+..    ...-|.++.+-. ...|++|...|+|.+||..    .
T Consensus       162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~--t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~----~  234 (691)
T KOG2048|consen  162 WNPTGTKIAGGSIDGVIRIWDVKSGQ--TLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSI----F  234 (691)
T ss_pred             ecCCccEEEecccCceEEEEEcCCCc--eEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEccc----C
Confidence            99999 79999999999999987222  12211111111    223466777764 4679999999999999964    3


Q ss_pred             ccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCc-eeeEEEeeccccceeEEEEeecccCCCCCCcccE
Q 046226          319 LQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGR-HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT  395 (434)
Q Consensus       319 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  395 (434)
                      ..+.+....|...|.|++.+  ++++++++.|+.|.-|...+... +........|...|.+++..++           .
T Consensus       235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-----------~  303 (691)
T KOG2048|consen  235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-----------A  303 (691)
T ss_pred             cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-----------e
Confidence            44455667889999999885  56999999999999998877643 4455566788899999999965           8


Q ss_pred             EEEeecCCeEEEEecCCC
Q 046226          396 ICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       396 l~s~~~Dg~v~iw~~~~~  413 (434)
                      |++||.|+.+.+=.....
T Consensus       304 l~sgG~d~~l~i~~s~~~  321 (691)
T KOG2048|consen  304 LISGGRDFTLAICSSREF  321 (691)
T ss_pred             EEecceeeEEEEcccccc
Confidence            999999999998776653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=7e-25  Score=196.46  Aligned_cols=296  Identities=19%  Similarity=0.232  Sum_probs=215.1

Q ss_pred             cEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccC-C-----------------------CccEEEEEEeCC--EEEE
Q 046226           94 QILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKA-K-----------------------TSMVVAMEVSHD--RVYA  147 (434)
Q Consensus        94 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~-----------------------~~~v~~l~~~~~--~l~~  147 (434)
                      ...|++...+++++|+.+|.|++|+.++.....++.. |                       -....++.|++.  .|.+
T Consensus       262 nAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klsc  341 (1080)
T KOG1408|consen  262 NANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSC  341 (1080)
T ss_pred             ccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEE
Confidence            3467888999999999999999999877554444321 0                       012356678764  7888


Q ss_pred             EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-----------CCEEEEEecCC
Q 046226          148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-----------DDTLYSASLDK  216 (434)
Q Consensus       148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~s~~~dg  216 (434)
                      ...|..++|||++.-+.+......                   .-|..-|+++.--|-           ...|.+++.|+
T Consensus       342 VYndhSlYvWDvrD~~kvgk~~s~-------------------lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~  402 (1080)
T KOG1408|consen  342 VYNDHSLYVWDVRDVNKVGKCSSM-------------------LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG  402 (1080)
T ss_pred             EEcCceEEEEeccccccccceeee-------------------eeccceeeeeccccccccCcccccCCccceeEecCCC
Confidence            899999999999876554433211                   136666666655441           23589999999


Q ss_pred             cEEEEEcCCCeeEEEc-------------------------------------ccCccCeEEEEEcCCC-eEEEEeCCCe
Q 046226          217 TIKVWRIRDSKCIETI-------------------------------------QAHSEPINALVVADDG-VLYSASDDAT  258 (434)
Q Consensus       217 ~i~vwd~~~~~~~~~~-------------------------------------~~~~~~v~~~~~~~~~-~l~s~~~dg~  258 (434)
                      +|++||++.+..-..+                                     ......+.+++++|++ +|++|..-|.
T Consensus       403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn  482 (1080)
T KOG1408|consen  403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN  482 (1080)
T ss_pred             cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence            9999999753110000                                     0123478999999999 9999999999


Q ss_pred             EEEEecccccCcceeEEEEEecccccCeEEEEEec---CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce---
Q 046226          259 VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL---DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV---  332 (434)
Q Consensus       259 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v---  332 (434)
                      +++||+.      .......+..|+..|.++.|+.   ..++|++++.|.-|+|||+..   ...+.+++.+|...|   
T Consensus       483 lrVy~Lq------~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r---ny~l~qtld~HSssITsv  553 (1080)
T KOG1408|consen  483 LRVYDLQ------ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR---NYDLVQTLDGHSSSITSV  553 (1080)
T ss_pred             eEEEEeh------hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc---ccchhhhhcccccceeEE
Confidence            9999987      4445667788999999999986   357899999999999999743   222223333333333   


Q ss_pred             ----------------------------------------------EEEEeeC--CEEEEecCCCcEEEEeccCCCceee
Q 046226          333 ----------------------------------------------MCLASVA--NYVISGSADSTSRVWAREQDGRHTM  364 (434)
Q Consensus       333 ----------------------------------------------~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~  364 (434)
                                                                    ..|+.++  +++++++.|..|+|||+++++..+.
T Consensus       554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~  633 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS  633 (1080)
T ss_pred             EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence                                                          4444443  4789999999999999999955444


Q ss_pred             EEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccccccccccCceeEe
Q 046226          365 LAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGHEYFE  430 (434)
Q Consensus       365 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~~~g~~~~~  430 (434)
                      +..-.+|.+....+...|.         |-||++.+.|.++.++|+.+++.    +....||...+
T Consensus       634 FKgs~~~eG~lIKv~lDPS---------giY~atScsdktl~~~Df~sgEc----vA~m~GHsE~V  686 (1080)
T KOG1408|consen  634 FKGSRDHEGDLIKVILDPS---------GIYLATSCSDKTLCFVDFVSGEC----VAQMTGHSEAV  686 (1080)
T ss_pred             ecccccCCCceEEEEECCC---------ccEEEEeecCCceEEEEeccchh----hhhhcCcchhe
Confidence            5555567778888888888         99999999999999999999985    45556666544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.4e-26  Score=205.82  Aligned_cols=283  Identities=18%  Similarity=0.213  Sum_probs=213.9

Q ss_pred             EEEEEE--cCCEEEEEeCCCeEEEecCCC----ceeEeeccCCC---ccEEEEEEeC---CEEEEEEcCCeEEEeecCCC
Q 046226           95 ILCIAV--GNGFIYTGSDSNVIRIWKQPE----FTECGRLKAKT---SMVVAMEVSH---DRVYAAYGDGKIRVWRSTWD  162 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~~~---~~v~~l~~~~---~~l~~~s~dg~i~vwd~~~~  162 (434)
                      ..+|+.  +-..|+.++. ..++||.+..    .++...++...   ..+..+.|..   ++|++++..|.|.+||+...
T Consensus        42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~  120 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS  120 (839)
T ss_pred             cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence            445555  4455555554 4677776543    12222222211   2345566764   48999999999999999763


Q ss_pred             CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226          163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA  241 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  241 (434)
                      ...+.+.                   .+..|...++++.|++. ..+|++|+.||+|++||++..+...++.+....|++
T Consensus       121 ~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD  181 (839)
T KOG0269|consen  121 IRNKLLT-------------------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD  181 (839)
T ss_pred             ccchhhh-------------------HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhc
Confidence            1111110                   12369999999999985 567889999999999999999999999999999999


Q ss_pred             EEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226          242 LVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       242 ~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  319 (434)
                      +.|+|..  .++++.+.|.+.+||++     +.......+..|.++|.++.|+|++.+||+|+.|+.|+|||+.......
T Consensus       182 V~fsp~~~~~F~s~~dsG~lqlWDlR-----qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~  256 (839)
T KOG0269|consen  182 VKFSPGYGNKFASIHDSGYLQLWDLR-----QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP  256 (839)
T ss_pred             eeeccCCCceEEEecCCceEEEeecc-----CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence            9999865  89999999999999999     4556667788999999999999999999999999999999987543322


Q ss_pred             cccCcccCcccceEEEEeeC---CEEEEec--CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          320 QYGGALQGHTHAVMCLASVA---NYVISGS--ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~~---~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                      ..  .+ ....+|.++.|-+   .+|++++  .|-.|+|||++-.  ..+...+..|...++.++|....        ..
T Consensus       257 ~~--tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d--------~~  323 (839)
T KOG0269|consen  257 KH--TI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGD--------RI  323 (839)
T ss_pred             ee--EE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCC--------ce
Confidence            21  11 2335778888864   3777776  4789999999864  46788899999999999997642        56


Q ss_pred             EEEEeecCCeEEEEecCCCCc
Q 046226          395 TICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      .+.+++.||+|..-.+++...
T Consensus       324 ~l~s~sKD~tv~qh~~knat~  344 (839)
T KOG0269|consen  324 NLWSCSKDGTVLQHLFKNATT  344 (839)
T ss_pred             eeEeecCccHHHHhhhhcccC
Confidence            899999999998877776644

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=1.5e-24  Score=184.78  Aligned_cols=298  Identities=15%  Similarity=0.184  Sum_probs=218.8

Q ss_pred             cceeeeEEEeeccccEEEEEE----cCCEEEEEeCCCeEEEecCCC----ceeEeeccCCCccEEEEEEeCC---EEEEE
Q 046226           80 SSYRCISSVLKKDGQILCIAV----GNGFIYTGSDSNVIRIWKQPE----FTECGRLKAKTSMVVAMEVSHD---RVYAA  148 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~~---~l~~~  148 (434)
                      .........+-|.++|++++|    +-+++|+|..-|+|-+||+.+    ...+..+..|..+|.+|.|+|.   .+++.
T Consensus       174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence            344445567789999999999    348999999999999999942    3345567789999999999995   89999


Q ss_pred             EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee
Q 046226          149 YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC  228 (434)
Q Consensus       149 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  228 (434)
                      +.||+|++-|++.......+..                    ......+..+.|+.+...++.+..=|...+||++++..
T Consensus       254 SyDGtiR~~D~~~~i~e~v~s~--------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s  313 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEVLSL--------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS  313 (498)
T ss_pred             ccCceeeeeeecchhhHHHhhc--------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCc
Confidence            9999999999875533222211                    01334567788888888888888888999999998654


Q ss_pred             -EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226          229 -IETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG  305 (434)
Q Consensus       229 -~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  305 (434)
                       ...+..|...|..++++|..  +|++++.|++.+|||++.......  +......|...|.+..|+|.+..|++.+.|.
T Consensus       314 ~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~  391 (498)
T KOG4328|consen  314 EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN  391 (498)
T ss_pred             cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCC
Confidence             66777788999999999988  999999999999999995444433  2455667889999999999888899999999


Q ss_pred             eEEEEEcCcccccccccCccc---Cccc--ceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecccc-ceeE
Q 046226          306 YIHYWHKGWFSAQLQYGGALQ---GHTH--AVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG-PIRC  377 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~---~~~~--~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~  377 (434)
                      .|+|||..-..........+.   .+..  ......|+  .+++++|-.-..|-|+|-..+   +.+..+..-.. .|.+
T Consensus       392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~---q~v~el~~P~~~tI~~  468 (498)
T KOG4328|consen  392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG---QMVCELHDPESSTIPS  468 (498)
T ss_pred             ceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC---EEeeeccCcccccccc
Confidence            999999742112222111111   1111  12233454  558999999899999998876   65665433322 4544


Q ss_pred             -EEEeecccCCCCCCccc-EEEEeecCCeEEEEecC
Q 046226          378 -AIAFLGRFGEETEDEYC-TICTGSLDGVLKMWRVT  411 (434)
Q Consensus       378 -~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~iw~~~  411 (434)
                       ..|+|.         +. +++-++.-|.|+||.-+
T Consensus       469 vn~~HP~---------~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  469 VNEFHPM---------RDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             ceeeccc---------ccceeccCCccceEEEEecC
Confidence             577887         55 45555567889988644

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=3.3e-23  Score=184.50  Aligned_cols=271  Identities=11%  Similarity=0.044  Sum_probs=187.3

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EE-EEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RV-YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG  178 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (434)
                      ++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+  .+ ++++.++.|++||..+++....+.         
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------   70 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---------   70 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---------
Confidence            46788999999999999999988888876544 678999987  45 456678999999987654433221         


Q ss_pred             ceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCC
Q 046226          179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDD  256 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d  256 (434)
                                   .+ ..+..++|+|+++.++++ ..++.|++||+.+.+.+..+.. ...+.+++++|++ .++++..+
T Consensus        71 -------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~  135 (300)
T TIGR03866        71 -------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSET  135 (300)
T ss_pred             -------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecC
Confidence                         12 234678899999977655 5689999999998887777753 3346889999999 77777766


Q ss_pred             C-eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCccc-Ccc--cc
Q 046226          257 A-TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQ-GHT--HA  331 (434)
Q Consensus       257 g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~-~~~--~~  331 (434)
                      + .+.+||...      ........ ....+..++|++++++|+++ ..++.|++||+........+..... .+.  ..
T Consensus       136 ~~~~~~~d~~~------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  208 (300)
T TIGR03866       136 TNMAHFIDTKT------YEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ  208 (300)
T ss_pred             CCeEEEEeCCC------CeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence            4 567778751      11111111 22345779999999988655 4699999999976543222111100 011  11


Q ss_pred             eEEEEe--eCCEE-EEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe-ecCCeEEE
Q 046226          332 VMCLAS--VANYV-ISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG-SLDGVLKM  407 (434)
Q Consensus       332 v~~~~~--~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~Dg~v~i  407 (434)
                      ...+.+  +++++ ++.+.++.+.+||++++   +.+..+ .+...+.+++|+|+         +++|+++ +.+|.|++
T Consensus       209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~-~~~~~~~~~~~~~~---------g~~l~~~~~~~~~i~v  275 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYL-LVGQRVWQLAFTPD---------EKYLLTTNGVSNDVSV  275 (300)
T ss_pred             ccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEE-EeCCCcceEEECCC---------CCEEEEEcCCCCeEEE
Confidence            233444  46664 44456778999999876   333333 24457889999999         8888876 56999999


Q ss_pred             EecCCCCccc
Q 046226          408 WRVTRPKSSC  417 (434)
Q Consensus       408 w~~~~~~~~~  417 (434)
                      ||+.+++.+.
T Consensus       276 ~d~~~~~~~~  285 (300)
T TIGR03866       276 IDVAALKVIK  285 (300)
T ss_pred             EECCCCcEEE
Confidence            9999887644

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.7e-26  Score=206.87  Aligned_cols=249  Identities=20%  Similarity=0.313  Sum_probs=208.8

Q ss_pred             EEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC--CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeE
Q 046226          105 IYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH--DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN  182 (434)
Q Consensus       105 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (434)
                      +.....+-.+++||...      +..|...|.++..-.  ..+++|+.|..+-+|.+.....+..+              
T Consensus         7 ~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~--------------   66 (825)
T KOG0267|consen    7 LMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL--------------   66 (825)
T ss_pred             cceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee--------------
Confidence            34445556677887643      446777788877633  37888888999999988765554443              


Q ss_pred             EEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEE
Q 046226          183 LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRV  261 (434)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~i  261 (434)
                              .+|..+|.++.|+++..+|++|+.+|+|++||++.++.++++.+|...+.++.|+|-+ +.+.|+.|+.+++
T Consensus        67 --------~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i  138 (825)
T KOG0267|consen   67 --------TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKI  138 (825)
T ss_pred             --------eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccccee
Confidence                    3799999999999999999999999999999999999999999999999999999999 8899999999999


Q ss_pred             EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-  340 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  340 (434)
                      ||++      ...+...+.+|...+..+.|+|+|++++.|++|..++|||+.    ..++...+..|...+..+.+++. 
T Consensus       139 wD~R------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~----agk~~~ef~~~e~~v~sle~hp~e  208 (825)
T KOG0267|consen  139 WDIR------KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT----AGKLSKEFKSHEGKVQSLEFHPLE  208 (825)
T ss_pred             hhhh------ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc----ccccccccccccccccccccCchh
Confidence            9988      455667777899999999999999999999999999999975    34455677889999999998754 


Q ss_pred             -EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC
Q 046226          341 -YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG  403 (434)
Q Consensus       341 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg  403 (434)
                       ++++|+.|+++++||+++-   +.+...+.....|.+.+|.|+         +..+.+|..+.
T Consensus       209 ~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~---------~~~~~~G~q~s  260 (825)
T KOG0267|consen  209 VLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPD---------GKIVLSGEQIS  260 (825)
T ss_pred             hhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCC---------ceeeecCchhh
Confidence             7889999999999999975   677777777889999999999         77777776553

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.9e-24  Score=181.31  Aligned_cols=281  Identities=10%  Similarity=0.139  Sum_probs=216.0

Q ss_pred             cccEEEEEE--cCCEEEEEeCCCeEEEecCCC--ceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCC
Q 046226           92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQPE--FTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNG  164 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~  164 (434)
                      .+.|+++.|  ...+|++|+.||+++||.+..  ...+..+.-...+|.+..|.|+   .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            578999999  788999999999999997743  4456666667889999999997   688888899999999976654


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCc-CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKH-MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV  243 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  243 (434)
                      .+.-...                    ++ ...+.....++++++|+..+..|.|.+....+++.+..++ -.+.|..++
T Consensus       293 ~k~~~~~--------------------g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~  351 (514)
T KOG2055|consen  293 TKLKPPY--------------------GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT  351 (514)
T ss_pred             ccccCCC--------------------CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence            4333211                    22 2356777889999999999999999999999999988887 567899999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccc-ccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc--ccc
Q 046226          244 VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK-YSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS--AQL  319 (434)
Q Consensus       244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~  319 (434)
                      |+.++ .|++++.+|.|.+||++      .......+... .-.-++++.++++.+||+|+..|.|.|||.....  ...
T Consensus       352 fsSdsk~l~~~~~~GeV~v~nl~------~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P  425 (514)
T KOG2055|consen  352 FSSDSKELLASGGTGEVYVWNLR------QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP  425 (514)
T ss_pred             EecCCcEEEEEcCCceEEEEecC------CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence            99999 88888999999999998      22333333222 1234678888999999999999999999965322  222


Q ss_pred             cccCcccCcccceEEEEeeC--CEEEEec--CCCcEEEEeccCCCceeeEEEee---ccccceeEEEEeecccCCCCCCc
Q 046226          320 QYGGALQGHTHAVMCLASVA--NYVISGS--ADSTSRVWAREQDGRHTMLAVLV---GHRGPIRCAIAFLGRFGEETEDE  392 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~~--~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~  392 (434)
                      +....+..-...|..+.|+.  +.||.++  .+..+|+-.+.+-   .....++   ..-+.|+|++|+|.         
T Consensus       426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~aFSP~---------  493 (514)
T KOG2055|consen  426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCMAFSPN---------  493 (514)
T ss_pred             CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEEEecCC---------
Confidence            33344445566788999974  4666665  4678999888765   3333333   33456899999999         


Q ss_pred             ccEEEEeecCCeEEEEecC
Q 046226          393 YCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       393 ~~~l~s~~~Dg~v~iw~~~  411 (434)
                      +.+||.|-.+|.|.+|.+.
T Consensus       494 sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  494 SGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CceEEeecCCCceeeEeec
Confidence            8999999999999999975

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.5e-25  Score=185.91  Aligned_cols=254  Identities=18%  Similarity=0.196  Sum_probs=186.5

Q ss_pred             CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeE-EEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEE
Q 046226          143 DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN-LIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKV  220 (434)
Q Consensus       143 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~v  220 (434)
                      ++++.|+.|..|.|||+.-...+...-...  ........ .........+|+..|.+++|+.. .+.|++|+.|.+|++
T Consensus       193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LG--s~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLG--SKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             ceEEEeccCceeEEeccccccccccceeec--hhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            389999999999999987554433221111  00000000 00011112369999999999875 567899999999999


Q ss_pred             EEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCE
Q 046226          221 WRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGL  297 (434)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~  297 (434)
                      ||+.++++...+..|.+.|.++.|+|..  .|++|+.|++|.+.|.|.....  . ..   -...+.|..++|.|. ...
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--~-~~---wk~~g~VEkv~w~~~se~~  344 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--G-KE---WKFDGEVEKVAWDPHSENS  344 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--C-ce---EEeccceEEEEecCCCcee
Confidence            9999999999999999999999999987  9999999999999999831111  1 11   112367899999995 456


Q ss_pred             EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccc
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP  374 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  374 (434)
                      +++++.||+|+-+|+|...   +....++.|...|.+++++   ++++++++.|+.|++|++..... ..+..-.-.-+.
T Consensus       345 f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~r  420 (463)
T KOG0270|consen  345 FFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGR  420 (463)
T ss_pred             EEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccc
Confidence            7888899999999998654   4445778999999999987   56999999999999999876421 222221112234


Q ss_pred             eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      ..|.++.|+.        ...++.||..+.++|||+.+..+.
T Consensus       421 l~c~~~~~~~--------a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  421 LHCFALDPDV--------AFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             eeecccCCCc--------ceEEEecCccceEEEeecccChhH
Confidence            6677777774        568999999999999999877643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=1.9e-24  Score=191.29  Aligned_cols=119  Identities=24%  Similarity=0.239  Sum_probs=103.0

Q ss_pred             CeEEEEEec-CCCEEEEEcCCCeEEEEEcCccc---ccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEecc
Q 046226          285 PVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFS---AQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       285 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~  357 (434)
                      .|+.+.|+| |...|++++.||.|++|.+....   ........+..|...|+.+.|+   .+.|++++.|.+|++||+.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            467778888 67789999999999999986543   2334456778999999999998   4699999999999999999


Q ss_pred             CCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          358 QDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       358 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      +.   .....+.+|.+.|.+++|+|+         |+.+++.+.||+|++|+-.+++.
T Consensus       709 ~~---~~~~~l~gHtdqIf~~AWSpd---------Gr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  709 NA---KLYSRLVGHTDQIFGIAWSPD---------GRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             hh---hhhheeccCcCceeEEEECCC---------CcceeeeecCceEEEeCCCCCCC
Confidence            98   677788999999999999999         99999999999999999887654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.1e-25  Score=201.79  Aligned_cols=227  Identities=16%  Similarity=0.261  Sum_probs=195.4

Q ss_pred             cccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce
Q 046226           51 ISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT  123 (434)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~  123 (434)
                      .-.|+..+.........+.+.+++.+..+..|.+     +-.|.+|+.+|.|+.|  ...+|++|+.+|+|++||++..+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            3345555655555555677777776665555444     5568999999999999  78899999999999999999999


Q ss_pred             eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226          124 ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA  201 (434)
Q Consensus       124 ~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  201 (434)
                      .+.++.+|...+..+.|+|-  +.+.++.|+.+++||++...+...+.                      +|...|.++.
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~----------------------s~~~vv~~l~  161 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK----------------------SHTRVVDVLR  161 (825)
T ss_pred             hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec----------------------CCcceeEEEe
Confidence            99999999999999999996  66778889999999998776666653                      6999999999


Q ss_pred             EecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226          202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT  280 (434)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  280 (434)
                      |+|+|+++++|++|.+++|||+..|+.+..|+.|.+.+..+.|+|.. ++++|+.|+++++||++      ....+....
T Consensus       162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle------tfe~I~s~~  235 (825)
T KOG0267|consen  162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE------TFEVISSGK  235 (825)
T ss_pred             ecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc------eeEEeeccC
Confidence            99999999999999999999999999999999999999999999998 99999999999999987      566666666


Q ss_pred             ccccCeEEEEEecCCCEEEEEcCCC
Q 046226          281 AKYSPVKTLTLTLDDGLLYGGCTDG  305 (434)
Q Consensus       281 ~~~~~v~~~~~~~~~~~l~~~~~dg  305 (434)
                      .....|.+.+|+|++..+++|....
T Consensus       236 ~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  236 PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CccCCceeeeecCCceeeecCchhh
Confidence            6678999999999999999987654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.6e-24  Score=181.82  Aligned_cols=235  Identities=17%  Similarity=0.270  Sum_probs=184.7

Q ss_pred             EEEEE---------cCCEEEEEeCCCeEEEecCCCce---e------------------EeeccCCCccEEEEEEeCC--
Q 046226           96 LCIAV---------GNGFIYTGSDSNVIRIWKQPEFT---E------------------CGRLKAKTSMVVAMEVSHD--  143 (434)
Q Consensus        96 ~~~~~---------~~~~l~tg~~dg~i~iwd~~~~~---~------------------~~~~~~~~~~v~~l~~~~~--  143 (434)
                      .|++|         .|+++|.|+.|..|.|||+.-..   +                  -..-.+|+..|.++.|+.+  
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            67777         36899999999999999974210   0                  0112368889999999875  


Q ss_pred             -EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEE
Q 046226          144 -RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVW  221 (434)
Q Consensus       144 -~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vw  221 (434)
                       .|++|+.|.+|++||+.+++....+.                      .|.+.|.++.|+|. ...|++|+.|++|.+.
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~  314 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSIT----------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALK  314 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehh----------------------hcCCceeEEEecCCCceEEEeccccceEEee
Confidence             79999999999999999988777663                      48999999999985 5789999999999999


Q ss_pred             EcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEE
Q 046226          222 RIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLL  298 (434)
Q Consensus       222 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  298 (434)
                      |.+........-.-.+.|..++|.+..  .++++..||.|+-+|+|     .....+..+..|..+|.+++++.. -.++
T Consensus       315 D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R-----~~~~~vwt~~AHd~~ISgl~~n~~~p~~l  389 (463)
T KOG0270|consen  315 DCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR-----NPGKPVWTLKAHDDEISGLSVNIQTPGLL  389 (463)
T ss_pred             eccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC-----CCCCceeEEEeccCCcceEEecCCCCcce
Confidence            998532222111245689999999887  78888999999999999     333678888999999999999884 4678


Q ss_pred             EEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC---EEEEecCCCcEEEEeccCC
Q 046226          299 YGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN---YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       299 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~  359 (434)
                      ++++.|+.|++|++............+.-  +...|++++..   .++.|+..+.++|||+.+.
T Consensus       390 ~t~s~d~~Vklw~~~~~~~~~v~~~~~~~--~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  390 STASTDKVVKLWKFDVDSPKSVKEHSFKL--GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             eeccccceEEEEeecCCCCcccccccccc--cceeecccCCCcceEEEecCccceEEEeecccC
Confidence            89999999999999766555444333322  23567777644   8899999999999999876

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=8.9e-23  Score=182.43  Aligned_cols=359  Identities=16%  Similarity=0.189  Sum_probs=257.5

Q ss_pred             CcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeEE------------EeeccccEEEEEE--cCCEEEEEeCCCeEE
Q 046226           50 PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISS------------VLKKDGQILCIAV--GNGFIYTGSDSNVIR  115 (434)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~h~~~v~~~~~--~~~~l~tg~~dg~i~  115 (434)
                      .+.+|.+-+++....+.+..+.+++.|.+.-.|+....            .-|..+.-+..-|  +++.+++-+..|-.+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            45599999999999999999999999988766665332            2233445677777  778899999999999


Q ss_pred             EecCCC---ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc--------------------e----
Q 046226          116 IWKQPE---FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV--------------------K----  166 (434)
Q Consensus       116 iwd~~~---~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~--------------------~----  166 (434)
                      +|..++   ......+.+|.+.|.+++|+|.  +|++++.|.+-|++---..+..                    .    
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence            998433   3445567899999999999975  9999999999998743211100                    0    


Q ss_pred             --------eeEeee----------------------------cc--------------CCCCc----ee-----------
Q 046226          167 --------HVKLAT----------------------------IP--------------KTGGA----VR-----------  181 (434)
Q Consensus       167 --------~~~~~~----------------------------~~--------------~~~~~----~~-----------  181 (434)
                              .++...                            .|              ..+..    ..           
T Consensus       422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~  501 (764)
T KOG1063|consen  422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT  501 (764)
T ss_pred             eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence                    000000                            00              00000    00           


Q ss_pred             -----------EEEeccccccCcCCCeEEEEEecCCCEEEEEecCC-----cEEEEEcCCCeeEEEcccCccCeEEEEEc
Q 046226          182 -----------NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK-----TIKVWRIRDSKCIETIQAHSEPINALVVA  245 (434)
Q Consensus       182 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  245 (434)
                                 .+.....++.+|...|.+++.+|+++++++++...     .|++|+..+...++.+.+|.-.|+.|+|+
T Consensus       502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS  581 (764)
T KOG1063|consen  502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS  581 (764)
T ss_pred             CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence                       00000115678999999999999999999997643     69999999999999999999999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc
Q 046226          246 DDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA  324 (434)
Q Consensus       246 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  324 (434)
                      ||+ +|++.+.|.++.+|...  ..............|..-|....|+|++.++++++.|.+|++|..............
T Consensus       582 pdg~~LLsvsRDRt~sl~~~~--~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a  659 (764)
T KOG1063|consen  582 PDGRYLLSVSRDRTVSLYEVQ--EDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA  659 (764)
T ss_pred             CCCcEEEEeecCceEEeeeee--cccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc
Confidence            999 99999999999999864  111111112336788899999999999999999999999999987654222211113


Q ss_pred             ccCcccceEEEEee-------CCEEEEecCCCcEEEEecc------CCCcee---eEEEeeccccceeEEEEeecccCCC
Q 046226          325 LQGHTHAVMCLASV-------ANYVISGSADSTSRVWARE------QDGRHT---MLAVLVGHRGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       325 ~~~~~~~v~~~~~~-------~~~l~s~~~dg~i~iwd~~------~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~  388 (434)
                      ...+...|+++++.       +..++.|-..|.|.+|...      +.....   .+....+|...|+.+.|.|.- +..
T Consensus       660 ~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~-~~~  738 (764)
T KOG1063|consen  660 CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTC-SDD  738 (764)
T ss_pred             hhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccc-ccc
Confidence            44677788888874       2378899999999999965      211111   222344678899999999862 111


Q ss_pred             CC--CcccEEEEeecCCeEEEEecC
Q 046226          389 TE--DEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       389 ~~--~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      +.  .+...|++|+.|..++|+++.
T Consensus       739 ~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  739 WVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cccccceeEEeeecccceeEEeecc
Confidence            11  124567999999999999875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-23  Score=173.23  Aligned_cols=278  Identities=13%  Similarity=0.189  Sum_probs=202.8

Q ss_pred             CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC----CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226          103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH----DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG  178 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (434)
                      +.+|++...|.|++||..+++.+..++++...++.+.|..    +.+++|+.||+|++||++.......+...       
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-------  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-------  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-------
Confidence            5688999999999999999999999999999999999965    48999999999999999887665555321       


Q ss_pred             ceeEEEeccccccCcC-CCeEEEEEecCCCEEEEEec----CCcEEEEEcCCCee-EEEc-ccCccCeEEEEEcCCC--e
Q 046226          179 AVRNLIVGKDKMMKHM-GPITSIAINVSDDTLYSASL----DKTIKVWRIRDSKC-IETI-QAHSEPINALVVADDG--V  249 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~--~  249 (434)
                                   ++. .+..|++.+..++.+++|+.    +-.|.+||++..+. +..+ ..|.+.|+++.|+|..  +
T Consensus       114 -------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl  180 (376)
T KOG1188|consen  114 -------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL  180 (376)
T ss_pred             -------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence                         233 46777777767888888754    66899999998765 5554 4599999999999988  9


Q ss_pred             EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccccCccc--
Q 046226          250 LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ--  326 (434)
Q Consensus       250 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--  326 (434)
                      |++|+.||.|.+||+...   .....+.....+...|..+.|..++ +.|.+-+..+...+|+++.......+.....  
T Consensus       181 LlSGSvDGLvnlfD~~~d---~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~  257 (376)
T KOG1188|consen  181 LLSGSVDGLVNLFDTKKD---NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA  257 (376)
T ss_pred             EEeecccceEEeeecCCC---cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence            999999999999999822   2222333344566789999998876 4688888999999999987664433322100  


Q ss_pred             -------CcccceEEEEee-CCEEEE-ecCCCcEEEEecc---CCCceeeEEEeec-cccceeEEEEeecccCCCCCCcc
Q 046226          327 -------GHTHAVMCLASV-ANYVIS-GSADSTSRVWARE---QDGRHTMLAVLVG-HRGPIRCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       327 -------~~~~~v~~~~~~-~~~l~s-~~~dg~i~iwd~~---~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~  393 (434)
                             .-..-|.+.... ...++. |+.-+...++-+.   ++...+.+..+.+ |..-|+++.|...         +
T Consensus       258 ~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~---------~  328 (376)
T KOG1188|consen  258 DDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK---------N  328 (376)
T ss_pred             hhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc---------c
Confidence                   001112222222 234444 4435555555443   3434456666776 6777888888765         7


Q ss_pred             cEEEEeecCCeEEEEecCC
Q 046226          394 CTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       394 ~~l~s~~~Dg~v~iw~~~~  412 (434)
                      .++.|||+||.+.+|..+.
T Consensus       329 ~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  329 DVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             ceeeccCCCceEEEEecCC
Confidence            8999999999999999643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-22  Score=165.45  Aligned_cols=278  Identities=14%  Similarity=0.232  Sum_probs=203.1

Q ss_pred             EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226           95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKL  170 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~  170 (434)
                      -.|+.|  .|.+||+|+.||.|.|||+.+...-..+.+|..+|.+++|+++  .|++++.|..|.+||+..+.....+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            688999  8999999999999999999999988889999999999999998  89999999999999999888777664 


Q ss_pred             eeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEccc-Cc----cCeEEEEE
Q 046226          171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQA-HS----EPINALVV  244 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~----~~v~~~~~  244 (434)
                                            ...+|+.+.|+|.. +..++.-.+..-.+.++..++. ..+.. ..    ..-.+..|
T Consensus       105 ----------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~f  161 (405)
T KOG1273|consen  105 ----------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVF  161 (405)
T ss_pred             ----------------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccc
Confidence                                  67889999999854 3444444455555666654221 11111 11    11223356


Q ss_pred             cCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccc-cCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc----
Q 046226          245 ADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY-SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ----  318 (434)
Q Consensus       245 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----  318 (434)
                      .+.| ++++|...|.+.++|..      ..+.+..++... ..|..+.++..|++|+.-+.|..|+.|+++.-...    
T Consensus       162 dr~g~yIitGtsKGkllv~~a~------t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~  235 (405)
T KOG1273|consen  162 DRRGKYIITGTSKGKLLVYDAE------TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDG  235 (405)
T ss_pred             cCCCCEEEEecCcceEEEEecc------hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccC
Confidence            7777 99999999999999977      234444444333 67889999999999999999999999998632211    


Q ss_pred             -ccccCcccCc---c-cceEEEEeeCCEEEEecC-CCcEEEEeccCCCceeeEEEeeccc-cceeEEEEeecccCCCCCC
Q 046226          319 -LQYGGALQGH---T-HAVMCLASVANYVISGSA-DSTSRVWAREQDGRHTMLAVLVGHR-GPIRCAIAFLGRFGEETED  391 (434)
Q Consensus       319 -~~~~~~~~~~---~-~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~  391 (434)
                       .+..+.++.-   . -.-.|++-+|.|+++++. -..++||....|   .+++.+.|.. .....+.|+|-        
T Consensus       236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE~l~DV~whp~--------  304 (405)
T KOG1273|consen  236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGEELLDVNWHPV--------  304 (405)
T ss_pred             CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchhheeecccccc--------
Confidence             1111111110   0 011333345778877764 468999999888   7888888877 56778999998        


Q ss_pred             cccEEEEeecCCeEEEEecCCCCc
Q 046226          392 EYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       392 ~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                       ...|++- ..|.|+||......+
T Consensus       305 -rp~i~si-~sg~v~iw~~~~~en  326 (405)
T KOG1273|consen  305 -RPIIASI-ASGVVYIWAVVQVEN  326 (405)
T ss_pred             -eeeeeec-cCCceEEEEeecccc
Confidence             5567776 789999999876554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=6e-23  Score=168.02  Aligned_cols=299  Identities=16%  Similarity=0.204  Sum_probs=213.0

Q ss_pred             ccceeeeEEE-eeccccEEEEEE-------cCCEEEEEeCCCeEEEecCCCc---eeEeecc--CCCccEEEEEEeCC--
Q 046226           79 SSSYRCISSV-LKKDGQILCIAV-------GNGFIYTGSDSNVIRIWKQPEF---TECGRLK--AKTSMVVAMEVSHD--  143 (434)
Q Consensus        79 ~~~~~~~~~~-~~h~~~v~~~~~-------~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~--~~~~~v~~l~~~~~--  143 (434)
                      .+.+++...+ ..|+.+|..++|       .-+.++|.+. +.+.+|+....   ..++.+.  .|......++|.-+  
T Consensus        24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN  102 (385)
T ss_pred             ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence            4556666554 458899999999       2456777765 57888876542   2333332  36667777787643  


Q ss_pred             ----EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcE
Q 046226          144 ----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTI  218 (434)
Q Consensus       144 ----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i  218 (434)
                          .+++++.-|.|+|.|+.+++....+.                      +|...|+.+.++|+. +++++++.|..|
T Consensus       103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~----------------------ghG~sINeik~~p~~~qlvls~SkD~sv  160 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYR----------------------GHGGSINEIKFHPDRPQLVLSASKDHSV  160 (385)
T ss_pred             CCCeeEEeecceeEEEEEecchhhhcccee----------------------ccCccchhhhcCCCCCcEEEEecCCceE
Confidence                78888899999999998877766663                      799999999999975 688899999999


Q ss_pred             EEEEcCCCeeEEEcc---cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc------------ee---------
Q 046226          219 KVWRIRDSKCIETIQ---AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ------------LH---------  273 (434)
Q Consensus       219 ~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~------------~~---------  273 (434)
                      ++|++++..++..+.   +|.+.|.++.|+.++ ++++++.|..|++|++....-..            ..         
T Consensus       161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~  240 (385)
T KOG1034|consen  161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH  240 (385)
T ss_pred             EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence            999999999998875   599999999999999 99999999999999986211000            00         


Q ss_pred             -EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc----------ccCcccCcccceEEEEe--e--
Q 046226          274 -TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ----------YGGALQGHTHAVMCLAS--V--  338 (434)
Q Consensus       274 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~~~~~~v~~~~~--~--  338 (434)
                       ....+...|...|-|+.|-  |+++++-+-++.|..|..........          ....+.-....|+-+.|  +  
T Consensus       241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~  318 (385)
T KOG1034|consen  241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW  318 (385)
T ss_pred             cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence             0001223455555566554  57899988899999998632221111          11122222333444433  3  


Q ss_pred             CCEEEEecCCCcEEEEeccCCCceeeEEEe-eccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          339 ANYVISGSADSTSRVWAREQDGRHTMLAVL-VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       339 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      ++.|+.|...|.|++||+++.....+.... .-....|...+|+.+         +.+|+...+|++|--||--
T Consensus       319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d---------gs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD---------GSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc---------CcEEEEEeCCCcEEEEEee
Confidence            679999999999999999987543222211 112346889999998         8999999999999999853

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=1.2e-23  Score=186.19  Aligned_cols=288  Identities=19%  Similarity=0.212  Sum_probs=196.8

Q ss_pred             CCCCccCCCCCCCcccceee-----------eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEee--cc
Q 046226           65 FNPTAAAGSSSPETSSSYRC-----------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGR--LK  129 (434)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~  129 (434)
                      ...-.++.+..++.+..++.           +..+..|.++|..+.|  ....|++++.|.++++||+++.+++..  +.
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~  141 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL  141 (720)
T ss_pred             CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence            33444455555555444333           2345679999999999  667899999999999999999988877  88


Q ss_pred             CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCce--eeEe--eeccCC-CCceeEEEeccccccCcCCCeEE--
Q 046226          130 AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVK--HVKL--ATIPKT-GGAVRNLIVGKDKMMKHMGPITS--  199 (434)
Q Consensus       130 ~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~--~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~--  199 (434)
                      +|.+.|.+++|.+.   .+++|+.||.|.|||++-...-.  .+..  ...... ......+.........+...|.+  
T Consensus       142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv  221 (720)
T KOG0321|consen  142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV  221 (720)
T ss_pred             ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence            99999999999875   78999999999999987544110  0000  000000 01111112222233346666666  


Q ss_pred             -EEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEc--------ccC---ccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226          200 -IAINVSDDTLYSASL-DKTIKVWRIRDSKCIETI--------QAH---SEPINALVVADDG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       200 -~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~--------~~~---~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~  265 (434)
                       +.+..|...|++++. |+.|+|||+++.......        ..|   .-.+.++.....| +|++.+.|+.|.+||+.
T Consensus       222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~  301 (720)
T KOG0321|consen  222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR  301 (720)
T ss_pred             EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence             666689999999887 999999999875433222        223   2356777777777 66666679999999987


Q ss_pred             cccCcceeEEEEEeccccc--CeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC---
Q 046226          266 FYSENQLHTLILTLTAKYS--PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN---  340 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---  340 (434)
                      .....    +...+.++..  --..-..+|++.++++|+.|...++|.+.......   ..+.+|...|+++.|...   
T Consensus       302 s~s~s----P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~---~~l~Ght~eVt~V~w~pS~~t  374 (720)
T KOG0321|consen  302 SLSIS----PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP---ALLLGHTREVTTVRWLPSATT  374 (720)
T ss_pred             ccCcC----chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh---hhhhCcceEEEEEeeccccCC
Confidence            32221    1222222111  11223468899999999999999999986544333   356699999999999743   


Q ss_pred             EEEEecCCCcEEEEeccCC
Q 046226          341 YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~  359 (434)
                      -++++++|..++||++.++
T Consensus       375 ~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  375 PVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CceeeccCcceEEEeccCc
Confidence            5778899999999999765

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1e-23  Score=181.71  Aligned_cols=248  Identities=18%  Similarity=0.254  Sum_probs=196.5

Q ss_pred             CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226          130 AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD  207 (434)
Q Consensus       130 ~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (434)
                      .|..-|.++.++..  .+++| ..|.|+|||+........+.            .+.     .......|+++.+.|||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~Pvs------------qLd-----cl~rdnyiRSckL~pdgr  478 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVS------------QLD-----CLNRDNYIRSCKLLPDGR  478 (705)
T ss_pred             ccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCccc------------ccc-----ccCcccceeeeEecCCCc
Confidence            47777888888765  55555 56889999997653221111            111     113556799999999999


Q ss_pred             EEEEEecCCcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc
Q 046226          208 TLYSASLDKTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS  284 (434)
Q Consensus       208 ~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  284 (434)
                      .|++|++-.++.|||+.....  ...+....-...+++.+||. ..+++..||.|.|||+.      ....+..+.+|..
T Consensus       479 tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh------nq~~VrqfqGhtD  552 (705)
T KOG0639|consen  479 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH------NQTLVRQFQGHTD  552 (705)
T ss_pred             eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc------cceeeecccCCCC
Confidence            999999999999999976543  23333334567789999999 88999999999999998      6678889999999


Q ss_pred             CeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCce
Q 046226          285 PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRH  362 (434)
Q Consensus       285 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~  362 (434)
                      .+.||.++++|..|.+|+-|.+|+.||++......+.     .....|.++...  +++|+.|-.++.+.|-.....   
T Consensus       553 GascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-----dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp---  624 (705)
T KOG0639|consen  553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-----DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP---  624 (705)
T ss_pred             CceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-----hhhhhheecccCCCccceeeecccCcEEEEecCCc---
Confidence            9999999999999999999999999999866554443     234567777654  779999999999998887653   


Q ss_pred             eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccccc
Q 046226          363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGH  419 (434)
Q Consensus       363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~  419 (434)
                       ....+.-|...|.++.|.+.         |+++++.|.|..+..|...-|..+...
T Consensus       625 -~kyqlhlheScVLSlKFa~c---------GkwfvStGkDnlLnawrtPyGasiFqs  671 (705)
T KOG0639|consen  625 -EKYQLHLHESCVLSLKFAYC---------GKWFVSTGKDNLLNAWRTPYGASIFQS  671 (705)
T ss_pred             -cceeecccccEEEEEEeccc---------CceeeecCchhhhhhccCccccceeec
Confidence             44566679999999999999         999999999999999999988766543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=172.95  Aligned_cols=241  Identities=17%  Similarity=0.253  Sum_probs=181.4

Q ss_pred             EeeccccEEEEEE----cCCEEEEEeCCCeEEEecCCC----------------ceeEeeccCCCccEEEEEEeCC---E
Q 046226           88 VLKKDGQILCIAV----GNGFIYTGSDSNVIRIWKQPE----------------FTECGRLKAKTSMVVAMEVSHD---R  144 (434)
Q Consensus        88 ~~~h~~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~l~~~~~---~  144 (434)
                      ..+|.+.|.-+..    +..+.++=+..|.|.||++..                .+++.++.+|...=+.|+|+|-   .
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            3456666665555    556777778899999999732                4567788899999999999994   6


Q ss_pred             EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEc
Q 046226          145 VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRI  223 (434)
Q Consensus       145 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~  223 (434)
                      |++|..-+.|++|...++....                   ....+.+|...|..++|+|. ...|++|+.||+|+|||+
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~v-------------------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi  287 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKV-------------------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI  287 (440)
T ss_pred             cccCccccceEeeeeccCceee-------------------cCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence            8888888999999876643211                   11223479999999999996 568899999999999999


Q ss_pred             CCC---eeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEE
Q 046226          224 RDS---KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLL  298 (434)
Q Consensus       224 ~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  298 (434)
                      +.+   .++.+ +.|.+.|+.|.|+..- +|++|+.||+++|||++..+   ...++..+..|..+|+++.|+|. ...|
T Consensus       288 Rs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~---~~~pVA~fk~Hk~pItsieW~p~e~s~i  363 (440)
T KOG0302|consen  288 RSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK---SGQPVATFKYHKAPITSIEWHPHEDSVI  363 (440)
T ss_pred             cCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc---CCCcceeEEeccCCeeEEEeccccCceE
Confidence            987   34444 7899999999999777 89999999999999999433   33677888899999999999994 5678


Q ss_pred             EEEcCCCeEEEEEcCccccccc-------cc-----CcccCc--ccceEEEEee---CCEEEEecCCCcE
Q 046226          299 YGGCTDGYIHYWHKGWFSAQLQ-------YG-----GALQGH--THAVMCLASV---ANYVISGSADSTS  351 (434)
Q Consensus       299 ~~~~~dg~i~i~d~~~~~~~~~-------~~-----~~~~~~--~~~v~~~~~~---~~~l~s~~~dg~i  351 (434)
                      ++++.|..|.|||+......-+       ..     +.+--|  ...+..+.|+   +.++++.+.||.-
T Consensus       364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn  433 (440)
T KOG0302|consen  364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN  433 (440)
T ss_pred             EeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence            8899999999999864332100       00     011122  2345566675   4588888888843

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=1.3e-23  Score=174.89  Aligned_cols=210  Identities=18%  Similarity=0.225  Sum_probs=170.2

Q ss_pred             CcCCCeEEEEEecCC--CEEEEEecCCcEEEEEcCC----------------CeeEEEcccCccCeEEEEEcCC--CeEE
Q 046226          192 KHMGPITSIAINVSD--DTLYSASLDKTIKVWRIRD----------------SKCIETIQAHSEPINALVVADD--GVLY  251 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~--~~l~  251 (434)
                      .|.+.++-+...+-+  .+.++-+..|.|.|||+..                .+++.++.+|...=+.|+|+|-  |.|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            577777777776654  4555667889999999853                3467888899999999999994  4899


Q ss_pred             EEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccccccCcccCccc
Q 046226          252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH  330 (434)
Q Consensus       252 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  330 (434)
                      +|.--+.|++|....   ..-..-...+.+|...|..++|+|. ...|++|+.||.|+|||++........  ..+.|..
T Consensus       229 sGDc~~~I~lw~~~~---g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~--~~kAh~s  303 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPST---GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV--STKAHNS  303 (440)
T ss_pred             cCccccceEeeeecc---CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee--EeeccCC
Confidence            999899999998762   2222223455679999999999995 568899999999999999866433332  2368999


Q ss_pred             ceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226          331 AVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       331 ~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw  408 (434)
                      -|..++|+.+  +|++|++||+++|||++.-...+++..++-|..+|+++.|+|..        ...|+++|.|..|.||
T Consensus       304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e--------~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE--------DSVIAASGEDNQITIW  375 (440)
T ss_pred             ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc--------CceEEeccCCCcEEEE
Confidence            9999999855  89999999999999999876668999999999999999999985        6789999999999999


Q ss_pred             ecCCCC
Q 046226          409 RVTRPK  414 (434)
Q Consensus       409 ~~~~~~  414 (434)
                      |+.-.+
T Consensus       376 DlsvE~  381 (440)
T KOG0302|consen  376 DLSVEA  381 (440)
T ss_pred             EeeccC
Confidence            997554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.91  E-value=5.7e-24  Score=168.83  Aligned_cols=290  Identities=12%  Similarity=0.133  Sum_probs=206.5

Q ss_pred             eeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeecc-CCCccEEEEEEeC-CEEEEEEcCCeEEEeecC
Q 046226           84 CISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLK-AKTSMVVAMEVSH-DRVYAAYGDGKIRVWRST  160 (434)
Q Consensus        84 ~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~-~~l~~~s~dg~i~vwd~~  160 (434)
                      ....+.+|.+.|+|+.| .+.+|.+|..-|.|++|++.+......+. .+...|+.+..-| +.+.+-+.|+.+.+|++.
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence            34556789999999999 67789999999999999999988888888 6788999999988 489999999999999987


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-----C----CEEEEEecCC-cEEEEEcCCCeeEE
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-----D----DTLYSASLDK-TIKVWRIRDSKCIE  230 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~----~~l~s~~~dg-~i~vwd~~~~~~~~  230 (434)
                      ...-+..                         |.-.++++-|.+.     +    ..++.-++.. .+.+-|......+.
T Consensus        86 ~s~~i~i-------------------------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~  140 (323)
T KOG0322|consen   86 YSAFISI-------------------------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ  140 (323)
T ss_pred             CcceEEE-------------------------eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeE
Confidence            5332221                         2222333333221     1    1111111110 12222322222222


Q ss_pred             Ecc----cCccCeEEEEEcCC-C---eEEEEeCCCeEEEEeccccc----CcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226          231 TIQ----AHSEPINALVVADD-G---VLYSASDDATVRVWRRYFYS----ENQLHTLILTLTAKYSPVKTLTLTLDDGLL  298 (434)
Q Consensus       231 ~~~----~~~~~v~~~~~~~~-~---~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  298 (434)
                      ...    ...+.+.|..+.-+ +   ++++|.++|.+.+||+....    -.+..+.......|..+|.++.+.+.-..=
T Consensus       141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG  220 (323)
T KOG0322|consen  141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG  220 (323)
T ss_pred             ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC
Confidence            221    23456777765432 2   78888899999999998321    112223445566788999999999877777


Q ss_pred             EEEcCCCeEEEEEcCcccccccccCcccCcccce--EEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecccccee
Q 046226          299 YGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV--MCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIR  376 (434)
Q Consensus       299 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~  376 (434)
                      ++|+.+..+..|++..............-....|  ..+..+++.+++++.|+.||||+.++.   .++..++-|.+.|.
T Consensus       221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn  297 (323)
T KOG0322|consen  221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVN  297 (323)
T ss_pred             cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---Cchhhhhhhhccee
Confidence            8889999999999876544444333322222223  456678999999999999999999998   88999999999999


Q ss_pred             EEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          377 CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                      +++|+|+         ..++|++|.|++|.+|++
T Consensus       298 ~vAfspd---------~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  298 AVAFSPD---------CELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeCCC---------CchhhhccCCceEEeeec
Confidence            9999999         789999999999999996

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=8.9e-23  Score=164.63  Aligned_cols=234  Identities=17%  Similarity=0.218  Sum_probs=180.7

Q ss_pred             cCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-
Q 046226          129 KAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-  204 (434)
Q Consensus       129 ~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  204 (434)
                      ..|.+.|+++...+.   ++++|+.||.|.+||++.........+.....       -........+|.-.|.++.|-| 
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~-------c~v~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK-------CIVAKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehee-------eeccccCCccceeeeeeeEEeee
Confidence            458899999999874   89999999999999997654221111100000       0012223346889999999998 


Q ss_pred             CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC----eEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226          205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG----VLYSASDDATVRVWRRYFYSENQLHTLILTLT  280 (434)
Q Consensus       205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  280 (434)
                      |..+|.+++.|.+++|||.++.+....|+ -.+.|.+-+++|-.    ++++|..|-.|++.|+.      .......+.
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~------SGs~sH~Ls  185 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA------SGSFSHTLS  185 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc------CCcceeeec
Confidence            56788899999999999999998888776 56778888888754    78888899999999997      556677889


Q ss_pred             ccccCeEEEEEecCCCE-EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226          281 AKYSPVKTLTLTLDDGL-LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       281 ~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      +|...|.++.|+|...+ |++|+.||.|++||++..                                .|..++.|..++
T Consensus       186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra--------------------------------sgcf~~lD~hn~  233 (397)
T KOG4283|consen  186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA--------------------------------SGCFRVLDQHNT  233 (397)
T ss_pred             cccCceEEEEeccCceeEEEecCCCceEEEEEeecc--------------------------------cceeEEeecccC
Confidence            99999999999997665 778999999999998521                                123344444444


Q ss_pred             CceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          360 GRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       360 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      .....+..-..|.+.|..++|..+         +.++++++.|..+++|+..+|+...
T Consensus       234 k~~p~~~~n~ah~gkvngla~tSd---------~~~l~~~gtd~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  234 KRPPILKTNTAHYGKVNGLAWTSD---------ARYLASCGTDDRIRVWNMESGRNTL  282 (397)
T ss_pred             ccCccccccccccceeeeeeeccc---------chhhhhccCccceEEeecccCcccc
Confidence            343555566789999999999998         9999999999999999999987643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.3e-21  Score=178.86  Aligned_cols=242  Identities=19%  Similarity=0.209  Sum_probs=190.4

Q ss_pred             cCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC
Q 046226          129 KAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS  205 (434)
Q Consensus       129 ~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  205 (434)
                      ..|...-+.|+|.++  .|++++.||.|++|+.... +....+.                      -+...|.+++.  .
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~----------------------~~g~~v~~ia~--~   65 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID----------------------ISGELVSSIAC--Y   65 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh----------------------ccCceeEEEee--c
Confidence            368888899999987  8999999999999987654 2222221                      16667777775  4


Q ss_pred             CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS  284 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  284 (434)
                      +.+|++|+.+++|.+|.+..++.-..+....-++++++++.+| +++.|+.|-.|++.++.      .......+.+|.+
T Consensus        66 s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~------D~s~~~~lrgh~a  139 (933)
T KOG1274|consen   66 SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD------DSSQEKVLRGHDA  139 (933)
T ss_pred             ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc------ccchheeecccCC
Confidence            6699999999999999998887655555556789999999999 99999999999999877      4445667889999


Q ss_pred             CeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc----ccceEEEEee--CCEEEEecCCCcEEEEeccC
Q 046226          285 PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH----THAVMCLASV--ANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       285 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~  358 (434)
                      +|.++.|+|.+++|++.+.||.|++||+........+....+..    ...+..++|+  +..++..+.|+.|++|+..+
T Consensus       140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence            99999999999999999999999999998665443332222211    2334556776  45888888899999999988


Q ss_pred             CCceeeEEEe--eccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          359 DGRHTMLAVL--VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       359 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      .   .....+  ..|...+.++.|+|+         |.|||+++.||.|.|||+++
T Consensus       220 w---e~~f~Lr~~~~ss~~~~~~wsPn---------G~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  220 W---ELQFKLRDKLSSSKFSDLQWSPN---------GKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             c---eeheeecccccccceEEEEEcCC---------CcEEeeeccCCcEEEEeccc
Confidence            6   333333  234445899999999         99999999999999999994

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=2.3e-20  Score=166.14  Aligned_cols=264  Identities=11%  Similarity=0.055  Sum_probs=177.7

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEE-EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEE-EcCCeEE
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFI-YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAA-YGDGKIR  155 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~-s~dg~i~  155 (434)
                      .+++..+..|.. +.+++|  +++.+ ++++.++.|++||..+++....+..+.. +..++|+|+  .++++ ..|+.|+
T Consensus        21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~   98 (300)
T TIGR03866        21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVT   98 (300)
T ss_pred             CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEE
Confidence            345566665544 677888  67765 6677899999999999888777765544 567889887  45544 4589999


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC-cEEEEEcCCCeeEEEccc
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK-TIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~  234 (434)
                      +||+.+...+..+                       .+...+.+++|+|++.+++++..++ .+.+||..+++.+..+..
T Consensus        99 ~~d~~~~~~~~~~-----------------------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (300)
T TIGR03866        99 VIDIETRKVLAEI-----------------------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV  155 (300)
T ss_pred             EEECCCCeEEeEe-----------------------eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence            9999765433332                       1233467899999999999988765 567789988877665442


Q ss_pred             CccCeEEEEEcCCC-eEE-EEeCCCeEEEEecccccCcceeEEEEEecc---cccCeEEEEEecCCCEEEEE-cCCCeEE
Q 046226          235 HSEPINALVVADDG-VLY-SASDDATVRVWRRYFYSENQLHTLILTLTA---KYSPVKTLTLTLDDGLLYGG-CTDGYIH  308 (434)
Q Consensus       235 ~~~~v~~~~~~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~dg~i~  308 (434)
                       .....++.|++++ .++ ++..++.|++||+...  ............   .......++|+|++++++++ ..++.|.
T Consensus       156 -~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~  232 (300)
T TIGR03866       156 -DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR--KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA  232 (300)
T ss_pred             -CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc--eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence             3345789999999 554 4556999999998721  111111111000   11123568899999986554 4567899


Q ss_pred             EEEcCcccccccccCcccCcccceEEEEee--CCEEEEe-cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          309 YWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISG-SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       309 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      +||++..+....    . .+...+.+++|+  +++|+++ +.+|.|++||++++   +.+..++.. ...+.++++|
T Consensus       233 v~d~~~~~~~~~----~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~---~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       233 VVDAKTYEVLDY----L-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL---KVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEECCCCcEEEE----E-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEEcc-cccceeEeCC
Confidence            999864432211    1 122356677774  6687775 56899999999987   666666554 4457787764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=1.2e-21  Score=160.45  Aligned_cols=260  Identities=15%  Similarity=0.283  Sum_probs=198.8

Q ss_pred             cCCCccEEEEEEeC----C--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE
Q 046226          129 KAKTSMVVAMEVSH----D--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI  202 (434)
Q Consensus       129 ~~~~~~v~~l~~~~----~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  202 (434)
                      ..|..+|..++|++    +  .+++......+.+|.......+..+.....+                 .|......++|
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~-----------------d~~Esfytcsw   97 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADE-----------------DHDESFYTCSW   97 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCC-----------------CCCcceEEEEE
Confidence            46788999999985    1  5565566778899987655544444322111                 36677777888


Q ss_pred             ecC----CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226          203 NVS----DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLI  276 (434)
Q Consensus       203 ~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~  276 (434)
                      +-+    ..++++|+.-|.|+|.|+.++++...+.+|...|+.|.+.|+.  ++++++.|..||+|+++   ........
T Consensus        98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~---~~~Cv~Vf  174 (385)
T KOG1034|consen   98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ---TDVCVAVF  174 (385)
T ss_pred             EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc---CCeEEEEe
Confidence            754    4578899999999999999999999999999999999999998  99999999999999998   33333444


Q ss_pred             EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc--ccccc----------------------CcccCcccce
Q 046226          277 LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA--QLQYG----------------------GALQGHTHAV  332 (434)
Q Consensus       277 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~----------------------~~~~~~~~~v  332 (434)
                      ....+|...|.++.|+++|.++++++.|..|++|++...+.  ..+..                      .+..-|...|
T Consensus       175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV  254 (385)
T KOG1034|consen  175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV  254 (385)
T ss_pred             cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence            55678999999999999999999999999999999873211  11110                      1233577788


Q ss_pred             EEEEeeCCEEEEecCCCcEEEEeccC-C----------CceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226          333 MCLASVANYVISGSADSTSRVWAREQ-D----------GRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL  401 (434)
Q Consensus       333 ~~~~~~~~~l~s~~~dg~i~iwd~~~-~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  401 (434)
                      -|+.|-|+++++-+-++.|..|.... +          .....+.++.-....|+-+.|.-|.+       +++||.|..
T Consensus       255 DCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~-------~~~la~gnq  327 (385)
T KOG1034|consen  255 DCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW-------QKMLALGNQ  327 (385)
T ss_pred             HHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH-------HHHHhhccC
Confidence            88888899999999999999998621 1          11234455555566777777775533       789999999


Q ss_pred             CCeEEEEecCCCCc
Q 046226          402 DGVLKMWRVTRPKS  415 (434)
Q Consensus       402 Dg~v~iw~~~~~~~  415 (434)
                      .|.|.+||++...+
T Consensus       328 ~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  328 SGKVYVWDLDNNEP  341 (385)
T ss_pred             CCcEEEEECCCCCC
Confidence            99999999998766

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=2.2e-21  Score=158.61  Aligned_cols=267  Identities=16%  Similarity=0.176  Sum_probs=196.8

Q ss_pred             EEEEEE--cCCEEEEEeCCCeEEEecCCCce------------eEeecc-CCCccEEEEEEeC-------C--EEEEEEc
Q 046226           95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFT------------ECGRLK-AKTSMVVAMEVSH-------D--RVYAAYG  150 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~------------~~~~~~-~~~~~v~~l~~~~-------~--~l~~~s~  150 (434)
                      ...+.|  ||..|++-+.|..+++|++...-            ....++ .....|...+|-+       +  ++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            345677  99999999999999999975310            111111 1244677777752       2  6777788


Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC---CeEEEEEecCCCEEEEEecCCcEEEEEc-CCC
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG---PITSIAINVSDDTLYSASLDKTIKVWRI-RDS  226 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~dg~i~vwd~-~~~  226 (434)
                      +.-|++||.-+++....+...                    .|..   ...+++|+|||.+|++|. ..+|+++|+ +.|
T Consensus       132 ~~PIh~wdaftG~lraSy~~y--------------------dh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpG  190 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAY--------------------DHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPG  190 (406)
T ss_pred             cCceeeeeccccccccchhhh--------------------hhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCC
Confidence            999999999887665554321                    2433   456899999999999887 678999999 555


Q ss_pred             eeE--EEc-----ccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226          227 KCI--ETI-----QAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL  297 (434)
Q Consensus       227 ~~~--~~~-----~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  297 (434)
                      ...  ...     .+..+-|.|++++|-.  .++.++....+-||.-.      ...+...+.+|.+.|+.++|.++|+.
T Consensus       191 r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~------~~~pl~llggh~gGvThL~~~edGn~  264 (406)
T KOG2919|consen  191 RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD------GRRPLQLLGGHGGGVTHLQWCEDGNK  264 (406)
T ss_pred             CCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC------CCCceeeecccCCCeeeEEeccCcCe
Confidence            421  111     1246788999999977  88999988888887543      44566677799999999999999999


Q ss_pred             EEEEcC-CCeEEEEEcCcccccccccCcccCccc----ce-EEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226          298 LYGGCT-DGYIHYWHKGWFSAQLQYGGALQGHTH----AV-MCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       298 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~----~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                      |++|.. |-.|..||++.......   .+..|..    .| ..++..+++|++|+.||.|++||++..+  ..+..+..|
T Consensus       265 lfsGaRk~dkIl~WDiR~~~~pv~---~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~  339 (406)
T KOG2919|consen  265 LFSGARKDDKILCWDIRYSRDPVY---ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNY  339 (406)
T ss_pred             ecccccCCCeEEEEeehhccchhh---hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccccccccc
Confidence            999876 77999999985544332   3333332    22 4455568999999999999999999843  466778889


Q ss_pred             ccceeEEEEeecccCCCCCCcccEEEEeecC
Q 046226          372 RGPIRCAIAFLGRFGEETEDEYCTICTGSLD  402 (434)
Q Consensus       372 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D  402 (434)
                      ...++.++++|-         -.++++++..
T Consensus       340 sd~vNgvslnP~---------mpilatssGq  361 (406)
T KOG2919|consen  340 SDTVNGVSLNPI---------MPILATSSGQ  361 (406)
T ss_pred             cccccceecCcc---------cceeeeccCc
Confidence            999999999998         6778887754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=6.5e-22  Score=170.45  Aligned_cols=256  Identities=14%  Similarity=0.158  Sum_probs=190.9

Q ss_pred             cEEEEEE-cCCEEEEE--eCCCeEEEecCCCc--eeEeeccCCCccEEEEEEeC--CEEEEEEcCCeEEEeecCCCCCce
Q 046226           94 QILCIAV-GNGFIYTG--SDSNVIRIWKQPEF--TECGRLKAKTSMVVAMEVSH--DRVYAAYGDGKIRVWRSTWDNGVK  166 (434)
Q Consensus        94 ~v~~~~~-~~~~l~tg--~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~--~~l~~~s~dg~i~vwd~~~~~~~~  166 (434)
                      .+..++| ..+.|+++  +.|..|++|.-...  +....-+.....-.|++...  -++++|+..+.|+|||++.....+
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr  115 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR  115 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence            3888899 44546655  45779999963221  11111111112233443332  388899999999999998444333


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC-ccCeEEEEEc
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH-SEPINALVVA  245 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~  245 (434)
                      .+                      .+|...|+++.++....+|++++..|.|.|..+.++.....|... ...|.-+.++
T Consensus       116 ~l----------------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys  173 (673)
T KOG4378|consen  116 FL----------------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYS  173 (673)
T ss_pred             hc----------------------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecc
Confidence            33                      279999999999999999999999999999999998877777654 3456688999


Q ss_pred             CCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCccccccccc
Q 046226          246 DDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYG  322 (434)
Q Consensus       246 ~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~  322 (434)
                      +..  +|.+++.+|.|.+||+.     ...........|..+...|+|+|. ..+|++.+.|..|.+||.+.......+ 
T Consensus       174 ~skr~lL~~asd~G~VtlwDv~-----g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-  247 (673)
T KOG4378|consen  174 PSKRFLLSIASDKGAVTLWDVQ-----GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-  247 (673)
T ss_pred             cccceeeEeeccCCeEEEEecc-----CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee-
Confidence            877  88899999999999987     233344455678899999999995 567788899999999998744332222 


Q ss_pred             CcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          323 GALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       323 ~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                          .-..+...++|  +|.+|++|...|.|..||++..+  .++..+..|...|++++|-|.
T Consensus       248 ----~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  248 ----TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             ----eecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeec
Confidence                22235556666  57799999999999999999754  688888999999999999886

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.9e-21  Score=162.98  Aligned_cols=298  Identities=14%  Similarity=0.164  Sum_probs=215.2

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC------ceeEeecc-CCCccEEEEEEeCC--EEEEEEcCCe
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE------FTECGRLK-AKTSMVVAMEVSHD--RVYAAYGDGK  153 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~------~~~~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg~  153 (434)
                      .+-+.+|.+.|.++.|  ++++|++|+.|..+++|+++.      .+++.... .|...|.|++|...  .+++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            3447889999999999  899999999999999999854      24444333 35689999999875  8999999999


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-eE--E
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-CI--E  230 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~--~  230 (434)
                      |...|+++.+.+..+.-                    ....+.|..+..+|..+.|++.+.++.|.+||.+..+ .+  .
T Consensus       129 VI~HDiEt~qsi~V~~~--------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~  188 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANE--------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV  188 (609)
T ss_pred             eEeeecccceeeeeecc--------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee
Confidence            99999988776655521                    0234589999999999999999999999999997654 11  1


Q ss_pred             EcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeE-EEEEecccccCeEEEEEecCCCEEEEEcCCCeE
Q 046226          231 TIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHT-LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYI  307 (434)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  307 (434)
                      .+.........+.|+|..  +|++.+..+-+-+||++......... ....+......-.++.|+|+|+.|++--....-
T Consensus       189 ~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P  268 (609)
T KOG4227|consen  189 LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP  268 (609)
T ss_pred             eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence            222244567888999987  88899999999999998332211111 011111112233577899999999888777777


Q ss_pred             EEEEcCccccc-ccccCcccC--cccceEEEEeeCC-EEEEecCCCcEEEEeccCCC--------------------cee
Q 046226          308 HYWHKGWFSAQ-LQYGGALQG--HTHAVMCLASVAN-YVISGSADSTSRVWAREQDG--------------------RHT  363 (434)
Q Consensus       308 ~i~d~~~~~~~-~~~~~~~~~--~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~--------------------~~~  363 (434)
                      .+||+-..... ++......+  ....+.++.|-++ -+++|+.+-.|++|.+....                    ...
T Consensus       269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~  348 (609)
T KOG4227|consen  269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK  348 (609)
T ss_pred             EEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence            77887542221 111101001  1234566677655 58999999999999875321                    113


Q ss_pred             eEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          364 MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       364 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      .+..+++|..-+..+.|+|.         ..+|++.|....++||.-.
T Consensus       349 ~~~VLrGHRSv~NQVRF~~H---------~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  349 ELTVLRGHRSVPNQVRFSQH---------NNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eeEEEecccccccceeecCC---------cceEeccchhhheeccccc
Confidence            46778999999999999998         7899999999999999744

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.8e-21  Score=164.34  Aligned_cols=282  Identities=13%  Similarity=0.171  Sum_probs=219.7

Q ss_pred             ccccCCCCCCCCCCCCCccCCCCCCCcccceee-------eEEEeeccccEEEEEE--cCC-EEEEEeCCCeEEEecCCC
Q 046226           52 SLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-------ISSVLKKDGQILCIAV--GNG-FIYTGSDSNVIRIWKQPE  121 (434)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~--~~~-~l~tg~~dg~i~iwd~~~  121 (434)
                      ......+.+..|.+....+.+++.+++++.|+.       ++.+.--..+|.+.+|  +|. .+++++....++.||+.+
T Consensus       210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            344567788888889999999999999888776       5556556789999999  677 899999999999999988


Q ss_pred             ceeEe--eccCCC-ccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCC
Q 046226          122 FTECG--RLKAKT-SMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGP  196 (434)
Q Consensus       122 ~~~~~--~~~~~~-~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (434)
                      .+...  ...++. ..+.....+++  .|+.++..|.|.+....+++.+..++                       ..+.
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-----------------------ieG~  346 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-----------------------IEGV  346 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-----------------------eccE
Confidence            66433  334443 34566667775  89999999999999988888777774                       6778


Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc-CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE
Q 046226          197 ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE-PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~  274 (434)
                      |..++|+.+++.|++.+.+|.|.+||++...+++++....+ .-+.++.+.++ +|++|+..|.|.|||....-.....+
T Consensus       347 v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk  426 (514)
T KOG2055|consen  347 VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK  426 (514)
T ss_pred             EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC
Confidence            99999999999999999999999999999999998874322 23567777888 99999999999999977544455566


Q ss_pred             EEEEecccccCeEEEEEecCCCEEEEEcC--CCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCc
Q 046226          275 LILTLTAKYSPVKTLTLTLDDGLLYGGCT--DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADST  350 (434)
Q Consensus       275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  350 (434)
                      ++..+......|+++.|+++.++|+.++.  +..+++-.+.....-..+ ......-+.|+|++|+  +.+||.|..+|.
T Consensus       427 Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNf-P~~n~~vg~vtc~aFSP~sG~lAvGNe~gr  505 (514)
T KOG2055|consen  427 PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNF-PTSNTKVGHVTCMAFSPNSGYLAVGNEAGR  505 (514)
T ss_pred             chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccC-CCCCCcccceEEEEecCCCceEEeecCCCc
Confidence            66666667778999999999999988876  567777765432211111 1112334568999997  459999999999


Q ss_pred             EEEEecc
Q 046226          351 SRVWARE  357 (434)
Q Consensus       351 i~iwd~~  357 (434)
                      +.+|.+.
T Consensus       506 v~l~kL~  512 (514)
T KOG2055|consen  506 VHLFKLH  512 (514)
T ss_pred             eeeEeec
Confidence            9999875

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.3e-20  Score=145.93  Aligned_cols=278  Identities=14%  Similarity=0.171  Sum_probs=188.1

Q ss_pred             cCCEEEEEeCCCeEEEecCCC----------ceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceee-E
Q 046226          101 GNGFIYTGSDSNVIRIWKQPE----------FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHV-K  169 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~-~  169 (434)
                      .+++|++|..+|.|.+..+.+          ...+...++|.++|+.++|..+.|++|+ ||.|+-|..+........ +
T Consensus        21 ~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~E~~es~~~K~   99 (325)
T KOG0649|consen   21 SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWNEEEESLATKR   99 (325)
T ss_pred             cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeehhhhhhccchh
Confidence            688999999999999998753          2334556899999999999977776665 599999987644331111 0


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEc-CCC
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-DDG  248 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~  248 (434)
                      +..          ...+...-.-.-..|+++...|..+-++.++.|+.++-||+++|+..+++++|.+.|.++.-. ..+
T Consensus       100 lwe----------~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen  100 LWE----------VKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhh----------hcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            000          000000000123468999999887777777789999999999999999999999999999984 445


Q ss_pred             eEEEEeCCCeEEEEecccccCcceeEEEE---Eeccc-ccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc
Q 046226          249 VLYSASDDATVRVWRRYFYSENQLHTLIL---TLTAK-YSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA  324 (434)
Q Consensus       249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  324 (434)
                      .+++|++||++|+||.+............   .++.+ ...|.+++.  +..+|++|+ ...+.+|.++..+....+  .
T Consensus       170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vf--p  244 (325)
T KOG0649|consen  170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVF--P  244 (325)
T ss_pred             ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEE--e
Confidence            99999999999999998322211111100   11111 123455554  457888775 457999999866554433  3


Q ss_pred             ccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCe
Q 046226          325 LQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV  404 (434)
Q Consensus       325 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~  404 (434)
                      ++   ..+..+.|..+.+++++..+.|.-|.+..    ..-...+......++..++...        -++|-.++....
T Consensus       245 ip---a~v~~v~F~~d~vl~~G~g~~v~~~~l~G----vl~a~ip~~s~~c~s~s~~~~p--------~k~~s~ag~s~~  309 (325)
T KOG0649|consen  245 IP---ARVHLVDFVDDCVLIGGEGNHVQSYTLNG----VLQANIPVESTACYSASWQTSP--------IKFISIAGFSNK  309 (325)
T ss_pred             cc---cceeEeeeecceEEEeccccceeeeeecc----EEEEeccCCccceeeecccCCc--------eEEEEeccccee
Confidence            33   35677889999999999999999998864    3333334434445555554331        356667777777


Q ss_pred             EEEEe
Q 046226          405 LKMWR  409 (434)
Q Consensus       405 v~iw~  409 (434)
                      +.|+.
T Consensus       310 ~~i~~  314 (325)
T KOG0649|consen  310 LHILK  314 (325)
T ss_pred             eeeee
Confidence            77764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=2.9e-21  Score=155.50  Aligned_cols=248  Identities=19%  Similarity=0.254  Sum_probs=188.2

Q ss_pred             EEeeccccEEEEEE---cCCEEEEEeCC-------CeEEEecCCC---------ceeEeecc-CCCccEEEEEEeCC--E
Q 046226           87 SVLKKDGQILCIAV---GNGFIYTGSDS-------NVIRIWKQPE---------FTECGRLK-AKTSMVVAMEVSHD--R  144 (434)
Q Consensus        87 ~~~~h~~~v~~~~~---~~~~l~tg~~d-------g~i~iwd~~~---------~~~~~~~~-~~~~~v~~l~~~~~--~  144 (434)
                      .|..|.+.|+.++-   +.++|+|+..+       -.+.||.++.         .+++..+. .+-+.|.|+.|.|+  .
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            36678899999887   78888887653       2567998764         23333443 35568999999998  4


Q ss_pred             EEEEEcCCeEEEeecCCCCCc-eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec--CCCEEEEEecCCcEEEE
Q 046226          145 VYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV--SDDTLYSASLDKTIKVW  221 (434)
Q Consensus       145 l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vw  221 (434)
                      +++. .|..|.+|++.....+ ..+....                 ..++....++-+|+|  +++.+++.+ |+++..|
T Consensus       138 lasm-~dn~i~l~~l~ess~~vaev~ss~-----------------s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~  198 (370)
T KOG1007|consen  138 LASM-DDNNIVLWSLDESSKIVAEVLSSE-----------------SAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFW  198 (370)
T ss_pred             eEEe-ccCceEEEEcccCcchheeecccc-----------------cccccceecccccCCCCccceEEEeC-CCcEEEE
Confidence            4443 4899999999876653 2221110                 013666778889988  678887776 8999999


Q ss_pred             EcCCCeeEEEcc-cCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCE
Q 046226          222 RIRDSKCIETIQ-AHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGL  297 (434)
Q Consensus       222 d~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  297 (434)
                      |+++.++...+. .|...|..+.|+|+.  .|++|+.||.|++||.+     ....++..+.+|...|.++.|+| ..++
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R-----~tk~pv~el~~HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR-----KTKFPVQELPGHSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc-----CCCccccccCCCceEEEEEEecCccceE
Confidence            999987766664 588899999999998  89999999999999998     55667888999999999999999 4678


Q ss_pred             EEEEcCCCeEEEEEcCcccccc-------------------------cccCcccCcccceEEEEeeCC---EEEEecCCC
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQL-------------------------QYGGALQGHTHAVMCLASVAN---YVISGSADS  349 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg  349 (434)
                      +++|+.|..|.+|.........                         ....++..|...|.+++|+..   .|++-+.||
T Consensus       274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG  353 (370)
T KOG1007|consen  274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG  353 (370)
T ss_pred             EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence            8999999999999754322100                         112356689999999999743   899999999


Q ss_pred             cEEEEeccC
Q 046226          350 TSRVWAREQ  358 (434)
Q Consensus       350 ~i~iwd~~~  358 (434)
                      .+.|=.+..
T Consensus       354 RviIs~V~r  362 (370)
T KOG1007|consen  354 RVIISSVPR  362 (370)
T ss_pred             eEEeecCCh
Confidence            998876653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=3.3e-21  Score=166.13  Aligned_cols=266  Identities=13%  Similarity=0.134  Sum_probs=192.7

Q ss_pred             EeCCCeEEEecCCCceeEeeccCC--CccEEEEEEeCC-EEEEEE--cCCeEEEeecCCCCCceeeEeeeccCCCCceeE
Q 046226          108 GSDSNVIRIWKQPEFTECGRLKAK--TSMVVAMEVSHD-RVYAAY--GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN  182 (434)
Q Consensus       108 g~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~-~l~~~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (434)
                      ++....+++||....+....+..|  ...+.++.|... .|++++  .|..|++|.-...  ...+.....         
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k---------   76 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRK---------   76 (673)
T ss_pred             eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CCccceeec---------
Confidence            334457999999876655554433  234889999876 466654  4888999964322  111111000         


Q ss_pred             EEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEE
Q 046226          183 LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRV  261 (434)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~i  261 (434)
                               .....-.|++......++++|+..++|+|||++...+.+.++.|...|+++.++... +|++++..|.|.|
T Consensus        77 ---------~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii  147 (673)
T KOG4378|consen   77 ---------LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII  147 (673)
T ss_pred             ---------cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE
Confidence                     112234455555556899999999999999999878888899999999999998766 9999999999999


Q ss_pred             EecccccCcceeEEEEEeccc-ccCeEEEEEecCCCE-EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-
Q 046226          262 WRRYFYSENQLHTLILTLTAK-YSPVKTLTLTLDDGL-LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-  338 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-  338 (434)
                      ..+..      ......+... ...++-+.|++..++ |.+++.+|.|.+||+........   -...|..+...+.|+ 
T Consensus       148 h~~~t------~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~---~~~~HsAP~~gicfsp  218 (673)
T KOG4378|consen  148 HGTKT------KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH---ASEAHSAPCRGICFSP  218 (673)
T ss_pred             Eeccc------CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc---hhhhccCCcCcceecC
Confidence            98762      1122222222 345678999997664 56788999999999975554443   345788887777775 


Q ss_pred             --CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          339 --ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       339 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                        +.+|++.+.|..|.+||+....   ....+ .-..+...++|+++         |.+|+.|...|.|..||++..+.
T Consensus       219 sne~l~vsVG~Dkki~~yD~~s~~---s~~~l-~y~~Plstvaf~~~---------G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  219 SNEALLVSVGYDKKINIYDIRSQA---STDRL-TYSHPLSTVAFSEC---------GTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             CccceEEEecccceEEEeeccccc---cccee-eecCCcceeeecCC---------ceEEEeecCCceEEEEecccCCC
Confidence              4489999999999999999753   22222 23667899999999         99999999999999999997654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=1.8e-20  Score=157.79  Aligned_cols=302  Identities=14%  Similarity=0.119  Sum_probs=202.5

Q ss_pred             cccEEEEEE---cCCEEEEEeCCCeEEEecCCCc---------eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEe
Q 046226           92 DGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF---------TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVW  157 (434)
Q Consensus        92 ~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vw  157 (434)
                      ..+|..+.|   ..+.|+||+.|..|+||.+...         +....+..|...|+++.|+|+  .|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            457999999   3448999999999999976432         234557789999999999997  89999999999999


Q ss_pred             ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc
Q 046226          158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE  237 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  237 (434)
                      ....-... .............     .....+.+|...|..++|+|++.++++++.|+.+++||+..|+.+..+..|..
T Consensus        93 k~~~~~~~-~~d~e~~~~ke~w-----~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~  166 (434)
T KOG1009|consen   93 KQGDVRIF-DADTEADLNKEKW-----VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH  166 (434)
T ss_pred             EecCcCCc-cccchhhhCccce-----EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence            76531110 0000000001111     11123347999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE--EEEEecc-----------c----ccCeEEEEEecCCCEEE
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT--LILTLTA-----------K----YSPVKTLTLTLDDGLLY  299 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~-----------~----~~~v~~~~~~~~~~~l~  299 (434)
                      .+..++|.|-+ ++++-+.|...+.+++..........  .......           |    ..-...++|+|+|.+|+
T Consensus       167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            99999999988 88888888877777654211111111  0000000           1    11234678999999998


Q ss_pred             EEcC----CCe-----EEEEEcCcccccccccCcccCcccceEEEEee--------------------CCEEEEecCCCc
Q 046226          300 GGCT----DGY-----IHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--------------------ANYVISGSADST  350 (434)
Q Consensus       300 ~~~~----dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~l~s~~~dg~  350 (434)
                      +...    ++.     .++|+-.   ........+.....+...+.++                    ...++.++ ...
T Consensus       247 tPag~~~~g~~~~~n~tYvfsrk---~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~s  322 (434)
T KOG1009|consen  247 TPAGLFKVGGGVFRNTSYVFSRK---DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNS  322 (434)
T ss_pred             cccceeeeCCceeeceeEeeccc---cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cce
Confidence            8643    232     3444421   1111222233333333333321                    12345554 558


Q ss_pred             EEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          351 SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      |+|||.++......+  -.-|-..|+.++|+++         |.+|+..|.||...+-.++..+
T Consensus       323 vyvydtq~~~P~~~v--~nihy~~iTDiaws~d---------g~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  323 VYVYDTQTLEPLAVV--DNIHYSAITDIAWSDD---------GSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EEEeccccccceEEE--eeeeeeeecceeecCC---------CcEEEEeccCCceEEEEEcchh
Confidence            999999886332333  2348889999999999         9999999999998887776543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=5.3e-22  Score=187.41  Aligned_cols=266  Identities=18%  Similarity=0.252  Sum_probs=198.1

Q ss_pred             eCCCeEEEecCC--Cc----eeEeeccCCCccEEEEEEeCC------EEEEEEcCCeEEEeecCCC---CCceeeEeeec
Q 046226          109 SDSNVIRIWKQP--EF----TECGRLKAKTSMVVAMEVSHD------RVYAAYGDGKIRVWRSTWD---NGVKHVKLATI  173 (434)
Q Consensus       109 ~~dg~i~iwd~~--~~----~~~~~~~~~~~~v~~l~~~~~------~l~~~s~dg~i~vwd~~~~---~~~~~~~~~~~  173 (434)
                      +.+.++-||.+.  +.    +.+..+. -....+.++|.+.      .|+.|..||.|.+||...-   .....+     
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l-----  109 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL-----  109 (1049)
T ss_pred             ccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH-----
Confidence            345566666443  22    2333333 2446788999763      3666777999999997642   111111     


Q ss_pred             cCCCCceeEEEeccccccCcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEcc--cCccCeEEEEEcCCC--
Q 046226          174 PKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQ--AHSEPINALVVADDG--  248 (434)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~--  248 (434)
                             .       ....|.+.|..+.|++... +|++|+.||.|.|||+...+.-....  ...+.|.+++|+..-  
T Consensus       110 -------a-------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqh  175 (1049)
T KOG0307|consen  110 -------A-------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSH  175 (1049)
T ss_pred             -------h-------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhH
Confidence                   0       1236999999999999755 99999999999999998755433332  245689999999765  


Q ss_pred             eEEEEeCCCeEEEEecccccCcceeEEEEEeccc--ccCeEEEEEecCC-CEEEEEcCCC---eEEEEEcCccccccccc
Q 046226          249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK--YSPVKTLTLTLDD-GLLYGGCTDG---YIHYWHKGWFSAQLQYG  322 (434)
Q Consensus       249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~  322 (434)
                      .|++++.+|.+.|||++      ..+.+..+..+  ...+..++|+|+. ..|++++.|.   .|.+||+|......+  
T Consensus       176 ILAS~s~sg~~~iWDlr------~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k--  247 (1049)
T KOG0307|consen  176 ILASGSPSGRAVIWDLR------KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK--  247 (1049)
T ss_pred             HhhccCCCCCceecccc------CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh--
Confidence            89999999999999998      22223333322  2468899999975 4566666543   799999976554443  


Q ss_pred             CcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226          323 GALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       323 ~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                       .+.+|...|.+++|+   ..+|++++.|+.|.+|+.+++   +.+..+.....++..+.|+|..        ...|+.+
T Consensus       248 -~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fdv~w~pr~--------P~~~A~a  315 (1049)
T KOG0307|consen  248 -ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFDVQWCPRN--------PSVMAAA  315 (1049)
T ss_pred             -hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceeeeeecCCC--------cchhhhh
Confidence             567999999999996   459999999999999999998   8889998888999999999984        5689999


Q ss_pred             ecCCeEEEEecCCCC
Q 046226          400 SLDGVLKMWRVTRPK  414 (434)
Q Consensus       400 ~~Dg~v~iw~~~~~~  414 (434)
                      +.||.|-|+.+....
T Consensus       316 sfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  316 SFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeccceeeeeeecCC
Confidence            999999999998765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=9.3e-21  Score=169.11  Aligned_cols=270  Identities=16%  Similarity=0.202  Sum_probs=209.2

Q ss_pred             cEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeE
Q 046226           94 QILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus        94 ~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~  169 (434)
                      .|..++|  ||..|+.+.. ..+.+||..+|..+.++++|.+.|++++|+.|  ++++|+.|..|.+|.-.-....+.  
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY--   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY--   90 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee--
Confidence            7889999  8887777754 57889999999999999999999999999987  899999999999998543332222  


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-  248 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  248 (434)
                                            .|.+.|.|+.|+|-...|++++- ...-+|..+... +...+ ....+.+.+|..|| 
T Consensus        91 ----------------------SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGq  145 (1081)
T KOG1538|consen   91 ----------------------SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQ  145 (1081)
T ss_pred             ----------------------ccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-HHhhh-hheeEEEeeecCCCc
Confidence                                  49999999999999999999885 357789875433 22222 34578899999999 


Q ss_pred             eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC-----CEEEEEcCCCeEEEEEcCcccccccccC
Q 046226          249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-----GLLYGGCTDGYIHYWHKGWFSAQLQYGG  323 (434)
Q Consensus       249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~  323 (434)
                      +++.|-.+|+|.+-+-.    ......+....+.+.+|.+++|+|..     ..+++.....++.+|.+........   
T Consensus       146 ylalG~~nGTIsiRNk~----gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~---  218 (1081)
T KOG1538|consen  146 YLALGMFNGTISIRNKN----GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD---  218 (1081)
T ss_pred             EEEEeccCceEEeecCC----CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc---
Confidence            99999999999987543    22233344445677899999999953     4788888888888888753221111   


Q ss_pred             cccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226          324 ALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL  401 (434)
Q Consensus       324 ~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  401 (434)
                        ..-.....|+++  +|.+++.|+.|+.+.+|.-+.    ..+.++.....+|+.++..|+         +++++.|+.
T Consensus       219 --r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----vrLGTvg~~D~WIWtV~~~PN---------sQ~v~~GCq  283 (1081)
T KOG1538|consen  219 --RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----VRLGTVGEQDSWIWTVQAKPN---------SQYVVVGCQ  283 (1081)
T ss_pred             --ccCCCCchhheeccCCcEEEEccCCCceEEEeecC----eEEeeccccceeEEEEEEccC---------CceEEEEEc
Confidence              111122345554  688999999999999997653    677777778889999999999         999999999


Q ss_pred             CCeEEEEecCCC
Q 046226          402 DGVLKMWRVTRP  413 (434)
Q Consensus       402 Dg~v~iw~~~~~  413 (434)
                      ||+|.-|++-..
T Consensus       284 DGTiACyNl~fS  295 (1081)
T KOG1538|consen  284 DGTIACYNLIFS  295 (1081)
T ss_pred             cCeeehhhhHHh
Confidence            999999998643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=7.7e-21  Score=155.18  Aligned_cols=211  Identities=16%  Similarity=0.203  Sum_probs=153.5

Q ss_pred             cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee-----EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEE
Q 046226          189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC-----IETIQAHSEPINALVVADDG--VLYSASDDATVRV  261 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~i  261 (434)
                      .+.+|.+.|++++|+.||++|++++.|+.|++|+++....     ++. ...-+..+.+.|.||.  .++++-....+++
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            4458999999999999999999999999999999986421     111 1122356789999998  7777778889999


Q ss_pred             EecccccCccee-EE-----EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEE
Q 046226          262 WRRYFYSENQLH-TL-----ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL  335 (434)
Q Consensus       262 wd~~~~~~~~~~-~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  335 (434)
                      |.+......... ..     ......|...+..+-....+.+|++++.|..|.+|++....  +..+.+ ......-.++
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~--L~~idt-nq~~n~~aav  236 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL--LQSIDT-NQSSNYDAAV  236 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCce--eeeecc-ccccccceee
Confidence            977522221110 00     01122344566667777788999999999999999986221  111111 1112233567


Q ss_pred             EeeCCEEEEecCCCcEEEEeccCCC-----ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          336 ASVANYVISGSADSTSRVWAREQDG-----RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       336 ~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                      +++|+++++++..-.|++|.+--++     ....+..++||...|..++|+++         ...++|.|.||+++|||+
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~---------S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS---------STRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC---------cceeEEEecCCcEEEeec
Confidence            7889999999999999999864321     22456788999999999999999         889999999999999998


Q ss_pred             CC
Q 046226          411 TR  412 (434)
Q Consensus       411 ~~  412 (434)
                      +-
T Consensus       308 dV  309 (420)
T KOG2096|consen  308 DV  309 (420)
T ss_pred             cc
Confidence            73

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=9.8e-22  Score=169.06  Aligned_cols=306  Identities=16%  Similarity=0.252  Sum_probs=231.1

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeec-cCCCccEEEEEEeCC----EEEEEEcC
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRL-KAKTSMVVAMEVSHD----RVYAAYGD  151 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~----~l~~~s~d  151 (434)
                      +..++....|..|.|.|..+.|  .|..|++|+.|..|.+||...+.....+ .+|...|....|-|.    .+++++.|
T Consensus       129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d  208 (559)
T KOG1334|consen  129 VQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD  208 (559)
T ss_pred             HHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecccc
Confidence            4455666778899999999999  8999999999999999999988877665 468888887778774    78999999


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEE
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIE  230 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~  230 (434)
                      |.+++=.+.....+...+                   .+..|.++|.-++.-|+. ..|++++.|+.+.-+|++.+....
T Consensus       209 gqvr~s~i~~t~~~e~t~-------------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~  269 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTK-------------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE  269 (559)
T ss_pred             Cceeeeeeccccceecce-------------------ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence            999988765443332111                   122599999999999975 458899999999999998765433


Q ss_pred             Ec---ccCcc---CeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEec------ccccCeEEEEEecCCC
Q 046226          231 TI---QAHSE---PINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLT------AKYSPVKTLTLTLDDG  296 (434)
Q Consensus       231 ~~---~~~~~---~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~  296 (434)
                      .+   ..+..   ....++..|..  .+++++.|..+++||.+..........+..+.      ...-.|++++|+.++.
T Consensus       270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s  349 (559)
T KOG1334|consen  270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS  349 (559)
T ss_pred             eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence            22   22333   56788888877  89999999999999988444432222222221      2234689999998888


Q ss_pred             EEEEEcCCCeEEEEEcCcccc--------cccccC-cccCccc--ceEEEEeeC---CEEEEecCCCcEEEEeccCCCce
Q 046226          297 LLYGGCTDGYIHYWHKGWFSA--------QLQYGG-ALQGHTH--AVMCLASVA---NYVISGSADSTSRVWAREQDGRH  362 (434)
Q Consensus       297 ~l~~~~~dg~i~i~d~~~~~~--------~~~~~~-~~~~~~~--~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~  362 (434)
                      -|+++..|-.|++|.-.....        ...+.. .+++|..  .|.++.|-|   +|+++|++-|.|.||+-.++   
T Consensus       350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---  426 (559)
T KOG1334|consen  350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---  426 (559)
T ss_pred             ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---
Confidence            888888899999996433222        002222 3678864  467777754   59999999999999999887   


Q ss_pred             eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      +.++.+.+...-|+|+.-+|-         -.+||+.|-|..||||.-...+.
T Consensus       427 eii~~MegDr~VVNCLEpHP~---------~PvLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  427 EIIRFMEGDRHVVNCLEPHPH---------LPVLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             HHHHHhhcccceEeccCCCCC---------CchhhccCCccceeeecCCcccc
Confidence            777777787778999998887         77999999999999999755443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=4.4e-20  Score=172.77  Aligned_cols=287  Identities=19%  Similarity=0.279  Sum_probs=198.2

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeeccCC---CccEEEEEEeCC----EEEEEEcCCeEEEeecCCCCCceeeEeeecc
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAK---TSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIP  174 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~  174 (434)
                      ...++++...-.|+|||.+.++....+..+   ...|+.+.+-.+    .+++|+.||.|+||+--.... ...++    
T Consensus      1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~-~~~eL---- 1150 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW-KKPEL---- 1150 (1387)
T ss_pred             CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc-CCcee----
Confidence            456778877779999999999988777653   457889988764    899999999999997432211 00000    


Q ss_pred             CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-CccCeEEEEEcCC-C-eEE
Q 046226          175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-HSEPINALVVADD-G-VLY  251 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~-~-~l~  251 (434)
                           +.....-.+...+..+.=.-+.|.....+|++++.-..|+|||+...+++..+.. ....|+++.-+.. | .++
T Consensus      1151 -----VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1151 -----VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             -----EEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence                 0000000111112222225567877777888877788999999998887777654 3446677655433 3 999


Q ss_pred             EEeCCCeEEEEecccccCcceeEEEEEecccccC--eEEEEEecCCC-EEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226          252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSP--VKTLTLTLDDG-LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       252 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      +|..||.|++||.+...   ....+...+.|...  |..+.+.++|- .|++|+.||.|++||++........  ....|
T Consensus      1226 AGfaDGsvRvyD~R~a~---~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~--~iv~~ 1300 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAP---PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL--TIVAH 1300 (1387)
T ss_pred             EeecCCceEEeecccCC---ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc--eeeec
Confidence            99999999999998332   33456667778776  99999988665 4999999999999999874222111  22233


Q ss_pred             c--c-ceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEE----eeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226          329 T--H-AVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAV----LVGHRGPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       329 ~--~-~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                      .  + ..+++..+  ...+|+|+. +.|+||++.... ...+..    +....+.+.|++|+|.         .-++|.|
T Consensus      1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~---------~~llAaG 1369 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPH---------RLLLAAG 1369 (1387)
T ss_pred             cccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecch---------hHhhhhc
Confidence            2  3 47788776  458899988 999999997531 111111    1122456799999998         6789999


Q ss_pred             ecCCeEEEEecCCCC
Q 046226          400 SLDGVLKMWRVTRPK  414 (434)
Q Consensus       400 ~~Dg~v~iw~~~~~~  414 (434)
                      +.|.+|.||...++.
T Consensus      1370 ~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cCCceEEEeecCCcC
Confidence            999999999987654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=7e-20  Score=147.77  Aligned_cols=285  Identities=15%  Similarity=0.138  Sum_probs=198.2

Q ss_pred             cEEEEEE-----cCCEEEEEeC----CCeEEEecC--CCceeEeec-cCCCccEEEEEEeCCE-----EEEEEcCCeEEE
Q 046226           94 QILCIAV-----GNGFIYTGSD----SNVIRIWKQ--PEFTECGRL-KAKTSMVVAMEVSHDR-----VYAAYGDGKIRV  156 (434)
Q Consensus        94 ~v~~~~~-----~~~~l~tg~~----dg~i~iwd~--~~~~~~~~~-~~~~~~v~~l~~~~~~-----l~~~s~dg~i~v  156 (434)
                      .+.++.|     .+.+||.|+.    .+.|.|-.+  .+++.+..- ..|.-+++.+.|.|+.     -+.++.+..+++
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRl  125 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRL  125 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEE
Confidence            3666777     3557888864    345555533  344444322 3588899999999872     123444567999


Q ss_pred             eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCe---eEEEc
Q 046226          157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSK---CIETI  232 (434)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~---~~~~~  232 (434)
                      |.+...+.......             .....+-..+..++++..|+. +-+++.+.+-|-+..|||++++.   ....+
T Consensus       126 Wri~~ee~~~~~~~-------------~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  126 WRIGDEESRVELQS-------------VLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             EeccCcCCceehhh-------------hhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence            99875322111110             000111125778999999986 56788899999999999999863   35667


Q ss_pred             ccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCC-CeEE
Q 046226          233 QAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTD-GYIH  308 (434)
Q Consensus       233 ~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d-g~i~  308 (434)
                      -.|...|..++|..++  .+++++.||.+|+||++.   ..-..++..-.....+...++|+++ -+++++-..| ..|.
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~---leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~  269 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS---LEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV  269 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecc---cccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence            7899999999999876  999999999999999992   2233344444444568889999884 4667765554 5799


Q ss_pred             EEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCc---eeeEEEeeccccceeEEEEee
Q 046226          309 YWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGR---HTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       309 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      |.|++..   ......+++|.+.|.+++|.   ..+++++++|..+.+||+.....   ..++..+. -.+.|..+.|++
T Consensus       270 iLDiR~P---~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  270 ILDIRVP---CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS  345 (364)
T ss_pred             EEEecCC---CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence            9999744   34455788999999999996   56999999999999999987532   12233333 467899999997


Q ss_pred             cccCCCCCCcccEEEEeecCCeEEE
Q 046226          383 GRFGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       383 ~~~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                      ..        +..|+.+.. +++.|
T Consensus       346 ~~--------~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  346 SQ--------PDWIAICFG-KKLEI  361 (364)
T ss_pred             cC--------CCEEEEEec-CeeeE
Confidence            74        567776653 34443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.87  E-value=4.9e-21  Score=160.60  Aligned_cols=246  Identities=15%  Similarity=0.221  Sum_probs=183.4

Q ss_pred             EEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc-------eeEeeccCCCccEEEEEEeCC---EEEEEEcCC
Q 046226           86 SSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF-------TECGRLKAKTSMVVAMEVSHD---RVYAAYGDG  152 (434)
Q Consensus        86 ~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg  152 (434)
                      ..+.||+++|..++|   +++.||+|+.|.+|.||.+...       +.+..+.+|...|--++|+|.   .|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            346789999999999   8999999999999999998653       456678899999999999995   899999999


Q ss_pred             eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc
Q 046226          153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI  232 (434)
Q Consensus       153 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  232 (434)
                      .|.+|++.+++....+                       .|...|.++.|+.+|.+|++.+.|..|+|||.++++.+..-
T Consensus       155 ~v~iWnv~tgeali~l-----------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~  211 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITL-----------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG  211 (472)
T ss_pred             eEEEEeccCCceeeec-----------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence            9999999988776665                       49999999999999999999999999999999999999988


Q ss_pred             ccCcc-CeEEEEEcCCCeEEEEe----CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEE-EcCCCe
Q 046226          233 QAHSE-PINALVVADDGVLYSAS----DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG-GCTDGY  306 (434)
Q Consensus       233 ~~~~~-~v~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~  306 (434)
                      .+|.+ .-..+.|-.++.+++.+    .+..+-+||.......   .....+.. ...|.-=-|++|.+.++. |-.|+.
T Consensus       212 ~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP---~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  212 VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP---IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc---ceeEEecc-CCceEEeeecCCCCEEEEEecCCcc
Confidence            77865 23345566677555554    4678999997632222   22223332 334555557787776654 556999


Q ss_pred             EEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226          307 IHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       307 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      |+.|.+.....-..+..++... .+-..+.+-++.-+-.+.....++|.+.+.
T Consensus       288 IRYyEit~d~P~~hyln~f~S~-epQRG~g~mPKRGl~Vs~cEI~rfyKl~~~  339 (472)
T KOG0303|consen  288 IRYFEITNEPPFVHYLNTFSSK-EPQRGMGFMPKRGLDVSKCEIARFYKLHER  339 (472)
T ss_pred             eEEEEecCCCceeEEecccccC-CccccccccccccccchHHHHHHHHHhhcc
Confidence            9999987665545555444332 344556665555444555555666666554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=1.6e-20  Score=160.33  Aligned_cols=268  Identities=13%  Similarity=0.138  Sum_probs=191.7

Q ss_pred             ecCCCceeEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEEeecCCCCCce-eeEeeeccCCCCceeEEEecccccc
Q 046226          117 WKQPEFTECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDNGVK-HVKLATIPKTGGAVRNLIVGKDKMM  191 (434)
Q Consensus       117 wd~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  191 (434)
                      .|+.+......++.+..+|++++|+|.    .+++|..-|.|-+||+...+... .+.                   .+.
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~-------------------~f~  231 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY-------------------LFT  231 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE-------------------Eec
Confidence            344455555667778999999999995    67777779999999996332211 111                   112


Q ss_pred             CcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccc
Q 046226          192 KHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFY  267 (434)
Q Consensus       192 ~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~  267 (434)
                      .|..+|.++.|+|. -..+++.+.||+|++-|++....  +..+......+..+.++.+. .++.+..=|...+||++..
T Consensus       232 ~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~  311 (498)
T KOG4328|consen  232 PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTD  311 (498)
T ss_pred             cCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecC
Confidence            69999999999995 46799999999999999987643  33333345567788888777 6777777779999999832


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEE
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVIS  344 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s  344 (434)
                           ......+..|...|.+++++|- ..+|++++.|++.+|||++.........-..-.|...|.+..|+  +..|++
T Consensus       312 -----~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T  386 (498)
T KOG4328|consen  312 -----GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT  386 (498)
T ss_pred             -----CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe
Confidence                 2223345567779999999995 46789999999999999986655553222334788888887776  446999


Q ss_pred             ecCCCcEEEEeccC-CCceeeEEEeecccc------ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          345 GSADSTSRVWAREQ-DGRHTMLAVLVGHRG------PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       345 ~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~------~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      .+.|..|+|||..- +....++..+. |..      ......|.|+         ..+|++|-.-..|-|+|-+.++.++
T Consensus       387 T~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~---------~~li~vg~~~r~IDv~~~~~~q~v~  456 (498)
T KOG4328|consen  387 TCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPD---------YNLIVVGRYPRPIDVFDGNGGQMVC  456 (498)
T ss_pred             eccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCC---------ccEEEEeccCcceeEEcCCCCEEee
Confidence            99999999999841 11112333322 221      2334677777         8999999999999999988777444


Q ss_pred             c
Q 046226          418 G  418 (434)
Q Consensus       418 ~  418 (434)
                      .
T Consensus       457 e  457 (498)
T KOG4328|consen  457 E  457 (498)
T ss_pred             e
Confidence            3

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.1e-20  Score=165.58  Aligned_cols=272  Identities=16%  Similarity=0.220  Sum_probs=191.3

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC--------ceeEeeccCCCccEEEEEEeCC--EEE
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE--------FTECGRLKAKTSMVVAMEVSHD--RVY  146 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~l~~~~~--~l~  146 (434)
                      .+.|..-.++..|.+.|..++|  ....|++++.||+|++|+++.        .+.+.++.+|.++|.|+++.++  .++
T Consensus       281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y  360 (577)
T KOG0642|consen  281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY  360 (577)
T ss_pred             heecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence            4457777789999999999999  678999999999999999932        4678889999999999999887  899


Q ss_pred             EEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC
Q 046226          147 AAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS  226 (434)
Q Consensus       147 ~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  226 (434)
                      +|+.||+|+.|++........            ..........+.||.+.|+.+++++....|++++.||+++.|+....
T Consensus       361 sgg~Dg~I~~w~~p~n~dp~d------------s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~  428 (577)
T KOG0642|consen  361 SGGIDGTIRCWNLPPNQDPDD------------SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE  428 (577)
T ss_pred             eeccCceeeeeccCCCCCccc------------ccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence            999999999998752211100            01111122345589999999999999999999999999999998665


Q ss_pred             eeEEEcccC--ccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEE----EecccccCeEEEEEecCCCEE
Q 046226          227 KCIETIQAH--SEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLIL----TLTAKYSPVKTLTLTLDDGLL  298 (434)
Q Consensus       227 ~~~~~~~~~--~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l  298 (434)
                      .. .++...  .+.-.++.+-...  ..++.   ...+.+++.............    ........+..+.++|...+.
T Consensus       429 ~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~  504 (577)
T KOG0642|consen  429 SP-CTFGEPKEHGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT  504 (577)
T ss_pred             Cc-cccCCccccCCcceEeeccchhHhhhhh---cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence            54 334332  2233455554332  22222   233333332111111111110    011122457788899999999


Q ss_pred             EEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecccc
Q 046226          299 YGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG  373 (434)
Q Consensus       299 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  373 (434)
                      +++..|+.|+++|...    ..+......|...+++++++  |-+|++++.||.+++|.+...   .++.....|..
T Consensus       505 ~~~hed~~Ir~~dn~~----~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~es~~~r~  574 (577)
T KOG0642|consen  505 FTAHEDRSIRFFDNKT----GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVLESTAHRK  574 (577)
T ss_pred             EecccCCceecccccc----cccchheeeccceecceeecCCCceEEeecCCceeehhhccch---heeeccccccc
Confidence            9999999999999653    34445566888889998886  559999999999999999765   66666555543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=4.6e-18  Score=159.12  Aligned_cols=284  Identities=28%  Similarity=0.500  Sum_probs=216.8

Q ss_pred             EEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce-eEeeccCCCc-cEEEEEE-eCC---EEEEEEc-CCeEEEe
Q 046226           87 SVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT-ECGRLKAKTS-MVVAMEV-SHD---RVYAAYG-DGKIRVW  157 (434)
Q Consensus        87 ~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~l~~-~~~---~l~~~s~-dg~i~vw  157 (434)
                      .+..|...|.++.+  .+..++.++.|+.+.+|+..... ....+..+.. .+..+.+ .++   .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            46679999999999  78889989999999999998876 6666666443 6777777 554   3334344 8999999


Q ss_pred             ecCC-CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEcccC
Q 046226          158 RSTW-DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       158 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~  235 (434)
                      +... .......                      ..|...|..++|+|++..+++++. |+.+++|++..+..+..+..|
T Consensus       140 ~~~~~~~~~~~~----------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (466)
T COG2319         140 DLSTPGKLIRTL----------------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH  197 (466)
T ss_pred             EecCCCeEEEEE----------------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC
Confidence            9876 2222222                      269999999999999999988885 999999999998889999999


Q ss_pred             ccCeEEEEEcCCC-eEEEE-eCCCeEEEEecccccCcceeEEEE-EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226          236 SEPINALVVADDG-VLYSA-SDDATVRVWRRYFYSENQLHTLIL-TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK  312 (434)
Q Consensus       236 ~~~v~~~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  312 (434)
                      ...|.+++++|++ .++.+ +.|+.|++||..      ...... .+..|.... ...|++++.++++++.|+.+++|++
T Consensus       198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~  270 (466)
T COG2319         198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS------TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDL  270 (466)
T ss_pred             CCceEEEEEcCCcceEEEEecCCCcEEEEECC------CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeee
Confidence            9999999999888 34444 999999999765      222233 466666664 3389999989999999999999998


Q ss_pred             CcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEEEe--eccccceeEEEEeecccCCC
Q 046226          313 GWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLAVL--VGHRGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~  388 (434)
                      ........   ...+|...+.++.+.+  ..+++++.|+.+++|+.....   .....  ..|...+..+.+ +..    
T Consensus       271 ~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~----  339 (466)
T COG2319         271 RSSSSLLR---TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK---LLSSLTLKGHEGPVSSLSF-SPD----  339 (466)
T ss_pred             cCCCcEEE---EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc---eEEEeeecccCCceEEEEE-CCC----
Confidence            75544111   1157788899888875  677778889999999888763   33333  478888888988 531    


Q ss_pred             CCCcccEEEEe-ecCCeEEEEecCCCC
Q 046226          389 TEDEYCTICTG-SLDGVLKMWRVTRPK  414 (434)
Q Consensus       389 ~~~~~~~l~s~-~~Dg~v~iw~~~~~~  414 (434)
                          +..++.+ ..|+.+.+|++....
T Consensus       340 ----~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         340 ----GSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             ----CCEEEEeecCCCcEEeeecCCCc
Confidence                2455555 688999999998776

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.8e-20  Score=161.62  Aligned_cols=222  Identities=14%  Similarity=0.169  Sum_probs=159.1

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeec-cCCCccEEEEEEeCC----EEEEEEcC
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRL-KAKTSMVVAMEVSHD----RVYAAYGD  151 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~----~l~~~s~d  151 (434)
                      ++.......|.||+|-|.|+.|  +|.+|++|++|-.+.|||....+++..+ .+|...|.++.|-|.    .+++|+.|
T Consensus        37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence            4445566779999999999999  9999999999999999999888887776 579999999999884    78899999


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCee--
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKC--  228 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~--  228 (434)
                      ..|+++|+...+.-..            -.........+..|...|.-++..|++ ..+.++++||+|+-+|++....  
T Consensus       117 k~i~lfdl~~~~~~~~------------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~  184 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGM------------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN  184 (758)
T ss_pred             ceEEEEeccccccccc------------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence            9999999974321110            001111111234699999999999988 7899999999999999986321  


Q ss_pred             -----EE---EcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCc----ce--e-------EEEEEecccc--
Q 046226          229 -----IE---TIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSEN----QL--H-------TLILTLTAKY--  283 (434)
Q Consensus       229 -----~~---~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~----~~--~-------~~~~~~~~~~--  283 (434)
                           ..   .+...--...|+.++|..  +|+.|+.|-..++||.+..-..    ..  .       .......+|.  
T Consensus       185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn  264 (758)
T KOG1310|consen  185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN  264 (758)
T ss_pred             ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence                 11   111122356789999987  9999999999999995411000    00  0       0001111111  


Q ss_pred             ---------cCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226          284 ---------SPVKTLTLTLDDGLLYGGCTDGYIHYWHK  312 (434)
Q Consensus       284 ---------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  312 (434)
                               ..++-+.|+|+|.-|++.-..-.|++||+
T Consensus       265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence                     12566789999988888777778888874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.9e-21  Score=182.52  Aligned_cols=239  Identities=16%  Similarity=0.185  Sum_probs=187.3

Q ss_pred             ccEEEEEE--cC----CEEEEEeCCCeEEEecCCC------ceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEe
Q 046226           93 GQILCIAV--GN----GFIYTGSDSNVIRIWKQPE------FTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVW  157 (434)
Q Consensus        93 ~~v~~~~~--~~----~~l~tg~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vw  157 (434)
                      .+-+.++|  .+    .+||.|..||.|.+||...      ...+.+...|.+.|..+.|++.   .|++|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            34567888  22    3699999999999999765      2345567789999999999984   88999999999999


Q ss_pred             ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEcccCc
Q 046226          158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQAHS  236 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  236 (434)
                      |+...+......                    .....+.|.+++|+.. ...|++++.+|.+.|||++..+.+-.+..+.
T Consensus       145 Dlnn~~tP~~~~--------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~  204 (1049)
T KOG0307|consen  145 DLNKPETPFTPG--------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP  204 (1049)
T ss_pred             ccCCcCCCCCCC--------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC
Confidence            998644322221                    0135678999999865 4567889999999999999988887777655


Q ss_pred             c--CeEEEEEcCCC--eEEEEeCC---CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC-CEEEEEcCCCeEE
Q 046226          237 E--PINALVVADDG--VLYSASDD---ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-GLLYGGCTDGYIH  308 (434)
Q Consensus       237 ~--~v~~~~~~~~~--~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~  308 (434)
                      .  .+..++|+|+.  .+++++.|   -.|.+||+|     ........+.+|...|.++.|++.+ ++|++++.|+.|.
T Consensus       205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR-----~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii  279 (1049)
T KOG0307|consen  205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR-----FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII  279 (1049)
T ss_pred             CccceeeeeeCCCCceeeeeecCCCCCceeEeeccc-----ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence            4  47789999998  77777665   369999998     3344556678999999999999966 8899999999999


Q ss_pred             EEEcCcccccccccCcccCcccceEEEEeeC---CEEEEecCCCcEEEEeccCCC
Q 046226          309 YWHKGWFSAQLQYGGALQGHTHAVMCLASVA---NYVISGSADSTSRVWAREQDG  360 (434)
Q Consensus       309 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~  360 (434)
                      +|+.++.+    ....+......+..+.|.+   ..+++++.||.|.||.+....
T Consensus       280 ~wN~~tgE----vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  280 CWNPNTGE----VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             EecCCCce----EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            99976543    3344555667888888874   489999999999999998753

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=3.7e-19  Score=163.53  Aligned_cols=274  Identities=12%  Similarity=0.110  Sum_probs=195.1

Q ss_pred             CCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecc
Q 046226          111 SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK  187 (434)
Q Consensus       111 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
                      ++.+.||++.........-.-...|.++.|+|.   .++.|+.+|.|.+||++.........+..               
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~---------------  285 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA---------------  285 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc---------------
Confidence            347999999876333333334677999999874   88888889999999998765521111100               


Q ss_pred             ccccCcCCCeEEEEEecCC--CEEEEEecCCcEEEEEcCCCee------EEEcc------cCccCeEEEEEcCCC--eEE
Q 046226          188 DKMMKHMGPITSIAINVSD--DTLYSASLDKTIKVWRIRDSKC------IETIQ------AHSEPINALVVADDG--VLY  251 (434)
Q Consensus       188 ~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~------~~~~~------~~~~~v~~~~~~~~~--~l~  251 (434)
                       ....|..+|..+.|..+.  .-|++++.||.|+.|+++....      .....      .....++++.|.+..  .++
T Consensus       286 -~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi  364 (555)
T KOG1587|consen  286 -LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI  364 (555)
T ss_pred             -ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence             112599999999998654  4499999999999998864322      11111      123468899998876  899


Q ss_pred             EEeCCCeEEEEecccccCc--ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc
Q 046226          252 SASDDATVRVWRRYFYSEN--QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT  329 (434)
Q Consensus       252 s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  329 (434)
                      .|+.+|.|..-+.......  ...+.......|.++|+++.++|-+..++..+.|.+++||....   .......+..+.
T Consensus       365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~---~~~Pl~~~~~~~  441 (555)
T KOG1587|consen  365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV---IASPLLSLDSSP  441 (555)
T ss_pred             EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC---CCCcchhhhhcc
Confidence            9999999887433211111  12233456677889999999999776666655699999998642   222223445666


Q ss_pred             cceEEEEeeCC---EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEE
Q 046226          330 HAVMCLASVAN---YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK  406 (434)
Q Consensus       330 ~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~  406 (434)
                      ..+++++|++.   .|+++..||.|.+||+..... .++....-+....+.+.|++.         |++|+.|+..|+++
T Consensus       442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~---------g~~lavGd~~G~~~  511 (555)
T KOG1587|consen  442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPN---------GKLLAVGDANGTTH  511 (555)
T ss_pred             ceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCcccccccccccceeecCCC---------CcEEEEecCCCcEE
Confidence            77999999854   899999999999999987532 455555555666777888887         89999999999999


Q ss_pred             EEecCCC
Q 046226          407 MWRVTRP  413 (434)
Q Consensus       407 iw~~~~~  413 (434)
                      +|++...
T Consensus       512 ~~~l~~~  518 (555)
T KOG1587|consen  512 ILKLSES  518 (555)
T ss_pred             EEEcCch
Confidence            9999643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.4e-19  Score=147.75  Aligned_cols=241  Identities=13%  Similarity=0.144  Sum_probs=166.0

Q ss_pred             EEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226          135 VVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA  212 (434)
Q Consensus       135 v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  212 (434)
                      ..|+.|++.  +|++|+.||.|.|||+.+...-+.+                      .+|..+|.+++|+++|+.|+++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l----------------------saH~~pi~sl~WS~dgr~Llts   83 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML----------------------SAHVRPITSLCWSRDGRKLLTS   83 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhh----------------------hccccceeEEEecCCCCEeeee
Confidence            788999985  8999999999999999876543333                      2699999999999999999999


Q ss_pred             ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecc--cccCeEE
Q 046226          213 SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTA--KYSPVKT  288 (434)
Q Consensus       213 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~  288 (434)
                      +.|..|.+||+..|.+++.+. ...+|....|+|..  ..++.-.+..-.+-++.   . .....+..-..  .+....+
T Consensus        84 S~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s---~-~~h~~Lp~d~d~dln~sas~  158 (405)
T KOG1273|consen   84 SRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS---D-PKHSVLPKDDDGDLNSSASH  158 (405)
T ss_pred             cCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEec---C-CceeeccCCCcccccccccc
Confidence            999999999999999998887 67899999999876  44444444334444433   0 11111111100  0112233


Q ss_pred             EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc-cceEEEE--eeCCEEEEecCCCcEEEEeccCC------
Q 046226          289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT-HAVMCLA--SVANYVISGSADSTSRVWAREQD------  359 (434)
Q Consensus       289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~------  359 (434)
                      ..|.+.|+++++|...|.+.+||..+.+...    .++-.. ..|..+.  ..|++|++-+.|..||.|+++.-      
T Consensus       159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~va----s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~  234 (405)
T KOG1273|consen  159 GVFDRRGKYIITGTSKGKLLVYDAETLECVA----SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD  234 (405)
T ss_pred             ccccCCCCEEEEecCcceEEEEecchheeee----eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence            4688899999999999999999976543322    222222 3455544  45889999999999999998731      


Q ss_pred             CceeeEEEeec--cccceeEEEEeecccCCCCCCcccEEEEeec-CCeEEEEecCCCCc
Q 046226          360 GRHTMLAVLVG--HRGPIRCAIAFLGRFGEETEDEYCTICTGSL-DGVLKMWRVTRPKS  415 (434)
Q Consensus       360 ~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-Dg~v~iw~~~~~~~  415 (434)
                      ...++.+.++.  ..-.=.+++|+.+         |.+++.++. -..++||.-..|..
T Consensus       235 ~e~e~~~K~qDvVNk~~Wk~ccfs~d---------geYv~a~s~~aHaLYIWE~~~GsL  284 (405)
T KOG1273|consen  235 GEVEPEHKLQDVVNKLQWKKCCFSGD---------GEYVCAGSARAHALYIWEKSIGSL  284 (405)
T ss_pred             CCcChhHHHHHHHhhhhhhheeecCC---------ccEEEeccccceeEEEEecCCcce
Confidence            11111111111  1112235667766         888887764 45799999887754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=2.9e-19  Score=144.12  Aligned_cols=274  Identities=18%  Similarity=0.223  Sum_probs=195.0

Q ss_pred             CCCeEEEecCCCce--e-EeeccCCCccEEEEEEeCC---EEEEEEcC-------CeEEEeecCCCCCceeeEeeeccCC
Q 046226          110 DSNVIRIWKQPEFT--E-CGRLKAKTSMVVAMEVSHD---RVYAAYGD-------GKIRVWRSTWDNGVKHVKLATIPKT  176 (434)
Q Consensus       110 ~dg~i~iwd~~~~~--~-~~~~~~~~~~v~~l~~~~~---~l~~~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~~  176 (434)
                      .|+.|.+.++..+.  . ...+..|.+.|+.++-+|-   .|+++..+       -.+.||.+.........      .+
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~------~t  111 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS------ST  111 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc------ch
Confidence            36778877765432  2 2346678899999999884   45555442       34678987644322110      00


Q ss_pred             CCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee-EEEcc-----cCccCeEEEEEcC--CC
Q 046226          177 GGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC-IETIQ-----AHSEPINALVVAD--DG  248 (434)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~  248 (434)
                      -..+..+..      .+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+.     .+....++-+|+|  ++
T Consensus       112 lE~v~~Ldt------eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg  184 (370)
T KOG1007|consen  112 LECVASLDT------EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG  184 (370)
T ss_pred             hhHhhcCCH------HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence            011111111      3556899999999999999887 88999999987655 33332     2455678888998  44


Q ss_pred             eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC-EEEEEcCCCeEEEEEcCcccccccccCcccC
Q 046226          249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGGCTDGYIHYWHKGWFSAQLQYGGALQG  327 (434)
Q Consensus       249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  327 (434)
                      ..+....|+++..||++.     ..+.......|...+..+.|.|+.+ +|++++.||.|+|||.+..+..   ...+.+
T Consensus       185 nqv~tt~d~tl~~~D~RT-----~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~el~~  256 (370)
T KOG1007|consen  185 NQVATTSDSTLQFWDLRT-----MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQELPG  256 (370)
T ss_pred             ceEEEeCCCcEEEEEccc-----hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc---ccccCC
Confidence            566667889999999982     2223334456778899999999765 6788899999999999754433   457889


Q ss_pred             cccceEEEEee---CCEEEEecCCCcEEEEeccCCC---------------------c-----eeeEEEeeccccceeEE
Q 046226          328 HTHAVMCLASV---ANYVISGSADSTSRVWAREQDG---------------------R-----HTMLAVLVGHRGPIRCA  378 (434)
Q Consensus       328 ~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~---------------------~-----~~~~~~~~~h~~~v~~~  378 (434)
                      |...|+++.|+   .+++++|+.|..|.+|....-.                     +     ...+.++..|.+.|+++
T Consensus       257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~  336 (370)
T KOG1007|consen  257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL  336 (370)
T ss_pred             CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence            99999999997   4589999999999999653211                     0     12345778899999999


Q ss_pred             EEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          379 IAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       379 ~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      +|+...        .-++|+-+.||.+.|=++..
T Consensus       337 aWSsad--------PWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  337 AWSSAD--------PWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             eeccCC--------CeeEEEeccCceEEeecCCh
Confidence            999653        67899999999999977664

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.84  E-value=1.4e-18  Score=142.30  Aligned_cols=238  Identities=13%  Similarity=0.138  Sum_probs=174.7

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC---ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE---FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST  160 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~  160 (434)
                      +.---.+|+|.+|  +...+|++-....|.||....   .+...+++.|...|+.++|+|.  +|++++.|..-+||...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            3334678999999  889999999999999998754   4577889999999999999995  99999999999999874


Q ss_pred             CC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE----EcccC
Q 046226          161 WD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE----TIQAH  235 (434)
Q Consensus       161 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~  235 (434)
                      .+ .....+.                    +..++..++++.|+|.++.|++|+....|.||-++...--.    .-+.+
T Consensus        86 ~~~~Wkptlv--------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi  145 (361)
T KOG1523|consen   86 SGGTWKPTLV--------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI  145 (361)
T ss_pred             CCCeecccee--------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence            33 2222221                    12589999999999999999999999999999887644321    22346


Q ss_pred             ccCeEEEEEcCCC-eEEEEeCCCeEEEEeccccc------------CcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226          236 SEPINALVVADDG-VLYSASDDATVRVWRRYFYS------------ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       236 ~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  302 (434)
                      ...|+++.|+|++ +|++|+.|+..|+|......            ......++..+....+.+..+.|+|+|..|+-.+
T Consensus       146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~  225 (361)
T KOG1523|consen  146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG  225 (361)
T ss_pred             ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence            7789999999999 99999999999999754111            1111222333334567899999999999999999


Q ss_pred             CCCeEEEEEcCcccccccccCcccCcccceEEEEe-eCCEEEEecCC
Q 046226          303 TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-VANYVISGSAD  348 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~d  348 (434)
                      .|+.+.+-|..........   .....-+..++.| +.+.++.++.|
T Consensus       226 Hds~v~~~da~~p~~~v~~---~~~~~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  226 HDSTVSFVDAAGPSERVQS---VATAQLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             CCCceEEeecCCCchhccc---hhhccCCceeeEeecCCceeecCCC
Confidence            9999999987644322221   1122234455555 33444444444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=2e-19  Score=158.71  Aligned_cols=290  Identities=16%  Similarity=0.154  Sum_probs=220.2

Q ss_pred             CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccc-----eeeeEEEeeccccEEEEEE----cCCEE
Q 046226           35 PSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSS-----YRCISSVLKKDGQILCIAV----GNGFI  105 (434)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~----~~~~l  105 (434)
                      ++...+.+-|....-.+.+|...+.+....+.+.-+++++.+++++.     ++|++++. -.+.|.|++|    +-..|
T Consensus       380 Psp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vL  458 (733)
T KOG0650|consen  380 PSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVL  458 (733)
T ss_pred             CChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeE
Confidence            34445555667777789999999999988899999999999987654     56677665 4568999999    34455


Q ss_pred             EEEeCCCeEEEecCCCc-------------------------------------eeEeeccCCCccEEEEEEeCC--EEE
Q 046226          106 YTGSDSNVIRIWKQPEF-------------------------------------TECGRLKAKTSMVVAMEVSHD--RVY  146 (434)
Q Consensus       106 ~tg~~dg~i~iwd~~~~-------------------------------------~~~~~~~~~~~~v~~l~~~~~--~l~  146 (434)
                      |++-.+. +.|-+..-|                                     .-+...-.|...|..+.|+..  +|+
T Consensus       459 AvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla  537 (733)
T KOG0650|consen  459 AVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA  537 (733)
T ss_pred             EEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence            5554443 444432111                                     001122236778999999875  787


Q ss_pred             EEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc
Q 046226          147 AAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI  223 (434)
Q Consensus       147 ~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  223 (434)
                      +...   ...|.|.++........+                      ....+.|.++.|+|...+|++++ -..|++||+
T Consensus       538 tV~~~~~~~~VliHQLSK~~sQ~PF----------------------~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL  594 (733)
T KOG0650|consen  538 TVMPDSGNKSVLIHQLSKRKSQSPF----------------------RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDL  594 (733)
T ss_pred             EeccCCCcceEEEEecccccccCch----------------------hhcCCceeEEEecCCCceEEEEe-ccceEEEeh
Confidence            7765   467888887655443333                      24667899999999999999998 467999999


Q ss_pred             CCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226          224 RDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  302 (434)
                      .....++.+......|..++++|.| .|+.++.|+.+..+|+.     ...+....+..|...+++++|++.-.++++|+
T Consensus       595 ~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDld-----lsskPyk~lr~H~~avr~Va~H~ryPLfas~s  669 (733)
T KOG0650|consen  595 SKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD-----LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGS  669 (733)
T ss_pred             hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc-----cCcchhHHhhhhhhhhhhhhhccccceeeeec
Confidence            9888888888788899999999999 99999999999999987     23345566778999999999999999999999


Q ss_pred             CCCeEEEEEcCccc-----ccccccCcccCcccc----eEEEEeeCC--EEEEecCCCcEEEE
Q 046226          303 TDGYIHYWHKGWFS-----AQLQYGGALQGHTHA----VMCLASVAN--YVISGSADSTSRVW  354 (434)
Q Consensus       303 ~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~----v~~~~~~~~--~l~s~~~dg~i~iw  354 (434)
                      .||.+.||--.-..     ........+.+|...    |....|++.  +|++++.||+|++|
T Consensus       670 dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  670 DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            99999998633221     223445677888766    788888876  89999999999998

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=9.7e-21  Score=172.92  Aligned_cols=288  Identities=20%  Similarity=0.271  Sum_probs=212.9

Q ss_pred             CCCCCc-ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEE
Q 046226           73 SSSPET-SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYA  147 (434)
Q Consensus        73 ~~~~~~-~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~  147 (434)
                      .+.+.+ +...+-+..+.+|..+|+|..|  .|.++++|+.|..|+||..+++.++....+|.+.|+.++.+.+  .+++
T Consensus       170 ~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaa  249 (1113)
T KOG0644|consen  170 IAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAA  249 (1113)
T ss_pred             ecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhh
Confidence            334443 3444556678999999999999  7999999999999999999999999999999999999999886  7888


Q ss_pred             EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe
Q 046226          148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK  227 (434)
Q Consensus       148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  227 (434)
                      ++.|..|++|.+..+..+..+                      .+|.+.|++++|+|-.    +.+.||++++||.+- .
T Consensus       250 aS~D~vIrvWrl~~~~pvsvL----------------------rghtgavtaiafsP~~----sss~dgt~~~wd~r~-~  302 (1113)
T KOG0644|consen  250 ASNDKVIRVWRLPDGAPVSVL----------------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-E  302 (1113)
T ss_pred             cccCceEEEEecCCCchHHHH----------------------hccccceeeeccCccc----cCCCCCceEeccccc-c
Confidence            899999999998877665554                      3799999999999854    777899999999872 1


Q ss_pred             eEEEc----c-cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEE
Q 046226          228 CIETI----Q-AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYG  300 (434)
Q Consensus       228 ~~~~~----~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  300 (434)
                      .+...    + .....+.++.+...+ .+++++.|+.-..|..........            .+.-+..+. ...+.++
T Consensus       303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~------------~lif~t~ssd~~~~~~~  370 (1113)
T KOG0644|consen  303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSN------------LLIFVTRSSDLSSIVVT  370 (1113)
T ss_pred             ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhcc------------ceEEEecccccccccee
Confidence            11111    1 123456667777777 899999999999987651111111            111111111 1246667


Q ss_pred             EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE
Q 046226          301 GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC  377 (434)
Q Consensus       301 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  377 (434)
                      +-.+-.+.+|++..    ..+.+.+.+|...+..+.++   .....+++.||...|||+-.+-..+.  .+.+| +.+..
T Consensus       371 ar~~~~~~vwnl~~----g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~--y~~gh-~kl~d  443 (1113)
T KOG0644|consen  371 ARNDHRLCVWNLYT----GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH--YFIGH-GKLVD  443 (1113)
T ss_pred             eeeeeEeeeeeccc----chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee--eeccc-ceeec
Confidence            77788899999753    33445666888888888765   56788999999999999988732222  22454 45666


Q ss_pred             EEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      -+|+++         |..++....-|.++|.....++.
T Consensus       444 ~kFSqd---------gts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  444 GKFSQD---------GTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             cccCCC---------CceEecCCCCCceEEeccCCCcc
Confidence            789988         88899888889999988776654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=1.8e-17  Score=149.04  Aligned_cols=272  Identities=13%  Similarity=0.117  Sum_probs=171.3

Q ss_pred             EEEeCCCeEEEecCCC-ce--eEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          106 YTGSDSNVIRIWKQPE-FT--ECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       106 ~tg~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      ++...|+.|++|++.+ ++  .+..+. +.+....++++|+  .|++++ .++.|.+|++.....+......        
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--------   76 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--------   76 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--------
Confidence            3446789999999964 32  444454 3455778899987  666654 4889999998632222211100        


Q ss_pred             eeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCC-C---eeEEEcccCccCeEEEEEcCCC-eE-EE
Q 046226          180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRD-S---KCIETIQAHSEPINALVVADDG-VL-YS  252 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~-~---~~~~~~~~~~~~v~~~~~~~~~-~l-~s  252 (434)
                                  ........++|+|++++|++++. ++.|.+|++++ +   +.+..+. +.....+++++|++ ++ ++
T Consensus        77 ------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~  143 (330)
T PRK11028         77 ------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVP  143 (330)
T ss_pred             ------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEe
Confidence                        12234578999999999988764 78999999964 2   2233332 23446778899998 55 55


Q ss_pred             EeCCCeEEEEecccccCcceeE---EEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCcccccccccCcccC-
Q 046226          253 ASDDATVRVWRRYFYSENQLHT---LILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQLQYGGALQG-  327 (434)
Q Consensus       253 ~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~-  327 (434)
                      ...++.|.+||+...  .....   ...... .......+.|+|++++++++.. ++.|.+||+.......+....+.. 
T Consensus       144 ~~~~~~v~v~d~~~~--g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~  220 (330)
T PRK11028        144 CLKEDRIRLFTLSDD--GHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM  220 (330)
T ss_pred             eCCCCEEEEEEECCC--CcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence            566799999998721  11100   001111 2245678999999999988876 899999998642222221111111 


Q ss_pred             -----cccceEEE--EeeCCEEEEec-CCCcEEEEeccCCC-ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEE
Q 046226          328 -----HTHAVMCL--ASVANYVISGS-ADSTSRVWAREQDG-RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICT  398 (434)
Q Consensus       328 -----~~~~v~~~--~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  398 (434)
                           +......+  ..++++++++. .++.|.+|++...+ ....+...... .....+.++|+         |++|++
T Consensus       221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~d---------g~~l~v  290 (330)
T PRK11028        221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHS---------GKYLIA  290 (330)
T ss_pred             CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCC---------CCEEEE
Confidence                 11112233  45677888775 47899999997643 22233333221 24557889988         888887


Q ss_pred             eec-CCeEEEEecCC
Q 046226          399 GSL-DGVLKMWRVTR  412 (434)
Q Consensus       399 ~~~-Dg~v~iw~~~~  412 (434)
                      +.. +++|.+|+++.
T Consensus       291 a~~~~~~v~v~~~~~  305 (330)
T PRK11028        291 AGQKSHHISVYEIDG  305 (330)
T ss_pred             EEccCCcEEEEEEcC
Confidence            665 89999999864

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.83  E-value=8.3e-19  Score=143.70  Aligned_cols=267  Identities=14%  Similarity=0.153  Sum_probs=192.2

Q ss_pred             CCCCCCCCCCCccCCCCCCCcccceeeeEE-----------------Eee-ccccEEEEEE---------cCCEEEEEeC
Q 046226           58 LSSPRHPFNPTAAAGSSSPETSSSYRCISS-----------------VLK-KDGQILCIAV---------GNGFIYTGSD  110 (434)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-h~~~v~~~~~---------~~~~l~tg~~  110 (434)
                      ......++++..+.+.+.+..+..|+.-..                 ++- ..+.|...+|         +.+++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            445566778887777777776665555322                 111 2345777777         4568999999


Q ss_pred             CCeEEEecCCCceeEeeccC--CCc---cEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCc-eeeEeeeccCCCCceeEE
Q 046226          111 SNVIRIWKQPEFTECGRLKA--KTS---MVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAVRNL  183 (434)
Q Consensus       111 dg~i~iwd~~~~~~~~~~~~--~~~---~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~  183 (434)
                      |.-|++||..+++....+.+  |..   ...+++|+|| .-+.++....|+++|+...... ........          
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~----------  201 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK----------  201 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc----------
Confidence            99999999999998877654  333   4578999998 4455667889999998543222 11111000          


Q ss_pred             EeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC-CCeEE
Q 046226          184 IVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD-DATVR  260 (434)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~i~  260 (434)
                           .-.+..+-|.|++|+|-. +.++.|+....+-||.-..+.++..+.+|.+.|+.+.|.++| .|++|.. |..|.
T Consensus       202 -----~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl  276 (406)
T KOG2919|consen  202 -----GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL  276 (406)
T ss_pred             -----ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence                 012457789999999954 589999999999999988899999999999999999999999 8888874 78899


Q ss_pred             EEecccccCcceeEEEEEeccccc-CeEE--EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226          261 VWRRYFYSENQLHTLILTLTAKYS-PVKT--LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS  337 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  337 (434)
                      .||++     ....++..+..|.. .-..  ....|++++|++|+.||.|++||+.....   ....+..+...+..+++
T Consensus       277 ~WDiR-----~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn---~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  277 CWDIR-----YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN---EVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             EEeeh-----hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC---cccccccccccccceec
Confidence            99998     34444555555544 2223  44567899999999999999999865332   23355678888888888


Q ss_pred             eCC--EEEEecC
Q 046226          338 VAN--YVISGSA  347 (434)
Q Consensus       338 ~~~--~l~s~~~  347 (434)
                      ++-  ++++++.
T Consensus       349 nP~mpilatssG  360 (406)
T KOG2919|consen  349 NPIMPILATSSG  360 (406)
T ss_pred             CcccceeeeccC
Confidence            876  5555553

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.83  E-value=4e-18  Score=162.20  Aligned_cols=304  Identities=17%  Similarity=0.257  Sum_probs=198.0

Q ss_pred             CcccceeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc-------eeEeeccCCCccEEEEEEeC--CE
Q 046226           77 ETSSSYRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF-------TECGRLKAKTSMVVAMEVSH--DR  144 (434)
Q Consensus        77 ~~~~~~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~~~--~~  144 (434)
                      +....+..+..+..|+..|..++.   ++.+++||+.||+|++||....       +...++......+.++...+  +.
T Consensus      1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            335566778889999999999998   5689999999999999997541       22233333456677766655  58


Q ss_pred             EEEEEcCCeEEEeecCCCCCceee-EeeeccCCCCceeEEEeccccccCcCCCe-EEEEEec-CCC-EEEEEecCCcEEE
Q 046226          145 VYAAYGDGKIRVWRSTWDNGVKHV-KLATIPKTGGAVRNLIVGKDKMMKHMGPI-TSIAINV-SDD-TLYSASLDKTIKV  220 (434)
Q Consensus       145 l~~~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~-~~~-~l~s~~~dg~i~v  220 (434)
                      +++++.||.|++.+++..+..+.. .....++.               ...+.+ ..-+|.. .+. .++.+...+.|..
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~---------------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL---------------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccc---------------cCCCceEEeecccccccceeEEEEEeccceEE
Confidence            999999999999998763211111 00000000               122223 3333332 233 6788888899999


Q ss_pred             EEcCCCeeEEEccc--CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe-cccccCeEEEEEecC--
Q 046226          221 WRIRDSKCIETIQA--HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL-TAKYSPVKTLTLTLD--  294 (434)
Q Consensus       221 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--  294 (434)
                      ||++......+++.  ..+.|++++.+|.+ .++.|+..|.+.+||++      ....+... ..+..++..+..+|-  
T Consensus      1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR------F~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR------FRVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred             ecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEee------cCceeecccCcccCCcceEEeeccCC
Confidence            99988776666553  46789999999999 99999999999999999      33333322 233467888887773  


Q ss_pred             -CCEEEEE-c-CCCeEEEEEcCcccccccccCc---------cc-------CcccceEEEEee-CCEEEEecCCCcEEEE
Q 046226          295 -DGLLYGG-C-TDGYIHYWHKGWFSAQLQYGGA---------LQ-------GHTHAVMCLASV-ANYVISGSADSTSRVW  354 (434)
Q Consensus       295 -~~~l~~~-~-~dg~i~i~d~~~~~~~~~~~~~---------~~-------~~~~~v~~~~~~-~~~l~s~~~dg~i~iw  354 (434)
                       ....+++ . ..+.|.+|++.++.....+...         ..       +....+.|.-.+ +..+++|+.|..||.|
T Consensus      1252 ~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1252 QESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred             CCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeec
Confidence             2344444 3 5788999998765433222111         00       111122222223 4589999999999999


Q ss_pred             eccCCCce--------------------------ee-------------------EEE--------eeccccceeEEEEe
Q 046226          355 AREQDGRH--------------------------TM-------------------LAV--------LVGHRGPIRCAIAF  381 (434)
Q Consensus       355 d~~~~~~~--------------------------~~-------------------~~~--------~~~h~~~v~~~~~~  381 (434)
                      |.......                          +.                   ...        -..|.++|+++++.
T Consensus      1332 D~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~ 1411 (1431)
T KOG1240|consen 1332 DPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATL 1411 (1431)
T ss_pred             cCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhh
Confidence            97532110                          00                   000        01466778877776


Q ss_pred             ecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          382 LGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       382 ~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      ...        ..+|++++.||.|+||.
T Consensus      1412 ~~~--------q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1412 KSE--------QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             ccC--------ccEEEEecCCCeeeecC
Confidence            553        56999999999999995

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.6e-19  Score=158.28  Aligned_cols=260  Identities=18%  Similarity=0.279  Sum_probs=175.6

Q ss_pred             eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe
Q 046226          126 GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN  203 (434)
Q Consensus       126 ~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  203 (434)
                      .++..|...|..++|.+-  .|++|+.||.|++|++.........       .-..+.       .+.+|.++|.|+++.
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~-------~~epi~-------tfraH~gPVl~v~v~  353 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEK-------DVEPIL-------TFRAHEGPVLCVVVP  353 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcccc-------ceeeeE-------EEecccCceEEEEec
Confidence            356678889999999885  8999999999999999321110000       001111       234799999999999


Q ss_pred             cCCCEEEEEecCCcEEEEEcCCC----------eeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce
Q 046226          204 VSDDTLYSASLDKTIKVWRIRDS----------KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       204 ~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      +++..+++|+-||+|+.|++...          .....+.+|.+.|..+++++.. .|++++.||+++.|+..   +...
T Consensus       354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~---~~~~  430 (577)
T KOG0642|consen  354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT---EESP  430 (577)
T ss_pred             CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC---CcCc
Confidence            99999999999999999966421          2345677899999999999887 99999999999999876   1111


Q ss_pred             eEEEEEecccccCeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccccC-cccC--cccceEEEEee--CCEEEEec
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQYGG-ALQG--HTHAVMCLASV--ANYVISGS  346 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~--~~~~v~~~~~~--~~~l~s~~  346 (434)
                        .........+...++.+-... .+.++...-+.-.++++........+.. ...+  ....+.-+.+.  +.+.+++.
T Consensus       431 --~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h  508 (577)
T KOG0642|consen  431 --CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH  508 (577)
T ss_pred             --cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc
Confidence              111111222333444443322 1222222222222333221111111100 0000  11223333443  45899999


Q ss_pred             CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          347 ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      .|+.|+++|..++   ..+.....|...++++++.|+         |.+|++++.||.|++|++......
T Consensus       509 ed~~Ir~~dn~~~---~~l~s~~a~~~svtslai~~n---------g~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  509 EDRSIRFFDNKTG---KILHSMVAHKDSVTSLAIDPN---------GPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             cCCceeccccccc---ccchheeeccceecceeecCC---------CceEEeecCCceeehhhccchhee
Confidence            9999999999988   888888999999999999999         999999999999999999866543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=1.8e-18  Score=145.32  Aligned_cols=207  Identities=18%  Similarity=0.243  Sum_probs=155.5

Q ss_pred             ccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCC-------eeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeE
Q 046226          190 MMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDS-------KCIETIQAHSEPINALVVADDG--VLYSASDDATV  259 (434)
Q Consensus       190 ~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i  259 (434)
                      +.+|.++|..++|+|. ...|++|++|.+|.||++..+       +++..+.+|...|--++|+|..  .|++++.|..|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            3489999999999994 567899999999999998653       4677889999999999999987  89999999999


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccc--eEEEE-
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHA--VMCLA-  336 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--v~~~~-  336 (434)
                      .+||+.      .......+. |...|.++.|+.+|.+|++.+.|..|+|||.+......+-    .+|.+.  ...+- 
T Consensus       157 ~iWnv~------tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~----~~heG~k~~Raifl  225 (472)
T KOG0303|consen  157 SIWNVG------TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG----VAHEGAKPARAIFL  225 (472)
T ss_pred             EEEecc------CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec----ccccCCCcceeEEe
Confidence            999987      333444444 9999999999999999999999999999998765544332    344432  22222 


Q ss_pred             eeCCEEEEec---CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE-EEeecCCeEEEEecCC
Q 046226          337 SVANYVISGS---ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI-CTGSLDGVLKMWRVTR  412 (434)
Q Consensus       337 ~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg~v~iw~~~~  412 (434)
                      -++..+.+|-   .+..+-+||..+-.....+.++....+-+ -=-+.++         ..+| ++|-.|+.|+.|.+.+
T Consensus       226 ~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl-~PFyD~d---------t~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  226 ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL-LPFYDPD---------TSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             ccCceeeeccccccccceeccCcccccCcceeEEeccCCceE-EeeecCC---------CCEEEEEecCCcceEEEEecC
Confidence            2466555553   47789999988876555566665544432 2223344         4444 5566799999999998


Q ss_pred             CCccc
Q 046226          413 PKSSC  417 (434)
Q Consensus       413 ~~~~~  417 (434)
                      ..+..
T Consensus       296 d~P~~  300 (472)
T KOG0303|consen  296 EPPFV  300 (472)
T ss_pred             CCcee
Confidence            87543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=1.9e-17  Score=138.22  Aligned_cols=227  Identities=14%  Similarity=0.169  Sum_probs=166.9

Q ss_pred             CCCCCCCccCCCCCCCcccceeeeE-----EEeeccccEEEEEEcCCEEEEEeCCC--eEEEecCCCceeEeeccCCCcc
Q 046226           62 RHPFNPTAAAGSSSPETSSSYRCIS-----SVLKKDGQILCIAVGNGFIYTGSDSN--VIRIWKQPEFTECGRLKAKTSM  134 (434)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~~~~  134 (434)
                      .+..+...+..++.++. +.+++-.     ......-.|.-+-|...++|..+.+.  .+++.+++....+..+. ....
T Consensus        12 ~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~   89 (391)
T KOG2110|consen   12 GFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTS   89 (391)
T ss_pred             eeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCc
Confidence            35555666666665542 1222211     11112334555666778877776654  59999998888887765 3567


Q ss_pred             EEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE--
Q 046226          135 VVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA--  212 (434)
Q Consensus       135 v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--  212 (434)
                      |.++.++.++|+++-.+. |.|||++..+.+..+...                   ..+...+.++.++..+.+++--  
T Consensus        90 IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~-------------------~~n~~gl~AlS~n~~n~ylAyp~s  149 (391)
T KOG2110|consen   90 ILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETT-------------------PPNPKGLCALSPNNANCYLAYPGS  149 (391)
T ss_pred             eEEEEEccceEEEEEccc-EEEEecccceeehhhhcc-------------------CCCccceEeeccCCCCceEEecCC
Confidence            999999999988887766 999999887766665321                   1356667788888778888843  


Q ss_pred             ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCe-EEEEecccccCcceeEEEEEecc--cccCeEE
Q 046226          213 SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDAT-VRVWRRYFYSENQLHTLILTLTA--KYSPVKT  288 (434)
Q Consensus       213 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~  288 (434)
                      ...|.|.+||+.+.+.+..+..|.+.+.+++|+++| +|+++++.|+ |||+.+.      ..+....++.  ....|.+
T Consensus       150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~------~G~kl~eFRRG~~~~~IyS  223 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP------EGQKLYEFRRGTYPVSIYS  223 (391)
T ss_pred             CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC------CccEeeeeeCCceeeEEEE
Confidence            346899999999999999999999999999999999 9999999997 7899886      2222222222  2346889


Q ss_pred             EEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          289 LTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                      ++|++++++|++.+..++|++|.+....
T Consensus       224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  224 LSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEECCCCCeEEEecCCCeEEEEEecccc
Confidence            9999999999999999999999986443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.82  E-value=5e-18  Score=137.17  Aligned_cols=258  Identities=16%  Similarity=0.163  Sum_probs=183.1

Q ss_pred             ceeEeeccCCCccEEEEEEeC----C-EEEEEEc----CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccC
Q 046226          122 FTECGRLKAKTSMVVAMEVSH----D-RVYAAYG----DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK  192 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~----~-~l~~~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (434)
                      .+.+..+..+ -.+.++.|+.    + +|+.|+.    .+.|.|..+.........             .      ....
T Consensus        35 ~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~-------------~------a~fd   94 (364)
T KOG0290|consen   35 RKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVE-------------D------ANFD   94 (364)
T ss_pred             cceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceec-------------c------CCCC
Confidence            3444445443 3578888873    2 7888775    455666554421110000             0      0136


Q ss_pred             cCCCeEEEEEecCCC-----EEEEEecCCcEEEEEcCCCe----eEEEc-----ccCccCeEEEEEcCCC--eEEEEeCC
Q 046226          193 HMGPITSIAINVSDD-----TLYSASLDKTIKVWRIRDSK----CIETI-----QAHSEPINALVVADDG--VLYSASDD  256 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~-----~l~s~~~dg~i~vwd~~~~~----~~~~~-----~~~~~~v~~~~~~~~~--~l~s~~~d  256 (434)
                      |.-+++.+.|.|+..     +|++.+  -.+++|.+...+    +...+     ..+..++++..|+.-.  ++.+++-|
T Consensus        95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD  172 (364)
T KOG0290|consen   95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID  172 (364)
T ss_pred             CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence            999999999999863     455544  479999987321    11111     2356789999998655  89999999


Q ss_pred             CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEE
Q 046226          257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL  335 (434)
Q Consensus       257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  335 (434)
                      -+..|||+...   ........+..|...|..++|...+ +.+++.+.||.|++||++........... .....+...+
T Consensus       173 TTCTiWdie~~---~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~-p~~~~pLlRL  248 (364)
T KOG0290|consen  173 TTCTIWDIETG---VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED-PSPSTPLLRL  248 (364)
T ss_pred             CeEEEEEEeec---cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC-CCCCCcceee
Confidence            99999999822   2334556677899999999999854 57889999999999999865543322221 2224577888


Q ss_pred             Eee---CCEEEEecCC-CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          336 ASV---ANYVISGSAD-STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       336 ~~~---~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      +|+   .+++|+-..| ..|.|.|++...  .++..+++|.+.|+.++|.|..        ...|+|+|.|..+.|||+.
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H~a~VNgIaWaPhS--------~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNHQASVNGIAWAPHS--------SSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCC--cceehhhcCcccccceEecCCC--------CceeeecCCcceEEEEecc
Confidence            886   5688876665 479999998753  6888999999999999999996        8899999999999999998


Q ss_pred             CCCc
Q 046226          412 RPKS  415 (434)
Q Consensus       412 ~~~~  415 (434)
                      ..-.
T Consensus       319 q~~~  322 (364)
T KOG0290|consen  319 QMPR  322 (364)
T ss_pred             cccc
Confidence            6543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=3e-16  Score=146.81  Aligned_cols=294  Identities=26%  Similarity=0.440  Sum_probs=212.9

Q ss_pred             CCcccce------eeeEEEeeccccEEEEEE--cCCEEEEEeC-CCeEEEecCCCceeEeeccCCCccEEEEEEeCCE--
Q 046226           76 PETSSSY------RCISSVLKKDGQILCIAV--GNGFIYTGSD-SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDR--  144 (434)
Q Consensus        76 ~~~~~~~------~~~~~~~~h~~~v~~~~~--~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~--  144 (434)
                      +..+..|      .....+..|...|.+++|  ++..+++++. |+.+++|+...+..+..+..|...|.+++|+|+.  
T Consensus       133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence            5555555      455678889999999999  6778888885 9999999999988888899999999999999872  


Q ss_pred             EEEE-EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc
Q 046226          145 VYAA-YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI  223 (434)
Q Consensus       145 l~~~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  223 (434)
                      ++++ +.|+.|++||...+.....                     .+.+|...+ ...|++++..+++++.|+.+++|++
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~~~~---------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~  270 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKLLRS---------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDL  270 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcEEee---------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeee
Confidence            4554 7899999997763333321                     112466665 4489999989999999999999999


Q ss_pred             CCCee-EEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226          224 RDSKC-IETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       224 ~~~~~-~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      ..... +..+..|...+.++.+.|++ .+++++.|+.+.+||....   ....... ...|...+..+.+.+++..++.+
T Consensus       271 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         271 RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG---KLLSSLT-LKGHEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             cCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC---ceEEEee-ecccCCceEEEEECCCCCEEEEe
Confidence            87664 44446788999999999966 7777888888999987611   1111111 34566678889883332455555


Q ss_pred             -cCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC-CEEE-EecCCCcEEEEeccCCCceeeEEEeeccccceeEE
Q 046226          302 -CTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA-NYVI-SGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCA  378 (434)
Q Consensus       302 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~  378 (434)
                       ..|+.+.+|++.... ...   ...... .+..+.+.. ..+. .+..++.+.+|+....   ........+...+...
T Consensus       347 ~~~d~~~~~~~~~~~~-~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  418 (466)
T COG2319         347 GSDDGTIRLWDLRTGK-PLK---TLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG---SLLRNLDGHTSRVTSL  418 (466)
T ss_pred             ecCCCcEEeeecCCCc-eeE---EecCCc-eEEEEEECCCCCEEEEecCCCceEEEecccC---eeeeeccCCCCcEEEE
Confidence             688999999987554 111   111111 144444433 2333 4788999999999986   4444443333778888


Q ss_pred             EEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          379 IAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       379 ~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      .+.++         +..+++++.++.+++|+...
T Consensus       419 ~~~~~---------~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         419 DFSPD---------GKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EECCC---------CcEEEEecCCCcEEEEeccC
Confidence            88888         88899999999999999987

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=1.1e-18  Score=156.11  Aligned_cols=261  Identities=13%  Similarity=0.117  Sum_probs=193.3

Q ss_pred             CCCCCCCCCCCCccCCCCCCCc----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccC
Q 046226           57 PLSSPRHPFNPTAAAGSSSPET----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKA  130 (434)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  130 (434)
                      .+....+.|++..+.-++.+..    ...+..++++++|.+.|+|++|  +|..+|+|+.|..|.+|+-+-... .. ..
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-Lk-YS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LK-YS   91 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-ee-ec
Confidence            5667777888888877776543    4456678999999999999999  999999999999999998543222 22 35


Q ss_pred             CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE
Q 046226          131 KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT  208 (434)
Q Consensus       131 ~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  208 (434)
                      |.+.|.|+.|+|-  .|++++- ...-+|........+.                        .....|.+.+|..||++
T Consensus        92 H~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~------------------------kss~R~~~CsWtnDGqy  146 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH------------------------KSSSRIICCSWTNDGQY  146 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhh------------------------hhheeEEEeeecCCCcE
Confidence            8999999999995  5666654 3467887654332221                        24457889999999999


Q ss_pred             EEEEecCCcEEEEEcCCCeeEEEc---ccCccCeEEEEEcCCC------eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226          209 LYSASLDKTIKVWRIRDSKCIETI---QAHSEPINALVVADDG------VLYSASDDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       209 l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      |+.|-.||+|.+-+-. ++....+   .+...+|.+++|+|..      .++......++.++.+.       .+.+..-
T Consensus       147 lalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-------G~~Igk~  218 (1081)
T KOG1538|consen  147 LALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-------GKQIGKD  218 (1081)
T ss_pred             EEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-------ceeeccc
Confidence            9999999999998753 4333333   3467899999999853      67777888888888765       2222222


Q ss_pred             cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEecc
Q 046226          280 TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWARE  357 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~  357 (434)
                      ....-...++.+.++|.+++.|+.|+.+++|--     ......++......|+.++.  ++++++.|+.||+|..|++-
T Consensus       219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-----~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-----DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ccCCCCchhheeccCCcEEEEccCCCceEEEee-----cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            233345678999999999999999999999963     22333344445567777765  57799999999999999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=8.8e-19  Score=155.80  Aligned_cols=251  Identities=17%  Similarity=0.176  Sum_probs=178.9

Q ss_pred             EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCC
Q 046226          148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDS  226 (434)
Q Consensus       148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~  226 (434)
                      ++..|.|.||+++....+..--+..                  .-....|+++.|.| |...|+++++||.|++|.+..+
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~------------------l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~  660 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPG------------------LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN  660 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccc------------------cccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence            4567999999997654432211111                  12556799999998 6778999999999999998653


Q ss_pred             -------eeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226          227 -------KCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL  297 (434)
Q Consensus       227 -------~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  297 (434)
                             .+...+..|...|+++.|+|-.  .|++++.|-+|++||+.      .......+.+|.+.|..++|+|+|+.
T Consensus       661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~------~~~~~~~l~gHtdqIf~~AWSpdGr~  734 (1012)
T KOG1445|consen  661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA------NAKLYSRLVGHTDQIFGIAWSPDGRR  734 (1012)
T ss_pred             CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh------hhhhhheeccCcCceeEEEECCCCcc
Confidence                   3456778899999999999966  89999999999999998      44455678899999999999999999


Q ss_pred             EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCC----CcEEEEeccCCCceeeEEEeecccc
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSAD----STSRVWAREQDGRHTMLAVLVGHRG  373 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~  373 (434)
                      +++.+.||+|++|+.+.............+..+.-.-++.+|+++++.+.|    ..|.+||..+-.. ..+.       
T Consensus       735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~-------  806 (1012)
T KOG1445|consen  735 IATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLY-------  806 (1012)
T ss_pred             eeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-Ccce-------
Confidence            999999999999998766555544333444444445566789988777765    4688888765311 1111       


Q ss_pred             ceeEEEEeecccCCCCCCc-ccEEEEeecCCeEEEEecCCCCcc---ccccccccCceeEee
Q 046226          374 PIRCAIAFLGRFGEETEDE-YCTICTGSLDGVLKMWRVTRPKSS---CGHLNKTNGHEYFEL  431 (434)
Q Consensus       374 ~v~~~~~~~~~~~~~~~~~-~~~l~s~~~Dg~v~iw~~~~~~~~---~~~~~~~~g~~~~~~  431 (434)
                       ...+...|...-+.+..| +-++++|-.|..|.+|++-...+.   +.+.....+|..+.|
T Consensus       807 -t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~f  867 (1012)
T KOG1445|consen  807 -TQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAF  867 (1012)
T ss_pred             -eeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceee
Confidence             122333333333333333 557889999999999999877654   233344455555543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.8e-16  Score=146.51  Aligned_cols=253  Identities=17%  Similarity=0.171  Sum_probs=165.6

Q ss_pred             cccCCCCCCCCCCCCCccCCCCCCC----cccceeeeEEEeeccccEEEEEE---cC--CEEEEEeCCCeEEEecCCCce
Q 046226           53 LHTSPLSSPRHPFNPTAAAGSSSPE----TSSSYRCISSVLKKDGQILCIAV---GN--GFIYTGSDSNVIRIWKQPEFT  123 (434)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~---~~--~~l~tg~~dg~i~iwd~~~~~  123 (434)
                      +.+..-..+.++++.+.+.......    ...+..|+..+.+|..+++.+.+   ..  .++++++.||.|++||...+.
T Consensus        14 g~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~   93 (792)
T KOG1963|consen   14 GRNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE   93 (792)
T ss_pred             cccceecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence            3344445556666666666554332    25567888999999999999999   22  688899999999999999998


Q ss_pred             eEeeccCCCccEEEEEEeC--------------C--EEEEEEc--CCeEEEeecCCCC-----Cceee---EeeeccCCC
Q 046226          124 ECGRLKAKTSMVVAMEVSH--------------D--RVYAAYG--DGKIRVWRSTWDN-----GVKHV---KLATIPKTG  177 (434)
Q Consensus       124 ~~~~~~~~~~~v~~l~~~~--------------~--~l~~~s~--dg~i~vwd~~~~~-----~~~~~---~~~~~~~~~  177 (434)
                      ++.++..+- ++..+.+.+              +  .+.+.+.  .+.++-+.+.+..     .....   +...... .
T Consensus        94 Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~  171 (792)
T KOG1963|consen   94 LLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-S  171 (792)
T ss_pred             EEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-C
Confidence            888765432 233333321              1  1111111  1222222211100     00000   0000000 0


Q ss_pred             Ccee-----------------EEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC----CeeEEEcccCc
Q 046226          178 GAVR-----------------NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD----SKCIETIQAHS  236 (434)
Q Consensus       178 ~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~  236 (434)
                      +...                 ........-..|.-.+++.+++|.++++++|..||.|.+|.--.    ......+.-|.
T Consensus       172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~  251 (792)
T KOG1963|consen  172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH  251 (792)
T ss_pred             ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence            0000                 11122223345777899999999999999999999999996432    12345667799


Q ss_pred             cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          237 EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       237 ~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      ..|+++.|+++| +|++|+..|.+.+|.+...      . ...++.-.++|..+.++||+.+.+....|..|.+....+
T Consensus       252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~------~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETG------K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             cccceeEEecCCceEeecccceEEEEEeecCC------C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            999999999999 9999999999999987611      1 223444567999999999999999999999999998643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=1.8e-17  Score=152.49  Aligned_cols=231  Identities=18%  Similarity=0.246  Sum_probs=167.1

Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCee-
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKC-  228 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~-  228 (434)
                      ++.+.+|++.........                      ......|.|++|+|. ..+++.|+.+|.|.+||++.+.. 
T Consensus       221 ~~~~~vW~~~~p~~Pe~~----------------------~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~  278 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELV----------------------LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT  278 (555)
T ss_pred             CceEEEEecCCCCCceEE----------------------EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC
Confidence            457899998766322222                      136778999999995 56778889999999999987654 


Q ss_pred             -EEEc----ccCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEec------ccccCeEEEEEec-
Q 046226          229 -IETI----QAHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTLT------AKYSPVKTLTLTL-  293 (434)
Q Consensus       229 -~~~~----~~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~-  293 (434)
                       ...+    ..|..++..+.|..+.   .+++++.||.|..|+++...............      .....++++.|.+ 
T Consensus       279 ~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~  358 (555)
T KOG1587|consen  279 PPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT  358 (555)
T ss_pred             CCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC
Confidence             2222    3488899999997655   59999999999999987443322221111111      2234688899988 


Q ss_pred             CCCEEEEEcCCCeEEEEEcCcccccc----cccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEE
Q 046226          294 DDGLLYGGCTDGYIHYWHKGWFSAQL----QYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLA  366 (434)
Q Consensus       294 ~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (434)
                      +-..+++|+.+|.|..=+-.......    +.......|.++|.++.++   ...+++++ |.+++||......  .++.
T Consensus       359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~--~Pl~  435 (555)
T KOG1587|consen  359 DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA--SPLL  435 (555)
T ss_pred             CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC--Ccch
Confidence            55689999999999874322222222    2233556788899999876   45666666 9999999987321  6777


Q ss_pred             EeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       367 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      .+..+...|++++|||.+        ...++++..||.|.|||+....
T Consensus       436 ~~~~~~~~v~~vaWSptr--------pavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  436 SLDSSPDYVTDVAWSPTR--------PAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             hhhhccceeeeeEEcCcC--------ceEEEEEcCCCceehhhhhccc
Confidence            778888889999999997        7789999999999999997543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=6.4e-18  Score=139.55  Aligned_cols=195  Identities=16%  Similarity=0.228  Sum_probs=155.1

Q ss_pred             CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC-C--eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226          207 DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-G--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY  283 (434)
Q Consensus       207 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  283 (434)
                      ..++++..+|.|++||..+++.+..++++...++.+.|..+ +  .+.+|+.||+|++||+|.....    .......+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~----a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES----ARISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh----hheeccCCC
Confidence            56888889999999999999999999999999999999864 3  8999999999999999932222    222233333


Q ss_pred             -cCeEEEEEecCCCEEEEEcC----CCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEe
Q 046226          284 -SPVKTLTLTLDDGLLYGGCT----DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWA  355 (434)
Q Consensus       284 -~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd  355 (434)
                       .+..+++..-.++.+++|++    +-.|.+||++.....  +..-...|...|+++.|.   ++.|++|+.||.|.|||
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD  194 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD  194 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence             46667777667788888865    678999999865543  223456899999999996   56999999999999999


Q ss_pred             ccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          356 REQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ++.......+...-.|...|.++.|..+.        .+.|.+-+.+++..+|+++.+..
T Consensus       195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~--------ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  195 TKKDNEEDALLHVINHGSSIHLIGWLSKK--------YKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             cCCCcchhhHHHhhcccceeeeeeeecCC--------cceEEEEEccCceeEEEccCCCh
Confidence            98765445555555678889999999774        56799999999999999998874

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=9.2e-20  Score=166.64  Aligned_cols=247  Identities=17%  Similarity=0.281  Sum_probs=194.2

Q ss_pred             eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (434)
                      +.+..+.+|-..|+|+.|...  ++++++.|..++||...+..+....                      .+|.+.|+.+
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~----------------------rGhs~ditdl  238 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC----------------------RGHSGDITDL  238 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC----------------------CCCccccchh
Confidence            344567789999999999875  8999999999999998776655554                      3899999999


Q ss_pred             EEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226          201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLT  280 (434)
Q Consensus       201 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  280 (434)
                      +.+.++.++++++.|..|++|-+.++.++..+.+|++.|++++|+|-.   +.+.||++++||.+...........  ..
T Consensus       239 avs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~--~~  313 (1113)
T KOG0644|consen  239 AVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPL--KF  313 (1113)
T ss_pred             ccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCC--Cc
Confidence            999999999999999999999999999999999999999999999864   7889999999998711111110000  11


Q ss_pred             ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEecc
Q 046226          281 AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       281 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~  357 (434)
                      .....+.++.+...+..+++++.|+.-..|.+...          ..+...+.-+...   ..+.+++-.+..+++|++.
T Consensus       314 ~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~  383 (1113)
T KOG0644|consen  314 TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY  383 (1113)
T ss_pred             ccccceeeeeccccccccccccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeecc
Confidence            12245677888888899999999999888865311          1222222222222   2467777788999999999


Q ss_pred             CCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          358 QDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       358 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      ++   ..+..+.+|...+..+.++|-+        .....+++.||...|||+-.+.+..
T Consensus       384 ~g---~l~H~l~ghsd~~yvLd~Hpfn--------~ri~msag~dgst~iwdi~eg~pik  432 (1113)
T KOG0644|consen  384 TG---QLLHNLMGHSDEVYVLDVHPFN--------PRIAMSAGYDGSTIIWDIWEGIPIK  432 (1113)
T ss_pred             cc---hhhhhhcccccceeeeeecCCC--------cHhhhhccCCCceEeeecccCCcce
Confidence            98   7888889999999999999975        6678899999999999999887654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=1.6e-17  Score=145.00  Aligned_cols=259  Identities=17%  Similarity=0.158  Sum_probs=180.7

Q ss_pred             eccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEE-e---------CCEEEEEEcCCeEEEee
Q 046226           90 KKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV-S---------HDRVYAAYGDGKIRVWR  158 (434)
Q Consensus        90 ~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-~---------~~~l~~~s~dg~i~vwd  158 (434)
                      .|...|.|+.| ...-++..++|..+.+|.-.+......++.....|....+ -         .+.++.++.||.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            36677778888 5555555566666666654443333333322222221111 1         13688999999999886


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP  238 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  238 (434)
                      -. +...+.+                      ..|.+.+.+-.|+|||.-|+++++||.|++|. ++|-...++.....+
T Consensus        92 k~-~rVE~sv----------------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   92 KS-ARVERSI----------------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEES  147 (737)
T ss_pred             cc-chhhhhh----------------------hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCce
Confidence            32 1111111                      26999999999999999999999999999998 466666666667789


Q ss_pred             eEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          239 INALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       239 v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                      |+|++|.|+.  .+++.+  +.+.+=-+.      ....+.....|.+-|.++.|++..+++++|++|-..++||-.   
T Consensus       148 v~c~~W~p~S~~vl~c~g--~h~~IKpL~------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~---  216 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQG--GHISIKPLA------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ---  216 (737)
T ss_pred             eEEEEECCCCCceEEecC--CeEEEeecc------cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc---
Confidence            9999999998  444444  344443333      344556788999999999999999999999999999999952   


Q ss_pred             ccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE
Q 046226          317 AQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI  396 (434)
Q Consensus       317 ~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  396 (434)
                        ......-..|..+|++++|+++.++..+.-+++|+              -....+.|..++|++|         |..+
T Consensus       217 --G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~--------------~~p~~GSifnlsWS~D---------GTQ~  271 (737)
T KOG1524|consen  217 --GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARF--------------SSPRVGSIFNLSWSAD---------GTQA  271 (737)
T ss_pred             --CcccccCChhccceeeeeeccccceeeeeeeeeee--------------cCCCccceEEEEEcCC---------Ccee
Confidence              22223455788999999999764433333334441              1245678999999999         9999


Q ss_pred             EEeecCCeEEEE
Q 046226          397 CTGSLDGVLKMW  408 (434)
Q Consensus       397 ~s~~~Dg~v~iw  408 (434)
                      +.|...|.|.+=
T Consensus       272 a~gt~~G~v~~A  283 (737)
T KOG1524|consen  272 TCGTSTGQLIVA  283 (737)
T ss_pred             eccccCceEEEe
Confidence            999999987663

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=9.4e-18  Score=133.79  Aligned_cols=295  Identities=13%  Similarity=0.117  Sum_probs=197.1

Q ss_pred             CCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeee-----EEEe-eccccEEEEEE-cCCEEEEEeCCCeEEEe
Q 046226           45 PRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCI-----SSVL-KKDGQILCIAV-GNGFIYTGSDSNVIRIW  117 (434)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~h~~~v~~~~~-~~~~l~tg~~dg~i~iw  117 (434)
                      |...-.++.|.+.+++..+.-+.+ +.++...+.+..|...     ..+. .|...|+.+.. .++.|.+-+.|+.+.+|
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILW   82 (323)
T ss_pred             CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEE
Confidence            344445668888888888876665 6666667776666553     2344 46778888888 77899999999999999


Q ss_pred             cCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCC-eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCC
Q 046226          118 KQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDG-KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGP  196 (434)
Q Consensus       118 d~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (434)
                      ++.-...+.   .|.-.++++.|.+--+...+... ..-.++-+.......       ..+..........+...+..+.
T Consensus        83 ~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~-------~D~g~~tqv~i~dd~~~~Klgs  152 (323)
T KOG0322|consen   83 TIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHK-------QDGGDTTQVQIADDSERSKLGS  152 (323)
T ss_pred             EccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhh-------hccCccceeEccCchhccccCc
Confidence            987644332   35556677777665444433322 222222211111000       0011111111122222345667


Q ss_pred             eEEEEEec-CCC--EEEEEecCCcEEEEEcCCCe----------eEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEE
Q 046226          197 ITSIAINV-SDD--TLYSASLDKTIKVWRIRDSK----------CIETIQAHSEPINALVVADDG-VLYSASDDATVRVW  262 (434)
Q Consensus       197 v~~~~~~~-~~~--~l~s~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iw  262 (434)
                      +.|..+.. ++.  ++++|.++|.+.+||+.++.          .+.....|..+|.++.+.+.. .=++|+.+..+..|
T Consensus       153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY  232 (323)
T ss_pred             eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence            77777533 233  46688899999999999873          344445689999999998655 66788888899999


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--  340 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--  340 (434)
                      ++....+....  .......+..+..+.+-||++.+++++.|+.|+||..++.    .....+.-|...|.+++|+++  
T Consensus       233 Sl~~s~gslq~--~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl----~pLAVLkyHsagvn~vAfspd~~  306 (323)
T KOG0322|consen  233 SLNHSTGSLQI--RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL----NPLAVLKYHSAGVNAVAFSPDCE  306 (323)
T ss_pred             eeccccCcccc--cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC----CchhhhhhhhcceeEEEeCCCCc
Confidence            98733222222  2223334467888999999999999999999999997644    334566789999999999854  


Q ss_pred             EEEEecCCCcEEEEec
Q 046226          341 YVISGSADSTSRVWAR  356 (434)
Q Consensus       341 ~l~s~~~dg~i~iwd~  356 (434)
                      .+++++.|++|.+|++
T Consensus       307 lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  307 LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhccCCceEEeeec
Confidence            8999999999999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.1e-16  Score=124.75  Aligned_cols=240  Identities=15%  Similarity=0.169  Sum_probs=169.2

Q ss_pred             EEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226          135 VVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA  212 (434)
Q Consensus       135 v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  212 (434)
                      |..-+++|.  ++++|..+|.|.+..+..-......     ++....+.       ..++|.++|..++|+  ..+|++|
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-----~~gk~~iv-------~eqahdgpiy~~~f~--d~~Lls~   78 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-----PPGKLKIV-------PEQAHDGPIYYLAFH--DDFLLSG   78 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC-----CCCCccee-------eccccCCCeeeeeee--hhheeec
Confidence            444566665  7889999999999988643211110     01111111       124799999999998  5678887


Q ss_pred             ecCCcEEEEEcCCCee------EEEcc--cC-----ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226          213 SLDKTIKVWRIRDSKC------IETIQ--AH-----SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       213 ~~dg~i~vwd~~~~~~------~~~~~--~~-----~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  278 (434)
                      + ||.|+-|..+....      +...+  -|     -..|+++...|.. -++.++.|+.++.||+.      ..++...
T Consensus        79 g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE------~G~i~r~  151 (325)
T KOG0649|consen   79 G-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE------DGRIQRE  151 (325)
T ss_pred             c-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec------CCEEEEE
Confidence            7 69999997654221      11111  12     2368889888776 66667799999999998      6778889


Q ss_pred             ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc-----cCcccCcc-cceEEEEeeCCEEEEecCCCcEE
Q 046226          279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY-----GGALQGHT-HAVMCLASVANYVISGSADSTSR  352 (434)
Q Consensus       279 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~-~~v~~~~~~~~~l~s~~~dg~i~  352 (434)
                      +++|.+.+.++.--.....+++|++||++++||.++.+.....     ...+..|. ..|.+++.+.+++++|+ .-.+.
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~ls  230 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLS  230 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCcee
Confidence            9999999999998666677999999999999999876543221     12233333 46889999999999887 45799


Q ss_pred             EEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       353 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      +|+++..   ++...+. -..++..+.|..+           .++++|....|.-|.+.
T Consensus       231 lwhLrss---e~t~vfp-ipa~v~~v~F~~d-----------~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  231 LWHLRSS---ESTCVFP-IPARVHLVDFVDD-----------CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EEeccCC---CceEEEe-cccceeEeeeecc-----------eEEEeccccceeeeeec
Confidence            9999987   4444332 2455677778754           78888888888888876

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1e-16  Score=136.35  Aligned_cols=201  Identities=18%  Similarity=0.202  Sum_probs=147.9

Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226          198 TSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI  276 (434)
Q Consensus       198 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~  276 (434)
                      .+++|+.+|..+++|+.||++++|+......+.....|...|.++.|+||+ +|++.+.| ..+||+......-...   
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~---  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK---  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc---
Confidence            789999999999999999999999988888888888899999999999999 99999999 8999998732111100   


Q ss_pred             EEecccccCeEEEEEecCC---C--EEEEEcCCCeEEEEEcCccccc--ccccCcccCcccceEEEEe--eCCEEEEecC
Q 046226          277 LTLTAKYSPVKTLTLTLDD---G--LLYGGCTDGYIHYWHKGWFSAQ--LQYGGALQGHTHAVMCLAS--VANYVISGSA  347 (434)
Q Consensus       277 ~~~~~~~~~v~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  347 (434)
                       +-.........+.|+.++   .  .++.....+.|+.||+......  ....+.... ...|.+|+.  +|++++.|+.
T Consensus       224 -t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  224 -TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             -CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEEEEecc
Confidence             001223345567777665   2  2333344667888776544332  111112222 235677766  5889999999


Q ss_pred             CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          348 DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       348 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ||.|-|++..+-.  .....-+.|...|+.+.|+|+         .+++++.+.|....+..+.-.+.
T Consensus       302 dGsVai~~~~~lq--~~~~vk~aH~~~VT~ltF~Pd---------sr~~~svSs~~~~~v~~l~vd~~  358 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQ--RLQYVKEAHLGFVTGLTFSPD---------SRYLASVSSDNEAAVTKLAVDKT  358 (398)
T ss_pred             CCcEEEEEeceee--eeEeehhhheeeeeeEEEcCC---------cCcccccccCCceeEEEEeeccc
Confidence            9999999998762  222344689999999999999         88999999999999998876443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=8.8e-17  Score=151.07  Aligned_cols=245  Identities=18%  Similarity=0.302  Sum_probs=170.1

Q ss_pred             cccEEEEEE----cCCEEEEEeCCCeEEEecC-CC----ceeEeeccC---C----CccEEEEEEeC--CEEEEEEcCCe
Q 046226           92 DGQILCIAV----GNGFIYTGSDSNVIRIWKQ-PE----FTECGRLKA---K----TSMVVAMEVSH--DRVYAAYGDGK  153 (434)
Q Consensus        92 ~~~v~~~~~----~~~~l~tg~~dg~i~iwd~-~~----~~~~~~~~~---~----~~~v~~l~~~~--~~l~~~s~dg~  153 (434)
                      ...|+.+.+    |..+|++|+.||.||||+- .+    .+.+..+.+   +    .+.=.-+.|..  ..|++++.-..
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence            346899998    5679999999999999963 22    233332221   1    11112344544  37777777899


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCe---eE
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSK---CI  229 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~---~~  229 (434)
                      |+|||......+..+..                     +...-|+++.-+. .|+.+++|..||.|++||.+...   .+
T Consensus      1189 IRIWDa~~E~~~~diP~---------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPY---------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred             EEEEecccceeEeeccc---------------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence            99999986655554432                     3444566665443 47999999999999999987543   56


Q ss_pred             EEcccCccC--eEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226          230 ETIQAHSEP--INALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG  305 (434)
Q Consensus       230 ~~~~~~~~~--v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  305 (434)
                      ...+.|...  |..+.+.+.|  .|++|+.||.|++||++.............. ...+..+++..+++...+++|+. +
T Consensus      1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~-~yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW-EYGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred             eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc-ccCccceeeeeccCCCeeeecCc-c
Confidence            777888877  9999999888  7999999999999999943222111111111 11235899999999999999998 9


Q ss_pred             eEEEEEcCccccccc-cc-CcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCC
Q 046226          306 YIHYWHKGWFSAQLQ-YG-GALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~-~~-~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~  359 (434)
                      .|+||++........ +. ..+....+.+.|++|++.  ++++|+.|.+|.||.....
T Consensus      1326 ~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            999999864432211 11 112223456799999876  7889999999999987764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=8.4e-17  Score=135.39  Aligned_cols=254  Identities=13%  Similarity=0.091  Sum_probs=178.5

Q ss_pred             eccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc---eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226          127 RLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV---KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA  201 (434)
Q Consensus       127 ~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  201 (434)
                      .+.+|.+.|+++.|+.+  .|++|+.|..+++|.+...-..   +.+.+..                  ..|...|.|++
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~------------------~~H~SNIF~L~  112 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME------------------HPHRSNIFSLE  112 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc------------------CccccceEEEE
Confidence            45679999999999987  8899999999999997642111   1111111                  13778999999


Q ss_pred             EecCCCEEEEEecCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226          202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQA--HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  278 (434)
                      |...+..+++|..+++|.+.|+++.+.+..+..  ..+.|+.+..+|.. .|++.+.++.|.+||.+...   .......
T Consensus       113 F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~---~~~~~~~  189 (609)
T KOG4227|consen  113 FDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ---NPISLVL  189 (609)
T ss_pred             EccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC---CCCceee
Confidence            999999999999999999999999988887753  23589999999977 99999999999999998222   1222223


Q ss_pred             ecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccccccCcccCccc---ceEEEEe--eCCEEEEecCCCcEE
Q 046226          279 LTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH---AVMCLAS--VANYVISGSADSTSR  352 (434)
Q Consensus       279 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~--~~~~l~s~~~dg~i~  352 (434)
                      ..........+.|+|. -.+|++.+..+-+-+||.+...........+.+-..   .-....|  +|+.|++--....-.
T Consensus       190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~  269 (609)
T KOG4227|consen  190 PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL  269 (609)
T ss_pred             ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence            3334456788899995 457888888999999999865544322222222111   1133344  477777766666667


Q ss_pred             EEeccCCCceeeEEEeec------cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          353 VWAREQDGRHTMLAVLVG------HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       353 iwd~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      +||+.+..  ..+..+..      ....+.+++|..+          ..+++|+.+=.|+||.+...
T Consensus       270 ~~D~~S~R--~~V~k~D~N~~GY~N~~T~KS~~F~~D----------~~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  270 YFDFISQR--CFVLKSDHNPNGYCNIKTIKSMTFIDD----------YTVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             Eeeeeccc--ceeEeccCCCCcceeeeeeeeeeeecc----------eeeeccCcccceEEEecCCC
Confidence            78887641  12222221      1235667888766          34999999999999999754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=3.5e-18  Score=146.54  Aligned_cols=268  Identities=12%  Similarity=0.150  Sum_probs=205.9

Q ss_pred             EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226           95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      -+.+.+  +|..|+.|+.-|.|-.+|..++++...+... ..|.++.|-.+ .++++.....+.|||-. +..+..+   
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHCl---  206 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCL---  206 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeeh---
Confidence            456777  8999999999999999999999998888754 45888888665 67777778889999843 2222222   


Q ss_pred             eccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eE
Q 046226          172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VL  250 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l  250 (434)
                                          .....|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+ .+
T Consensus       207 --------------------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVi  266 (545)
T KOG1272|consen  207 --------------------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVI  266 (545)
T ss_pred             --------------------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceE
Confidence                                255678899999999999999999999999999999999999889999999999988 89


Q ss_pred             EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCccc
Q 046226          251 YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH  330 (434)
Q Consensus       251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  330 (434)
                      -+|...|+|.+|...      ...++..+..|.++|.+|++.++|+++++.+.|..++|||++.......+..     ..
T Consensus       267 h~GhsnGtVSlWSP~------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-----p~  335 (545)
T KOG1272|consen  267 HLGHSNGTVSLWSPN------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-----PH  335 (545)
T ss_pred             EEcCCCceEEecCCC------CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-----CC
Confidence            999999999999765      5566667788999999999999999999999999999999987664333211     23


Q ss_pred             ceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc--ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226          331 AVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH--RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       331 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                      ....++++.+-+++.+....|.||.-........-..+-.|  .++|..+.|.|-         ..+|-.|-..|.-.|
T Consensus       336 ~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~---------EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  336 PASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY---------EDVLGIGHAGGITSI  405 (545)
T ss_pred             CccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH---------HHeeeccccCCceeE
Confidence            45677888776777777778999953322111111112222  348889999886         555655555554333

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.5e-15  Score=140.46  Aligned_cols=289  Identities=15%  Similarity=0.212  Sum_probs=203.8

Q ss_pred             eccccEEEEEE--cCCEEEEEeCCCeEEEecCCC----ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCC
Q 046226           90 KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE----FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTW  161 (434)
Q Consensus        90 ~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~  161 (434)
                      .|.-.++|.++  .++++|+|..||.|.+|.-..    ......+.=|...|.+++|+++  +|++|+..|.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            46666888888  899999999999999996322    1223445568889999999998  999999999999999987


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-------
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-------  234 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------  234 (434)
                      ++. +.+                      ..-.++|..+.++||+.+.+....|+.|.+....+.....++.+       
T Consensus       283 ~~k-qfL----------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~  339 (792)
T KOG1963|consen  283 GKK-QFL----------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS  339 (792)
T ss_pred             CCc-ccc----------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence            762 111                      13677899999999999999999999999998766544333332       


Q ss_pred             ----CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec-------ccccCeEEEEEecCCCEEEEEc
Q 046226          235 ----HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT-------AKYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       235 ----~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~  302 (434)
                          ..+-.+.++++|.. .++-.+..|.|.+||+.....  ..+......       .+...++.++.+..|.++++.-
T Consensus       340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~--i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDST--IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             ccccccccceeEEEcCCCCceeecCCCceEEEEeccccce--eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence                23456778888844 888889999999999873222  222111111       1223566777777888888863


Q ss_pred             C--------C--CeEEEEEcCcccccccccC-cccCcccceEEEEee----CCEEEEecCCCcEEEEeccCC-------C
Q 046226          303 T--------D--GYIHYWHKGWFSAQLQYGG-ALQGHTHAVMCLASV----ANYVISGSADSTSRVWAREQD-------G  360 (434)
Q Consensus       303 ~--------d--g~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~-------~  360 (434)
                      .        |  -.+++|-.........+.. ....|...+.+..+.    ...+++++.||.++||-+...       .
T Consensus       418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s  497 (792)
T KOG1963|consen  418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSS  497 (792)
T ss_pred             eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCcc
Confidence            2        3  3577887655444443322 233566555444432    338999999999999988332       2


Q ss_pred             ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          361 RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       361 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      .+.|...-.-|..++++++|+.|         |. +++.+.|++|.+||..+.
T Consensus       498 ~W~c~~i~sy~k~~i~a~~fs~d---------Gs-lla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  498 NWTCKAIGSYHKTPITALCFSQD---------GS-LLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             ceEEeeeeccccCcccchhhcCC---------Cc-EEEEecCCEEEEecCCCh
Confidence            33444433347889999999988         64 666778999999999884

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=1.5e-16  Score=134.42  Aligned_cols=271  Identities=14%  Similarity=0.153  Sum_probs=188.5

Q ss_pred             CCCCCCCCCCC-ccCCCCCCCcccceeee--------------EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226           58 LSSPRHPFNPT-AAAGSSSPETSSSYRCI--------------SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        58 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~  120 (434)
                      +++.-+..+.. .+++++.|..++.|...              ..|-.|..+|+++.|  +|++||+|+++|.|.+|...
T Consensus        16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~   95 (434)
T KOG1009|consen   16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG   95 (434)
T ss_pred             eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence            33433333333 78888888888877763              446779999999999  88999999999999999654


Q ss_pred             --------C--------ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeE
Q 046226          121 --------E--------FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN  182 (434)
Q Consensus       121 --------~--------~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (434)
                              +        ......+.+|...|+.++|+++  .+++++.|..+++||+..+.......             
T Consensus        96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-------------  162 (434)
T KOG1009|consen   96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-------------  162 (434)
T ss_pred             CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-------------
Confidence                    2        3344566789999999999998  88899999999999998876655553             


Q ss_pred             EEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc----------c---------Cc----cCe
Q 046226          183 LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ----------A---------HS----EPI  239 (434)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----------~---------~~----~~v  239 (434)
                               +|...|..++|.|-++++++-+.|...+.+.+...+.+....          .         |.    ...
T Consensus       163 ---------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF  233 (434)
T KOG1009|consen  163 ---------DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF  233 (434)
T ss_pred             ---------ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence                     699999999999999999999989877777765443322211          0         11    134


Q ss_pred             EEEEEcCCC-eEEEEeC----CCe-----EEEEecccccCcceeEEEEEecccccCeEEEEEec----------------
Q 046226          240 NALVVADDG-VLYSASD----DAT-----VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL----------------  293 (434)
Q Consensus       240 ~~~~~~~~~-~l~s~~~----dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------  293 (434)
                      ..++|+|+| ++++...    .+.     .++|+.     .....+...+.....++..+.++|                
T Consensus       234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr-----k~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~  308 (434)
T KOG1009|consen  234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR-----KDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFV  308 (434)
T ss_pred             hhcccCCCCcEEEcccceeeeCCceeeceeEeecc-----ccccCceeecCCCCcceEEEEeeeeEEEeccccccccccc
Confidence            567788999 6665432    222     234432     233344444444444555555443                


Q ss_pred             --CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          294 --DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       294 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                        -+..++.++ ...|++||.+.......   .-.-|-..++.++|+  |.+|+..+.||...+-.++..
T Consensus       309 lpyrlvfaiAt-~~svyvydtq~~~P~~~---v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  309 LPYRLVFAIAT-KNSVYVYDTQTLEPLAV---VDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             cccceEEEEee-cceEEEeccccccceEE---EeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence              223455555 45799999754332222   334677899999996  569999999999888887765

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=4.2e-15  Score=124.42  Aligned_cols=232  Identities=17%  Similarity=0.215  Sum_probs=173.9

Q ss_pred             cccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCC--eEEEeecCCCCCcee
Q 046226           92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDG--KIRVWRSTWDNGVKH  167 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg--~i~vwd~~~~~~~~~  167 (434)
                      ...+..+.|  +...|..|+.|| -++|+.+..............|.-+-|+...++.++.+.  .+++.+++....+..
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe   83 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE   83 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence            345667778  667788888887 567877765554444445567888889999888777754  488888877666655


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc---CccCeEEEEE
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA---HSEPINALVV  244 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~  244 (434)
                      +.                       ...+|.++.++  .+.|+++-.+. |+|||+++.+.+.++..   +...+.++.+
T Consensus        84 ~~-----------------------fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~  137 (391)
T KOG2110|consen   84 IF-----------------------FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSP  137 (391)
T ss_pred             Ee-----------------------cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeecc
Confidence            52                       66789999986  55677776554 99999999999888764   4445777777


Q ss_pred             cCCC-eEEEE--eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCe-EEEEEcCccccccc
Q 046226          245 ADDG-VLYSA--SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGY-IHYWHKGWFSAQLQ  320 (434)
Q Consensus       245 ~~~~-~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~  320 (434)
                      ++.+ +++--  ...|.|.+||+.      ..+....+..|.+.+.+++|+++|.+||++++.|+ |++|.+..+....+
T Consensus       138 n~~n~ylAyp~s~t~GdV~l~d~~------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e  211 (391)
T KOG2110|consen  138 NNANCYLAYPGSTTSGDVVLFDTI------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE  211 (391)
T ss_pred             CCCCceEEecCCCCCceEEEEEcc------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence            7666 66543  346899999987      45566777899999999999999999999999985 68999876665555


Q ss_pred             ccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccC
Q 046226          321 YGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~  358 (434)
                      +..-.  -...|.+++|+  +.+|++.+..++|+||.++.
T Consensus       212 FRRG~--~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  212 FRRGT--YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeCCc--eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            43322  23567888886  56999999999999999875

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=3.5e-16  Score=128.37  Aligned_cols=210  Identities=13%  Similarity=0.113  Sum_probs=171.7

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC---eeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEeccccc
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS---KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYS  268 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~  268 (434)
                      -..+|+|.+|++|...++.+..+..|.||.....   +..+++..|...|++++|+|.. .|++|+.|..-++|...   
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~---   85 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP---   85 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC---
Confidence            4578999999999999999999999999988654   4788899999999999999999 99999999999999764   


Q ss_pred             CcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEec
Q 046226          269 ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGS  346 (434)
Q Consensus       269 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~  346 (434)
                      ..........+..++..++++.|+|.++.|++|+....|.||-++....-..-...-..+...|++++|..+  +|++|+
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            345666777777888999999999999999999999999999886554433323334467788999999855  899999


Q ss_pred             CCCcEEEEecc-----CCC----------ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          347 ADSTSRVWARE-----QDG----------RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       347 ~dg~i~iwd~~-----~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      .|+..|||..-     ...          -.+++.++....+.|..+.|+|.         |..|+=.+.|+.|.+=|..
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s---------G~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS---------GNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC---------CCEeeEecCCCceEEeecC
Confidence            99999999642     110          00223344455678999999999         9999999999999999987


Q ss_pred             CCC
Q 046226          412 RPK  414 (434)
Q Consensus       412 ~~~  414 (434)
                      .+.
T Consensus       237 ~p~  239 (361)
T KOG1523|consen  237 GPS  239 (361)
T ss_pred             CCc
Confidence            664

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=9.2e-15  Score=122.06  Aligned_cols=293  Identities=17%  Similarity=0.183  Sum_probs=183.4

Q ss_pred             cEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccC-CCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCcee
Q 046226           94 QILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKA-KTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        94 ~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      .+.-++|  .-..+|++..|.+|++||-.. +....++. ....|.+++|.|.   .+++|+..| |.+|..........
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r  177 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR  177 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence            4566777  344678889999999999766 44444443 4567999999996   677777655 89998653321111


Q ss_pred             -eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEcccCccCeEEEEEc
Q 046226          168 -VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIETIQAHSEPINALVVA  245 (434)
Q Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  245 (434)
                       .....  .....+  +     ...+| .+|++|+|.+||..+++++. |..|.|||..++..+.-.....+.+.-+.|+
T Consensus       178 ~~~~~s--~~~~qv--l-----~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS  247 (445)
T KOG2139|consen  178 NIRMMS--THHLQV--L-----QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS  247 (445)
T ss_pred             cccccc--ccchhh--e-----eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence             00000  000000  0     11134 78999999999999998865 5789999999988766554566788999999


Q ss_pred             CCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccccc--
Q 046226          246 DDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYG--  322 (434)
Q Consensus       246 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--  322 (434)
                      ||+ +|+++.-|+..++|+..     +......-. ...+.|...+|+|+|++|+..+. |.-++|.+..........  
T Consensus       248 Pdgd~lfaAt~davfrlw~e~-----q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~  320 (445)
T KOG2139|consen  248 PDGDVLFAATCDAVFRLWQEN-----QSWTKERWI-LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRP  320 (445)
T ss_pred             CCCCEEEEecccceeeeehhc-----ccceeccee-ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCc
Confidence            999 99999999999999644     223222222 23348999999999998776553 333455443222111110  


Q ss_pred             ---------Ccc------cC---cccceEEEEee--CCEEEEecCCC--------cEEEEeccCCCceeeEEEeeccccc
Q 046226          323 ---------GAL------QG---HTHAVMCLASV--ANYVISGSADS--------TSRVWAREQDGRHTMLAVLVGHRGP  374 (434)
Q Consensus       323 ---------~~~------~~---~~~~v~~~~~~--~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~h~~~  374 (434)
                               ..+      .+   -.+.+.+++|+  |++|++.-..+        .|.+||.+..........-......
T Consensus       321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~  400 (445)
T KOG2139|consen  321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY  400 (445)
T ss_pred             ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence                     000      01   12355677775  77888765443        4777887765322222110011112


Q ss_pred             eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      ...+.|.|..      .++.+|..+=..|.+.-|++.
T Consensus       401 P~~IsF~pl~------n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  401 PAYISFGPLK------NEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             CceEEeeecc------cCCcEEEEEeccCceEeeeeE
Confidence            4457777652      347788888888888888765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=9.1e-17  Score=140.82  Aligned_cols=169  Identities=18%  Similarity=0.269  Sum_probs=131.1

Q ss_pred             eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226          124 ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA  201 (434)
Q Consensus       124 ~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  201 (434)
                      +...+.+|++.|+++.|+.+  .|++|+.|-.+.|||.-..+....+.                     .+|...|.++.
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------------------TgHtaNIFsvK  100 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------------------TGHTANIFSVK  100 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------------------cccccceeEEe
Confidence            34568899999999999987  89999999999999987555544443                     27999999999


Q ss_pred             EecC--CCEEEEEecCCcEEEEEcCC----------CeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccc
Q 046226          202 INVS--DDTLYSASLDKTIKVWRIRD----------SKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFY  267 (434)
Q Consensus       202 ~~~~--~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~  267 (434)
                      |-|.  +..+++|..|..|+++|+..          ......+..|...|..|+..|++  .+.++++||+|+-+|++..
T Consensus       101 FvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  101 FVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             eeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            9984  67889999999999999974          23455566789999999999998  8999999999999999832


Q ss_pred             cCccee----EEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcC
Q 046226          268 SENQLH----TLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       268 ~~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~  313 (434)
                      ..-...    .....+...--...++.++|. ..+|++|+.|-..++||.+
T Consensus       181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  181 HVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             ccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            211111    111111122235678899995 5689999999999999964

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=2.5e-16  Score=133.97  Aligned_cols=193  Identities=19%  Similarity=0.198  Sum_probs=147.3

Q ss_pred             EEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226           96 LCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus        96 ~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      .+++|  +|..|++|+.||++|||+.++...+.....|.+.|.++.|+||  .|++.+.| ..+||+++++..+..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP-  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence            66777  8899999999999999999998888888899999999999998  78888888 899999988744433310 


Q ss_pred             eccCCCCceeEEEeccccccCcCCCeEEEEEecCC---CE--EEEEecCCcEEEEEcCCCee-----EEEcccCccCeEE
Q 046226          172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD---DT--LYSASLDKTIKVWRIRDSKC-----IETIQAHSEPINA  241 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~--l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~  241 (434)
                                         .+.......+.|+.|+   .+  ++....-+.|+.||+...+-     ..+.......|.+
T Consensus       226 -------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSs  286 (398)
T KOG0771|consen  226 -------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISS  286 (398)
T ss_pred             -------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCccee
Confidence                               0233345566676665   22  22333445677777643221     1111123457999


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          242 LVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       242 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      ++++++| +++.|+.||.|.|++..     ...........|..-|+.+.|+|+.+++++.+.|..+.+..+..
T Consensus       287 l~VS~dGkf~AlGT~dGsVai~~~~-----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  287 LAVSDDGKFLALGTMDGSVAIYDAK-----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEcCCCcEEEEeccCCcEEEEEec-----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999 99999999999999976     45556667778999999999999999999999999999887643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.71  E-value=3e-15  Score=143.03  Aligned_cols=273  Identities=16%  Similarity=0.233  Sum_probs=175.9

Q ss_pred             ecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCc-eeeEeeeccCCCCceeEEEeccccccC
Q 046226          117 WKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAVRNLIVGKDKMMK  192 (434)
Q Consensus       117 wd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (434)
                      |+. .|..+..+..|...|..++.+++   ++++|+.||+|++|+...-..- ...+           ..+     ++..
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r-----------S~l-----tys~ 1096 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR-----------SEL-----TYSP 1096 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee-----------eeE-----EEec
Confidence            553 57888999999999999998875   8999999999999998643221 1110           000     1112


Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-------eeEEEcccC-ccCeEEE-EEcC--CC-eEEEEeCCCeEE
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-------KCIETIQAH-SEPINAL-VVAD--DG-VLYSASDDATVR  260 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~-~~~v~~~-~~~~--~~-~l~s~~~dg~i~  260 (434)
                      ....+.++...+.++.+|+++.||.|.+.+++..       .+....+.+ .+.+.++ ++..  .. .++.+..-+.|.
T Consensus      1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred             cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence            5678899999999999999999999999998752       122222222 2333333 3322  22 788888889999


Q ss_pred             EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--
Q 046226          261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--  338 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--  338 (434)
                      .||++......    ........+.|++++.+|.+++++.|+..|.+.+||++-.........   ++..++..+..+  
T Consensus      1177 ~~D~r~~~~~w----~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~---P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1177 SWDTRMRHDAW----RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH---PARAPIRHVWLCPT 1249 (1431)
T ss_pred             EecchhhhhHH----hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC---cccCCcceEEeecc
Confidence            99998332221    222334557899999999999999999999999999986655444322   233455554443  


Q ss_pred             -C--CEEEEec--CCCcEEEEeccCCCceeeEEEeecc-ccceeE--EEE----eecccCC---CCCCcccEEEEeecCC
Q 046226          339 -A--NYVISGS--ADSTSRVWAREQDGRHTMLAVLVGH-RGPIRC--AIA----FLGRFGE---ETEDEYCTICTGSLDG  403 (434)
Q Consensus       339 -~--~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~--~~~----~~~~~~~---~~~~~~~~l~s~~~Dg  403 (434)
                       +  ...++++  ..+.|.+|++.++.   +-..+-.. ..+...  +..    .|+....   .....+.++.+|+.|+
T Consensus      1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~---~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~ 1326 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGL---RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDM 1326 (1431)
T ss_pred             CCCCceEEEecccCCCceeeeecccCc---ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcc
Confidence             3  3444443  57899999999883   22222221 100000  000    0110000   0112267899999999


Q ss_pred             eEEEEecCCCCcc
Q 046226          404 VLKMWRVTRPKSS  416 (434)
Q Consensus       404 ~v~iw~~~~~~~~  416 (434)
                      .|+.||...++..
T Consensus      1327 kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1327 KIRKWDPTRPEIS 1339 (1431)
T ss_pred             ceeeccCCCcccc
Confidence            9999999887654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=6.4e-14  Score=126.02  Aligned_cols=250  Identities=13%  Similarity=0.163  Sum_probs=154.0

Q ss_pred             eeEEEeeccccEEEEEE--cCCEEEEEe-CCCeEEEecCC-Ccee--EeeccCCCccEEEEEEeCC--EEEEEEc-CCeE
Q 046226           84 CISSVLKKDGQILCIAV--GNGFIYTGS-DSNVIRIWKQP-EFTE--CGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKI  154 (434)
Q Consensus        84 ~~~~~~~h~~~v~~~~~--~~~~l~tg~-~dg~i~iwd~~-~~~~--~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i  154 (434)
                      ++.++. +.+....+++  ++++|++++ .++.|.+|++. +++.  +.... .......++++|+  .+++++. ++.|
T Consensus        27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v  104 (330)
T PRK11028         27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCV  104 (330)
T ss_pred             eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeE
Confidence            344443 3355667777  788887764 57899999986 3332  23222 2334678999987  5666654 8999


Q ss_pred             EEeecCCCCCcee-eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCCeeEE--
Q 046226          155 RVWRSTWDNGVKH-VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDSKCIE--  230 (434)
Q Consensus       155 ~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~--  230 (434)
                      .+|+++....... ...                    ..+.....+++++|+++++++++ .++.|.+||+.+...+.  
T Consensus       105 ~v~~~~~~g~~~~~~~~--------------------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028        105 SVSPLDKDGIPVAPIQI--------------------IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EEEEECCCCCCCCceee--------------------ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            9999864322211 100                    01223467788999999887654 56899999997633221  


Q ss_pred             -----EcccCccCeEEEEEcCCC-eEEEEeC-CCeEEEEecccccCcceeEEEEEecc------cccCeEEEEEecCCCE
Q 046226          231 -----TIQAHSEPINALVVADDG-VLYSASD-DATVRVWRRYFYSENQLHTLILTLTA------KYSPVKTLTLTLDDGL  297 (434)
Q Consensus       231 -----~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~  297 (434)
                           ... .......+.|+|++ +++++.. ++.|.+||+.....  ..........      .......+.++|++++
T Consensus       165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             CCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence                 111 23346789999999 6666655 89999999872111  1122222211      1122346889999999


Q ss_pred             EEEEcC-CCeEEEEEcCcccccccccCcccCc-ccceEEEEeeCCEEEEecC-CCcEEEEeccC
Q 046226          298 LYGGCT-DGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASVANYVISGSA-DSTSRVWAREQ  358 (434)
Q Consensus       298 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~  358 (434)
                      ++++.. ++.|.+|++................ ...-..+..+|++|+++.. +++|.+|+++.
T Consensus       242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            999864 7899999986543333222221111 1112344456888777665 89999998863

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.70  E-value=8.3e-15  Score=128.37  Aligned_cols=168  Identities=14%  Similarity=0.154  Sum_probs=122.7

Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEE
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWR  222 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd  222 (434)
                      .++++-.-|.|.+.|....+..+.+...                  ..-....|+|+.|-|.+ ..++++-.+|.+++||
T Consensus       187 dllIGf~tGqvq~idp~~~~~sklfne~------------------r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~  248 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINFEVSKLFNEE------------------RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYD  248 (636)
T ss_pred             ceEEeeccCceEEecchhhHHHHhhhhc------------------ccccccceEEEEEEeCCCceEEEEEecCceEEee
Confidence            6888888899998886542221111100                  00144789999999854 5677778899999997


Q ss_pred             cCC--------------Ce--------------eEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCccee
Q 046226          223 IRD--------------SK--------------CIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLH  273 (434)
Q Consensus       223 ~~~--------------~~--------------~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~  273 (434)
                      .+-              +.              ++..+....+.|+.++|+||| +|++.+.||.+||||..      ..
T Consensus       249 ~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd------t~  322 (636)
T KOG2394|consen  249 KEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD------TQ  322 (636)
T ss_pred             ccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeecc------HH
Confidence            631              00              111222234578899999999 99999999999999987      33


Q ss_pred             EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226          274 TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA  339 (434)
Q Consensus       274 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  339 (434)
                      .+...+..-.+...|++|+|||++|++|++|.-|.||.+..    .+....-++|..+|..++|++
T Consensus       323 eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e----rRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  323 ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE----RRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc----ceEEEeccccccceeeEeecc
Confidence            34444455567899999999999999999999999999753    333445679999999999997

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=2.9e-15  Score=126.26  Aligned_cols=260  Identities=13%  Similarity=0.157  Sum_probs=186.3

Q ss_pred             ccccEEEEEE--c--CCEEEEEeCCCeEEEecCCCceeEee------ccCCCccEEEEEEeCCEEEEEEcCCeEEEeecC
Q 046226           91 KDGQILCIAV--G--NGFIYTGSDSNVIRIWKQPEFTECGR------LKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRST  160 (434)
Q Consensus        91 h~~~v~~~~~--~--~~~l~tg~~dg~i~iwd~~~~~~~~~------~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~  160 (434)
                      -...|..++|  +  .+.|...+.|..+..+.+........      .....+.|..++...+.|++|-.+|.+.+|...
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence            4567888888  2  34555555777777777766554433      344577888999888899999999999999987


Q ss_pred             CCCCc--eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC-EEEEEecC--CcEEEEEcCCCeeEEEcccC
Q 046226          161 WDNGV--KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD-TLYSASLD--KTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       161 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d--g~i~vwd~~~~~~~~~~~~~  235 (434)
                      .+..-  ....+                     .....+..|.-++... .+++|+..  ..+.+||++..+.+..-+.-
T Consensus       134 ~~d~hss~l~~l---------------------a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  134 SGDLHSSKLIKL---------------------ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             CCccccccceee---------------------ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            54321  11111                     1223445555555444 45568888  88999999988666554432


Q ss_pred             c---------cCeEEEEEcCC--C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC
Q 046226          236 S---------EPINALVVADD--G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT  303 (434)
Q Consensus       236 ~---------~~v~~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  303 (434)
                      .         -.++++.|-+.  . .|++++.-+.+++||.+     ....++..+.-.+.+++++...|+++++++|..
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~-----~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~  267 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR-----HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT  267 (412)
T ss_pred             CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCc-----ccCcceeEeccccCcceeeeecCCCcEEEEecc
Confidence            1         24677888877  4 99999999999999987     455666777777889999999999999999999


Q ss_pred             CCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226          304 DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       304 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  381 (434)
                      -|.+..||++......   ..+.+-.+.|.++..++.  ++++++-|..|||+|+.+.   +++.... -...++++.+.
T Consensus       268 ~g~l~~FD~r~~kl~g---~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr---kll~kvY-vKs~lt~il~~  340 (412)
T KOG3881|consen  268 KGQLAKFDLRGGKLLG---CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR---KLLHKVY-VKSRLTFILLR  340 (412)
T ss_pred             cchhheecccCceeec---cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc---hhhhhhh-hhccccEEEec
Confidence            9999999997554333   246677888999988866  9999999999999999985   3332211 12345566665


Q ss_pred             ec
Q 046226          382 LG  383 (434)
Q Consensus       382 ~~  383 (434)
                      ++
T Consensus       341 ~~  342 (412)
T KOG3881|consen  341 DD  342 (412)
T ss_pred             CC
Confidence            44

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=4e-15  Score=137.96  Aligned_cols=234  Identities=12%  Similarity=0.043  Sum_probs=155.0

Q ss_pred             CCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcC---CeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226          111 SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD---GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV  185 (434)
Q Consensus       111 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
                      +..|.+||..... ...+..|...+....|+|+  .|+.++.+   ..|++||+.+++.....                 
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------  244 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------  244 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------
Confidence            4689999986544 4556778888999999998  67666543   47999998765322111                 


Q ss_pred             ccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEE--EEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCCeEE
Q 046226          186 GKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKV--WRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDATVR  260 (434)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~i~  260 (434)
                            ...+....++|+|||+.|+.+. .+|.+.|  ||+.+++ ...+..+...+....|+||+ .|+ ++..++...
T Consensus       245 ------~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~  317 (429)
T PRK01742        245 ------SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQ  317 (429)
T ss_pred             ------cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCce
Confidence                  0112234689999999888764 5776554  5666655 34555566778899999999 555 444678889


Q ss_pred             EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC
Q 046226          261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN  340 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  340 (434)
                      +|++......  ....    .+..  ....|+|+|++|+..+.++ +.+||+........ ...   +...-..++++|+
T Consensus       318 I~~~~~~~~~--~~~l----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~~---~~~~~~~~sPdG~  384 (429)
T PRK01742        318 VYRMSASGGG--ASLV----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SST---FLDESPSISPNGI  384 (429)
T ss_pred             EEEEECCCCC--eEEe----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cCC---CCCCCceECCCCC
Confidence            9987622211  1111    2222  4578999999998887765 55689865433211 111   1112234566788


Q ss_pred             EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          341 YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      +|+.++.++.+.+|++.... ......+.+|.+.+...+|+|-
T Consensus       385 ~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        385 MIIYSSTQGLGKVLQLVSAD-GRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEEEEcCCCceEEEEEECC-CCceEEccCCCCCCCCcccCCC
Confidence            99999999988888864311 1567777788888899999874

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=3.1e-14  Score=125.83  Aligned_cols=283  Identities=12%  Similarity=0.096  Sum_probs=195.4

Q ss_pred             eccccEEEEEE--cCCE-EEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCC
Q 046226           90 KKDGQILCIAV--GNGF-IYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNG  164 (434)
Q Consensus        90 ~h~~~v~~~~~--~~~~-l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~  164 (434)
                      .|...-+.|..  ||+| +|||..--.|++||+.+..+...-......|.-.-.+.|  .++.-..|..|.+..--.  .
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~  126 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R  126 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence            46677777777  7876 566777889999999876655443333344444444545  455556677776653210  0


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEE
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVV  244 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  244 (434)
                      -...                       .-...-.+++++.-..-|+.++....|+-++++.|..+..+....+.++++.+
T Consensus       127 hy~~-----------------------RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i  183 (703)
T KOG2321|consen  127 HYRT-----------------------RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI  183 (703)
T ss_pred             eeee-----------------------ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeee
Confidence            0000                       12233456666654444555555678999999999999999988899999999


Q ss_pred             cCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc-----CeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226          245 ADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS-----PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       245 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  318 (434)
                      ++.. +|++|+.+|.|-.||.+................+.+     .|+++.|+.+|-.+++|+.+|.|.|||++...+.
T Consensus       184 n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  184 NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             cCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence            9877 899999999999999883332222222223223333     4999999999999999999999999999876554


Q ss_pred             ccccCcccCcccceEEEEee----CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          319 LQYGGALQGHTHAVMCLASV----ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       319 ~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                      ...   -.+..-+|..+.|.    ++.+++. +...++|||-.++   +....+.. ...+..+++.|+         +.
T Consensus       264 ~~k---dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G---k~~asiEp-t~~lND~C~~p~---------sG  326 (703)
T KOG2321|consen  264 LVK---DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG---KPMASIEP-TSDLNDFCFVPG---------SG  326 (703)
T ss_pred             eec---ccCCccceeeecccccCCCceEEec-chHHhhhcccccC---Cceeeccc-cCCcCceeeecC---------Cc
Confidence            432   22344577888884    2355554 4678999999998   45555444 344899999999         88


Q ss_pred             EEEEeecCCeEEEEecCCCC
Q 046226          395 TICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      +++++-.++.+..|=+..-.
T Consensus       327 m~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             eEEEecCCCcceeEEccccC
Confidence            99999999888887766543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.2e-15  Score=132.10  Aligned_cols=277  Identities=14%  Similarity=0.162  Sum_probs=194.4

Q ss_pred             eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (434)
                      .....+..|.+.|..|.|+..  .|++++.|..|.+||.........+.                     .+|...|...
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~---------------------SGH~~NvfQa  191 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE---------------------SGHCNNVFQA  191 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc---------------------cccccchhhh
Confidence            344567789999999999874  89999999999999987765544442                     2699899888


Q ss_pred             EEecC--CCEEEEEecCCcEEEEEcCC-Cee--EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCccee
Q 046226          201 AINVS--DDTLYSASLDKTIKVWRIRD-SKC--IETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLH  273 (434)
Q Consensus       201 ~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~  273 (434)
                      .|.|.  ...+++++.||.+++=.+.. +.+  ...+..|.++|..++.-|+.  .|.+++.|+.+.-+|++..  ....
T Consensus       192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~--~pa~  269 (559)
T KOG1334|consen  192 KFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD--VPAE  269 (559)
T ss_pred             hccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC--Cccc
Confidence            89884  56799999999999887643 322  34566799999999999988  8999999999999999822  2222


Q ss_pred             EEEEEeccccc---CeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccc---c-----CcccCcccceEEEEee--C
Q 046226          274 TLILTLTAKYS---PVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQY---G-----GALQGHTHAVMCLASV--A  339 (434)
Q Consensus       274 ~~~~~~~~~~~---~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~-----~~~~~~~~~v~~~~~~--~  339 (434)
                      ... ....+..   ....++..|.. ..+++|+.|..+++||.+........   .     .........|+|+.++  +
T Consensus       270 ~~~-cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~  348 (559)
T KOG1334|consen  270 KFV-CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG  348 (559)
T ss_pred             eee-eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc
Confidence            222 3333333   56788999855 48999999999999998754332110   0     1111223468999997  4


Q ss_pred             CEEEEecCCCcEEEEeccCCCc---------eeeE-EEeecccc--ceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226          340 NYVISGSADSTSRVWAREQDGR---------HTML-AVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       340 ~~l~s~~~dg~i~iwd~~~~~~---------~~~~-~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                      .-|++.-.|-.|++++-.-+..         ...+ +.++||..  .|.++-|.--+        ..++++|+.-|.|.|
T Consensus       349 sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr--------sEyVvSGSDCGhIFi  420 (559)
T KOG1334|consen  349 SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR--------SEYVVSGSDCGHIFI  420 (559)
T ss_pred             cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc--------cceEEecCccceEEE
Confidence            4455555677899995432211         0222 33788865  47777775222        789999999999999


Q ss_pred             EecCCCCccc------cccccccCceeEee
Q 046226          408 WRVTRPKSSC------GHLNKTNGHEYFEL  431 (434)
Q Consensus       408 w~~~~~~~~~------~~~~~~~g~~~~~~  431 (434)
                      |+-.+++.+.      .-++.++.|.+.++
T Consensus       421 W~K~t~eii~~MegDr~VVNCLEpHP~~Pv  450 (559)
T KOG1334|consen  421 WDKKTGEIIRFMEGDRHVVNCLEPHPHLPV  450 (559)
T ss_pred             EecchhHHHHHhhcccceEeccCCCCCCch
Confidence            9988776442      23556666666553

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.67  E-value=1.7e-15  Score=132.57  Aligned_cols=203  Identities=12%  Similarity=0.158  Sum_probs=158.4

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      .+.|+.++.||.+.|.+ ..++....+..|.+.|.+-.|+++  .|++++.||.|++|.-...  .+.            
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRS------------  139 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRS------------  139 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHH------------
Confidence            45788889999999987 567777788999999999999998  8999999999999974311  111            


Q ss_pred             eeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCe
Q 046226          180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDAT  258 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~  258 (434)
                               .+.....+|.|++|.|+.+.++-+. .+.+.|=-+.....+-.++.|.+-|.++.|++.. .+++|++|-.
T Consensus       140 ---------tl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k  209 (737)
T KOG1524|consen  140 ---------TVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR  209 (737)
T ss_pred             ---------HHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee
Confidence                     1114667899999999987766654 3567777777777778899999999999999988 9999999999


Q ss_pred             EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee
Q 046226          259 VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV  338 (434)
Q Consensus       259 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  338 (434)
                      .++||-.       .........|+.+|++++|.|+ ..++.++.. ++++               -....+.|..++|+
T Consensus       210 fKvWD~~-------G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~---------------~~p~~GSifnlsWS  265 (737)
T KOG1524|consen  210 FKIWDAQ-------GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF---------------SSPRVGSIFNLSWS  265 (737)
T ss_pred             EEeeccc-------CcccccCChhccceeeeeeccc-cceeeeeee-eeee---------------cCCCccceEEEEEc
Confidence            9999954       4556667788999999999999 666655532 2331               11345678888885


Q ss_pred             --CCEEEEecCCCcEEE
Q 046226          339 --ANYVISGSADSTSRV  353 (434)
Q Consensus       339 --~~~l~s~~~dg~i~i  353 (434)
                        |..++.|+..|.+.+
T Consensus       266 ~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  266 ADGTQATCGTSTGQLIV  282 (737)
T ss_pred             CCCceeeccccCceEEE
Confidence              778988888887655

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=6.2e-15  Score=129.14  Aligned_cols=185  Identities=13%  Similarity=0.162  Sum_probs=131.3

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeecc----CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeecc
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLK----AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIP  174 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~  174 (434)
                      +--|+.|-.-|.|.+.|....+....+.    -....|+|+.|-|.   .++++-.+|.+.+||............... 
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~-  263 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL-  263 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc-
Confidence            3346667777788877765422111111    13468999999885   777778899999998632211111110000 


Q ss_pred             CCCCceeEEE-------eccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC
Q 046226          175 KTGGAVRNLI-------VGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD  247 (434)
Q Consensus       175 ~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  247 (434)
                      ..+.......       .+...+.--.+.|+..+|+|||++||+.+.||.++|+|..+.+.+..++.--+...|++|+||
T Consensus       264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD  343 (636)
T KOG2394|consen  264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD  343 (636)
T ss_pred             CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence            1111111000       001112224558999999999999999999999999999999888888877889999999999


Q ss_pred             C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec
Q 046226          248 G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL  293 (434)
Q Consensus       248 ~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  293 (434)
                      | +|++|++|.-|.||.+.      ..+.+..-.+|...|..++|+|
T Consensus       344 GKyIvtGGEDDLVtVwSf~------erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  344 GKYIVTGGEDDLVTVWSFE------ERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccEEEecCCcceEEEEEec------cceEEEeccccccceeeEeecc
Confidence            9 99999999999999887      6778888899999999999997

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.63  E-value=4.7e-14  Score=117.12  Aligned_cols=263  Identities=15%  Similarity=0.185  Sum_probs=170.9

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce-----eEeeccCCC------------ccEEEEEEeCC----EEEE
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT-----ECGRLKAKT------------SMVVAMEVSHD----RVYA  147 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~l~~~~~----~l~~  147 (434)
                      ..+-|.++.|  .|++||||..+|.|.++.-....     ....++.|.            ..|..+.|.++    .++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            4566899999  89999999999999999643321     223344443            36788888764    6788


Q ss_pred             EEcCCeEEEeecCCCCCce---------------eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226          148 AYGDGKIRVWRSTWDNGVK---------------HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA  212 (434)
Q Consensus       148 ~s~dg~i~vwd~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  212 (434)
                      .+.|.+|++|.+.......               .+++....... ..............|.--|+++.++.|+..++++
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~-~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHD-LEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccc-ceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            8899999999986543322               01111000000 0000111111223588889999999999999998


Q ss_pred             ecCCcEEEEEcCCCe-e--EEEcccC-----ccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcce----------
Q 046226          213 SLDKTIKVWRIRDSK-C--IETIQAH-----SEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQL----------  272 (434)
Q Consensus       213 ~~dg~i~vwd~~~~~-~--~~~~~~~-----~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~----------  272 (434)
                      . |=.|.+|+++--. .  +..++.+     ..-|++..|+|..  .++-.+..|+|++.|++...--..          
T Consensus       183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped  261 (433)
T KOG1354|consen  183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED  261 (433)
T ss_pred             c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence            7 7789999986432 1  2222222     3468889999977  788888999999999982111000          


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc------------cce---EEEEe
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT------------HAV---MCLAS  337 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------------~~v---~~~~~  337 (434)
                      ......+.+.-..|..+.|+.+|+++++-+. -+|++||+.....+....   +-|.            ..|   .-++|
T Consensus       262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~---~vh~~lr~kLc~lYEnD~IfdKFec~~  337 (433)
T KOG1354|consen  262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY---PVHEYLRSKLCSLYENDAIFDKFECSW  337 (433)
T ss_pred             CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE---eehHhHHHHHHHHhhccchhheeEEEE
Confidence            0111112233356888999999999997653 579999997655444322   2221            122   34567


Q ss_pred             eCC--EEEEecCCCcEEEEeccCC
Q 046226          338 VAN--YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       338 ~~~--~l~s~~~dg~i~iwd~~~~  359 (434)
                      +|+  ++++|+....+++|++..+
T Consensus       338 sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  338 SGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             cCCcceEecccccceEEEecCCCC
Confidence            666  9999999999999996654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=2.5e-12  Score=106.03  Aligned_cols=232  Identities=14%  Similarity=0.205  Sum_probs=156.6

Q ss_pred             EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCC--ccEEEEEEeCCEEEEEEc-C------CeEEEeecCCCC
Q 046226           95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT--SMVVAMEVSHDRVYAAYG-D------GKIRVWRSTWDN  163 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~~~~~l~~~s~-d------g~i~vwd~~~~~  163 (434)
                      ...++|  |...+++|.++ -.+||+.+-.++....+.+.  -.+.-+-|..++++..++ +      ..|.|||=....
T Consensus         8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            445888  66677777655 58999987755544333332  234445566665554443 2      579999944333


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC-CCeeEEEcccC--ccCeE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIR-DSKCIETIQAH--SEPIN  240 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~--~~~v~  240 (434)
                      .+..+                       ....+|.++.+.+  ..|++.- .+.|+||... ..+.++.+...  ...+.
T Consensus        87 ~i~el-----------------------~f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC  140 (346)
T KOG2111|consen   87 CIIEL-----------------------SFNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLC  140 (346)
T ss_pred             EEEEE-----------------------EeccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceE
Confidence            34333                       3678899999974  4566666 6789999987 44555555432  22344


Q ss_pred             EEEEcCCC-eEEE-EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCe-EEEEEcCcccc
Q 046226          241 ALVVADDG-VLYS-ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGY-IHYWHKGWFSA  317 (434)
Q Consensus       241 ~~~~~~~~-~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~  317 (434)
                      +++-..+. .|+. |-.-|.|.|-|+......    ....+.+|...|.+++++.+|..+|+++..|+ |+|||..+...
T Consensus       141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~  216 (346)
T KOG2111|consen  141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL  216 (346)
T ss_pred             eecCCCCceEEEcCCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE
Confidence            44333333 4444 445699999998721111    34567789999999999999999999999996 79999887666


Q ss_pred             cccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCC
Q 046226          318 QLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       318 ~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ..++..  ......|.|++|++  .+|++.++.|+++||.++..
T Consensus       217 l~E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  217 LQELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eeeeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            555432  23345789999975  49999999999999998764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.63  E-value=9.2e-13  Score=118.31  Aligned_cols=273  Identities=12%  Similarity=0.041  Sum_probs=170.4

Q ss_pred             CEE-EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          103 GFI-YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       103 ~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      +++ ++-..+|.|.|.|..+.+.+.++......-..+.+++|  ++++++.||.|.++|+.+.+.+..++          
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~----------   75 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK----------   75 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----------
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe----------
Confidence            444 45567899999999999999999876554455778886  78888999999999999988777774          


Q ss_pred             eeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCCeeEEEcccC-------ccCeEEEEEcCCC-eE
Q 046226          180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDSKCIETIQAH-------SEPINALVVADDG-VL  250 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-~l  250 (434)
                                   -......+++++||++++++. .++.+.++|.++.+.++.+...       ...+..+..++.. .+
T Consensus        76 -------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f  142 (369)
T PF02239_consen   76 -------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF  142 (369)
T ss_dssp             --------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred             -------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence                         344568899999999998775 6899999999999998887643       3456778777777 44


Q ss_pred             EE-EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCcccCc
Q 046226          251 YS-ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       251 ~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      +. .-+.+.|.+.|....     ..................|+|++++++++ ..+..|.++|............-...|
T Consensus       143 Vv~lkd~~~I~vVdy~d~-----~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~  217 (369)
T PF02239_consen  143 VVNLKDTGEIWVVDYSDP-----KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH  217 (369)
T ss_dssp             EEEETTTTEEEEEETTTS-----SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE
T ss_pred             EEEEccCCeEEEEEeccc-----cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccc
Confidence            44 445588888776521     11222222234567788999999987664 557789999987554332221111233


Q ss_pred             ccceEEE-----------EeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEE
Q 046226          329 THAVMCL-----------ASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC  397 (434)
Q Consensus       329 ~~~v~~~-----------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~  397 (434)
                      ..++..+           .-.+...++.-....+.+||....   +.++.+....++ .-+..+|+         ++++.
T Consensus       218 ~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kvv~~I~~~G~g-lFi~thP~---------s~~vw  284 (369)
T PF02239_consen  218 PGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KVVKTIPTQGGG-LFIKTHPD---------SRYVW  284 (369)
T ss_dssp             ETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SEEEEEE-SSSS---EE--TT----------SEEE
T ss_pred             ccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eEEEEEECCCCc-ceeecCCC---------CccEE
Confidence            3333332           222333322222345667777765   777777776666 67888998         88888


Q ss_pred             Ee----ecCCeEEEEecCCCCcc
Q 046226          398 TG----SLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       398 s~----~~Dg~v~iw~~~~~~~~  416 (434)
                      ..    ...+.|.++|.++.+..
T Consensus       285 vd~~~~~~~~~v~viD~~tl~~~  307 (369)
T PF02239_consen  285 VDTFLNPDADTVQVIDKKTLKVV  307 (369)
T ss_dssp             EE-TT-SSHT-EEEEECCGTEEE
T ss_pred             eeccCCCCCceEEEEECcCccee
Confidence            87    55689999999987543

...

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.63  E-value=4.7e-14  Score=117.11  Aligned_cols=330  Identities=16%  Similarity=0.161  Sum_probs=218.9

Q ss_pred             CCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeEEEe-------eccccEEEEEE--cCCEEEEEeCCCeE
Q 046226           44 PPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVL-------KKDGQILCIAV--GNGFIYTGSDSNVI  114 (434)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~--~~~~l~tg~~dg~i  114 (434)
                      .|.+.+.+.++...++....-+...-+.+.+.+.+++.|......+       .-..+++++++  +...|++|-..|++
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv   92 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV   92 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence            4556678889999999888888888899999999988887654432       12457888888  77899999999999


Q ss_pred             EEecC----CCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226          115 RIWKQ----PEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD  188 (434)
Q Consensus       115 ~iwd~----~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
                      .-+.+    +....++....|...|..+-|+..  .+++.+.|..+.---.+.+..+.......                
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~----------------  156 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET----------------  156 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec----------------
Confidence            98854    345556667789999999999754  88888888877544444444443332211                


Q ss_pred             cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc--CCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226          189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI--RDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~  265 (434)
                             ...++.+.-.  +.+.|...|.|.+..+  ..-..+.++.+|.+.+.++.|.+.. .|++|..|..+.+||+-
T Consensus       157 -------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  157 -------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG  227 (404)
T ss_pred             -------cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence                   1111112111  5556666676666554  3456788999999999999999887 99999999999999986


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc-ccc---------C------------
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL-QYG---------G------------  323 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~---------~------------  323 (434)
                           ........+.+|...|..+...+--+.+++++.||.|.+||++...... +..         +            
T Consensus       228 -----g~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~  302 (404)
T KOG1409|consen  228 -----GRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDR  302 (404)
T ss_pred             -----CCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhh
Confidence                 2334556777888999999888888899999999999999986432110 000         0            


Q ss_pred             ---cccCcc----cceEEEEeeCC--EEEEecCCCcEEEEeccCC----CceeeEEEeeccccceeEEEEeecccCCCCC
Q 046226          324 ---ALQGHT----HAVMCLASVAN--YVISGSADSTSRVWAREQD----GRHTMLAVLVGHRGPIRCAIAFLGRFGEETE  390 (434)
Q Consensus       324 ---~~~~~~----~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  390 (434)
                         -+..|.    +...|...+.+  ...+-+..-.+|+-|.-..    ....+++.+..-...|+.+.+..+       
T Consensus       303 k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqet-------  375 (404)
T KOG1409|consen  303 KQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQET-------  375 (404)
T ss_pred             hhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhh-------
Confidence               000111    11111111111  1222222333444332111    011334444333446788877766       


Q ss_pred             CcccEEEEeecCCeEEEEecCC
Q 046226          391 DEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       391 ~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                        -.+|+|+|.|..|+|||+.+
T Consensus       376 --lglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  376 --LGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             --ccceeecCCceEEEEEechh
Confidence              56899999999999999874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=6.6e-14  Score=129.86  Aligned_cols=211  Identities=14%  Similarity=0.046  Sum_probs=137.7

Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCe
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSK  227 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~  227 (434)
                      +..|.+||...... ..+                      ..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++
T Consensus       183 ~~~i~i~d~dg~~~-~~l----------------------t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~  239 (429)
T PRK01742        183 PYEVRVADYDGFNQ-FIV----------------------NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA  239 (429)
T ss_pred             eEEEEEECCCCCCc-eEe----------------------ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc
Confidence            46899999764432 222                      1477789999999999999887654   369999998875


Q ss_pred             e--EEEcccCccCeEEEEEcCCC-eEEEE-eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-
Q 046226          228 C--IETIQAHSEPINALVVADDG-VLYSA-SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-  302 (434)
Q Consensus       228 ~--~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  302 (434)
                      .  +..+.++   ...++|+||| .|+.+ ..+|.+.||.+..... .    ...+..+...+....|+|||+.|+..+ 
T Consensus       240 ~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~-~----~~~lt~~~~~~~~~~wSpDG~~i~f~s~  311 (429)
T PRK01742        240 RKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG-T----PSQLTSGAGNNTEPSWSPDGQSILFTSD  311 (429)
T ss_pred             eEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCC-C----eEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence            3  3333333   4468999999 66655 4688777765441111 1    223344556678899999999776554 


Q ss_pred             CCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          303 TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      .+|...||+++.........    .+......++.+|++|+..+.++ +.+||+.++.. ..+  ...+  ......|+|
T Consensus       312 ~~g~~~I~~~~~~~~~~~~l----~~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-~~l--t~~~--~~~~~~~sP  381 (429)
T PRK01742        312 RSGSPQVYRMSASGGGASLV----GGRGYSAQISADGKTLVMINGDN-VVKQDLTSGST-EVL--SSTF--LDESPSISP  381 (429)
T ss_pred             CCCCceEEEEECCCCCeEEe----cCCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCe-EEe--cCCC--CCCCceECC
Confidence            57888888875433222221    22221223455688888877765 55699987632 111  1122  234577888


Q ss_pred             cccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          383 GRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       383 ~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      +         |++|+.++.+|.+.+|.+.
T Consensus       382 d---------G~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        382 N---------GIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             C---------CCEEEEEEcCCCceEEEEE
Confidence            8         9999999999999988864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=1.7e-12  Score=106.88  Aligned_cols=177  Identities=16%  Similarity=0.202  Sum_probs=128.5

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCC-CCceeeEeeeccCCCCceeEEEeccccc
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKM  190 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
                      +.|.|||-...+++.++. ...+|.++.+.++++++.- .+.|.||....+ +.+..+....                  
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~------------------  134 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRS------------------  134 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeeccc------------------
Confidence            489999977777777765 4678999999999888776 567999988633 3333332111                  


Q ss_pred             cCcCCCeEEEEEecCCCEEEE-EecCCcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCCCe-EEEEecc
Q 046226          191 MKHMGPITSIAINVSDDTLYS-ASLDKTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDDAT-VRVWRRY  265 (434)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-i~iwd~~  265 (434)
                        ......+++-+.+..+|+. |-.-|.|.|-|+...+.  -..+.+|...|.|++.+-+| ++++++..|+ |||||..
T Consensus       135 --NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~  212 (346)
T KOG2111|consen  135 --NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE  212 (346)
T ss_pred             --CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence              1222333333323334443 44568999999976654  46788999999999999999 9999999998 7999977


Q ss_pred             cccCcceeEEEEEe--cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          266 FYSENQLHTLILTL--TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       266 ~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                            ....+..+  ......|.+++|+|+..+|++++..|+|+||.++...
T Consensus       213 ------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  213 ------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence                  22222222  2334679999999999999999999999999987543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.60  E-value=2.4e-15  Score=129.35  Aligned_cols=226  Identities=11%  Similarity=0.146  Sum_probs=178.8

Q ss_pred             ccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226          133 SMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY  210 (434)
Q Consensus       133 ~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  210 (434)
                      -.-+.+.+..+  .++.++..|.|..+|..+......+.                       -...|.++.|..+.++||
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-----------------------v~Etv~Dv~~LHneq~~A  186 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-----------------------VMETVRDVTFLHNEQFFA  186 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-----------------------hhhhhhhhhhhcchHHHH
Confidence            34466777766  89999999999999998877666553                       456788999988888888


Q ss_pred             EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEE
Q 046226          211 SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTL  289 (434)
Q Consensus       211 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  289 (434)
                      ++- ...++|||- .|..++.++.| ..|..+.|.|.. +|++++..|.++.-|+.      ....+..+....+.+..+
T Consensus       187 VAQ-K~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS------~GklVa~~~t~~G~~~vm  257 (545)
T KOG1272|consen  187 VAQ-KKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVS------TGKLVASIRTGAGRTDVM  257 (545)
T ss_pred             hhh-hceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeec------hhhhhHHHHccCCccchh
Confidence            876 678999995 57777877754 578899999999 88899999999999987      556666677777888899


Q ss_pred             EEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEE
Q 046226          290 TLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAV  367 (434)
Q Consensus       290 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  367 (434)
                      +-+|-...+-+|...|+|.+|.........    .+-.|.++|.+++++  |+|++|.+.|..++|||++.-   ..+.+
T Consensus       258 ~qNP~NaVih~GhsnGtVSlWSP~skePLv----KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---~ql~t  330 (545)
T KOG1272|consen  258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLV----KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---YQLHT  330 (545)
T ss_pred             hcCCccceEEEcCCCceEEecCCCCcchHH----HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---cccce
Confidence            999988899999999999999865443333    345799999999986  789999999999999999986   33333


Q ss_pred             eeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          368 LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       368 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      +.. .-+...+++|..           -++..|....|.||.
T Consensus       331 ~~t-p~~a~~ls~Sqk-----------glLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  331 YRT-PHPASNLSLSQK-----------GLLALSYGDHVQIWK  360 (545)
T ss_pred             eec-CCCccccccccc-----------cceeeecCCeeeeeh
Confidence            333 345667888855           466666677899996

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.60  E-value=1e-13  Score=130.81  Aligned_cols=275  Identities=16%  Similarity=0.174  Sum_probs=189.4

Q ss_pred             ccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCC-CccEE----EEEEeCCEEEEEEcCCeEEEeecCCCCCc
Q 046226           91 KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAK-TSMVV----AMEVSHDRVYAAYGDGKIRVWRSTWDNGV  165 (434)
Q Consensus        91 h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~----~l~~~~~~l~~~s~dg~i~vwd~~~~~~~  165 (434)
                      |-+++++..+-.++|+.|. .-.|.+||+..+..+..+... --.+.    -+..-...++++..-+.+..=+.......
T Consensus         6 ~~~~l~~~~~~~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~   84 (967)
T KOG0974|consen    6 SLGPLNLPQLVSDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIE   84 (967)
T ss_pred             ccccccchhhccceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhhh
Confidence            4456667777347777665 457999999887766544321 11111    00011124555554443433222111000


Q ss_pred             eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc-CeEEE--
Q 046226          166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE-PINAL--  242 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~--  242 (434)
                                                .-...|....+..+...++.++.++.+.+||...+..+..+..... ...++  
T Consensus        85 --------------------------~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~  138 (967)
T KOG0974|consen   85 --------------------------RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI  138 (967)
T ss_pred             --------------------------hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence                                      1222233345556778899999999999999988776666653221 11222  


Q ss_pred             -EEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc
Q 046226          243 -VVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ  320 (434)
Q Consensus       243 -~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  320 (434)
                       -.+++. ++++|+.-+.|.+|+..  .   .. ....+.+|++.|.++.++.||+++++.+.|..+++|++.+.+... 
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~--~---dn-~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-  211 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPH--E---DN-KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-  211 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEecc--c---cC-CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-
Confidence             234445 89999999999999976  1   11 111678999999999999999999999999999999997654443 


Q ss_pred             ccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecccc-ceeEEEEeecccCCCCCCcccEEEEe
Q 046226          321 YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG-PIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                        ...-+|...|+.+.+.++.+++++.|.+.++|+.+.    ..+..+.+|.+ .|+.++..++         ...++|+
T Consensus       212 --~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~----~~l~~y~~h~g~~iw~~~~~~~---------~~~~vT~  276 (967)
T KOG0974|consen  212 --CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG----TQLEVYDEHSGKGIWKIAVPIG---------VIIKVTG  276 (967)
T ss_pred             --cccccccceeEEEEeccceeEEeccceEEEEEeccc----ceehhhhhhhhcceeEEEEcCC---------ceEEEee
Confidence              355599999999999988999999999999997664    45558888865 5888999888         7789999


Q ss_pred             ecCCeEEEEecCCCC
Q 046226          400 SLDGVLKMWRVTRPK  414 (434)
Q Consensus       400 ~~Dg~v~iw~~~~~~  414 (434)
                      +.||.+++|++....
T Consensus       277 g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  277 GNDSTLKLWDLNGRG  291 (967)
T ss_pred             ccCcchhhhhhhccc
Confidence            999999999987543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=6.7e-13  Score=112.22  Aligned_cols=213  Identities=11%  Similarity=0.135  Sum_probs=159.1

Q ss_pred             eeeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCce----eEeeccCCCccEEEEEEeCC---EEEEEEcC--Ce
Q 046226           83 RCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFT----ECGRLKAKTSMVVAMEVSHD---RVYAAYGD--GK  153 (434)
Q Consensus        83 ~~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~---~l~~~s~d--g~  153 (434)
                      ..+.+.....++|..++..+..|++|-.+|.+.+|..+.+.    .+..+..+ ..+..|.-++.   .+++|+..  ..
T Consensus        96 ~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~  174 (412)
T KOG3881|consen   96 DDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE  174 (412)
T ss_pred             ccccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence            34445556678888888877788888999999999887432    22333333 34555555543   56668887  89


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC--CCEEEEEecCCcEEEEEcCCC-eeEE
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS--DDTLYSASLDKTIKVWRIRDS-KCIE  230 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~-~~~~  230 (434)
                      +.+||+...+.+...+  .+++..-.+           .-.-.++++.|.+.  ...|++++.-+.+++||.+.+ +++.
T Consensus       175 lkiwdle~~~qiw~aK--NvpnD~L~L-----------rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~  241 (412)
T KOG3881|consen  175 LKIWDLEQSKQIWSAK--NVPNDRLGL-----------RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA  241 (412)
T ss_pred             eeeeecccceeeeecc--CCCCccccc-----------eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence            9999998774443332  111111000           12234678888887  889999999999999999866 5788


Q ss_pred             EcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEE
Q 046226          231 TIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY  309 (434)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  309 (434)
                      .+.-...+++++...|++ .+++|...|.+..||++     ........+.+..+.+++|..+|...++++++-|..|+|
T Consensus       242 ~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r-----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI  316 (412)
T KOG3881|consen  242 QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR-----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI  316 (412)
T ss_pred             EeccccCcceeeeecCCCcEEEEecccchhheeccc-----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence            888788899999999999 99999999999999998     223333447788899999999999999999999999999


Q ss_pred             EEcCc
Q 046226          310 WHKGW  314 (434)
Q Consensus       310 ~d~~~  314 (434)
                      +|+.+
T Consensus       317 hD~kt  321 (412)
T KOG3881|consen  317 HDIKT  321 (412)
T ss_pred             eeccc
Confidence            99875

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2.7e-12  Score=118.83  Aligned_cols=232  Identities=11%  Similarity=0.020  Sum_probs=145.6

Q ss_pred             eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE---cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecc
Q 046226          113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY---GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK  187 (434)
Q Consensus       113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
                      .|.+||...... ..+..+...+...+|+||  .|+..+   .+..|.+|++..++.....                   
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-------------------  239 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-------------------  239 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-------------------
Confidence            788999865443 334456678999999998  555443   2457889988655322111                   


Q ss_pred             ccccCcCCCeEEEEEecCCCEEEEE-ecCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC-CCeEEEE
Q 046226          188 DKMMKHMGPITSIAINVSDDTLYSA-SLDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD-DATVRVW  262 (434)
Q Consensus       188 ~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~i~iw  262 (434)
                          ...+.+....|+|||+.|+.. +.+|  .|++||+++++... +..+...+....|+||+ .|+..+. ++...+|
T Consensus       240 ----~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy  314 (429)
T PRK03629        240 ----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVY  314 (429)
T ss_pred             ----CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence                122334468999999988855 4444  59999998877544 33344567889999999 6655554 4555666


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC---CeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD---GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA  339 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  339 (434)
                      .+..... ...    .+...........|+|+|++|+..+.+   ..|.+||+...... .+..   .+...-..++.+|
T Consensus       315 ~~d~~~g-~~~----~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---~~~~~~p~~SpDG  385 (429)
T PRK03629        315 KVNINGG-APQ----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---TFLDETPSIAPNG  385 (429)
T ss_pred             EEECCCC-CeE----EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC---CCCCCCceECCCC
Confidence            4431111 111    112223345678899999998876543   35888888654322 1111   1111223456678


Q ss_pred             CEEEEecCCCc---EEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          340 NYVISGSADST---SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       340 ~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      ++|+..+.++.   +.++++..    .....+.+|.+.+...+|+|
T Consensus       386 ~~i~~~s~~~~~~~l~~~~~~G----~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        386 TMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CEEEEEEcCCCceEEEEEECCC----CCeEECccCCCCcCCcccCC
Confidence            88888887764   67777754    34456667888888888887

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.55  E-value=3.1e-12  Score=105.88  Aligned_cols=273  Identities=15%  Similarity=0.180  Sum_probs=173.5

Q ss_pred             EEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeec
Q 046226           97 CIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATI  173 (434)
Q Consensus        97 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~  173 (434)
                      +++.+|+++|+.+.- .+.|-|.++.+..+.+.. -..|.-+.|..+   .|..+..|+.|.+|++...+....+.    
T Consensus        15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId----   88 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID----   88 (447)
T ss_pred             eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec----
Confidence            333499999999865 777888888766554433 345777888877   45556679999999998766555443    


Q ss_pred             cCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE-EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE
Q 046226          174 PKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY  251 (434)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~  251 (434)
                                        .....+.+++|+|||+.++ +...+-.|.+|.+.+.+... ++-.+..+..++|+++| +.+
T Consensus        89 ------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~a  149 (447)
T KOG4497|consen   89 ------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCA  149 (447)
T ss_pred             ------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceee
Confidence                              4667899999999996655 56668899999998876543 33344556788888888 333


Q ss_pred             EEeC------------------------------------CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC
Q 046226          252 SASD------------------------------------DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD  295 (434)
Q Consensus       252 s~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  295 (434)
                      .++.                                    +..+.+||--      ....+. .....-.+..++|+|.+
T Consensus       150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~------Leykv~-aYe~~lG~k~v~wsP~~  222 (447)
T KOG4497|consen  150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV------LEYKVY-AYERGLGLKFVEWSPCN  222 (447)
T ss_pred             eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch------hhheee-eeeeccceeEEEecccc
Confidence            3322                                    1223444321      000111 11122468889999999


Q ss_pred             CEEEEEcCCCeEEEEEcCcccccccc------------------------------------------------------
Q 046226          296 GLLYGGCTDGYIHYWHKGWFSAQLQY------------------------------------------------------  321 (434)
Q Consensus       296 ~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------------------------------------  321 (434)
                      ++|++|+.|+.+++.+--+.+.-.++                                                      
T Consensus       223 qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~p  302 (447)
T KOG4497|consen  223 QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTP  302 (447)
T ss_pred             ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcc
Confidence            99999999999998752110000000                                                      


Q ss_pred             --------cCcccCcccceEEEEee--CCEEEEecC--CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCC
Q 046226          322 --------GGALQGHTHAVMCLASV--ANYVISGSA--DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEET  389 (434)
Q Consensus       322 --------~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  389 (434)
                              ..........+--++|+  ..++++-.+  -+.+-+||+++.    .+...-....+|....|.|.      
T Consensus       303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~piraf~WdP~------  372 (447)
T KOG4497|consen  303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKHPIRAFEWDPG------  372 (447)
T ss_pred             eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhccceeEEEeCCC------
Confidence                    00001111223345565  346665543  257899999875    23333345678999999998      


Q ss_pred             CCcccEEEEeecCCeEEEEecCCCC
Q 046226          390 EDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       390 ~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                         ...|+.+.....+++|...-..
T Consensus       373 ---~prL~vctg~srLY~W~psg~~  394 (447)
T KOG4497|consen  373 ---RPRLVVCTGKSRLYFWAPSGPR  394 (447)
T ss_pred             ---CceEEEEcCCceEEEEcCCCce
Confidence               4556666666789999977543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.54  E-value=4.8e-11  Score=109.53  Aligned_cols=271  Identities=11%  Similarity=0.067  Sum_probs=170.8

Q ss_pred             EEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226           99 AVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG  178 (434)
Q Consensus        99 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (434)
                      ...++.+++++.+|.|..+|..+++.+.................+.+++++.++.+..+|..+++.......        
T Consensus        62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--------  133 (377)
T TIGR03300        62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKL--------  133 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc--------
Confidence            346888999999999999999999988776654433334455567889999999999999988776655431        


Q ss_pred             ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCe-----EEEEEcCCCeEEEE
Q 046226          179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI-----NALVVADDGVLYSA  253 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~l~s~  253 (434)
                                     ...+.+.-.. .+..++.++.+|.|+.||.++|+.+..+......+     .+.... ++.++.+
T Consensus       134 ---------------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~  196 (377)
T TIGR03300       134 ---------------SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVG  196 (377)
T ss_pred             ---------------CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEE
Confidence                           1111111111 24567777889999999999999888776433221     111222 3577788


Q ss_pred             eCCCeEEEEecccccCcceeEEEEEec-ccc--cCeEEEEEec--CCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226          254 SDDATVRVWRRYFYSENQLHTLILTLT-AKY--SPVKTLTLTL--DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       254 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~--~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      ..++.+..+|+..  +........... +..  .....+.-+|  .+..+++++.+|.++.||..+.+......  ..  
T Consensus       197 ~~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~--  270 (377)
T TIGR03300       197 FAGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--AS--  270 (377)
T ss_pred             CCCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--cC--
Confidence            8889999998762  222221111000 000  0000010011  35678888889999999987655443321  11  


Q ss_pred             ccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecccc-ceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226          329 THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG-PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       329 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                        ........++.++.++.||.++.+|..++   +.+.....-.. ........           +..|++++.||.|++
T Consensus       271 --~~~~p~~~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i~-----------g~~l~~~~~~G~l~~  334 (377)
T TIGR03300       271 --SYQGPAVDDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAVV-----------GGYLVVGDFEGYLHW  334 (377)
T ss_pred             --CccCceEeCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEEE-----------CCEEEEEeCCCEEEE
Confidence              12334456888888899999999999887   33333211111 11222222           568899999999999


Q ss_pred             EecCCCCcc
Q 046226          408 WRVTRPKSS  416 (434)
Q Consensus       408 w~~~~~~~~  416 (434)
                      +|..+++.+
T Consensus       335 ~d~~tG~~~  343 (377)
T TIGR03300       335 LSREDGSFV  343 (377)
T ss_pred             EECCCCCEE
Confidence            999888765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=8.1e-12  Score=116.25  Aligned_cols=231  Identities=12%  Similarity=0.025  Sum_probs=141.4

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG  186 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
                      ..|.+||... .....+..+...+.+.+|+|+  .|+.++.   +..|.+||+..+......                  
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~------------------  244 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA------------------  244 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec------------------
Confidence            3689999854 444556667778999999998  6666653   346999998765432111                  


Q ss_pred             cccccCcCCCeEEEEEecCCCEEE-EEecCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCCe--E
Q 046226          187 KDKMMKHMGPITSIAINVSDDTLY-SASLDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDAT--V  259 (434)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg~--i  259 (434)
                           ...+...+..|+|||+.|+ +.+.+|  .|++||+.+++. ..+..+.......+|+||+ .|+.++ .+|.  |
T Consensus       245 -----~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~i  318 (433)
T PRK04922        245 -----SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQI  318 (433)
T ss_pred             -----cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceE
Confidence                 1333445789999999776 445555  599999988774 4455555556788999999 566554 4555  5


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC---eEEEEEcCcccccccccCcccCcccceEEEE
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG---YIHYWHKGWFSAQLQYGGALQGHTHAVMCLA  336 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  336 (434)
                      .++|+.  .. .... + ..  ........+|+|+|++|+..+.++   .|.+||+...... .+.   .+....-..++
T Consensus       319 y~~dl~--~g-~~~~-l-t~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt---~~~~~~~p~~s  387 (433)
T PRK04922        319 YRVAAS--GG-SAER-L-TF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT---PGSLDESPSFA  387 (433)
T ss_pred             EEEECC--CC-CeEE-e-ec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC---CCCCCCCceEC
Confidence            555543  11 1111 1 11  223344689999999988765433   6999998654332 111   11111112455


Q ss_pred             eeCCEEEEecCC---CcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          337 SVANYVISGSAD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       337 ~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      .+|++++..+.+   +.|.++++...    ....+..+.+.+...+|+|
T Consensus       388 pdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        388 PNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCCCccCC
Confidence            567776665543   35777777543    3344445556667777765

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.2e-11  Score=103.75  Aligned_cols=264  Identities=16%  Similarity=0.207  Sum_probs=161.2

Q ss_pred             CCccCCCCCCCcccceee----eEEEee-ccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc----e----------e
Q 046226           67 PTAAAGSSSPETSSSYRC----ISSVLK-KDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF----T----------E  124 (434)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~----~~~~~~-h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~----~----------~  124 (434)
                      ...++.+..|..++.++.    ...++. -...|+|++|   .+..|+.|+.. -|.||.....    .          .
T Consensus       110 ~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~q  188 (445)
T KOG2139|consen  110 IIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQ  188 (445)
T ss_pred             hhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchh
Confidence            344455555555554443    222332 2456999999   67788888864 5889975421    1          1


Q ss_pred             EeeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226          125 CGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA  201 (434)
Q Consensus       125 ~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  201 (434)
                      +....+| .+|++++|++|  .+++++. |..|.|||.+++..+....                      ...+.+.-+.
T Consensus       189 vl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~----------------------~glgg~slLk  245 (445)
T KOG2139|consen  189 VLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP----------------------KGLGGFSLLK  245 (445)
T ss_pred             heeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc----------------------cCCCceeeEE
Confidence            1122344 68999999998  6676665 7899999998876654431                      2556788899


Q ss_pred             EecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcce-------
Q 046226          202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQL-------  272 (434)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~-------  272 (434)
                      |+||+.+|+++.-|+..++|+.....-........+.|...+|+|+|  +|++++..-  ++|.+........       
T Consensus       246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~  323 (445)
T KOG2139|consen  246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSI  323 (445)
T ss_pred             EcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccc
Confidence            99999999999999999999654332222233344589999999999  566655444  4454432221111       


Q ss_pred             --eEEEEEec-----c----cccCeEEEEEecCCCEEEEEcCCC--------eEEEEEcCcccccccc--cCcccCcccc
Q 046226          273 --HTLILTLT-----A----KYSPVKTLTLTLDDGLLYGGCTDG--------YIHYWHKGWFSAQLQY--GGALQGHTHA  331 (434)
Q Consensus       273 --~~~~~~~~-----~----~~~~v~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~--~~~~~~~~~~  331 (434)
                        ..++..+.     .    -.+++.+++|+|.|.+|++.-..+        .|.+||.+..- ..++  .....+....
T Consensus       324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp-~vels~cg~i~ge~P~  402 (445)
T KOG2139|consen  324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP-PVELSYCGMIGGEYPA  402 (445)
T ss_pred             eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC-ceEEEecccccCCCCc
Confidence              11111111     1    135788999999999999876543        36667754221 1111  1222222223


Q ss_pred             eEEEEee---CCEEEEecCCCcEEEEecc
Q 046226          332 VMCLASV---ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       332 v~~~~~~---~~~l~s~~~dg~i~iwd~~  357 (434)
                      ..++.+.   +.+|..+-..|.+.-|++.
T Consensus       403 ~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  403 YISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             eEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            3344432   4466666677777777654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=8.9e-10  Score=99.30  Aligned_cols=276  Identities=14%  Similarity=0.139  Sum_probs=169.5

Q ss_pred             EEEEeCC----CeEEEecC--CCceeE--eeccCCCccEEEEEEeCC--EEEEEEc----CCeEEEeecCCC-CCceeeE
Q 046226          105 IYTGSDS----NVIRIWKQ--PEFTEC--GRLKAKTSMVVAMEVSHD--RVYAAYG----DGKIRVWRSTWD-NGVKHVK  169 (434)
Q Consensus       105 l~tg~~d----g~i~iwd~--~~~~~~--~~~~~~~~~v~~l~~~~~--~l~~~s~----dg~i~vwd~~~~-~~~~~~~  169 (434)
                      +++|+.+    +.|.+|++  .+++..  ..+. .......++++++  .|+++..    ++.|..|++... ..+..+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            5566666    68998887  444432  2222 2334566788776  7777766    578999988765 2222221


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCC-CeeEEE---cc----------c
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRD-SKCIET---IQ----------A  234 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~---~~----------~  234 (434)
                      ...                   ........++++|++++|+++. .+|.|.++++.. +.....   +.          .
T Consensus        81 ~~~-------------------~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq  141 (345)
T PF10282_consen   81 SVP-------------------SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQ  141 (345)
T ss_dssp             EEE-------------------ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTT
T ss_pred             eec-------------------cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccc
Confidence            110                   1334456789999999999886 489999999986 433222   11          1


Q ss_pred             CccCeEEEEEcCCC-eEEEE-eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEE
Q 046226          235 HSEPINALVVADDG-VLYSA-SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWH  311 (434)
Q Consensus       235 ~~~~v~~~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d  311 (434)
                      ......++.++|++ ++++. -....|.+|++...... ...............+.+.|+|+++++++..+ ++.|.+|+
T Consensus       142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence            23457899999998 44444 34568999998732221 22212222344567899999999998876654 78899999


Q ss_pred             cCcccccccccC---cc----cCcccceEEE--EeeCCEEEEec-CCCcEEEEecc-CCCceeeEEEeeccccceeEEEE
Q 046226          312 KGWFSAQLQYGG---AL----QGHTHAVMCL--ASVANYVISGS-ADSTSRVWARE-QDGRHTMLAVLVGHRGPIRCAIA  380 (434)
Q Consensus       312 ~~~~~~~~~~~~---~~----~~~~~~v~~~--~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~  380 (434)
                      +...........   .+    .+. .....+  +.+|++|+++. .++.|.+|++. ..+....+..+.......+.+++
T Consensus       221 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~  299 (345)
T PF10282_consen  221 YDPSDGSLTEIQTISTLPEGFTGE-NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF  299 (345)
T ss_dssp             EETTTTEEEEEEEEESCETTSCSS-SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred             ecccCCceeEEEEeeecccccccc-CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence            873222222111   11    111 123344  44577766554 56789999994 33455666666554555789999


Q ss_pred             eecccCCCCCCcccEEEEee-cCCeEEEEecC
Q 046226          381 FLGRFGEETEDEYCTICTGS-LDGVLKMWRVT  411 (434)
Q Consensus       381 ~~~~~~~~~~~~~~~l~s~~-~Dg~v~iw~~~  411 (434)
                      +|+         |++|+++. .++.|.+|+++
T Consensus       300 s~~---------g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  300 SPD---------GRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             -TT---------SSEEEEEETTTTEEEEEEEE
T ss_pred             eCC---------CCEEEEEecCCCeEEEEEEe
Confidence            999         88887776 66799999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.50  E-value=3.1e-11  Score=100.07  Aligned_cols=316  Identities=12%  Similarity=0.048  Sum_probs=184.7

Q ss_pred             CCCCCCCCCccCCCCCCCcccceeeeEEEeec-----cccEEEEEE--cCCE-EEEEeCCCeEEEecCCCceeEeeccCC
Q 046226           60 SPRHPFNPTAAAGSSSPETSSSYRCISSVLKK-----DGQILCIAV--GNGF-IYTGSDSNVIRIWKQPEFTECGRLKAK  131 (434)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~--~~~~-l~tg~~dg~i~iwd~~~~~~~~~~~~~  131 (434)
                      ...++++++.+++.+.-..+  -+-..+++-|     -+.|.-+.|  +..+ |.....|+.|.+|++...+-...+...
T Consensus        13 ~c~fSp~g~yiAs~~~yrlv--iRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLV--IRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEE--EeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            34567778888777643211  0011112212     245666777  4444 445577889999999988888888888


Q ss_pred             CccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceee------EeeeccCCCCceeEEEeccc--------------
Q 046226          132 TSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHV------KLATIPKTGGAVRNLIVGKD--------------  188 (434)
Q Consensus       132 ~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--------------  188 (434)
                      ...+..+.|+|+   .|.+...|-.|.||.+.+......-      +...+...+...........              
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            999999999998   4666777999999998765432211      11111111111100000000              


Q ss_pred             --cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226          189 --KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       189 --~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~  265 (434)
                        .+.-..-..+.+.|+|||+.|+         +||---.-.+..+ ...-.+..+.|+|.+ +|+.|+.|+.+|+.+--
T Consensus       171 l~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhcee
Confidence              0111222344555555554443         3442111111111 123468889999977 99999999999876420


Q ss_pred             cc---------------------------------------c--------Cc-------ceeEEE------EEecccccC
Q 046226          266 FY---------------------------------------S--------EN-------QLHTLI------LTLTAKYSP  285 (434)
Q Consensus       266 ~~---------------------------------------~--------~~-------~~~~~~------~~~~~~~~~  285 (434)
                      ..                                       .        ..       ......      .........
T Consensus       241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g  320 (447)
T KOG4497|consen  241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG  320 (447)
T ss_pred             eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence            00                                       0        00       000000      111122345


Q ss_pred             eEEEEEecCCCEEEEEcC--CCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCc
Q 046226          286 VKTLTLTLDDGLLYGGCT--DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGR  361 (434)
Q Consensus       286 v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~  361 (434)
                      +.-++|++|..++++-..  -..+-+||++..+.-..+     -...+|.++.|++.  .|+.+.....+++|.....  
T Consensus       321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-----iQk~piraf~WdP~~prL~vctg~srLY~W~psg~--  393 (447)
T KOG4497|consen  321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP--  393 (447)
T ss_pred             cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-----hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc--
Confidence            778999999998887643  457999998643322222     23457899999855  6666666778999987653  


Q ss_pred             eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeE
Q 046226          362 HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVL  405 (434)
Q Consensus       362 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v  405 (434)
                       ..+.. ....-.|..+.|..+         |..|+-.+.|-..
T Consensus       394 -~~V~v-P~~GF~i~~l~W~~~---------g~~i~l~~kDafc  426 (447)
T KOG4497|consen  394 -RVVGV-PKKGFNIQKLQWLQP---------GEFIVLCGKDAFC  426 (447)
T ss_pred             -eEEec-CCCCceeeeEEecCC---------CcEEEEEcCCceE
Confidence             33332 233357889999988         8889999988653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=8e-12  Score=115.89  Aligned_cols=234  Identities=12%  Similarity=0.025  Sum_probs=140.4

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG  186 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
                      ..|.++|.. +.....+..+...+.+.+|+|+  .|+..+.   ...|.+||+.+++.....                  
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------------------  236 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------------------  236 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee------------------
Confidence            367777863 4444455567788999999998  5666554   246999998766432211                  


Q ss_pred             cccccCcCCCeEEEEEecCCCEEE-EEecCCcEEEE--EcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCCeEEE
Q 046226          187 KDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVW--RIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDATVRV  261 (434)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg~i~i  261 (434)
                           ...+.+...+|+|||+.|+ +.+.+|...+|  |+..+. ...+..+........|+||| .|+..+ .+|...+
T Consensus       237 -----~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~I  310 (427)
T PRK02889        237 -----NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQI  310 (427)
T ss_pred             -----cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEE
Confidence                 1334456789999999886 45667765555  454444 45555555566778999999 555444 4567777


Q ss_pred             EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC---eEEEEEcCcccccccccCcccCcccceEEEEee
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG---YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV  338 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  338 (434)
                      |.+..... .. ..+ ...  ........|+|+|++|+..+.++   .|.+||+........ .   ......-..++.+
T Consensus       311 y~~~~~~g-~~-~~l-t~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t---~~~~~~~p~~spd  381 (427)
T PRK02889        311 YRMPASGG-AA-QRV-TFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-T---DTTRDESPSFAPN  381 (427)
T ss_pred             EEEECCCC-ce-EEE-ecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-c---CCCCccCceECCC
Confidence            76642111 11 111 111  22334678999999998776554   699999875432211 1   1111222345556


Q ss_pred             CCEEEEecCCC---cEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          339 ANYVISGSADS---TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       339 ~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      |++|+..+.++   .+.+.++. +   .....+..+.+.+...+|+|-
T Consensus       382 g~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        382 GRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCccCCC
Confidence            77766665443   34555553 3   334444456667777777763

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.50  E-value=6.5e-11  Score=108.62  Aligned_cols=264  Identities=17%  Similarity=0.177  Sum_probs=165.8

Q ss_pred             EEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226           98 IAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus        98 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      ...+++.+++++.+|.+..+|..+++.+.................+.++.++.+|.+..||..+++.+.........   
T Consensus       101 p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---  177 (377)
T TIGR03300       101 VGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA---  177 (377)
T ss_pred             eEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc---
Confidence            33467888899999999999999999887765433322223334568888889999999999888776655321100   


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc----C------eE-EEEEcC
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE----P------IN-ALVVAD  246 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~------v~-~~~~~~  246 (434)
                         ..+       .....+    .+.  +..++.+..+|.+..+|.++|+.+........    .      +. ...+ .
T Consensus       178 ---~~~-------~~~~sp----~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~  240 (377)
T TIGR03300       178 ---LTL-------RGSASP----VIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-D  240 (377)
T ss_pred             ---eee-------cCCCCC----EEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-E
Confidence               000       000111    111  34677888889999999999987765432110    0      11 1112 2


Q ss_pred             CCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCccc
Q 046226          247 DGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ  326 (434)
Q Consensus       247 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  326 (434)
                      ++.++.++.+|.+..||..  .+.......  .    .......  ..+..+++++.+|.|..+|..+.+...+.. .+.
T Consensus       241 ~~~vy~~~~~g~l~a~d~~--tG~~~W~~~--~----~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~-~~~  309 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLR--SGRVLWKRD--A----SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKND-ELK  309 (377)
T ss_pred             CCEEEEEEcCCEEEEEECC--CCcEEEeec--c----CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccc-ccc
Confidence            4578888889999999986  222222111  1    1111122  246788888999999999987665544331 111


Q ss_pred             CcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE-EEEeecccCCCCCCcccEEEEeecCCeE
Q 046226          327 GHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC-AIAFLGRFGEETEDEYCTICTGSLDGVL  405 (434)
Q Consensus       327 ~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~Dg~v  405 (434)
                      .  .........++.+++++.+|.|+++|..++   +.+..++.+...+.. -++.           +..|+.++.||.|
T Consensus       310 ~--~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG---~~~~~~~~~~~~~~~sp~~~-----------~~~l~v~~~dG~l  373 (377)
T TIGR03300       310 Y--RQLTAPAVVGGYLVVGDFEGYLHWLSREDG---SFVARLKTDGSGIASPPVVV-----------GDGLLVQTRDGDL  373 (377)
T ss_pred             C--CccccCEEECCEEEEEeCCCEEEEEECCCC---CEEEEEEcCCCccccCCEEE-----------CCEEEEEeCCceE
Confidence            1  122233446889999999999999999888   666676666544333 2232           3458889999999


Q ss_pred             EEE
Q 046226          406 KMW  408 (434)
Q Consensus       406 ~iw  408 (434)
                      +.+
T Consensus       374 ~~~  376 (377)
T TIGR03300       374 YAF  376 (377)
T ss_pred             EEe
Confidence            876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=2.9e-12  Score=121.26  Aligned_cols=184  Identities=19%  Similarity=0.262  Sum_probs=146.7

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccE----EEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeecc
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMV----VAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIP  174 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v----~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~  174 (434)
                      +...++.+..++.+.+||...+.....+.......    .-+.++++  ++++|+.-+.|.+|+....+...        
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------  169 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI--------  169 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc--------
Confidence            77888999999999999998877777665443322    11223444  78888889999999976222211        


Q ss_pred             CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE-EcccCccCeEEEEEcCCCeEEEE
Q 046226          175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE-TIQAHSEPINALVVADDGVLYSA  253 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~s~  253 (434)
                                    .+.+|.+.|.++.++-||.++++.++|.++++|++++.+... ..-+|...|..+.+.|+ .++++
T Consensus       170 --------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~  234 (967)
T KOG0974|consen  170 --------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITV  234 (967)
T ss_pred             --------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEe
Confidence                          123799999999999999999999999999999999988766 66789999999999988 99999


Q ss_pred             eCCCeEEEEecccccCcceeEEEEEecccc-cCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          254 SDDATVRVWRRYFYSENQLHTLILTLTAKY-SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       254 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      +.|.+.++|+..       ......+.+|. ..+..++..++...+++++.||.+++||+..
T Consensus       235 gedctcrvW~~~-------~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  235 GEDCTCRVWGVN-------GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccceEEEEEecc-------cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999999755       12222555554 4689999999999999999999999999653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.46  E-value=3.5e-11  Score=107.42  Aligned_cols=186  Identities=17%  Similarity=0.224  Sum_probs=148.9

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeeccC---CCccEEEEEE------eC--------------C--EEEEEEcCCeEEE
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLKA---KTSMVVAMEV------SH--------------D--RVYAAYGDGKIRV  156 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~------~~--------------~--~l~~~s~dg~i~v  156 (434)
                      ..++|....||.+||||...++....+..   -.+..++..|      +|              +  .++.|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            46889999999999999998887766643   2333444444      11              1  5778888999999


Q ss_pred             eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc
Q 046226          157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS  236 (434)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  236 (434)
                      |++..++....+..                    .+|.+.|.++.++.+-..|.+++.|+.+..|+...++.++.++...
T Consensus        85 ys~~~g~it~~~st--------------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~  144 (541)
T KOG4547|consen   85 YSVAGGEITAKLST--------------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK  144 (541)
T ss_pred             EEecCCeEEEEEec--------------------CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC
Confidence            99876655444421                    2699999999999999999999999999999999999999999999


Q ss_pred             cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-----CCEEEEE-cCCCeEEE
Q 046226          237 EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-----DGLLYGG-CTDGYIHY  309 (434)
Q Consensus       237 ~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~i  309 (434)
                      ..+.+++++||+ .+++++  +.|++||+.      ..+.+..+.+|.++|+++.|..+     |.+++++ ..+..+.+
T Consensus       145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~------~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~  216 (541)
T KOG4547|consen  145 PLVSSLCISPDGKILLTAS--RQIKVLDIE------TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV  216 (541)
T ss_pred             CccceEEEcCCCCEEEecc--ceEEEEEcc------CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence            999999999999 777766  589999987      77888999999999999999876     6666654 44566778


Q ss_pred             EEcCcc
Q 046226          310 WHKGWF  315 (434)
Q Consensus       310 ~d~~~~  315 (434)
                      |-+...
T Consensus       217 w~v~~~  222 (541)
T KOG4547|consen  217 WVVEKE  222 (541)
T ss_pred             EEEEcc
Confidence            876543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.45  E-value=1.2e-09  Score=98.29  Aligned_cols=304  Identities=10%  Similarity=0.050  Sum_probs=170.6

Q ss_pred             ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEE
Q 046226           81 SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIR  155 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~  155 (434)
                      +.+.+.++......-..+.|  +|+++++++.||.|.++|+.+.+.+.+++.... ...++++++  ++++++ .++.+.
T Consensus        25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~  103 (369)
T PF02239_consen   25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVS  103 (369)
T ss_dssp             T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEE
T ss_pred             CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCcee
Confidence            45566666655444344566  899999999999999999999999999987554 678999987  666554 589999


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEE-Ecc
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIE-TIQ  233 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~-~~~  233 (434)
                      ++|.++.+.++.+.....+..               .....+..+..++....++..-. .+.|.+.|....+.+. ...
T Consensus       104 v~D~~tle~v~~I~~~~~~~~---------------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i  168 (369)
T PF02239_consen  104 VIDAETLEPVKTIPTGGMPVD---------------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI  168 (369)
T ss_dssp             EEETTT--EEEEEE--EE-TT---------------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred             Eeccccccceeeccccccccc---------------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence            999988877777654332211               13456778888888886665544 5888888987654332 222


Q ss_pred             cCccCeEEEEEcCCC-e-EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC----------CEEEEE
Q 046226          234 AHSEPINALVVADDG-V-LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD----------GLLYGG  301 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~  301 (434)
                      ..........|.|++ + +++...+..|-++|..  ..............|..+...+ .+|..          ...++.
T Consensus       169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~--~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~  245 (369)
T PF02239_consen  169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK--TGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPL  245 (369)
T ss_dssp             E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT--TTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred             cccccccccccCcccceeeecccccceeEEEeec--cceEEEEeeccccccccccccc-cCCCcceEEeeccccceeccc
Confidence            244567789999999 4 4555677899999977  1111111111122333333332 23322          222111


Q ss_pred             cCCCeEEEEEcCcccccccccCcccCcccce-EEEEeeCCEEEEe----cCCCcEEEEeccCCCceeeEEEeeccc-cce
Q 046226          302 CTDGYIHYWHKGWFSAQLQYGGALQGHTHAV-MCLASVANYVISG----SADSTSRVWAREQDGRHTMLAVLVGHR-GPI  375 (434)
Q Consensus       302 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v  375 (434)
                      -....+.+||....    +....+......+ ....++++++++.    ...+.|.++|.++.   +.+..+.... ..+
T Consensus       246 ig~~~v~v~d~~~w----kvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl---~~~~~i~~~~~~~~  318 (369)
T PF02239_consen  246 IGTDPVSVHDDYAW----KVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL---KVVKTITPGPGKRV  318 (369)
T ss_dssp             EE--TTT-STTTBT----SEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---EEEE-HHHHHT--E
T ss_pred             ccCCccccchhhcC----eEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc---ceeEEEeccCCCcE
Confidence            11223334443322    2222233322332 2234456688877    45689999999987   5555554333 258


Q ss_pred             eEEEEeecccCCCCCCcccEEEEeec--CCeEEEEecCCCCccccc
Q 046226          376 RCAIAFLGRFGEETEDEYCTICTGSL--DGVLKMWRVTRPKSSCGH  419 (434)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~l~s~~~--Dg~v~iw~~~~~~~~~~~  419 (434)
                      ..+.|+++         |..+..+..  +|.|.+||..+.+.....
T Consensus       319 ~h~ef~~d---------G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i  355 (369)
T PF02239_consen  319 VHMEFNPD---------GKEVWVSVWDGNGAIVVYDAKTLKEKKRI  355 (369)
T ss_dssp             EEEEE-TT---------SSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             eccEECCC---------CCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence            88999999         665544433  337999999988765543

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.45  E-value=5.2e-11  Score=97.26  Aligned_cols=271  Identities=13%  Similarity=0.116  Sum_probs=175.0

Q ss_pred             CCeEEEecCCCceeEe--ec-cCCCccEEEEEEeC-----C-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226          111 SNVIRIWKQPEFTECG--RL-KAKTSMVVAMEVSH-----D-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR  181 (434)
Q Consensus       111 dg~i~iwd~~~~~~~~--~~-~~~~~~v~~l~~~~-----~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      -|.+.+|++.+.+...  ++ ......+..+.|.-     + .++-+-.+|.|.++..........+.-....    .  
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~----k--  118 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK----K--  118 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh----h--
Confidence            3677888877655433  11 12344566777753     2 4566777899999976544332222110000    0  


Q ss_pred             EEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe--eEEEcccCccCeEEEEEcCCC--eEEEEeCCC
Q 046226          182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADDG--VLYSASDDA  257 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg  257 (434)
                                -......++.|++.+..++++..+|.+.+-+.....  .++.++.|.-...-..|+...  .+++|+.|+
T Consensus       119 ----------i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~  188 (339)
T KOG0280|consen  119 ----------ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDG  188 (339)
T ss_pred             ----------hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCc
Confidence                      011135678889999999999999999966655543  345888999999888888655  899999999


Q ss_pred             eEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEE
Q 046226          258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA  336 (434)
Q Consensus       258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  336 (434)
                      .+..||+|...    ...-.....|...|.+|.-+| .+.++++|+.|-.|++||.+....+....    .-.+.|+.+.
T Consensus       189 ~l~~~D~R~p~----~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----~v~GGVWRi~  260 (339)
T KOG0280|consen  189 SLSCWDIRIPK----TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----KVGGGVWRIK  260 (339)
T ss_pred             eEEEEEecCCc----ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----ccccceEEEE
Confidence            99999998211    122223556788899998877 57899999999999999998555443321    1225677777


Q ss_pred             eeCC---EEEEecCCCcEEEEeccCCCce--eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee-cCCeEE-EEe
Q 046226          337 SVAN---YVISGSADSTSRVWAREQDGRH--TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS-LDGVLK-MWR  409 (434)
Q Consensus       337 ~~~~---~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~-iw~  409 (434)
                      ..+.   .++.++.-.-.+|-+...+...  ..+...+.|.+-+....|...         ..+|+|++ .|..++ +|-
T Consensus       261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~---------~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  261 HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK---------DSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             ecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccc---------cceeeeeeccccceeeeee
Confidence            6643   2344444444667776654211  244556677777777777433         45788875 577755 786


Q ss_pred             cCCCC
Q 046226          410 VTRPK  414 (434)
Q Consensus       410 ~~~~~  414 (434)
                      .-++.
T Consensus       332 ~~t~~  336 (339)
T KOG0280|consen  332 HITGE  336 (339)
T ss_pred             eccCC
Confidence            55554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=6.8e-11  Score=110.25  Aligned_cols=230  Identities=9%  Similarity=-0.052  Sum_probs=140.1

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG  186 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
                      ..|.+||... .....+..|...+.+.+|+||  .|+..+.   +..|.+||+.++......                  
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~------------------  242 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG------------------  242 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee------------------
Confidence            3788899754 444556677888999999998  5665553   568999998765432111                  


Q ss_pred             cccccCcCCCeEEEEEecCCCEEE-EEecCCc--EEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCC--eE
Q 046226          187 KDKMMKHMGPITSIAINVSDDTLY-SASLDKT--IKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDA--TV  259 (434)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i  259 (434)
                           .+.+.+...+|+|||+.|+ +.+.++.  |++||+.+++. ..+..+........|+||+ .|+..+ .+|  .|
T Consensus       243 -----~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~I  316 (435)
T PRK05137        243 -----NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQL  316 (435)
T ss_pred             -----cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeE
Confidence                 2455677889999999876 4555554  88889987765 4455566667789999999 566554 344  57


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC---CeEEEEEcCcccccccccCcccCcccceEEEE
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD---GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA  336 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  336 (434)
                      .++|+.   ......    +......+....|+|+|+.|+....+   ..|.+||+...... .+ .  .+....-..++
T Consensus       317 y~~d~~---g~~~~~----lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~l-t--~~~~~~~p~~s  385 (435)
T PRK05137        317 YVMNAD---GSNPRR----ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-IL-T--SGFLVEGPTWA  385 (435)
T ss_pred             EEEECC---CCCeEE----eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ec-c--CCCCCCCCeEC
Confidence            777765   111211    11223445668899999999876543   36788887433221 11 1  11111223344


Q ss_pred             eeCCEEEEecCC------CcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          337 SVANYVISGSAD------STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       337 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      .+|+.|+..+.+      ..++++|+..+..    ..+. ..+.+...+|+|
T Consensus       386 pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~----~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        386 PNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE----REVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCCCEEEEEEccCCCCCcceEEEEECCCCce----EEcc-CCCCccCcccCC
Confidence            567766554432      2577778765421    2222 233455556665

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.43  E-value=1.3e-12  Score=129.64  Aligned_cols=187  Identities=17%  Similarity=0.279  Sum_probs=145.3

Q ss_pred             ccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226          133 SMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY  210 (434)
Q Consensus       133 ~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  210 (434)
                      ..|.++.-+|.  +.++|+.||.|++|....++.+..++.                     .....|+.+.|+.+|+.+.
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt---------------------~g~s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT---------------------AGNSRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec---------------------cCcchhhhhhhcccCCcee
Confidence            34556655664  889999999999999887777666643                     2337899999999999999


Q ss_pred             EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEe---CCCeEEEEecccccCcceeEEEEEecccccCeE
Q 046226          211 SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSAS---DDATVRVWRRYFYSENQLHTLILTLTAKYSPVK  287 (434)
Q Consensus       211 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  287 (434)
                      .+..||.+.+|.+. .++....+.|.....++.|-. ..+++++   .++.+.+||....   .....+.  ..|.+.++
T Consensus      2268 i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~---~~~s~v~--~~H~~gaT 2340 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLP---PMNSLVH--TCHDGGAT 2340 (2439)
T ss_pred             eeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccC---cccceee--eecCCCce
Confidence            99999999999986 677788888999999998876 4455543   5788999997621   1222222  78999999


Q ss_pred             EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226          288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ++++.|..+.|++|+.+|.|.+||++.....    +.++.       +. ...++++|+..|.++||++..-
T Consensus      2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql~----h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQLR----HTFQA-------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             EEEEcCcceEEEecCCcCcEEEeehHHHHHH----HHhhh-------hh-hhheeeccCcccceEEEEcccc
Confidence            9999999999999999999999998643222    12211       22 4569999999999999999865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.42  E-value=3.6e-09  Score=93.08  Aligned_cols=273  Identities=10%  Similarity=-0.045  Sum_probs=162.6

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------cCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------GDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      +.|.+.|..+++.+..+.....+-. + ++|+  .++++.          .+..|.+||..+.+.+..+.+...|..   
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~---  101 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF---  101 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh---
Confidence            8999999999999988875444333 4 8887  555554          489999999998888777754322110   


Q ss_pred             eeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-c-CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCC
Q 046226          180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-L-DKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDA  257 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg  257 (434)
                                  .....-..++++|||++|++.. . +..|.+.|+.+++.+.++.... ...-...+++..+ .-+.||
T Consensus       102 ------------~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~-~~~~Dg  167 (352)
T TIGR02658       102 ------------LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF-MHCRDG  167 (352)
T ss_pred             ------------hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE-EEeecC
Confidence                        0123345788999999999776 3 6899999999999988887532 2222222222222 223444


Q ss_pred             eEEEEecccccCcceeEEEEEecccccCeEE-EEEec-CCCEEEEEcCCCeEEEEEcCcccccccc-cCcccC-------
Q 046226          258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKT-LTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQY-GGALQG-------  327 (434)
Q Consensus       258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-------  327 (434)
                      ......+...... .......+.....++.. =.+.+ +|+++++..+ |.|.+.|+......... ...+..       
T Consensus       168 ~~~~v~~d~~g~~-~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w  245 (352)
T TIGR02658       168 SLAKVGYGTKGNP-KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW  245 (352)
T ss_pred             ceEEEEecCCCce-EEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccccc
Confidence            4444333211110 00011111110011000 03455 8888888777 99999996543221111 000000       


Q ss_pred             ccc--ceEEEEeeCCEEEEec----------CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc-
Q 046226          328 HTH--AVMCLASVANYVISGS----------ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC-  394 (434)
Q Consensus       328 ~~~--~v~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-  394 (434)
                      ...  ...++..+++.++...          ..+.|.++|..+.   +.+..+.. ...+..++++|+         ++ 
T Consensus       246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~D---------gkp  312 (352)
T TIGR02658       246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQD---------AKP  312 (352)
T ss_pred             CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCC---------CCe
Confidence            111  1234444566655532          2257999999887   56665553 347889999999         66 


Q ss_pred             EEEEee-cCCeEEEEecCCCCcccc
Q 046226          395 TICTGS-LDGVLKMWRVTRPKSSCG  418 (434)
Q Consensus       395 ~l~s~~-~Dg~v~iw~~~~~~~~~~  418 (434)
                      +|++.. .++.|.+.|..+++.+..
T Consensus       313 ~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       313 LLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             EEEEeCCCCCcEEEEECcCCeEEee
Confidence            666555 688999999999887654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.2e-10  Score=106.26  Aligned_cols=195  Identities=14%  Similarity=0.048  Sum_probs=119.0

Q ss_pred             cCCCeEEEEEecCCCEEEEEec---CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEE-eCCC--eEEEEecc
Q 046226          193 HMGPITSIAINVSDDTLYSASL---DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSA-SDDA--TVRVWRRY  265 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg--~i~iwd~~  265 (434)
                      +...+.+.+|+|||+.|+..+.   +..|++||+.+++... +....+.+....|+||| .|+.. ..+|  .|.+||+.
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            5668999999999999886542   4579999998876432 22233345578999999 55543 4454  58888876


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEE--EcCcccccccccCcccCcccceEEEEeeCCEE
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYW--HKGWFSAQLQYGGALQGHTHAVMCLASVANYV  342 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  342 (434)
                      .   ..   . ..+..+...+....|+|||+.|+..+. ++...||  |+.....  ... ...++...-..++.+|++|
T Consensus       276 t---g~---~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~l-t~~~~~~~~~~~SpDG~~I  345 (429)
T PRK03629        276 S---GQ---I-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRI-TWEGSQNQDADVSSDGKFM  345 (429)
T ss_pred             C---CC---E-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEe-ecCCCCccCEEECCCCCEE
Confidence            1   11   1 122333446778999999998877665 3444555  5443221  111 1112221223445567777


Q ss_pred             EEecCC---CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCe---EEEEecCC
Q 046226          343 ISGSAD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV---LKMWRVTR  412 (434)
Q Consensus       343 ~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~---v~iw~~~~  412 (434)
                      +..+.+   ..|++||+.++.. ..+.   . ........|+|+         |++|+.++.|+.   +.+|+++.
T Consensus       346 a~~~~~~g~~~I~~~dl~~g~~-~~Lt---~-~~~~~~p~~SpD---------G~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        346 VMVSSNGGQQHIAKQDLATGGV-QVLT---D-TFLDETPSIAPN---------GTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             EEEEccCCCceEEEEECCCCCe-EEeC---C-CCCCCCceECCC---------CCEEEEEEcCCCceEEEEEECCC
Confidence            665443   3588899987632 2222   1 112335678888         999999888765   67777753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.41  E-value=3.4e-11  Score=98.30  Aligned_cols=107  Identities=17%  Similarity=0.277  Sum_probs=81.9

Q ss_pred             CccEEEEEEeCC--EEEE--EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226          132 TSMVVAMEVSHD--RVYA--AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD  207 (434)
Q Consensus       132 ~~~v~~l~~~~~--~l~~--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (434)
                      .++|.+++|+|+  .+++  |..++.|.+||++ .+.+..+                        +...++.+.|+|+|+
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~------------------------~~~~~n~i~wsP~G~  113 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF------------------------GTQPRNTISWSPDGR  113 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee------------------------cCCCceEEEECCCCC
Confidence            457999999997  4444  3457899999985 2222222                        456778999999999


Q ss_pred             EEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC------CCeEEEEecc
Q 046226          208 TLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD------DATVRVWRRY  265 (434)
Q Consensus       208 ~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~------dg~i~iwd~~  265 (434)
                      +|++++.+   |.|.+||+++.+.+.... | ..+..++|+|+| +++++..      |..++||+..
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            99998754   679999999988887775 3 347899999999 7777653      7888999865

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.41  E-value=2.1e-11  Score=101.62  Aligned_cols=250  Identities=17%  Similarity=0.227  Sum_probs=178.2

Q ss_pred             eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      ..+..+++|.+.|++...-|.  .+++++.|.+++||--... +.-..+                     ......++++
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI---------------------~~~mP~~~~~   73 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI---------------------YHYMPSPCSA   73 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh---------------------hhhCCCCceE
Confidence            345667888888888777664  8999999999999953322 111111                     1135678999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcC----CCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE
Q 046226          200 IAINVSDDTLYSASLDKTIKVWRIR----DSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~  274 (434)
                      +.+.++...|++|-..|++.-+.+.    ....++....|...+..+-|+... .+++.+.|..+. |-... .+.....
T Consensus        74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e-~~~~lg~  151 (404)
T KOG1409|consen   74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE-SGNRLGG  151 (404)
T ss_pred             eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeec-cCCcccc
Confidence            9999999999999999999988663    345566677899999999998666 888888887764 42220 0111111


Q ss_pred             EEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEE
Q 046226          275 LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSR  352 (434)
Q Consensus       275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~  352 (434)
                      ....     ...+.+.+.-.  +.+.|...|.|.+-.+.  .........+.+|.+.+.++.|++  ..|.+|..|..+.
T Consensus       152 Y~~~-----~~~t~~~~d~~--~~fvGd~~gqvt~lr~~--~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi  222 (404)
T KOG1409|consen  152 YNFE-----TPASALQFDAL--YAFVGDHSGQITMLKLE--QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI  222 (404)
T ss_pred             eEee-----ccCCCCceeeE--EEEecccccceEEEEEe--ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence            1110     11112222211  66677777877776654  233444557889999999999984  4899999999999


Q ss_pred             EEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       353 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      +||+....  ....++.+|.+.|..+...+.         -..+++++.||.|-+|+++....
T Consensus       223 ~wdigg~~--g~~~el~gh~~kV~~l~~~~~---------t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  223 MWDIGGRK--GTAYELQGHNDKVQALSYAQH---------TRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             EEeccCCc--ceeeeeccchhhhhhhhhhhh---------heeeeeccCCCeEEEEeccceee
Confidence            99997643  456678899999999888777         78899999999999999986543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=6.8e-11  Score=109.73  Aligned_cols=198  Identities=14%  Similarity=0.027  Sum_probs=122.0

Q ss_pred             CcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCCeEEEEeccc
Q 046226          192 KHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDATVRVWRRYF  266 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~i~iwd~~~  266 (434)
                      .+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+.+..|+||+ .|+ +.+.+|...+|.+..
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            366788999999999999877643   359999999887543 33334556789999999 554 567788878876652


Q ss_pred             ccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe
Q 046226          267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG  345 (434)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~  345 (434)
                      ....     ...+..+........|+|||+.|+..+. +|...||.+.......... ...+....-..++++|++|+..
T Consensus       272 ~~~~-----~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~  345 (427)
T PRK02889        272 DGSG-----LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLAYI  345 (427)
T ss_pred             CCCC-----cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEEEE
Confidence            1111     2223334444567889999998876554 5666777654222211111 1112211123455678888776


Q ss_pred             cCCC---cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC-e--EEEEec
Q 046226          346 SADS---TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG-V--LKMWRV  410 (434)
Q Consensus       346 ~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-~--v~iw~~  410 (434)
                      +.++   .|++||+.++.. .   .+.. ........|+|+         |++|+.++.++ .  +.+-++
T Consensus       346 s~~~g~~~I~v~d~~~g~~-~---~lt~-~~~~~~p~~spd---------g~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        346 SRVGGAFKLYVQDLATGQV-T---ALTD-TTRDESPSFAPN---------GRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             EccCCcEEEEEEECCCCCe-E---EccC-CCCccCceECCC---------CCEEEEEEecCCCEEEEEEEC
Confidence            6554   699999987632 2   2222 223456788888         77777766544 3  444444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=8.7e-11  Score=109.38  Aligned_cols=196  Identities=17%  Similarity=0.073  Sum_probs=121.1

Q ss_pred             CcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eE-EEEeCCC--eEEEEec
Q 046226          192 KHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VL-YSASDDA--TVRVWRR  264 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg--~i~iwd~  264 (434)
                      .+...+.+.+|+||++.|+..+.+   ..|++||+.+++... +....+...+..|+|+| .+ ++.+.+|  .|.+||+
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            366788999999999999877643   469999998876533 33334455678999999 44 4555555  5888887


Q ss_pred             ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCe--EEEEEcCcccccccccCcccCcccceEEEEeeCCE
Q 046226          265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGY--IHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANY  341 (434)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  341 (434)
                      ..   ..    ...+..+.......+|+|||+.|+..+. +|.  |+++|+......  .. ...+....-.+++.+|++
T Consensus       280 ~~---g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--~l-t~~g~~~~~~~~SpDG~~  349 (433)
T PRK04922        280 GS---RQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--RL-TFQGNYNARASVSPDGKK  349 (433)
T ss_pred             CC---CC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Ee-ecCCCCccCEEECCCCCE
Confidence            61   11    1223333344567899999998887654 454  556665433221  11 112222222344556887


Q ss_pred             EEEecCCC---cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC---CeEEEEecCC
Q 046226          342 VISGSADS---TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD---GVLKMWRVTR  412 (434)
Q Consensus       342 l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D---g~v~iw~~~~  412 (434)
                      ++..+.++   .|.+||+.++.   .. .+. +........|+|+         |++|+..+.+   +.|.++++..
T Consensus       350 Ia~~~~~~~~~~I~v~d~~~g~---~~-~Lt-~~~~~~~p~~spd---------G~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        350 IAMVHGSGGQYRIAVMDLSTGS---VR-TLT-PGSLDESPSFAPN---------GSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             EEEEECCCCceeEEEEECCCCC---eE-ECC-CCCCCCCceECCC---------CCEEEEEEecCCceEEEEEECCC
Confidence            77654332   69999997763   22 222 2223445688888         8877766653   4577777754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=7e-11  Score=96.46  Aligned_cols=146  Identities=15%  Similarity=0.257  Sum_probs=96.3

Q ss_pred             EEEEEecCCCEEEEEec----------CCcEEEEEcCC-CeeEEEccc-CccCeEEEEEcCCC-eE--EEEeCCCeEEEE
Q 046226          198 TSIAINVSDDTLYSASL----------DKTIKVWRIRD-SKCIETIQA-HSEPINALVVADDG-VL--YSASDDATVRVW  262 (434)
Q Consensus       198 ~~~~~~~~~~~l~s~~~----------dg~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~-~l--~s~~~dg~i~iw  262 (434)
                      ..+.|+++|++|+.-..          -|...+|.++. ...+..+.. ..++|.+++|+|++ .+  +.|..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45788899988775433          13355555522 233444433 34579999999999 54  334567899999


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC---CCeEEEEEcCcccccccccCcccCcccceEEEEe--
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--  337 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--  337 (434)
                      |++       ...+..+  ....+..+.|+|+|++|++++.   .|.|.+||++......    ... | ..+..++|  
T Consensus        89 d~~-------~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~-~-~~~t~~~WsP  153 (194)
T PF08662_consen   89 DVK-------GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFE-H-SDATDVEWSP  153 (194)
T ss_pred             cCc-------ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----ccc-c-CcEEEEEEcC
Confidence            985       2222333  3457789999999999999864   4679999987433322    222 2 23456666  


Q ss_pred             eCCEEEEecC------CCcEEEEeccC
Q 046226          338 VANYVISGSA------DSTSRVWAREQ  358 (434)
Q Consensus       338 ~~~~l~s~~~------dg~i~iwd~~~  358 (434)
                      +|++|+++..      |+.++||+...
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEecC
Confidence            4778888764      78899999864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=2.8e-10  Score=106.18  Aligned_cols=196  Identities=9%  Similarity=-0.045  Sum_probs=123.7

Q ss_pred             CcCCCeEEEEEecCCCEEEEEec---CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eE-EEEeCCCe--EEEEec
Q 046226          192 KHMGPITSIAINVSDDTLYSASL---DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VL-YSASDDAT--VRVWRR  264 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~--i~iwd~  264 (434)
                      .|...+.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+....|+||| .| ++.+.++.  |.+||+
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            47778999999999999887653   468999999888653 344456677889999999 54 45666665  666676


Q ss_pred             ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceE--EEEeeC
Q 046226          265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVM--CLASVA  339 (434)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~  339 (434)
                      .  . ..    ...+..+........|+|||+.|+..+. +|  .|+++|+....... +    ..+...+.  .++.+|
T Consensus       278 ~--~-~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-l----t~~~~~~~~~~~SpdG  345 (435)
T PRK05137        278 R--S-GT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-I----SFGGGRYSTPVWSPRG  345 (435)
T ss_pred             C--C-Cc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-e----ecCCCcccCeEECCCC
Confidence            5  1 11    1223334445667899999998887664 33  67777865432211 1    11122223  344567


Q ss_pred             CEEEEecCC---CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC------CeEEEEec
Q 046226          340 NYVISGSAD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD------GVLKMWRV  410 (434)
Q Consensus       340 ~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D------g~v~iw~~  410 (434)
                      ++|+....+   ..|.+||+..+.. .   .+. ....+....|+|+         |++|+..+.+      ..|.+.++
T Consensus       346 ~~ia~~~~~~~~~~i~~~d~~~~~~-~---~lt-~~~~~~~p~~spD---------G~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        346 DLIAFTKQGGGQFSIGVMKPDGSGE-R---ILT-SGFLVEGPTWAPN---------GRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             CEEEEEEcCCCceEEEEEECCCCce-E---ecc-CCCCCCCCeECCC---------CCEEEEEEccCCCCCcceEEEEEC
Confidence            777765543   3688888765421 1   221 1224567888888         7877665443      25777787


Q ss_pred             CCCC
Q 046226          411 TRPK  414 (434)
Q Consensus       411 ~~~~  414 (434)
                      ..++
T Consensus       412 ~g~~  415 (435)
T PRK05137        412 TGRN  415 (435)
T ss_pred             CCCc
Confidence            6544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=3e-12  Score=113.22  Aligned_cols=285  Identities=16%  Similarity=0.198  Sum_probs=180.5

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC-------ceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEE
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE-------FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIR  155 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~  155 (434)
                      +..+.||...|.+++-  +.+-+++++.|++|++|.++.       ..+..+++.|+.+|.++.|-.+.-..++.||.|.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH  807 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH  807 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence            4568899999999988  788999999999999998753       3466788999999999999998777788899999


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcc-
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQ-  233 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~-  233 (434)
                      +||.--+.....+....  .               .+..+.|.|+.- -+...+..| +...+|+++|.+.++-...++ 
T Consensus       808 lWDPFigr~Laq~~dap--k---------------~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kV  869 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAP--K---------------EGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKV  869 (1034)
T ss_pred             eecccccchhHhhhcCc--c---------------cCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEe
Confidence            99965444333221110  0               012233444321 133444444 678899999999887655554 


Q ss_pred             ----cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEE
Q 046226          234 ----AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIH  308 (434)
Q Consensus       234 ----~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  308 (434)
                          +....+.++++.+.| .++++-.+|.|.+.|.+      ....+..+...+.....++ .|..+.|+....|..+.
T Consensus       870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR------~G~vINswrpmecdllqla-apsdq~L~~saldHsla  942 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR------NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLA  942 (1034)
T ss_pred             ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC------CCceeccCCcccchhhhhc-CchhHHHHhhcccceeE
Confidence                345678999999999 99999999999999988      3334444433333333333 34556677666777777


Q ss_pred             E-EEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC-CceeeEEEe--eccccceeEEEEeecc
Q 046226          309 Y-WHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD-GRHTMLAVL--VGHRGPIRCAIAFLGR  384 (434)
Q Consensus       309 i-~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~--~~h~~~v~~~~~~~~~  384 (434)
                      + |-.-....  .+  ..+....+..-+..-|--|++......+.+|.-... .....+..+  ....+..++++..|- 
T Consensus       943 VnWhaldgim--h~--q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL- 1017 (1034)
T KOG4190|consen  943 VNWHALDGIM--HL--QDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL- 1017 (1034)
T ss_pred             eeehhcCCee--ee--ccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc-
Confidence            7 65321111  11  011111111122223556677766677777742211 000111111  123556778888877 


Q ss_pred             cCCCCCCcccEEEEeecCCeEEE
Q 046226          385 FGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       385 ~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                              ..-++.|.+.|.|.+
T Consensus      1018 --------N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 --------NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             --------cchhhccCCCCceee
Confidence                    667888888888875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.36  E-value=6.1e-08  Score=87.48  Aligned_cols=254  Identities=16%  Similarity=0.149  Sum_probs=154.8

Q ss_pred             ccEEEEEE--cCCEEEEEeC----CCeEEEecCCCc----eeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeec
Q 046226           93 GQILCIAV--GNGFIYTGSD----SNVIRIWKQPEF----TECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRS  159 (434)
Q Consensus        93 ~~v~~~~~--~~~~l~tg~~----dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~  159 (434)
                      .....+++  ++++|++...    ++.|..|++...    +.+.+.......-..++++++  .|+++. .+|.|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            33455666  8888888876    568988887653    334444433445567889887  666666 4999999999


Q ss_pred             CCCCCceeeE-eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCe--e--EEEcc
Q 046226          160 TWDNGVKHVK-LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSK--C--IETIQ  233 (434)
Q Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~--~--~~~~~  233 (434)
                      .....+.... ......         .+............++.|+|+++++++... ...|.+|++....  .  ...+.
T Consensus       117 ~~~g~l~~~~~~~~~~g---------~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~  187 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEG---------SGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK  187 (345)
T ss_dssp             CTTSEEEEEEEEEESEE---------EESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred             cCCcccceeeeecccCC---------CCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence            8754433331 110000         000001123455788999999999888643 3479999997654  2  12222


Q ss_pred             -cCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEeccc------ccCeEEEEEecCCCEEEEEc-C
Q 046226          234 -AHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK------YSPVKTLTLTLDDGLLYGGC-T  303 (434)
Q Consensus       234 -~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-~  303 (434)
                       .....-+.+.|+|++  .+++.-.++.|.++++.....  ...........      ......|+++|||++|+++. .
T Consensus       188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~  265 (345)
T PF10282_consen  188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG  265 (345)
T ss_dssp             CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred             cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence             244567899999998  455666788999998872222  22222222111      12578899999999988865 4


Q ss_pred             CCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEec-CCCcEEEEecc
Q 046226          304 DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGS-ADSTSRVWARE  357 (434)
Q Consensus       304 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~  357 (434)
                      .+.|.+|+++.....................+++  +|++|+++. .++.|.+|+++
T Consensus       266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            6789999995443333333333222223455655  688777665 56799999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=2.1e-10  Score=95.85  Aligned_cols=273  Identities=15%  Similarity=0.207  Sum_probs=162.6

Q ss_pred             CccEEEEEEeC--CEEEEEEcCCeEEEeecCCCCCceeeEee-eccCCCCceeEEEeccccccCcCCCeEEEEEecCC--
Q 046226          132 TSMVVAMEVSH--DRVYAAYGDGKIRVWRSTWDNGVKHVKLA-TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD--  206 (434)
Q Consensus       132 ~~~v~~l~~~~--~~l~~~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--  206 (434)
                      ..-|.++.|..  ++|++|..+|.|.++.-.....- .+... ...........+     +...-...|..+.|.+++  
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYL-----kSleieEKinkIrw~~~~n~   98 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYL-----KSLEIEEKINKIRWLDDGNL   98 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchh-----hhhhhhhhhhhceecCCCCc
Confidence            44578888865  49999999999999965433221 11111 111111111111     111345678899998865  


Q ss_pred             CEEEEEecCCcEEEEEcCCCee-----------------------------------EEEc-ccCccCeEEEEEcCCCeE
Q 046226          207 DTLYSASLDKTIKVWRIRDSKC-----------------------------------IETI-QAHSEPINALVVADDGVL  250 (434)
Q Consensus       207 ~~l~s~~~dg~i~vwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~l  250 (434)
                      ..++..+.|.+|++|.+.....                                   .+.+ .+|.--|++|.++.|+..
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence            4577778899999998753210                                   0111 247778999999999944


Q ss_pred             EEEeCCCeEEEEecccccCcceeEEEEEec----ccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccC--
Q 046226          251 YSASDDATVRVWRRYFYSENQLHTLILTLT----AKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGG--  323 (434)
Q Consensus       251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  323 (434)
                      +....|=.|.+|++....  +...++...+    ....-|++..|+| ..+.++-.+..|+|++-|++....-.....  
T Consensus       179 ~lSADdLRINLWnlei~d--~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  179 FLSADDLRINLWNLEIID--QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             EeeccceeeeeccccccC--CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            455677889999987222  2222222211    1223578889999 457788888999999999984321110000  


Q ss_pred             --c--------ccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccc------eeEEEEeeccc
Q 046226          324 --A--------LQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP------IRCAIAFLGRF  385 (434)
Q Consensus       324 --~--------~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~------v~~~~~~~~~~  385 (434)
                        .        +..-...|..+.|+  |+|+++-+. -+|++||+.-..  .++.+++-|..-      +..-...-+++
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKF  333 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKF  333 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhhee
Confidence              0        11112345666664  778887643 689999995433  455666666421      10000111122


Q ss_pred             CCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          386 GEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       386 ~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ...++.++.+++||+....++++++..+..
T Consensus       334 ec~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  334 ECSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             EEEEcCCcceEecccccceEEEecCCCCcc
Confidence            222333378999999999999999776643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=4.5e-10  Score=100.06  Aligned_cols=246  Identities=13%  Similarity=0.097  Sum_probs=158.0

Q ss_pred             CCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226          131 KTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD  207 (434)
Q Consensus       131 ~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (434)
                      +....+.|..+||   .+++|...-.|++||+..-.....-.                      -....|.-.-++.|-.
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh----------------------lDae~V~feiLsDD~S  107 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH----------------------LDAEVVDFEILSDDYS  107 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec----------------------ccccceeEEEeccchh
Confidence            5677888999998   56677778999999986432111110                      0122344444444544


Q ss_pred             EEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCe
Q 046226          208 TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV  286 (434)
Q Consensus       208 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  286 (434)
                      .++--..|.+|-+..-- |.- ..++. ...-.+++++.-. -|+.++....|.-+++.      ....+..+....+.+
T Consensus       108 K~v~L~~DR~IefHak~-G~h-y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLE------qGrfL~P~~~~~~~l  178 (703)
T KOG2321|consen  108 KSVFLQNDRTIEFHAKY-GRH-YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE------QGRFLNPFETDSGEL  178 (703)
T ss_pred             hheEeecCceeeehhhc-Cee-eeeec-CcCCccccccCCCccEEEeecCcceEEEEcc------ccccccccccccccc
Confidence            45555557777665432 211 11111 1123456666444 45555555667777776      455566666667899


Q ss_pred             EEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc--cCcccCcc-----cceEEEEeeC--CEEEEecCCCcEEEEecc
Q 046226          287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY--GGALQGHT-----HAVMCLASVA--NYVISGSADSTSRVWARE  357 (434)
Q Consensus       287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~-----~~v~~~~~~~--~~l~s~~~dg~i~iwd~~  357 (434)
                      +++.+++-..+|++|+.+|.|..||.+.......+  ......|.     ..|+++.|++  -.+++|+.+|.+.|||++
T Consensus       179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             eeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence            99999999999999999999999998765443322  12222333     3489999964  489999999999999999


Q ss_pred             CCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          358 QDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       358 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      ...  ..+..-.+..-+|..+.|.+..       ++..|+|.. ...++|||-.+++...
T Consensus       259 a~~--pl~~kdh~~e~pi~~l~~~~~~-------~q~~v~S~D-k~~~kiWd~~~Gk~~a  308 (703)
T KOG2321|consen  259 ASK--PLLVKDHGYELPIKKLDWQDTD-------QQNKVVSMD-KRILKIWDECTGKPMA  308 (703)
T ss_pred             cCC--ceeecccCCccceeeecccccC-------CCceEEecc-hHHhhhcccccCCcee
Confidence            863  2222333345578889887652       144566653 5689999999988753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=9.2e-10  Score=100.68  Aligned_cols=281  Identities=10%  Similarity=0.060  Sum_probs=182.9

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc---------------eeEeeccCCCccEEEEEEeCC--EEEEEEcC
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF---------------TECGRLKAKTSMVVAMEVSHD--RVYAAYGD  151 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d  151 (434)
                      ......|++|  ..+++|+|+.||.++|-.+.+.               ..-+++.+|...|.-+.|+.+  .|-+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            4567889999  7899999999999999876431               123457889999999999986  67777779


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  231 (434)
                      |.|.||-+-.+.....+.-                    ....+.|.+++|+.||..+.....||.|.+=.++..+ +.-
T Consensus        93 GlIiVWmlykgsW~EEMiN--------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-Iwg  151 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMIN--------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWG  151 (1189)
T ss_pred             ceEEEEeeecccHHHHHhh--------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecc
Confidence            9999998766554433310                    1255679999999999999999999999887775433 222


Q ss_pred             cccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccC-----cceeEEEEEecccccCeEEEEEe--------cCCCE
Q 046226          232 IQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSE-----NQLHTLILTLTAKYSPVKTLTLT--------LDDGL  297 (434)
Q Consensus       232 ~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~  297 (434)
                      -.........+.|++|. .++.+-.+|.+.++|....-.     .........+......+..+.|.        |+...
T Consensus       152 KeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~  231 (1189)
T KOG2041|consen  152 KELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR  231 (1189)
T ss_pred             hhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE
Confidence            11122234578899998 777778889999998641000     00001111111122235556653        47788


Q ss_pred             EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC---------cEEEEeccCCCceeeEE
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS---------TSRVWAREQDGRHTMLA  366 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~  366 (434)
                      |+++...|.+.|-.-.....+...     ...-.+....|+  |..|+.++.|.         .|.+|..-.    ..+.
T Consensus       232 lavcy~nGr~QiMR~eND~~Pvv~-----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G----~i~g  302 (1189)
T KOG2041|consen  232 LAVCYANGRMQIMRSENDPEPVVV-----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG----HIVG  302 (1189)
T ss_pred             EEEEEcCceehhhhhcCCCCCeEE-----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch----hheE
Confidence            999999999888753322222111     122356666775  66888877643         455554432    5667


Q ss_pred             EeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       367 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      +++.....|++++|--.         |-.++.+ .|+.|++=+++
T Consensus       303 tlkvpg~~It~lsWEg~---------gLriA~A-vdsfiyfanIR  337 (1189)
T KOG2041|consen  303 TLKVPGSCITGLSWEGT---------GLRIAIA-VDSFIYFANIR  337 (1189)
T ss_pred             EEecCCceeeeeEEcCC---------ceEEEEE-ecceEEEEeec
Confidence            77777778888888655         3333333 35555554444

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.30  E-value=6.9e-10  Score=99.33  Aligned_cols=201  Identities=16%  Similarity=0.196  Sum_probs=140.2

Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE----ecCCCEEEEEecCCcEE
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI----NVSDDTLYSASLDKTIK  219 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l~s~~~dg~i~  219 (434)
                      +++....||.+++|+...++....+.... ...+.+......  -..........++.+    +.+...++-|...|.|.
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-~~s~t~~~~~w~--L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIA-SLSGTCTYTKWG--LSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccch-hccCcceeEEEE--EEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            78888899999999998776544442111 011111111110  000000000111111    12345678888999999


Q ss_pred             EEEcCCCeeEEEcc--cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC
Q 046226          220 VWRIRDSKCIETIQ--AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG  296 (434)
Q Consensus       220 vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  296 (434)
                      +|++..++.-..+.  .|.+.|.++.++.+- .|.+++.|+.+..|+..      ....+.........+.+++++||+.
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~------~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK------EKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc------cceeeeeeccCCCccceEEEcCCCC
Confidence            99999999887776  588999999988776 99999999999999876      5666777777888899999999999


Q ss_pred             EEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-------CCEEEE-ecCCCcEEEEeccCC
Q 046226          297 LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-------ANYVIS-GSADSTSRVWAREQD  359 (434)
Q Consensus       297 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~s-~~~dg~i~iwd~~~~  359 (434)
                      .+++++  +.|++||+.+.    +....+.+|.++|.+++|-       |.++++ ...+..+.+|-++..
T Consensus       158 ~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             EEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            999886  68999998644    3445678999999999883       455554 445667888877763

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.30  E-value=1.3e-09  Score=101.77  Aligned_cols=210  Identities=11%  Similarity=0.013  Sum_probs=127.8

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcC---CeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD---GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG  186 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
                      ..|.++|..... ...+..+...+...+|+|+  .++.++.+   ..|++||+.++......                  
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~------------------  230 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA------------------  230 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee------------------
Confidence            368888875433 4445556667889999998  56655543   57999998765332111                  


Q ss_pred             cccccCcCCCeEEEEEecCCCEEEE-EecCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC-CC--eE
Q 046226          187 KDKMMKHMGPITSIAINVSDDTLYS-ASLDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD-DA--TV  259 (434)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg--~i  259 (434)
                           .+...+.+++|+||++.|+. .+.++  .|++||+.+++. ..+..+........|++++ .|+..+. ++  .|
T Consensus       231 -----~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~i  304 (417)
T TIGR02800       231 -----SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQI  304 (417)
T ss_pred             -----cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceE
Confidence                 24455667899999987764 44444  599999987754 3444455555677899998 6655443 44  46


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC---eEEEEEcCcccccccccCcccCcccceEEEE
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG---YIHYWHKGWFSAQLQYGGALQGHTHAVMCLA  336 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  336 (434)
                      .++|+.  . ...    ..+..+........|+|++++++.+..++   .|.+||+......  .... ..+. .-..++
T Consensus       305 y~~d~~--~-~~~----~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~--~l~~-~~~~-~~p~~s  373 (417)
T TIGR02800       305 YMMDAD--G-GEV----RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER--VLTD-TGLD-ESPSFA  373 (417)
T ss_pred             EEEECC--C-CCE----EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE--EccC-CCCC-CCceEC
Confidence            666654  1 111    12222344567789999999999888776   7888888653221  1111 1111 112455


Q ss_pred             eeCCEEEEecCCC---cEEEEecc
Q 046226          337 SVANYVISGSADS---TSRVWARE  357 (434)
Q Consensus       337 ~~~~~l~s~~~dg---~i~iwd~~  357 (434)
                      .++++|+..+.++   .+++.+..
T Consensus       374 pdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       374 PNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CCCCEEEEEEeCCCcEEEEEEECC
Confidence            5677777666544   34454543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.29  E-value=1.2e-08  Score=101.91  Aligned_cols=303  Identities=14%  Similarity=0.121  Sum_probs=182.3

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEe----cCCCc--eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIW----KQPEF--TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST  160 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iw----d~~~~--~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~  160 (434)
                      ..+.|.++.+  +...++.+..+|.|.+.    +..+.  +.+..   -...|.+++|+||  .|+.++.++++.+.+-.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~  150 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMTRD  150 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence            4567999998  88888899999999998    54432  33333   3567999999998  78888889988887532


Q ss_pred             CCCCceeeEeeeccC-----------------CCCceeE-------EE---eccccccCcCCCeEEEEEecCCCEEEEEe
Q 046226          161 WDNGVKHVKLATIPK-----------------TGGAVRN-------LI---VGKDKMMKHMGPITSIAINVSDDTLYSAS  213 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~-----------------~~~~~~~-------~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  213 (434)
                       -+.+....+.....                 .|...+.       ..   .....+. +...-..|+|-.||.+|++.+
T Consensus       151 -fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss  228 (928)
T PF04762_consen  151 -FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS  228 (928)
T ss_pred             -ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence             22222221111000                 0000000       00   0011112 445667899999999999876


Q ss_pred             c---C---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC---CCeEEEEecccccCcceeEEEEEecccc
Q 046226          214 L---D---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD---DATVRVWRRYFYSENQLHTLILTLTAKY  283 (434)
Q Consensus       214 ~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~  283 (434)
                      .   +   ..|+||+-+ |....+-..-.+--.+++|.|.| ++++.-.   ...|.+|..+   +..-...........
T Consensus       229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN---GLrhgeF~l~~~~~~  304 (928)
T PF04762_consen  229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN---GLRHGEFTLRFDPEE  304 (928)
T ss_pred             EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC---CcEeeeEecCCCCCC
Confidence            4   2   479999965 66555544444455688999999 5655543   3567777644   223333333333456


Q ss_pred             cCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC---CEEEEecCCCcEEEEecc---
Q 046226          284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA---NYVISGSADSTSRVWARE---  357 (434)
Q Consensus       284 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~---  357 (434)
                      ..|..+.|++++..|+....|. |.+|-.....--.+....+.. ...+..+.|+.   ..|...+.+|.+..++..   
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v  382 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV  382 (928)
T ss_pred             ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence            6899999999999999987665 999986543211111111111 12233366653   355555555555444321   


Q ss_pred             -CCC-----ceeeEEEee-----------------------ccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226          358 -QDG-----RHTMLAVLV-----------------------GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       358 -~~~-----~~~~~~~~~-----------------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw  408 (434)
                       .+.     ..-.+..+.                       .-..+|.+++|+++         +..+++-..||.|.+|
T Consensus       383 ~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~---------~~~~avl~~d~~l~~~  453 (928)
T PF04762_consen  383 SRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS---------NSRFAVLTSDGSLSIY  453 (928)
T ss_pred             EecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC---------CCeEEEEECCCCEEEE
Confidence             110     000111111                       12467899999988         5669999999999999


Q ss_pred             ecCCC
Q 046226          409 RVTRP  413 (434)
Q Consensus       409 ~~~~~  413 (434)
                      .....
T Consensus       454 ~~~~~  458 (928)
T PF04762_consen  454 EWDLK  458 (928)
T ss_pred             EecCC
Confidence            96544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.29  E-value=4.7e-10  Score=91.82  Aligned_cols=189  Identities=13%  Similarity=0.104  Sum_probs=127.7

Q ss_pred             CCcEEEEEcCCCeeEE--Ec-ccCccCeEEEEEcC---CC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCe
Q 046226          215 DKTIKVWRIRDSKCIE--TI-QAHSEPINALVVAD---DG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV  286 (434)
Q Consensus       215 dg~i~vwd~~~~~~~~--~~-~~~~~~v~~~~~~~---~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  286 (434)
                      .|.+.+|++...+.+.  .+ ......+..+.|.-   ++  .++-+..+|.|.++.............+..........
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            4677888877655433  11 11234556666652   22  56777788999998755111111111111111111135


Q ss_pred             EEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCcee
Q 046226          287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHT  363 (434)
Q Consensus       287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~  363 (434)
                      .++.|++.+..++++..+|.+.+-+..  ....+..+..+.|....+...|+   ++.+.+|++|+.+..||++..+. .
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~  201 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYET--EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-F  201 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecc--eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-e
Confidence            578889999999999999999955533  23344445788999998888885   67999999999999999994431 2


Q ss_pred             eEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          364 MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       364 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      .....+-|...|.++.-+|..        +.+|+||+.|-.|++||.++-.
T Consensus       202 i~~n~kvH~~GV~SI~ss~~~--------~~~I~TGsYDe~i~~~DtRnm~  244 (339)
T KOG0280|consen  202 IWHNSKVHTSGVVSIYSSPPK--------PTYIATGSYDECIRVLDTRNMG  244 (339)
T ss_pred             eeecceeeecceEEEecCCCC--------CceEEEeccccceeeeehhccc
Confidence            333366789999999888765        8899999999999999998543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.26  E-value=1.9e-10  Score=94.78  Aligned_cols=263  Identities=15%  Similarity=0.185  Sum_probs=164.2

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce-----eEeeccCCC------------ccEEEEEEeCC----EEEE
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT-----ECGRLKAKT------------SMVVAMEVSHD----RVYA  147 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~l~~~~~----~l~~  147 (434)
                      ..+.|+++.|  .|.+|+||...|.|.+|.-+...     ....+++|.            ..|..+.|..+    .++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3567999999  68999999999999999754422     223355554            35778888654    6788


Q ss_pred             EEcCCeEEEeecCCCCCce--eeEee---e--------------ccCCCCceeEEEeccc--cccCcCCCeEEEEEecCC
Q 046226          148 AYGDGKIRVWRSTWDNGVK--HVKLA---T--------------IPKTGGAVRNLIVGKD--KMMKHMGPITSIAINVSD  206 (434)
Q Consensus       148 ~s~dg~i~vwd~~~~~~~~--~~~~~---~--------------~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~  206 (434)
                      .+.|.+|++|.+.......  .-.+.   .              .+.....-..+.....  ....|.--|.++.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            8899999999886542110  00000   0              0000000011111111  224688889999999998


Q ss_pred             CEEEEEecCCcEEEEEcCCCe---eEEEcccC-----ccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeE--
Q 046226          207 DTLYSASLDKTIKVWRIRDSK---CIETIQAH-----SEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHT--  274 (434)
Q Consensus       207 ~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~-----~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~--  274 (434)
                      ..++++. |=.|.+|+++-..   .+..++.|     ..-|++..|+|..  .+.-.+..|.|++-|++...--....  
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            8888886 7789999986432   22333333     3467888999877  77777888999999998211100000  


Q ss_pred             --------EEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc------------cce--
Q 046226          275 --------LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT------------HAV--  332 (434)
Q Consensus       275 --------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------------~~v--  332 (434)
                              -...+.+....|..+.|+++|+++++-+. -+|+|||++.........   .-|.            ..|  
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi---~~h~~l~~~l~d~YEnDaifd  339 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI---PMHCDLMDELNDVYENDAIFD  339 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee---chHHHHHHHHHhhhhccceee
Confidence                    01112233456888999999999887654 579999998665544322   1121            122  


Q ss_pred             -EEEEeeC--CEEEEecCCCcEEEEeccC
Q 046226          333 -MCLASVA--NYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       333 -~~~~~~~--~~l~s~~~dg~i~iwd~~~  358 (434)
                       .-+.++|  ..+++|+..+..-+|-..+
T Consensus       340 kFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         340 KFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             eEEEEecCCcccccccccccceeeecccc
Confidence             2344554  4788888888777776443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=4.1e-09  Score=98.50  Aligned_cols=230  Identities=13%  Similarity=0.007  Sum_probs=134.5

Q ss_pred             eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcC---CeEEEeecCCCCCceeeEeeeccCCCCceeEEEecc
Q 046226          113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD---GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK  187 (434)
Q Consensus       113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
                      .|.++|...+. ...+..+...+....|+|+  .|+..+.+   ..|.+||+.+++.....                   
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-------------------  239 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-------------------  239 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-------------------
Confidence            47788876544 3445556778899999998  56655543   46888888765332111                   


Q ss_pred             ccccCcCCCeEEEEEecCCCEEEE-EecCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCC--eEE
Q 046226          188 DKMMKHMGPITSIAINVSDDTLYS-ASLDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDA--TVR  260 (434)
Q Consensus       188 ~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i~  260 (434)
                          ...+.+....|+|||+.|+. ...+|  .|++||+.+++.. .+..+........|+|++ .++..+ .+|  .|.
T Consensus       240 ----~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy  314 (430)
T PRK00178        240 ----NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIY  314 (430)
T ss_pred             ----CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence                12233456899999998874 44444  6888999887643 454455566778999999 554444 444  455


Q ss_pred             EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC-C--eEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226          261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-G--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS  337 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  337 (434)
                      ++|+.  .+ .....  ....  .......|+|+|++|+....+ +  .|.+||+.......  .... .. ..-..++.
T Consensus       315 ~~d~~--~g-~~~~l--t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt~~-~~-~~~p~~sp  383 (430)
T PRK00178        315 KVNVN--GG-RAERV--TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LTDT-SL-DESPSVAP  383 (430)
T ss_pred             EEECC--CC-CEEEe--ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--ccCC-CC-CCCceECC
Confidence            66654  11 11111  1111  223456899999998877643 3  57888876543221  1111 11 11124566


Q ss_pred             eCCEEEEecCC-C--cEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          338 VANYVISGSAD-S--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       338 ~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      +|+.++..+.+ |  .|.++++...    ....+..+.+.+...+|+|
T Consensus       384 dg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        384 NGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             CCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCCCccCC
Confidence            77766655443 3  4666666532    2233444555666677765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=1.9e-09  Score=99.48  Aligned_cols=322  Identities=12%  Similarity=0.069  Sum_probs=212.7

Q ss_pred             ccceeeeEEEeeccccEEEEEE--------cC------CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--------GN------GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-  143 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--------~~------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-  143 (434)
                      ..+.+.++++..|...|+.+.|        ..      -+||++...|.|.+||...+..+..+..|..++..++|-+. 
T Consensus        42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r  121 (1062)
T KOG1912|consen   42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR  121 (1062)
T ss_pred             hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc
Confidence            4567778888899999999999        11      26788888999999999999999999999999999999653 


Q ss_pred             -----EEEEEEcCCeEEEeecCCCCCceeeEeee----------cc-------CCCCc---------------eeEEEec
Q 046226          144 -----RVYAAYGDGKIRVWRSTWDNGVKHVKLAT----------IP-------KTGGA---------------VRNLIVG  186 (434)
Q Consensus       144 -----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~----------~~-------~~~~~---------------~~~~~~~  186 (434)
                           .|++-.....+.+|+..+++.........          +.       ..++.               ...+...
T Consensus       122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~  201 (1062)
T KOG1912|consen  122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT  201 (1062)
T ss_pred             CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence                 57777788899999988887654432110          00       00000               0000000


Q ss_pred             cc--cc----------cCcCC---------CeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEc
Q 046226          187 KD--KM----------MKHMG---------PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA  245 (434)
Q Consensus       187 ~~--~~----------~~~~~---------~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  245 (434)
                      .+  ..          ..+..         ....++|+|.-+.++-......+.++|++-..++....-..+.+.-+.+-
T Consensus       202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl  281 (1062)
T KOG1912|consen  202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL  281 (1062)
T ss_pred             cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence            00  00          00000         01234567766555555567889999999888888887777777788888


Q ss_pred             CCC---eEEEEeCCCeEEEEecccccCccee-------------EEEE--------------------------------
Q 046226          246 DDG---VLYSASDDATVRVWRRYFYSENQLH-------------TLIL--------------------------------  277 (434)
Q Consensus       246 ~~~---~l~s~~~dg~i~iwd~~~~~~~~~~-------------~~~~--------------------------------  277 (434)
                      |+.   .|++.-.||.+.+|-.+........             ..+.                                
T Consensus       282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w  361 (1062)
T KOG1912|consen  282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW  361 (1062)
T ss_pred             cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence            877   7999999999999965421100000             0000                                


Q ss_pred             ----------------------------------------EecccccCeEEEEEec-----------CC-------CEEE
Q 046226          278 ----------------------------------------TLTAKYSPVKTLTLTL-----------DD-------GLLY  299 (434)
Q Consensus       278 ----------------------------------------~~~~~~~~v~~~~~~~-----------~~-------~~l~  299 (434)
                                                              ...+|.....+....|           .+       .+++
T Consensus       362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA  441 (1062)
T KOG1912|consen  362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA  441 (1062)
T ss_pred             hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence                                                    0001222222222211           11       2688


Q ss_pred             EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-EEEEec----------CCCcEEEEeccCCCceeeEEE-
Q 046226          300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-YVISGS----------ADSTSRVWAREQDGRHTMLAV-  367 (434)
Q Consensus       300 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~-  367 (434)
                      .|+..|+|.++|+.+.    .....+..|...|.++.|-|+ .|++.+          .-+.+.+-|+++|-. +.++. 
T Consensus       442 vGT~sGTV~vvdvst~----~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls-k~fR~l  516 (1062)
T KOG1912|consen  442 VGTNSGTVDVVDVSTN----AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS-KRFRGL  516 (1062)
T ss_pred             eecCCceEEEEEecch----hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccc-cccccC
Confidence            9999999999998643    333466789999999999876 344333          334678889998743 23332 


Q ss_pred             eeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          368 LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       368 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      -+....+|+.+..+..         ++||+..-.|.-+.+||+++..
T Consensus       517 ~~~despI~~irvS~~---------~~yLai~Fr~~plEiwd~kt~~  554 (1062)
T KOG1912|consen  517 QKPDESPIRAIRVSSS---------GRYLAILFRREPLEIWDLKTLR  554 (1062)
T ss_pred             CCCCcCcceeeeeccc---------CceEEEEecccchHHHhhccch
Confidence            3345678999999887         9999999999999999997543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=4.5e-09  Score=93.65  Aligned_cols=269  Identities=10%  Similarity=0.064  Sum_probs=166.8

Q ss_pred             cEEEEEE--cCCEEEEE-----eCC-----CeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecC
Q 046226           94 QILCIAV--GNGFIYTG-----SDS-----NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRST  160 (434)
Q Consensus        94 ~v~~~~~--~~~~l~tg-----~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~  160 (434)
                      .++++.|  -|++|.|=     ..+     -.+.+|+++++.....+......-++..|+.| .+++=-..+.+.+|++.
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~  154 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLG  154 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecC
Confidence            5677777  67777652     112     35779999986665555443333368889887 44444447889999987


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC--CEEEE-----EecCCcEEEEEcCCCeeEEEcc
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD--DTLYS-----ASLDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s-----~~~dg~i~vwd~~~~~~~~~~~  233 (434)
                      ..+.+...                       -|...|..+.++|.+  ..+++     .+.-+.|+||.......-..+.
T Consensus       155 ~f~~~~~k-----------------------l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a  211 (566)
T KOG2315|consen  155 SFKTIQHK-----------------------LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA  211 (566)
T ss_pred             Cccceeee-----------------------eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh
Confidence            64333222                       277789999999873  23332     3445689999876322111110


Q ss_pred             ---cCccCeEEEEEcCCC--eEEEE--eCC---------CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226          234 ---AHSEPINALVVADDG--VLYSA--SDD---------ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL  297 (434)
Q Consensus       234 ---~~~~~v~~~~~~~~~--~l~s~--~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  297 (434)
                         -....-..+.|++.|  +|+.+  .-|         ..+++.++.       ......--...++|.++.|+++++-
T Consensus       212 ~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-------g~s~~V~L~k~GPVhdv~W~~s~~E  284 (566)
T KOG2315|consen  212 NKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-------GESVSVPLLKEGPVHDVTWSPSGRE  284 (566)
T ss_pred             hccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-------CceEEEecCCCCCceEEEECCCCCE
Confidence               011223357788766  33333  223         356666544       1111222234689999999999976


Q ss_pred             EEE--EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecC---CCcEEEEeccCCCceeeEEEeec
Q 046226          298 LYG--GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSA---DSTSRVWAREQDGRHTMLAVLVG  370 (434)
Q Consensus       298 l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~  370 (434)
                      +++  |-.-..+.|||++..   ..+  .  -..++-.++-|+  |++++.++-   -|.|.|||+.+.   +++..+..
T Consensus       285 F~VvyGfMPAkvtifnlr~~---~v~--d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a  354 (566)
T KOG2315|consen  285 FAVVYGFMPAKVTIFNLRGK---PVF--D--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKA  354 (566)
T ss_pred             EEEEEecccceEEEEcCCCC---EeE--e--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhcccccc
Confidence            655  556778999998521   111  1  223344555554  777777665   479999999985   67776655


Q ss_pred             cccceeEEEEeecccCCCCCCcccEEEEee------cCCeEEEEecCCC
Q 046226          371 HRGPIRCAIAFLGRFGEETEDEYCTICTGS------LDGVLKMWRVTRP  413 (434)
Q Consensus       371 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~------~Dg~v~iw~~~~~  413 (434)
                      -..  +-..|+|+         |++|+|+.      .|+.++||++.-.
T Consensus       355 ~~t--t~~eW~Pd---------Ge~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  355 ANT--TVFEWSPD---------GEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             CCc--eEEEEcCC---------CcEEEEEeccccEEecCCeEEEEecCc
Confidence            443  44899999         99998876      5889999998743

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=4.6e-09  Score=97.91  Aligned_cols=230  Identities=14%  Similarity=-0.008  Sum_probs=130.0

Q ss_pred             eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc-CC--eEEEeecCCCCCceeeEeeeccCCCCceeEEEecc
Q 046226          113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG-DG--KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK  187 (434)
Q Consensus       113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
                      .|.++|..... ...+..+...+.+..|+||  .|+..+. ++  .|.+||+.+++.....                   
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt-------------------  258 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT-------------------  258 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec-------------------
Confidence            66677765443 3345556678889999998  5555543 33  5788887655321111                   


Q ss_pred             ccccCcCCCeEEEEEecCCCEEEE-EecCCc--EEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEE-EeCCCe--EE
Q 046226          188 DKMMKHMGPITSIAINVSDDTLYS-ASLDKT--IKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYS-ASDDAT--VR  260 (434)
Q Consensus       188 ~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s-~~~dg~--i~  260 (434)
                          ...+.....+|+|||+.|+. ...+|.  |+++|+.+++. ..+..+........|+||+ .|+. ...++.  |.
T Consensus       259 ----~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy  333 (448)
T PRK04792        259 ----SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIY  333 (448)
T ss_pred             ----CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence                11222346789999998875 455664  88889887764 4444455566788999999 5544 444454  44


Q ss_pred             EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226          261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS  337 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  337 (434)
                      ++|+.  .. .....  ...+  ......+|+|||++|+..+. ++  .|.++|+......  ....  .....-..++.
T Consensus       334 ~~dl~--~g-~~~~L--t~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~--~lt~--~~~d~~ps~sp  402 (448)
T PRK04792        334 RVNLA--SG-KVSRL--TFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ--VLTS--TRLDESPSVAP  402 (448)
T ss_pred             EEECC--CC-CEEEE--ecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE--EccC--CCCCCCceECC
Confidence            44543  11 11111  1122  22345689999998877654 34  4555666543321  1111  11111124566


Q ss_pred             eCCEEEEec-CCC--cEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          338 VANYVISGS-ADS--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       338 ~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      +|+.|+..+ .++  .+++++.+.    .....+..+.+.+...+|+|
T Consensus       403 dG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        403 NGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCCccCC
Confidence            777665544 344  366677643    33444555556667777776

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.24  E-value=1e-07  Score=80.97  Aligned_cols=273  Identities=9%  Similarity=0.104  Sum_probs=172.1

Q ss_pred             CCeEEEecCCCc--ee-EeeccCCCccEEEEEEeCC--EEEEEEc---CCeEEEeecCCC-CCceeeEeeeccCCCCcee
Q 046226          111 SNVIRIWKQPEF--TE-CGRLKAKTSMVVAMEVSHD--RVYAAYG---DGKIRVWRSTWD-NGVKHVKLATIPKTGGAVR  181 (434)
Q Consensus       111 dg~i~iwd~~~~--~~-~~~~~~~~~~v~~l~~~~~--~l~~~s~---dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~  181 (434)
                      +.-|++|++.+.  +. ...+-.+.+..+-|+|+++  .|+++..   +|.|..|.++.. .....+....         
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~---------   85 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT---------   85 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc---------
Confidence            468999998742  21 1122345667888999997  5777755   577888887643 2222221100         


Q ss_pred             EEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCC-CeeEE--EcccCccC----------eEEEEEcCC
Q 046226          182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRD-SKCIE--TIQAHSEP----------INALVVADD  247 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~  247 (434)
                                ....+-..+++++++++++++.. .|.|.++-++. |....  .+..|.+.          +....+.|+
T Consensus        86 ----------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~  155 (346)
T COG2706          86 ----------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD  155 (346)
T ss_pred             ----------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence                      12223388999999999998865 57899999865 43211  12224444          888999999


Q ss_pred             C-eEEEEe-CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCcccccccccCc
Q 046226          248 G-VLYSAS-DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQLQYGGA  324 (434)
Q Consensus       248 ~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~  324 (434)
                      + +|++.. .--.|.+|++..  +.-........ ......+.|.|+|++++.++.++ +++|.+|.........+..+.
T Consensus       156 ~~~l~v~DLG~Dri~~y~~~d--g~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~  232 (346)
T COG2706         156 GRYLVVPDLGTDRIFLYDLDD--GKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT  232 (346)
T ss_pred             CCEEEEeecCCceEEEEEccc--Ccccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence            9 666554 335699999872  21111111222 44567889999999999887766 899999998764333322211


Q ss_pred             -------ccCcc-cceEEEEeeCCEEEEecC-CCcEEEEeccCCC-ceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          325 -------LQGHT-HAVMCLASVANYVISGSA-DSTSRVWAREQDG-RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       325 -------~~~~~-~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                             +.+.. ..-..+..+|++|.++.. ...|-+|.+.... ....+.....+....+...+.++         ++
T Consensus       233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~---------g~  303 (346)
T COG2706         233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS---------GR  303 (346)
T ss_pred             eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC---------CC
Confidence                   11111 122334456888887754 3478888887653 34444455555555788888888         88


Q ss_pred             EEEEeecC-CeEEEEecCCCC
Q 046226          395 TICTGSLD-GVLKMWRVTRPK  414 (434)
Q Consensus       395 ~l~s~~~D-g~v~iw~~~~~~  414 (434)
                      +|+.+..| ..|.+|..+...
T Consensus       304 ~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         304 FLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEEEccCCCcEEEEEEcCCC
Confidence            88888865 469999887544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.24  E-value=2.3e-10  Score=92.02  Aligned_cols=235  Identities=13%  Similarity=0.203  Sum_probs=142.6

Q ss_pred             EEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccC--CCccEEEEEE------------eCCEEEEEEcCCeEEEeec
Q 046226           95 ILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKA--KTSMVVAMEV------------SHDRVYAAYGDGKIRVWRS  159 (434)
Q Consensus        95 v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~------------~~~~l~~~s~dg~i~vwd~  159 (434)
                      |+.+.+ ....|+++..++.+.....-.+.+....+.  ..++..+++.            ..+.++++..||.+.+.+.
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            666777 677888888887777666544433322211  1122233332            2237899999999999987


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-----CCcEEEEEcCCCeeEEEccc
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-----DKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~  234 (434)
                      +........ +..                   .|.+. .+.++...++.+.++..     -+..+.|+++..+.+..-..
T Consensus       119 ~~~~~~~~~-i~~-------------------~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~  177 (319)
T KOG4714|consen  119 DKDLALMSR-IPS-------------------IHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK  177 (319)
T ss_pred             hHHHhhhhh-ccc-------------------ccccc-cccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence            642111100 000                   01111 11122233444444321     23466677654433222222


Q ss_pred             CccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEE
Q 046226          235 HSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWH  311 (434)
Q Consensus       235 ~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d  311 (434)
                      ....|.+++-+|..  .+++|+.||.+-+||.+     ....+...+..|+.++..+.|+| ++..|+++++||.+-.||
T Consensus       178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~r-----n~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDAR-----NVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             ccccchhhhCCcccccEEEEecCCCeEEEEEcc-----cccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            33458899988876  88899999999999998     22344556778999999999999 678999999999999999


Q ss_pred             cCccccc--------------------ccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEe
Q 046226          312 KGWFSAQ--------------------LQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWA  355 (434)
Q Consensus       312 ~~~~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd  355 (434)
                      ..+.-..                    .+....+......|..+...|..|++|++-+.|++++
T Consensus       253 as~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  253 ASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             CCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            7631110                    0111122233345566666788999999888888875

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.23  E-value=4.6e-11  Score=119.15  Aligned_cols=190  Identities=13%  Similarity=0.185  Sum_probs=148.5

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCc
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      +-..|.++.=+|...+.++|+.||.|++|.-..++.+..++. ....|+.+.|+.+| .+..+..||.+.+|...     
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----- 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----- 2281 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-----
Confidence            567788898899999999999999999999988887777653 23789999999888 99999999999999754     


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEc---CCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEe
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC---TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISG  345 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~  345 (434)
                        .++....+.|......+.|-.  ..+++++   .++.+.+||....... .+..  ..|.+.++++++-++  .|++|
T Consensus      2282 --pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2282 --PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred             --CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceee--eecCCCceEEEEcCcceEEEec
Confidence              456667778888888888865  5566653   4789999996433222 2222  578888888888754  89999


Q ss_pred             cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          346 SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      +.+|.|++||++..   +....++.         +. .         ..++++|+..|.++||++.....+
T Consensus      2355 gr~G~v~l~D~rqr---ql~h~~~~---------~~-~---------~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQR---QLRHTFQA---------LD-T---------REYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             CCcCcEEEeehHHH---HHHHHhhh---------hh-h---------hheeeccCcccceEEEEccccchh
Confidence            99999999999875   44444433         22 2         678999999999999999876433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.22  E-value=5.6e-09  Score=97.48  Aligned_cols=193  Identities=16%  Similarity=0.050  Sum_probs=117.6

Q ss_pred             CcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCC--eEEEEec
Q 046226          192 KHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDA--TVRVWRR  264 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg--~i~iwd~  264 (434)
                      .+...+...+|+|++++|+.+..+   ..|++||+.+++... +..+...+.++.|+|++ .|+ +.+.++  .|.+||+
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~  265 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL  265 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence            355678889999999999877644   479999998876533 33355566778999999 454 455444  5778877


Q ss_pred             ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEE--eeC
Q 046226          265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLA--SVA  339 (434)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~  339 (434)
                      ..   ..    ...+..+........|+|+++.|+..+. ++  .|+++|+......     .+..+...+....  .++
T Consensus       266 ~~---~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-----~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       266 DG---KQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-----RLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             CC---CC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----EeecCCCCccCeEECCCC
Confidence            51   11    1122223334456789999998876654 33  5777776533211     1111222333344  457


Q ss_pred             CEEEEecCCC---cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC---eEEEEecC
Q 046226          340 NYVISGSADS---TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG---VLKMWRVT  411 (434)
Q Consensus       340 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg---~v~iw~~~  411 (434)
                      ++++.++.++   .|.+||+.++. ...   +... .......|+|+         +++|+..+.++   .+++.+..
T Consensus       334 ~~i~~~~~~~~~~~i~~~d~~~~~-~~~---l~~~-~~~~~p~~spd---------g~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       334 DLIAFVHREGGGFNIAVMDLDGGG-ERV---LTDT-GLDESPSFAPN---------GRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CEEEEEEccCCceEEEEEeCCCCC-eEE---ccCC-CCCCCceECCC---------CCEEEEEEeCCCcEEEEEEECC
Confidence            7888777665   78889988742 122   2221 22344578888         77777776654   35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=2.6e-07  Score=78.58  Aligned_cols=257  Identities=14%  Similarity=0.143  Sum_probs=156.5

Q ss_pred             ccccEEEEEE--cCCEEEEEeCC---CeEEEecCCC--ceeE--eeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEee
Q 046226           91 KDGQILCIAV--GNGFIYTGSDS---NVIRIWKQPE--FTEC--GRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWR  158 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~d---g~i~iwd~~~--~~~~--~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd  158 (434)
                      +.+..+-|++  +++.|+++..+   |.|..|.+..  |++.  ........+-..++++++  .++++.. .|.|.++-
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence            5556777888  67788887654   6677766553  4432  222222333377888886  5666654 79999998


Q ss_pred             cCCCCCceee-EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEcc---
Q 046226          159 STWDNGVKHV-KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIETIQ---  233 (434)
Q Consensus       159 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~---  233 (434)
                      ++....+... ....-...+.-          ......-+....+.|++++|++.+- --.|.+|++..|+....-.   
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~----------~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v  187 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPH----------ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV  187 (346)
T ss_pred             cccCCccccceeeeecCCCCCC----------ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc
Confidence            8765443332 11110000000          0011122788899999999998753 2369999999776432211   


Q ss_pred             cCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEE---ec---ccccCeEEEEEecCCCEEEEEcC-C
Q 046226          234 AHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILT---LT---AKYSPVKTLTLTLDDGLLYGGCT-D  304 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~---~~~~~v~~~~~~~~~~~l~~~~~-d  304 (434)
                      .....-+.|.|+|++  ..+..--+++|.+|.....  ......+..   +.   ........|.++++|++|+++.. .
T Consensus       188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~  265 (346)
T COG2706         188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH  265 (346)
T ss_pred             CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence            245567899999999  3445557899999988732  112222221   11   12346778999999999998754 3


Q ss_pred             CeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCC-CcEEEEeccCC
Q 046226          305 GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSAD-STSRVWAREQD  359 (434)
Q Consensus       305 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d-g~i~iwd~~~~  359 (434)
                      ..|.+|.+......+.+......+......+.+  ++++|+++..| ..|.+|.++..
T Consensus       266 dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         266 DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            478888887665555544433333333444444  57888877765 47888877653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.19  E-value=1.9e-10  Score=105.31  Aligned_cols=292  Identities=15%  Similarity=0.199  Sum_probs=182.0

Q ss_pred             cccEEEEEE--cCCEEEEEeCCCeEEEecCCC-ceeEeeccC-CCccEEEEEEeCC----EEEEEEcCCeEEEeecCCCC
Q 046226           92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQPE-FTECGRLKA-KTSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDN  163 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~-~~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~  163 (434)
                      .+.+.++..  .|+-+|.++.-|.. +-|+.. +....-+.. ..-.|-.+.|++.    +-++......-.+|++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            455666666  67778888876644 445544 222222211 1224667778764    44555555566788876432


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINA  241 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~  241 (434)
                      ....             .-      .+.+|...|+.+.|+|.. ..+++++-|..+..||+++. .++..+..-...-..
T Consensus       103 ~~aI-------------ef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asq  163 (1081)
T KOG0309|consen  103 SNAI-------------EF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQ  163 (1081)
T ss_pred             ccce-------------EE------EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCce
Confidence            2111             11      113799999999999865 56889999999999999875 355666555566778


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccc
Q 046226          242 LVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       242 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  319 (434)
                      ++|+-.. .+.+.+....|++||++     ........+.+|...+..++|.. -...+++.+.||+|+.||........
T Consensus       164 Vkwnyk~p~vlasshg~~i~vwd~r-----~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~  238 (1081)
T KOG0309|consen  164 VKWNYKDPNVLASSHGNDIFVWDLR-----KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES  238 (1081)
T ss_pred             eeecccCcchhhhccCCceEEEecc-----CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence            8998655 67777788889999998     33345556666878888888865 33568889999999999986544333


Q ss_pred             cccCcccCcccceEEEEe----eCCEEEEe---------cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeeccc-
Q 046226          320 QYGGALQGHTHAVMCLAS----VANYVISG---------SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRF-  385 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~----~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-  385 (434)
                      +...   ....+|+--.+    .|.++.--         --+.....|+..++  .+++..+.||.+.|....|-...- 
T Consensus       239 ~~~v---tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~--~~pVh~F~GH~D~V~eFlWR~r~e~  313 (1081)
T KOG0309|consen  239 KRTV---TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL--NTPVHTFVGHDDVVLEFLWRKRKEC  313 (1081)
T ss_pred             ceec---cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC--CcceeeecCcchHHHHHhhhhcccc
Confidence            2211   11222221111    11122111         11223334444433  378999999999987766643210 


Q ss_pred             CCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          386 GEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       386 ~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      ..++....-.|+|-+.|..+++|-+.+.
T Consensus       314 ~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  314 DGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             cCCCCccceeEEEeecCCceEeeeccHH
Confidence            1112222558999999999999998753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.19  E-value=5.6e-08  Score=85.14  Aligned_cols=169  Identities=12%  Similarity=0.057  Sum_probs=120.7

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC--CEEEEEEcCC-eEEEeecCCCCCceeeEeeeccCCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH--DRVYAAYGDG-KIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      +|++++..+. |...|.+...+-.+..  +|...|.-..+..  +.++.|..|| .+-|+|..+++..+..         
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---------  398 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---------  398 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---------
Confidence            7888888885 6677766555444432  4556676666544  4889999998 8999998766433322         


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCC
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDD  256 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d  256 (434)
                                    +.-+.|.++..+++|++++++.....|.+.|+++++....-+...+-|+.+.|+|++ +++-+--+
T Consensus       399 --------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~  464 (668)
T COG4946         399 --------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE  464 (668)
T ss_pred             --------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc
Confidence                          467789999999999999999999999999999998766666677899999999999 77766555


Q ss_pred             ----CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226          257 ----ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       257 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  302 (434)
                          ..|+++|+.   +.   + +.......+.=.+=+|.|++++|.--+
T Consensus       465 gy~tq~Iklydm~---~~---K-iy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         465 GYYTQSIKLYDMD---GG---K-IYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ceeeeeEEEEecC---CC---e-EEEecCCcccccCcccCCCCcEEEEEe
Confidence                468999986   11   1 111122222223457888888776543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.18  E-value=4e-08  Score=90.62  Aligned_cols=270  Identities=11%  Similarity=0.063  Sum_probs=164.7

Q ss_pred             EcCCEEEEEeCCCeEEEecCCCceeEeeccCCCc----------cE-EEEEEeCCEEEEEEcCCeEEEeecCCCCCceee
Q 046226          100 VGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS----------MV-VAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHV  168 (434)
Q Consensus       100 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~----------~v-~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~  168 (434)
                      +.++.+++++.+|.|.-+|..+++.+........          .+ ..+....+.++.++.+|.+..+|.++++.....
T Consensus        67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            3677888888899999999999998876543220          11 123455678888999999999999888877766


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCe-----EEEE
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI-----NALV  243 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~  243 (434)
                      .....                  ....++    +  .+..++.+..+|.|..+|.++|+.+..+......+     ..-.
T Consensus       147 ~~~~~------------------~~ssP~----v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~  202 (394)
T PRK11138        147 KVAGE------------------ALSRPV----V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA  202 (394)
T ss_pred             cCCCc------------------eecCCE----E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE
Confidence            42110                  011111    1  24567778889999999999999988876431111     1111


Q ss_pred             EcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEeccccc---CeEEEEEec--CCCEEEEEcCCCeEEEEEcCccccc
Q 046226          244 VADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS---PVKTLTLTL--DDGLLYGGCTDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       244 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  318 (434)
                      .. ++.++.++.+|.+..+|...  +...............   ....+..+|  .+..+++++.+|.+..+|..+.+..
T Consensus       203 v~-~~~v~~~~~~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~  279 (394)
T PRK11138        203 TA-FGGAIVGGDNGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV  279 (394)
T ss_pred             EE-CCEEEEEcCCCEEEEEEccC--ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence            11 34667778888888888762  2222221110000000   001111122  3566777888999999998766554


Q ss_pred             ccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccc-cceeEEEEeecccCCCCCCcccEEE
Q 046226          319 LQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR-GPIRCAIAFLGRFGEETEDEYCTIC  397 (434)
Q Consensus       319 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~  397 (434)
                      .+..  +.    ....+...++.++.++.+|.+..+|..++.   .+-....-. ....+..+.           +.+|+
T Consensus       280 W~~~--~~----~~~~~~~~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v~-----------~g~l~  339 (394)
T PRK11138        280 WKRE--YG----SVNDFAVDGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVLY-----------NGYLV  339 (394)
T ss_pred             Eeec--CC----CccCcEEECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEEE-----------CCEEE
Confidence            4431  11    112345568888888999999999998873   322211101 111222222           45788


Q ss_pred             EeecCCeEEEEecCCCCcc
Q 046226          398 TGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       398 s~~~Dg~v~iw~~~~~~~~  416 (434)
                      .++.||.|...|..+++.+
T Consensus       340 v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        340 VGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             EEeCCCEEEEEECCCCCEE
Confidence            8899999999999888754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.18  E-value=3.8e-08  Score=90.78  Aligned_cols=266  Identities=12%  Similarity=0.083  Sum_probs=162.7

Q ss_pred             EEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226           99 AVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG  178 (434)
Q Consensus        99 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (434)
                      ...++.++.++.+|.+..+|.++++.+.+.+........-....+.++.++.++.+..+|..+++.+.........    
T Consensus       117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~----  192 (394)
T PRK11138        117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS----  192 (394)
T ss_pred             EEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc----
Confidence            3467778888899999999999999988776543322223344568888888999999999988877666421000    


Q ss_pred             ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc-------CeEEEEEc---CCC
Q 046226          179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE-------PINALVVA---DDG  248 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~---~~~  248 (434)
                          +     ...+...++.      .+..++.++.+|.+..+|..+|+.+........       ....+..+   .++
T Consensus       193 ----~-----~~~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~  257 (394)
T PRK11138        193 ----L-----TLRGESAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG  257 (394)
T ss_pred             ----c-----cccCCCCCEE------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC
Confidence                0     0001112221      134566777889999999999987765432110       00111111   145


Q ss_pred             eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226          249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      .++.++.+|.+..+|+.  .+....+..  .    .....+.  ..+..++.++.+|.+..+|..+.+....... . .+
T Consensus       258 ~vy~~~~~g~l~ald~~--tG~~~W~~~--~----~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~-~~  325 (394)
T PRK11138        258 VVYALAYNGNLVALDLR--SGQIVWKRE--Y----GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD-L-LH  325 (394)
T ss_pred             EEEEEEcCCeEEEEECC--CCCEEEeec--C----CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc-c-CC
Confidence            77778889999999887  222222211  1    1111122  2467788888999999999876654433211 1 11


Q ss_pred             ccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE-EEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226          329 THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC-AIAFLGRFGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       329 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                       .........+.+|+.++.||.|++.|..++   +.+...+-....+.+ -.+.           +..|+.++.||.|+.
T Consensus       326 -~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG---~~~~~~~~~~~~~~s~P~~~-----------~~~l~v~t~~G~l~~  390 (394)
T PRK11138        326 -RLLTAPVLYNGYLVVGDSEGYLHWINREDG---RFVAQQKVDSSGFLSEPVVA-----------DDKLLIQARDGTVYA  390 (394)
T ss_pred             -CcccCCEEECCEEEEEeCCCEEEEEECCCC---CEEEEEEcCCCcceeCCEEE-----------CCEEEEEeCCceEEE
Confidence             112223345788899999999999999988   455444333222322 1222           447888899999988


Q ss_pred             Eec
Q 046226          408 WRV  410 (434)
Q Consensus       408 w~~  410 (434)
                      +++
T Consensus       391 ~~~  393 (394)
T PRK11138        391 ITR  393 (394)
T ss_pred             EeC
Confidence            775

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.18  E-value=2e-08  Score=81.37  Aligned_cols=239  Identities=11%  Similarity=-0.071  Sum_probs=150.6

Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEE
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWR  222 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd  222 (434)
                      .|+.|+.-|...+|...+.+.....--                     .|...|+-+.=.. ....+..++.|.++++.+
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd---------------------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~  144 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCD---------------------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMV  144 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeec---------------------ccccchhhhhhhcccccceeeccCCcceeEEE
Confidence            788888999999998875543322210                     1222222111101 123466778888888888


Q ss_pred             cCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226          223 IRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      ++.+..........-.+.++++++++ ++++.+....|..|.+....   ..............-.+..|+.....+|++
T Consensus       145 ~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s---ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~  221 (344)
T KOG4532|consen  145 VSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES---EYIENIYEAPTSDHGFYNSFSENDLQFAVV  221 (344)
T ss_pred             EecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc---ceeeeeEecccCCCceeeeeccCcceEEEE
Confidence            86544322222222338899999999 88888898999999887221   111112333444556778899999999999


Q ss_pred             cCCCeEEEEEcCcccccccc-cCcccCcccceEEEEee-C---CEEEEecCCCcEEEEeccCCCceeeEEEee----ccc
Q 046226          302 CTDGYIHYWHKGWFSAQLQY-GGALQGHTHAVMCLASV-A---NYVISGSADSTSRVWAREQDGRHTMLAVLV----GHR  372 (434)
Q Consensus       302 ~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~-~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h~  372 (434)
                      ..||.+.|||++........ ......|.+.+..+.|+ +   ++|...-.-+.+.+-|+++....+.+....    .|.
T Consensus       222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~  301 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHN  301 (344)
T ss_pred             ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccc
Confidence            99999999999876544433 23445688899888887 2   255555556789999999985444443221    222


Q ss_pred             -cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          373 -GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       373 -~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                       ..|....|+.+         +.-+.+..++ .+.=|++.+..+.
T Consensus       302 tq~ifgt~f~~~---------n~s~~v~~e~-~~ae~ni~srsR~  336 (344)
T KOG4532|consen  302 TQHIFGTNFNNE---------NESNDVKNEL-QGAEYNILSRSRF  336 (344)
T ss_pred             ccccccccccCC---------Ccccccccch-hhheeecccccee
Confidence             33666666655         4555555544 4556777665543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=2.8e-08  Score=92.96  Aligned_cols=196  Identities=16%  Similarity=0.052  Sum_probs=117.0

Q ss_pred             CcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCC--eEEEEec
Q 046226          192 KHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDA--TVRVWRR  264 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg--~i~iwd~  264 (434)
                      .+...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|+| .|+ +...+|  .|.+||+
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            366778999999999998876543   369999998886533 33334455678999999 554 555555  5777787


Q ss_pred             ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEEeeCCE
Q 046226          265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANY  341 (434)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  341 (434)
                      ..   ...    ..+..+........|+|||+.|+..+. +|  .|+++|+....... +  ...+.......++.+|++
T Consensus       275 ~~---~~~----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l--t~~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        275 AS---RQL----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V--TFVGNYNARPRLSADGKT  344 (430)
T ss_pred             CC---CCe----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e--ecCCCCccceEECCCCCE
Confidence            61   111    122333344566789999998776553 33  56667765433211 1  111222222345566777


Q ss_pred             EEEecC-CC--cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-C--eEEEEecCC
Q 046226          342 VISGSA-DS--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-G--VLKMWRVTR  412 (434)
Q Consensus       342 l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-g--~v~iw~~~~  412 (434)
                      |+..+. ++  .|.+||+.++.. ..+..    ........|+|+         |++|+..+.+ |  .|.++++..
T Consensus       345 i~~~~~~~~~~~l~~~dl~tg~~-~~lt~----~~~~~~p~~spd---------g~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        345 LVMVHRQDGNFHVAAQDLQRGSV-RILTD----TSLDESPSVAPN---------GTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             EEEEEccCCceEEEEEECCCCCE-EEccC----CCCCCCceECCC---------CCEEEEEEecCCceEEEEEECCC
Confidence            766554 33  588889887632 22221    112224578887         7777766543 3  466667653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=2.2e-10  Score=101.59  Aligned_cols=277  Identities=13%  Similarity=0.109  Sum_probs=177.1

Q ss_pred             CcccccCCCCCCCCCCCCCccCCCCCCCccccee------------eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEE
Q 046226           50 PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR------------CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIR  115 (434)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~  115 (434)
                      ...+|...+.....-.+...+.++++|++++.|.            |..++..|+.+|..+.|  +.++++  +.||.|.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcce
Confidence            4567777776665666777888899999988765            56778899999999999  555665  4588999


Q ss_pred             EecCCCceeEeecc-----CCCccEEEEEE-eCCE-EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226          116 IWKQPEFTECGRLK-----AKTSMVVAMEV-SHDR-VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD  188 (434)
Q Consensus       116 iwd~~~~~~~~~~~-----~~~~~v~~l~~-~~~~-l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
                      +||.--+..+....     +..+.|.++.- +... ++.++...+|+++|.+..+....+++...+              
T Consensus       808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~--------------  873 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP--------------  873 (1034)
T ss_pred             eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC--------------
Confidence            99987776665332     12233444432 1123 344477999999999988887777664333              


Q ss_pred             cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEE-Eecccc
Q 046226          189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRV-WRRYFY  267 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~i-wd~~~~  267 (434)
                         +.+..+.+++..+.|++++++-.+|+|.+.|.++|+.+..++.-......++--.|..++....|..+.+ |-..  
T Consensus       874 ---~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhal--  948 (1034)
T KOG4190|consen  874 ---GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHAL--  948 (1034)
T ss_pred             ---CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhc--
Confidence               3556789999999999999999999999999999999988876555555555544557777778888888 7432  


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc--cCcccceEEEEee--CCEEE
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL--QGHTHAVMCLASV--ANYVI  343 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~  343 (434)
                          .............+..-+  ..-|.-|+++.....+.+|.-.........+..+  ....+..+++++-  +..++
T Consensus       949 ----dgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afL 1022 (1034)
T KOG4190|consen  949 ----DGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFL 1022 (1034)
T ss_pred             ----CCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhh
Confidence                111111111111111111  1135567777777777887522111111100011  1122344555543  34566


Q ss_pred             EecCCCcEEE
Q 046226          344 SGSADSTSRV  353 (434)
Q Consensus       344 s~~~dg~i~i  353 (434)
                      .|...|.|.+
T Consensus      1023 aGne~G~IaL 1032 (1034)
T KOG4190|consen 1023 AGNEHGAIAL 1032 (1034)
T ss_pred             ccCCCCceee
Confidence            7888887765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=4.8e-09  Score=96.93  Aligned_cols=286  Identities=7%  Similarity=0.025  Sum_probs=183.8

Q ss_pred             EEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--------------EEEEEEcCCeEEEeec
Q 046226           95 ILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--------------RVYAAYGDGKIRVWRS  159 (434)
Q Consensus        95 v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--------------~l~~~s~dg~i~vwd~  159 (434)
                      -.++.| .+.++|-|+. ..|.+-|..+.+.+..+..|...|+.+.|.|.              .++++...|.|.+||.
T Consensus        18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~   96 (1062)
T KOG1912|consen   18 RNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF   96 (1062)
T ss_pred             ccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence            456677 6778888875 57888899999999999999999999999762              3445555799999998


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---C-CEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---D-DTLYSASLDKTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  235 (434)
                      .....+..+.                      .|.+++.+++|-+.   . ..|++-....+|.+|+..+|+.+......
T Consensus        97 ~~~s~~~~l~----------------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys  154 (1062)
T KOG1912|consen   97 VLASVINWLS----------------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS  154 (1062)
T ss_pred             hhhhhhhhhc----------------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence            7665544442                      58889999999763   3 45666677889999999999999988877


Q ss_pred             ccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcc-eeEEEEEeccccc-------------------------CeE
Q 046226          236 SEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQ-LHTLILTLTAKYS-------------------------PVK  287 (434)
Q Consensus       236 ~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~-------------------------~v~  287 (434)
                      .....|+.+.|-.  .+..-+..|.+.+-+.-...... ..+..+....|..                         ...
T Consensus       155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a  234 (1062)
T KOG1912|consen  155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA  234 (1062)
T ss_pred             CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence            7788889998865  66666677777777653211111 1111111111111                         012


Q ss_pred             EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCC-----
Q 046226          288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDG-----  360 (434)
Q Consensus       288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~-----  360 (434)
                      .++|+|.-+.++.......+.++|++-.......  .++.....+..+-+++  +.|++.-.||.+.+|-.+...     
T Consensus       235 ~faf~p~~rn~lfi~~prellv~dle~~~~l~vv--pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~  312 (1062)
T KOG1912|consen  235 QFAFSPHWRNILFITFPRELLVFDLEYECCLAVV--PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK  312 (1062)
T ss_pred             hhhcChhhhceEEEEeccceEEEcchhhceeEEE--EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence            3567886666666666778999998643322221  1222223445555554  489999999999999766521     


Q ss_pred             -----------ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          361 -----------RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       361 -----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                                 +..++...+  .-.+...+..|..        ...++.--.+|.+.+|++.+++.
T Consensus       313 ~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~--------~sa~avl~s~g~~~~w~l~~~ri  368 (1062)
T KOG1912|consen  313 PNASLSMDLGEQVHVVRPME--EFRPVIGASCPST--------PSALAVLYSSGDSTFWQLSNGRI  368 (1062)
T ss_pred             cchhhccccccceEEEeech--hcccceeecCCCC--------hhhhhhhhhcchhHHHhhhcCCc
Confidence                       111111111  1112222233321        33455555688899999998764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.14  E-value=3.6e-08  Score=84.40  Aligned_cols=227  Identities=16%  Similarity=0.098  Sum_probs=134.2

Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE  230 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  230 (434)
                      +|.|..||..+++.+....+..                   .. ....+. ..+++..+++++.++.|..||..+|+.+.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-------------------~~-~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W   60 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-------------------GI-GGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLW   60 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-------------------SC-SSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCC-------------------CC-CCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence            6889999988777776664310                   01 111211 22357788888899999999999999988


Q ss_pred             EcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEE
Q 046226          231 TIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW  310 (434)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  310 (434)
                      .+... ..+.......++.++.+..++.|+.+|..  .+.........................+..++++..++.|..+
T Consensus        61 ~~~~~-~~~~~~~~~~~~~v~v~~~~~~l~~~d~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~  137 (238)
T PF13360_consen   61 RFDLP-GPISGAPVVDGGRVYVGTSDGSLYALDAK--TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVAL  137 (238)
T ss_dssp             EEECS-SCGGSGEEEETTEEEEEETTSEEEEEETT--TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEE
T ss_pred             Eeecc-ccccceeeecccccccccceeeeEecccC--CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEE
Confidence            87752 22222223345577777788899999976  3333333211111111112222333347888889889999999


Q ss_pred             EcCcccccccccCcccCccc-------ceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          311 HKGWFSAQLQYGGALQGHTH-------AVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       311 d~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      |+.+.+...........-..       ....+.+.+..++.++.++.+..+|+.++   +.+....  ...+..+ ....
T Consensus       138 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~~-~~~~  211 (238)
T PF13360_consen  138 DPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYSL-PSVD  211 (238)
T ss_dssp             ETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECEC-EECC
T ss_pred             ecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCC---CEEEEec--CCCccCC-ceee
Confidence            98877665544321111011       11333445557777887886444499988   3332222  2222221 2233


Q ss_pred             ccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          384 RFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       384 ~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                               +..|+.++.|+.|..||+.+++..
T Consensus       212 ---------~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  212 ---------GGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             ---------CTEEEEEETTTEEEEEETTTTEEE
T ss_pred             ---------CCEEEEEeCCCEEEEEECCCCCEE
Confidence                     667777779999999999998753

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=8.8e-08  Score=88.66  Aligned_cols=236  Identities=14%  Similarity=-0.021  Sum_probs=129.7

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC--E--E-EEEEcCC--eEEEeecCCCCCceeeEeeeccCCCCceeEEE
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--R--V-YAAYGDG--KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLI  184 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~--l-~~~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (434)
                      ..|.+.|...+. ...+......+..=+|+||  .  + ++...+|  .|.+.++..++.....                
T Consensus       165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt----------------  227 (428)
T PRK01029        165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL----------------  227 (428)
T ss_pred             ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee----------------
Confidence            367677765443 3344445556677799998  3  2 2333344  4666676654332221                


Q ss_pred             eccccccCcCCCeEEEEEecCCCEEEEEec-CC----cEEEEEcCCC---eeEEEcccCccCeEEEEEcCCC-eEEEEe-
Q 046226          185 VGKDKMMKHMGPITSIAINVSDDTLYSASL-DK----TIKVWRIRDS---KCIETIQAHSEPINALVVADDG-VLYSAS-  254 (434)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg----~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-  254 (434)
                             ...+.....+|+|||+.|+..+. +|    .+..|++..+   +................|+||| .|+..+ 
T Consensus       228 -------~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~  300 (428)
T PRK01029        228 -------ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN  300 (428)
T ss_pred             -------cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC
Confidence                   13333456799999998886543 22    3444777652   3333333333345678999999 555544 


Q ss_pred             CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC---CeEEEEEcCcccccccccCcccCcccc
Q 046226          255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD---GYIHYWHKGWFSAQLQYGGALQGHTHA  331 (434)
Q Consensus       255 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~  331 (434)
                      .+|...+|.+.......   ....+......+....|+|||+.|+....+   ..|.+||+.........     .....
T Consensus       301 ~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-----~~~~~  372 (428)
T PRK01029        301 KDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-----TSPEN  372 (428)
T ss_pred             CCCCceEEEEECccccc---ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-----CCCCC
Confidence            56766666543111111   122223333466788999999988876543   47899998655432111     11112


Q ss_pred             eEEEEe--eCCEEEE-ecC--CCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          332 VMCLAS--VANYVIS-GSA--DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       332 v~~~~~--~~~~l~s-~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      +....|  +|+.|+. ...  +..|+++|+..+.. ..+   ....+.+...+|+|-
T Consensus       373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~L---t~~~g~~~~p~Ws~~  425 (428)
T PRK01029        373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKI---VIGSGEKRFPSWGAF  425 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEe---ecCCCcccCceecCC
Confidence            333444  5676654 332  35788889877532 222   223444566777764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.09  E-value=5.8e-10  Score=102.27  Aligned_cols=229  Identities=13%  Similarity=0.152  Sum_probs=156.1

Q ss_pred             EEEEEeCCCeEEEecCCC---ceeEeeccCCCccEEEEEEeC---CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226          104 FIYTGSDSNVIRIWKQPE---FTECGRLKAKTSMVVAMEVSH---DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus       104 ~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~---~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      +-++......-.+|++..   ......+.+|...|+.+.|++   +.+++++.|-.+..||++.........        
T Consensus        83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~--------  154 (1081)
T KOG0309|consen   83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST--------  154 (1081)
T ss_pred             eeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee--------
Confidence            333344445566898753   334455678999999999986   489999999999999998654322211        


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEEEEEcCCC--eEEEEe
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVVADDG--VLYSAS  254 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~--~l~s~~  254 (434)
                                   ..-......++|+-....+++.+..+.|.+||++.| .++..+++|...|+.++|..-.  .+.+++
T Consensus       155 -------------~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~  221 (1081)
T KOG0309|consen  155 -------------SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS  221 (1081)
T ss_pred             -------------ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC
Confidence                         023345677889876666666677788999999876 5788889999999999998654  899999


Q ss_pred             CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC--EEEEEcCCCeEEEEEcCcccc------cccccCccc
Q 046226          255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG--LLYGGCTDGYIHYWHKGWFSA------QLQYGGALQ  326 (434)
Q Consensus       255 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~  326 (434)
                      .||+|+.||.........     .......++..-++.|-|.  ++.---.+..+.+++.+....      .......+.
T Consensus       222 ~d~tvkfw~y~kSt~e~~-----~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~  296 (1081)
T KOG0309|consen  222 NDGTVKFWDYSKSTTESK-----RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV  296 (1081)
T ss_pred             CCCceeeecccccccccc-----eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec
Confidence            999999999762221111     1122345666667777433  333222333555655443222      234456788


Q ss_pred             CcccceEEEEee------CC------EEEEecCCCcEEEEeccC
Q 046226          327 GHTHAVMCLASV------AN------YVISGSADSTSRVWAREQ  358 (434)
Q Consensus       327 ~~~~~v~~~~~~------~~------~l~s~~~dg~i~iwd~~~  358 (434)
                      ||...|..+.|-      ++      .|++=+.|..+++|-+.+
T Consensus       297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            999988777662      11      799999999999998764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.07  E-value=4.1e-07  Score=91.30  Aligned_cols=243  Identities=11%  Similarity=0.085  Sum_probs=151.7

Q ss_pred             CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE
Q 046226          131 KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT  208 (434)
Q Consensus       131 ~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  208 (434)
                      ....|.++.|-++  .++.+..+|.|.+............++..                   .-...|.+++|+||+..
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG-------------------~vd~GI~a~~WSPD~El  134 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG-------------------SVDSGILAASWSPDEEL  134 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE-------------------EEcCcEEEEEECCCcCE
Confidence            4568999999887  78899999999999332211111111110                   25567999999999999


Q ss_pred             EEEEecCCcEEEEEcCC-----------------------CeeEEEccc------------------------CccCeEE
Q 046226          209 LYSASLDKTIKVWRIRD-----------------------SKCIETIQA------------------------HSEPINA  241 (434)
Q Consensus       209 l~s~~~dg~i~vwd~~~-----------------------~~~~~~~~~------------------------~~~~v~~  241 (434)
                      |+..+.+++|.+.+-.-                       |+.-..|.+                        ....-..
T Consensus       135 la~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~  214 (928)
T PF04762_consen  135 LALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVR  214 (928)
T ss_pred             EEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceE
Confidence            99999899888774310                       111111111                        1223457


Q ss_pred             EEEcCCC-eEEEEeC---C---CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC---CCeEEEEE
Q 046226          242 LVVADDG-VLYSASD---D---ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---DGYIHYWH  311 (434)
Q Consensus       242 ~~~~~~~-~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d  311 (434)
                      |+|..|| ++++.+.   .   ..+|||+..       ..+......-.+--.+++|.|.|+++++...   ...|.+|.
T Consensus       215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-------G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-------GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             EEECCCCcEEEEEEEEcCCCceeEEEEECCC-------ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence            8899999 7666653   2   579999754       2233332333334457899999999998764   45677776


Q ss_pred             cCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecc-ccceeEEEEeecccCCC
Q 046226          312 KGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGH-RGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~  388 (434)
                      -+.. .-.++.-.+......|..+.|+  ++.|+..-.|. |.+|-..+. .+-..+.+.-. ...+..+.|+|..    
T Consensus       288 rNGL-rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdpe~----  360 (928)
T PF04762_consen  288 RNGL-RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDPEK----  360 (928)
T ss_pred             cCCc-EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC-EEEEEEEEEccCCCCCCceEECCCC----
Confidence            3322 2222222233455678999997  55777766554 999998875 33444444432 3345559999874    


Q ss_pred             CCCcccEEEEeecCCeEEEEec
Q 046226          389 TEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       389 ~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                          ...|.....+|.+..+++
T Consensus       361 ----p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  361 ----PLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             ----CCEEEEEecCCcEEEEEE
Confidence                556666666677655444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.06  E-value=3.7e-08  Score=79.88  Aligned_cols=192  Identities=10%  Similarity=-0.020  Sum_probs=132.2

Q ss_pred             cCCEEEEEeCCCeEEEecCCCcee-EeeccCCCccEEEE---EEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTE-CGRLKAKTSMVVAM---EVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKT  176 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l---~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  176 (434)
                      .-.+||.|+.-|...+|...+.+. ......|...|.-+   +-..-.+..++.|.++++.+++.+......        
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--------  154 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--------  154 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--------
Confidence            556899999999999999876443 23333343333222   222226888999999999988654333222        


Q ss_pred             CCceeEEEeccccccCcCCC--eEEEEEecCCCEEEEEecCCcEEEEEcCCC-e-eEE-EcccCccCeEEEEEcCCC-eE
Q 046226          177 GGAVRNLIVGKDKMMKHMGP--ITSIAINVSDDTLYSASLDKTIKVWRIRDS-K-CIE-TIQAHSEPINALVVADDG-VL  250 (434)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~-~~~-~~~~~~~~v~~~~~~~~~-~l  250 (434)
                                      |...  +.++++++|++++++.+....|..|.+... + .+. ......+.-.+..|+... .+
T Consensus       155 ----------------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~F  218 (344)
T KOG4532|consen  155 ----------------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQF  218 (344)
T ss_pred             ----------------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceE
Confidence                            3333  788999999999999999999999988643 2 222 222234445678888877 99


Q ss_pred             EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC--EEEEEcCCCeEEEEEcCcccc
Q 046226          251 YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG--LLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      +++..||++.|||++..... ..........|.+.++.+.|++.|.  +|+..-.-+.+.+.|++....
T Consensus       219 Av~~Qdg~~~I~DVR~~~tp-m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  219 AVVFQDGTCAIYDVRNMATP-MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             EEEecCCcEEEEEecccccc-hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            99999999999999833221 1222334556889999999998553  455555567899999886543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=1.1e-07  Score=88.88  Aligned_cols=195  Identities=13%  Similarity=0.034  Sum_probs=110.5

Q ss_pred             CcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCCe--EEEEec
Q 046226          192 KHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDAT--VRVWRR  264 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~--i~iwd~  264 (434)
                      .+...+.+..|+|||+.|+..+.+   ..|++||+.+++... +....+......|+||+ .|+ +...+|.  |.++|+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            356678899999999998876543   268999998876432 22223334578999999 454 4566675  666666


Q ss_pred             ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEEeeCCE
Q 046226          265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANY  341 (434)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  341 (434)
                      .  .. .    ...+..+.......+|+|||+.|+..+. ++  .|+++|+...... .+  ...++...-.+++.+|++
T Consensus       294 ~--tg-~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~L--t~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        294 A--TK-A----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RL--TFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             C--CC-C----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EE--ecCCCCCcCeeECCCCCE
Confidence            5  11 1    1222333345567899999998876553 44  4555666433221 11  112222222345566777


Q ss_pred             EEEecC-CC--cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee-cCCe--EEEEecC
Q 046226          342 VISGSA-DS--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS-LDGV--LKMWRVT  411 (434)
Q Consensus       342 l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~--v~iw~~~  411 (434)
                      |+..+. ++  .|.++|+.++.. ..   +... .......|+|+         |++|+..+ .+|.  +++++.+
T Consensus       364 l~~~~~~~g~~~I~~~dl~~g~~-~~---lt~~-~~d~~ps~spd---------G~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        364 MIMVNRTNGKFNIARQDLETGAM-QV---LTST-RLDESPSVAPN---------GTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             EEEEEecCCceEEEEEECCCCCe-EE---ccCC-CCCCCceECCC---------CCEEEEEEecCCceEEEEEECC
Confidence            666544 44  455567766521 22   2111 11223467777         77666544 3443  6666764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=1.4e-07  Score=87.26  Aligned_cols=203  Identities=8%  Similarity=-0.061  Sum_probs=112.4

Q ss_pred             cCCCeEEEEEecCCCEE---EEEecC--CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCC----eEEE
Q 046226          193 HMGPITSIAINVSDDTL---YSASLD--KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDA----TVRV  261 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l---~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg----~i~i  261 (434)
                      ....+.+=.|+|||+.+   ++...+  ..|.+.++.+++.... ....+......|+||| .|+..+ .+|    .+..
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            34455667999999752   244444  3688889987764332 2234445578999999 555443 223    3444


Q ss_pred             EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEc--CcccccccccCcccCcccceEE--EE
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHK--GWFSAQLQYGGALQGHTHAVMC--LA  336 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~v~~--~~  336 (434)
                      |++.......   ...............+|+|||+.|+..+ .+|...+|.+  ........   .+..+...+..  ++
T Consensus       262 ~~~~~g~~g~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~---~lt~~~~~~~~p~wS  335 (428)
T PRK01029        262 FSLETGAIGK---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR---LLTKKYRNSSCPAWS  335 (428)
T ss_pred             eecccCCCCc---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE---EeccCCCCccceeEC
Confidence            6654111111   1111112223345679999999877655 4665555543  21111111   11122223333  44


Q ss_pred             eeCCEEEEecCC---CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe-ec--CCeEEEEec
Q 046226          337 SVANYVISGSAD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG-SL--DGVLKMWRV  410 (434)
Q Consensus       337 ~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~--Dg~v~iw~~  410 (434)
                      ++|+.|+..+.+   ..|.+||+.++.. .   .+......+....|+|+         |+.|+.. ..  +..|++|++
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~-~---~Lt~~~~~~~~p~wSpD---------G~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLATGRD-Y---QLTTSPENKESPSWAID---------SLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCe-E---EccCCCCCccceEECCC---------CCEEEEEECCCCCceEEEEEC
Confidence            467777665433   4699999987632 2   22222345667889988         7776643 32  356888898


Q ss_pred             CCCCc
Q 046226          411 TRPKS  415 (434)
Q Consensus       411 ~~~~~  415 (434)
                      ..++.
T Consensus       403 ~~g~~  407 (428)
T PRK01029        403 ITKKT  407 (428)
T ss_pred             CCCCE
Confidence            87654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=6.7e-07  Score=91.50  Aligned_cols=209  Identities=8%  Similarity=0.040  Sum_probs=128.5

Q ss_pred             CCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEcccC-----------------ccCeEEEEEcC-CC-eEEEE
Q 046226          194 MGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIETIQAH-----------------SEPINALVVAD-DG-VLYSA  253 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~-~l~s~  253 (434)
                      -.....+++.++++.|+++.. ++.|+++|+.++. +.++.+.                 -..-..+++++ ++ ++++.
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence            345688999998887766654 5679999987765 3333210                 11235789998 45 66777


Q ss_pred             eCCCeEEEEecccccCcceeEEE-----EEec------ccccCeEEEEEecCCCEE-EEEcCCCeEEEEEcCcccccccc
Q 046226          254 SDDATVRVWRRYFYSENQLHTLI-----LTLT------AKYSPVKTLTLTLDDGLL-YGGCTDGYIHYWHKGWFSAQLQY  321 (434)
Q Consensus       254 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~  321 (434)
                      ..++.|++||....   ......     ....      ........++++|+++.| ++-..++.|++||+.........
T Consensus       702 ~~~~~I~v~d~~~g---~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        702 AGQHQIWEYNISDG---VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             CCCCeEEEEECCCC---eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence            78899999997521   110000     0000      111345679999998855 45566799999998753321100


Q ss_pred             ---------cCccc---C-----cccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEE----------eeccc
Q 046226          322 ---------GGALQ---G-----HTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAV----------LVGHR  372 (434)
Q Consensus       322 ---------~~~~~---~-----~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~h~  372 (434)
                               ...+.   +     .-....++++  +|+++++-..++.|++||..++........          ..+.-
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l  858 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL  858 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence                     00000   0     0011234444  467888888999999999987521111100          01112


Q ss_pred             cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      .....++++++         |+++++-+.++.|++||+.+++.
T Consensus       859 ~~P~GIavd~d---------G~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        859 SEPAGLALGEN---------GRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCceEEEEeCC---------CCEEEEECCCCEEEEEECCCCcc
Confidence            24677888888         88999999999999999988754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=6e-09  Score=95.52  Aligned_cols=245  Identities=13%  Similarity=0.083  Sum_probs=162.1

Q ss_pred             CccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEE
Q 046226          132 TSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTL  209 (434)
Q Consensus       132 ~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  209 (434)
                      .....|+.|+.+  ++++|+.||.++|..+.+...-....       +-....-......+.+|...|.-+.|+.+.+.|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~-------glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL   86 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS-------GLAAASNLSMNQTLEGHNASVMVVTWNENNQKL   86 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc-------ccccccccchhhhhccCcceEEEEEeccccccc
Confidence            345789999876  89999999999999887653322111       100111122334566899999999999999999


Q ss_pred             EEEecCCcEEEEEcCCCeeEEEcc--cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCe
Q 046226          210 YSASLDKTIKVWRIRDSKCIETIQ--AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV  286 (434)
Q Consensus       210 ~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  286 (434)
                      -+...+|.|.+|-+-.|.-...+.  .....|.+++|+.+| .+.....||.|.+=.+.   +...+.  ..+.  ....
T Consensus        87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd---GNRIwg--KeLk--g~~l  159 (1189)
T KOG2041|consen   87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD---GNRIWG--KELK--GQLL  159 (1189)
T ss_pred             cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec---cceecc--hhcc--hhec
Confidence            999999999999997775433322  245678999999999 88888889888776554   111111  1111  1234


Q ss_pred             EEEEEecCCCEEEEEcCCCeEEEEEcCccc-cccccc------CcccCcccceEEEEee----------CCEEEEecCCC
Q 046226          287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFS-AQLQYG------GALQGHTHAVMCLASV----------ANYVISGSADS  349 (434)
Q Consensus       287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~------~~~~~~~~~v~~~~~~----------~~~l~s~~~dg  349 (434)
                      ..+.|++|.+.++.+-..|.+++||....- .+.+..      ..+......|..+.|.          --.|+.+-.+|
T Consensus       160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG  239 (1189)
T KOG2041|consen  160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG  239 (1189)
T ss_pred             cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence            478899999999999999999999964321 111110      0111111123444442          22789999999


Q ss_pred             cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC
Q 046226          350 TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG  403 (434)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg  403 (434)
                      .+.|-.-.+...+..+.    -.-.|..+.|+++         |.+|+.+|.|.
T Consensus       240 r~QiMR~eND~~Pvv~d----tgm~~vgakWnh~---------G~vLAvcG~~~  280 (1189)
T KOG2041|consen  240 RMQIMRSENDPEPVVVD----TGMKIVGAKWNHN---------GAVLAVCGNDS  280 (1189)
T ss_pred             eehhhhhcCCCCCeEEe----cccEeecceecCC---------CcEEEEccCcc
Confidence            99998766653222221    1256788999998         89999988653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.01  E-value=2.7e-06  Score=70.34  Aligned_cols=195  Identities=12%  Similarity=0.090  Sum_probs=117.7

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-------CccCeEEEEEcCCC-------eEEEEeCCCeEE
Q 046226          195 GPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-------HSEPINALVVADDG-------VLYSASDDATVR  260 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-------~l~s~~~dg~i~  260 (434)
                      ..=+-++|+||+.+||.+...|+|+++|+... .+..+..       -...|..+.|.+..       .|+.-..+|.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            34577899999999999999999999999653 3334332       12456666665321       577778888888


Q ss_pred             EEecccccC-cceeEEEEEecc-cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe-
Q 046226          261 VWRRYFYSE-NQLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-  337 (434)
Q Consensus       261 iwd~~~~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-  337 (434)
                      -|-+..... .........+.. ....|.++.++|..++|++|+....    +    ..      .-.+....+++... 
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~----~----~~------~s~a~~~GLtaWRiL  188 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN----Q----DG------MSKASSCGLTAWRIL  188 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC----C----Cc------cccccccCceEEEEc
Confidence            876642111 112222223332 3568999999999888887765322    0    00      00012223333332 


Q ss_pred             e--CCEE-EEecCCCc------EEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226          338 V--ANYV-ISGSADST------SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       338 ~--~~~l-~s~~~dg~------i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw  408 (434)
                      +  +-+. ++...|+.      ..+|.+-+.   ............|..|..+|+         |..||+...+|.|.+|
T Consensus       189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~d~i~kmSlSPd---------g~~La~ih~sG~lsLW  256 (282)
T PF15492_consen  189 SDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQGQEQDGIFKMSLSPD---------GSLLACIHFSGSLSLW  256 (282)
T ss_pred             CCCCcEEEccccCccccccccccceeeccce---eeeeccccCCCceEEEEECCC---------CCEEEEEEcCCeEEEE
Confidence            1  2222 22222222      133433322   122222334677999999999         9999999999999999


Q ss_pred             ecCCCCcc
Q 046226          409 RVTRPKSS  416 (434)
Q Consensus       409 ~~~~~~~~  416 (434)
                      ++.+-+..
T Consensus       257 ~iPsL~~~  264 (282)
T PF15492_consen  257 EIPSLRLQ  264 (282)
T ss_pred             ecCcchhh
Confidence            99976644

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.00  E-value=1.3e-06  Score=89.48  Aligned_cols=249  Identities=11%  Similarity=0.065  Sum_probs=142.4

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccC-C-------------CccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKA-K-------------TSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDN  163 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~-------------~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~  163 (434)
                      +++++++-..++.|++||... ..+..+.. .             -..-..++++++  .|+++.. ++.|+++|..++.
T Consensus       579 ~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~  657 (1057)
T PLN02919        579 NNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET  657 (1057)
T ss_pred             CCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE
Confidence            456777777888999999754 43333322 1             012467888764  4555544 5778888876542


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEccc--------
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQA--------  234 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------  234 (434)
                       +..+.     ..+........+.......-..-..++|+|+ +.++++...++.|++||..++... .+.+        
T Consensus       658 -V~tla-----g~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~  730 (1057)
T PLN02919        658 -VRTLA-----GNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLN  730 (1057)
T ss_pred             -EEEEe-----ccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCC
Confidence             22211     0000000000000000001123468899994 555666677889999999876542 2211        


Q ss_pred             -------CccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEE----------EEec--------ccccCeE
Q 046226          235 -------HSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLI----------LTLT--------AKYSPVK  287 (434)
Q Consensus       235 -------~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~--------~~~~~v~  287 (434)
                             .-.....|+++|++  ++++-..++.|++||+....   .....          ..+.        .......
T Consensus       731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~---~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG---SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc---EEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                   11234679999987  55566677999999986211   10000          0000        0112346


Q ss_pred             EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC---------cccCcccceEEEEe--eCCEEEEecCCCcEEEEec
Q 046226          288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG---------ALQGHTHAVMCLAS--VANYVISGSADSTSRVWAR  356 (434)
Q Consensus       288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~  356 (434)
                      .++++++|+++++-..++.|++||..+.........         ...+.-.....+++  +|+.+++-+.++.|++||+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            889999999888889999999999864332211000         01111223445555  5778888889999999999


Q ss_pred             cCCC
Q 046226          357 EQDG  360 (434)
Q Consensus       357 ~~~~  360 (434)
                      .++.
T Consensus       888 ~~~~  891 (1057)
T PLN02919        888 NKGE  891 (1057)
T ss_pred             CCCc
Confidence            8863

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.1e-07  Score=85.02  Aligned_cols=249  Identities=10%  Similarity=0.108  Sum_probs=155.6

Q ss_pred             EEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC----EEEE-----EEcCCeEEEeecCCCCCc
Q 046226           96 LCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD----RVYA-----AYGDGKIRVWRSTWDNGV  165 (434)
Q Consensus        96 ~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~-----~s~dg~i~vwd~~~~~~~  165 (434)
                      ++..| .++.|+.=-..+.+.+|++.+.+.+. -+-|...|..+.++|.    .+++     .+.-..|+||........
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~  207 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH  207 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence            56777 44455544456789999987744332 2336778899999886    3332     244678999976522211


Q ss_pred             eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE---EEec---------CCcEEEEEcCCCeeEEEcc
Q 046226          166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY---SASL---------DKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---s~~~---------dg~i~vwd~~~~~~~~~~~  233 (434)
                      ..+....          +         ....=..+.|++-|.-|+   +..-         ..++++.+++...+...+.
T Consensus       208 ~~~a~ks----------F---------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~  268 (566)
T KOG2315|consen  208 QPVANKS----------F---------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL  268 (566)
T ss_pred             chhhhcc----------c---------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence            1110000          0         111223456666554322   2222         2468888887445554443


Q ss_pred             cCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC---CCeE
Q 046226          234 AHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---DGYI  307 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i  307 (434)
                       ..++|.++.|++++   -++-|-.--.+.|||++       ...+.  .-..++=+++-|+|.|++++.++-   .|.|
T Consensus       269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-------~~~v~--df~egpRN~~~fnp~g~ii~lAGFGNL~G~m  338 (566)
T KOG2315|consen  269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-------GKPVF--DFPEGPRNTAFFNPHGNIILLAGFGNLPGDM  338 (566)
T ss_pred             -CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-------CCEeE--eCCCCCccceEECCCCCEEEEeecCCCCCce
Confidence             57899999999999   34455567889999987       22222  234567788999999999888765   5899


Q ss_pred             EEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecC------CCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226          308 HYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSA------DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       308 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  381 (434)
                      -+||+..    .+.+..+......+...+++|++|++++.      |+.++||+....    .+....-.+ ....+.|-
T Consensus       339 EvwDv~n----~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~----~l~~~~f~s-EL~qv~W~  409 (566)
T KOG2315|consen  339 EVWDVPN----RKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS----LLHEKMFKS-ELLQVEWR  409 (566)
T ss_pred             EEEeccc----hhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc----eeehhhhhH-hHhheeee
Confidence            9999864    34444555666677777888999988874      788999998753    222211111 46667777


Q ss_pred             ec
Q 046226          382 LG  383 (434)
Q Consensus       382 ~~  383 (434)
                      |.
T Consensus       410 P~  411 (566)
T KOG2315|consen  410 PF  411 (566)
T ss_pred             ec
Confidence            65

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.98  E-value=2.7e-09  Score=85.98  Aligned_cols=196  Identities=16%  Similarity=0.177  Sum_probs=118.3

Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE------------EcccCccCeEEEEEc-CCCeEEEEeCCCeEEEEe
Q 046226          197 ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE------------TIQAHSEPINALVVA-DDGVLYSASDDATVRVWR  263 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~-~~~~l~s~~~dg~i~iwd  263 (434)
                      ++.+.+. ....|+++..++.+......++.+..            .+..|.++-.+-+.+ ++..++++..||.+.+++
T Consensus        39 ~~~~~~v-~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLS-AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeech-hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            4455554 34456677777766666554443322            222222222122222 233799999999999998


Q ss_pred             cccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-----CCeEEEEEcCcccccccccCcccCcccceEEEEee
Q 046226          264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-----DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV  338 (434)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  338 (434)
                      .+.     ..............-.+.++...++.+.++..     -+..+.|+++..+........+    ..|.+++-+
T Consensus       118 ~~~-----~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~----~~v~~l~~h  188 (319)
T KOG4714|consen  118 TDK-----DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL----DAVTALCSH  188 (319)
T ss_pred             chH-----HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc----ccchhhhCC
Confidence            762     11111111111122233344445555554432     3345666665333222211111    226666655


Q ss_pred             ---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          339 ---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       339 ---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                         .+.+++|+.||.+-+||.++..  .+...+..|..+|+.+-|+|..        +..|+++++||.+..||-.+
T Consensus       189 p~qq~~v~cgt~dg~~~l~d~rn~~--~p~S~l~ahk~~i~eV~FHpk~--------p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  189 PAQQHLVCCGTDDGIVGLWDARNVA--MPVSLLKAHKAEIWEVHFHPKN--------PEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccccEEEEecCCCeEEEEEccccc--chHHHHHHhhhhhhheeccCCC--------chheeEecCCCcEEEEcCCC
Confidence               3488999999999999999863  5666788999999999999986        78999999999999999773

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.98  E-value=1.2e-06  Score=75.04  Aligned_cols=212  Identities=14%  Similarity=0.118  Sum_probs=131.8

Q ss_pred             CCCeEEEecCCCceeEeeccCC--CccEEEEEE-eCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226          110 DSNVIRIWKQPEFTECGRLKAK--TSMVVAMEV-SHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG  186 (434)
Q Consensus       110 ~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~-~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
                      .+|+|..||..+++.+.+....  .....+... ..+.+++++.++.|..||..+++.+........             
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-------------   67 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-------------   67 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-------------
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-------------
Confidence            3789999999999998887541  122332233 666888889999999999988877666643110             


Q ss_pred             cccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc-ccCcc-----CeEEEEEcCCCeEEEEeCCCeEE
Q 046226          187 KDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI-QAHSE-----PINALVVADDGVLYSASDDATVR  260 (434)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~-----~v~~~~~~~~~~l~s~~~dg~i~  260 (434)
                            ....    . ...+..+++++.++.|+.+|..+|+.+... .....     ......+. ++.++.+..++.|.
T Consensus        68 ------~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~  135 (238)
T PF13360_consen   68 ------ISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLV  135 (238)
T ss_dssp             ------GGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEE
T ss_pred             ------ccce----e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEE
Confidence                  0111    1 224666777778889999999999998884 32211     11223333 34788888899999


Q ss_pred             EEecccccCcceeEEEEEeccccc----------CeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCccc
Q 046226          261 VWRRYFYSENQLHTLILTLTAKYS----------PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH  330 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  330 (434)
                      .+|+.  .+    ..+-.......          .+..-....++ .++.+..++.+..+|+.+.......  ...    
T Consensus       136 ~~d~~--tG----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~--~~~----  202 (238)
T PF13360_consen  136 ALDPK--TG----KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSK--PIS----  202 (238)
T ss_dssp             EEETT--TT----EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEE--CSS----
T ss_pred             EEecC--CC----cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEe--cCC----
Confidence            99987  22    22222221111          11122222234 7777777776444488766533321  111    


Q ss_pred             ceEE-EEeeCCEEEEecCCCcEEEEeccCC
Q 046226          331 AVMC-LASVANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       331 ~v~~-~~~~~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      .+.. ...+++.|+.++.++.|..||++++
T Consensus       203 ~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  203 GIYSLPSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             -ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred             CccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence            1333 5667888888889999999999998

...

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.98  E-value=3.5e-06  Score=68.56  Aligned_cols=122  Identities=11%  Similarity=0.068  Sum_probs=85.4

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEE-EeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAME-VSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~-~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      ...+++.|+..+.+.--|..++....+-.. ...|.+-+ .-.|.++.|+..|.+++.+.+++.....+...        
T Consensus        22 skT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--------   92 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--------   92 (354)
T ss_pred             CceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh--------
Confidence            357888889999999889998887765332 22333322 25678999999999999999988776666421        


Q ss_pred             eeEEEeccccccCcCCCeEE-EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcC
Q 046226          180 VRNLIVGKDKMMKHMGPITS-IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD  246 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  246 (434)
                                     +.|.+ ....+++..+..|+.|++.+..|..+..++...+...+...+-++.+
T Consensus        93 ---------------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   93 ---------------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             ---------------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence                           11221 22356899999999999999999999888887764433333333333

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.96  E-value=1.3e-08  Score=87.15  Aligned_cols=154  Identities=16%  Similarity=0.143  Sum_probs=102.5

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCee----EEEcccCccCeEEEEEcCCC-eEEEEe---CCCeEEEEecccc
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKC----IETIQAHSEPINALVVADDG-VLYSAS---DDATVRVWRRYFY  267 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~  267 (434)
                      ....+..++++++++++..+....++++.....    +...... ..-+++.+..+. ....+.   ....+.+|...  
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~--  140 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSAD--  140 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeeccc--
Confidence            344556778899999998888877877764432    2222211 122333333333 333333   33444444433  


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CCEEEEec
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGS  346 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~  346 (434)
                          . .......+|-..+..++++||+++++++..|..|++-...   .......-+-||..-|..++.- +..|++++
T Consensus       141 ----~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp---a~f~IesfclGH~eFVS~isl~~~~~LlS~s  212 (390)
T KOG3914|consen  141 ----S-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP---ATFVIESFCLGHKEFVSTISLTDNYLLLSGS  212 (390)
T ss_pred             ----c-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecC---cccchhhhccccHhheeeeeeccCceeeecC
Confidence                1 2233456788999999999999999999999999998753   2222223345899999999886 45679999


Q ss_pred             CCCcEEEEeccCCC
Q 046226          347 ADSTSRVWAREQDG  360 (434)
Q Consensus       347 ~dg~i~iwd~~~~~  360 (434)
                      .|++|++||+.+++
T Consensus       213 GD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  213 GDKTLRLWDITSGK  226 (390)
T ss_pred             CCCcEEEEecccCC
Confidence            99999999999984

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.96  E-value=1.3e-06  Score=77.43  Aligned_cols=311  Identities=11%  Similarity=0.053  Sum_probs=185.9

Q ss_pred             cCCCCCCCCCCCCCccCCCCCCCc----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCC---------------e
Q 046226           55 TSPLSSPRHPFNPTAAAGSSSPET----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSN---------------V  113 (434)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg---------------~  113 (434)
                      +-+......++.+..++.....+.    -..+..+..+. | ..|.-+.|  .+.+|.|=+..+               .
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~  109 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN  109 (561)
T ss_pred             CcchhheeecCcchheehhhccceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence            334555566777777777665432    23333333332 2 34777777  889999866544               4


Q ss_pred             EEEecCCCceeEeeccCCCcc--EE-EEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226          114 IRIWKQPEFTECGRLKAKTSM--VV-AMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD  188 (434)
Q Consensus       114 i~iwd~~~~~~~~~~~~~~~~--v~-~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
                      +.+||+.++..+..+.....+  .+ -+.|+-+  +++-. ....+.|+++ ++... ......                
T Consensus       110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~----------------  170 (561)
T COG5354         110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE-EHPFKN----------------  170 (561)
T ss_pred             eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-cCchhh----------------
Confidence            999999999999988776655  44 5667665  22222 3566889987 22211 110000                


Q ss_pred             cccCcCCCeEEEEEecCC--CEEEE-----EecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEE-E---e--
Q 046226          189 KMMKHMGPITSIAINVSD--DTLYS-----ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYS-A---S--  254 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~--~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s-~---~--  254 (434)
                         -....|....|+|.+  ..|+.     ...++++++|.+..+..+.+-.-....-..+.|.+.| .|+. .   .  
T Consensus       171 ---lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks  247 (561)
T COG5354         171 ---LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS  247 (561)
T ss_pred             ---ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence               022457777888763  33332     3557889999998766555443333333467788777 2221 1   1  


Q ss_pred             -----CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE--cCCCeEEEEEcCcccccccccCcccC
Q 046226          255 -----DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG--CTDGYIHYWHKGWFSAQLQYGGALQG  327 (434)
Q Consensus       255 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~  327 (434)
                           ....+.++++.      ...+ .......++|...+|.|.++.+++.  -.+..+.++|++..   ..+.  +..
T Consensus       248 nKsyfgesnLyl~~~~------e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~--~Pe  315 (561)
T COG5354         248 NKSYFGESNLYLLRIT------ERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFY--FPE  315 (561)
T ss_pred             ccceeccceEEEEeec------cccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc---eEEe--cCC
Confidence                 12456777665      1111 1111456899999999988766554  56889999998643   2211  111


Q ss_pred             cccceEEEEeeCCEEEEecCC---CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee----
Q 046226          328 HTHAVMCLASVANYVISGSAD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS----  400 (434)
Q Consensus       328 ~~~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~----  400 (434)
                      ....-..++.++++++.++-|   |.+.+||....  ..++..+.+-..  .-+.|+|+         ++++.+.-    
T Consensus       316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r--f~~~~~~~~~n~--s~~~wspd---------~qF~~~~~ts~k  382 (561)
T COG5354         316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR--FKVAGAFNGLNT--SYCDWSPD---------GQFYDTDTTSEK  382 (561)
T ss_pred             cccccccccCcccEEEEecCCccccceEEeccCCc--eEEEEEeecCCc--eEeeccCC---------ceEEEecCCCcc
Confidence            111122334457788876654   68999998764  345545555432  34678888         77776653    


Q ss_pred             --cCCeEEEEecCCCC
Q 046226          401 --LDGVLKMWRVTRPK  414 (434)
Q Consensus       401 --~Dg~v~iw~~~~~~  414 (434)
                        .|..|+||++...+
T Consensus       383 ~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         383 LRVDNSIKLWDVYGAK  398 (561)
T ss_pred             cccCcceEEEEecCch
Confidence              68899999997543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=4e-09  Score=88.42  Aligned_cols=153  Identities=13%  Similarity=0.168  Sum_probs=109.6

Q ss_pred             EEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEE
Q 046226          210 YSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKT  288 (434)
Q Consensus       210 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  288 (434)
                      ++.+.+..|.+-|+++|.. +.|. ..+.|.++.|...+ +++.|..+|.|..+|++.......+..  ..--|...|++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a--~rlyh~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA--QRLYHDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce--EEEEcCcchhh
Confidence            4455577899999998754 3333 56788899998755 999999999999999994322222222  22347788888


Q ss_pred             EEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceE----EEEeeCCEEEEecCCCcEEEEeccCCCcee
Q 046226          289 LTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVM----CLASVANYVISGSADSTSRVWAREQDGRHT  363 (434)
Q Consensus       289 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  363 (434)
                      +..-. ++++|++.+.+|+|++||++..+... -.....||...-.    .+...+..++++++|...|||.++.+   .
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g---h  379 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG---H  379 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccC---c
Confidence            88776 78999999999999999998655422 1234456654332    23334568889999999999999988   6


Q ss_pred             eEEEeec
Q 046226          364 MLAVLVG  370 (434)
Q Consensus       364 ~~~~~~~  370 (434)
                      ++.+++.
T Consensus       380 Ll~tipf  386 (425)
T KOG2695|consen  380 LLCTIPF  386 (425)
T ss_pred             eeeccCC
Confidence            6665543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=1.1e-06  Score=78.63  Aligned_cols=272  Identities=10%  Similarity=0.037  Sum_probs=167.9

Q ss_pred             EEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc-----------CCeEEEeecCC
Q 046226           97 CIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG-----------DGKIRVWRSTW  161 (434)
Q Consensus        97 ~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-----------dg~i~vwd~~~  161 (434)
                      -+.|  .|.||+|--.-| |.+|--++...++++. |.+ |.-+.|+|+  +|++=+.           ...++|||+.+
T Consensus       215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            3455  788999887655 7799888777777664 544 888999997  7777543           26799999999


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA  241 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  241 (434)
                      +...+.+....                   .....-.-+.|+.|++++|.-.. ..|.||+..+..++..-...-..|..
T Consensus       292 G~lkrsF~~~~-------------------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~  351 (698)
T KOG2314|consen  292 GLLKRSFPVIK-------------------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRD  351 (698)
T ss_pred             cchhcceeccC-------------------CCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccC
Confidence            88777664321                   11112234679999999998776 46999998765444333334567889


Q ss_pred             EEEcCCC-eEEEEeC--C---CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc----------CCC
Q 046226          242 LVVADDG-VLYSASD--D---ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC----------TDG  305 (434)
Q Consensus       242 ~~~~~~~-~l~s~~~--d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg  305 (434)
                      ..|+|.+ +|+-=..  +   ..+.+-.+.      ..+.+.+..-++-.=..+.|-.+|.+|+.--          .-.
T Consensus       352 FswsP~~~llAYwtpe~~~~parvtL~evP------s~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~  425 (698)
T KOG2314|consen  352 FSWSPTSNLLAYWTPETNNIPARVTLMEVP------SKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS  425 (698)
T ss_pred             cccCCCcceEEEEcccccCCcceEEEEecC------ccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence            9999987 4332211  1   122222222      1112222222222223466777788777532          112


Q ss_pred             eEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecC---CCcEEEEecc-CCCceeeEEEeeccccceeEEE
Q 046226          306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSA---DSTSRVWARE-QDGRHTMLAVLVGHRGPIRCAI  379 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~  379 (434)
                      .+.|+.++........   + .-...|..++|.  |+.+++-+.   ..++.+|.++ +...+.++..+..  ...+.+.
T Consensus       426 n~eIfrireKdIpve~---v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vf  499 (698)
T KOG2314|consen  426 NLEIFRIREKDIPVEV---V-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVF  499 (698)
T ss_pred             eEEEEEeeccCCCcee---e-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEE
Confidence            4556665533322221   1 233467888886  554444332   3579999988 4455556666544  4467799


Q ss_pred             EeecccCCCCCCcccEEEEee---cCCeEEEEecCC
Q 046226          380 AFLGRFGEETEDEYCTICTGS---LDGVLKMWRVTR  412 (434)
Q Consensus       380 ~~~~~~~~~~~~~~~~l~s~~---~Dg~v~iw~~~~  412 (434)
                      |+|.         |++++.+.   ..|.+.++|+..
T Consensus       500 wsPk---------G~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  500 WSPK---------GRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             EcCC---------CcEEEEEEecccccceEEEecch
Confidence            9999         88887764   578999999884

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.90  E-value=1.2e-05  Score=69.04  Aligned_cols=213  Identities=11%  Similarity=-0.010  Sum_probs=131.0

Q ss_pred             EEEE---cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEe-CC-EEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226           97 CIAV---GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVS-HD-RVYAAYGDGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus        97 ~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      +.+|   ++.++++--..+.|..|+..+++... +....  ...+++. ++ .++.+..++ +.++|..+++........
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence            3556   46677777778999999988876543 22222  6777777 55 777776655 455587765333322211


Q ss_pred             eccCCCCceeEEEeccccccC-cCCCeEEEEEecCCCEEEEEecC--------CcEEEEEcCCCeeEEEcccCccCeEEE
Q 046226          172 TIPKTGGAVRNLIVGKDKMMK-HMGPITSIAINVSDDTLYSASLD--------KTIKVWRIRDSKCIETIQAHSEPINAL  242 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~  242 (434)
                      .                  .. .....+++++.++|++.++....        |.|..++.. ++.... ...-...+.|
T Consensus        80 ~------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi  139 (246)
T PF08450_consen   80 D------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGI  139 (246)
T ss_dssp             T------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEE
T ss_pred             C------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccce
Confidence            0                  01 34568899999999977765543        557778876 554333 3345567899


Q ss_pred             EEcCCC-e-EEEEeCCCeEEEEecccccC-cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226          243 VVADDG-V-LYSASDDATVRVWRRYFYSE-NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       243 ~~~~~~-~-l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  319 (434)
                      +|+|++ . +++-+..+.|..+++..... ..............+..-.++++.+|++.++....+.|.++|.+ .+...
T Consensus       140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~  218 (246)
T PF08450_consen  140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR  218 (246)
T ss_dssp             EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred             EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence            999999 4 45667888899998863222 11122222333333347889999999988888889999999965 22111


Q ss_pred             cccCcccCcccceEEEEee
Q 046226          320 QYGGALQGHTHAVMCLASV  338 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~  338 (434)
                          .+......+++++|.
T Consensus       219 ----~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  219 ----EIELPVPRPTNCAFG  233 (246)
T ss_dssp             ----EEE-SSSSEEEEEEE
T ss_pred             ----EEcCCCCCEEEEEEE
Confidence                112222367888884

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=5.3e-07  Score=80.70  Aligned_cols=276  Identities=10%  Similarity=0.062  Sum_probs=165.8

Q ss_pred             EEEEEE--cCCEEEEEeC-----------CCeEEEecCCCceeEeeccCC--CccE-EEEEEeCC-EEEEEEcCCeEEEe
Q 046226           95 ILCIAV--GNGFIYTGSD-----------SNVIRIWKQPEFTECGRLKAK--TSMV-VAMEVSHD-RVYAAYGDGKIRVW  157 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~-----------dg~i~iwd~~~~~~~~~~~~~--~~~v-~~l~~~~~-~l~~~s~dg~i~vw  157 (434)
                      |.-+.|  ..+||+|=+.           ...++|||+.+|.....+...  ...+ .-+.|+.| ..++.-.-..|.||
T Consensus       252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIy  331 (698)
T KOG2314|consen  252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIY  331 (698)
T ss_pred             ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEE
Confidence            666677  7889998653           258999999999988887652  2222 33567776 33333334678899


Q ss_pred             ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--C---CcEEEEEcCCCeeEEEc
Q 046226          158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--D---KTIKVWRIRDSKCIETI  232 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d---g~i~vwd~~~~~~~~~~  232 (434)
                      +...-..+....                      -....|....|+|.++.||-=..  +   ..+.+..+.+++.+++-
T Consensus       332 Etpsf~lld~Ks----------------------lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~  389 (698)
T KOG2314|consen  332 ETPSFMLLDKKS----------------------LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK  389 (698)
T ss_pred             ecCceeeecccc----------------------cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec
Confidence            765321111110                      13456888899999888874322  1   35777777777777766


Q ss_pred             ccCccCeEEEEEcCCC-eEEEEe----------CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226          233 QAHSEPINALVVADDG-VLYSAS----------DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       233 ~~~~~~v~~~~~~~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      ..+.-.=..+.|-.+| +|+.--          .-..+-|+.++   .   .......-.....|...+|-|.|+.+++-
T Consensus       390 nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir---e---KdIpve~velke~vi~FaWEP~gdkF~vi  463 (698)
T KOG2314|consen  390 NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR---E---KDIPVEVVELKESVIAFAWEPHGDKFAVI  463 (698)
T ss_pred             cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee---c---cCCCceeeecchheeeeeeccCCCeEEEE
Confidence            6554444456666666 443211          11134445444   1   11111112234578889999999877665


Q ss_pred             cC---CCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe---cCCCcEEEEeccCCCceeeEE-Eeeccccc
Q 046226          302 CT---DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG---SADSTSRVWAREQDGRHTMLA-VLVGHRGP  374 (434)
Q Consensus       302 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~  374 (434)
                      +.   ..++.+|.+........+...+......-..+++.|++++.+   +..|.+.++|+...   .+.. ....|. .
T Consensus       464 ~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~eh~-~  539 (698)
T KOG2314|consen  464 SGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPEHF-A  539 (698)
T ss_pred             EccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCcccc-c
Confidence            43   468899988755555555555544332333344457766654   45789999998852   1111 112232 3


Q ss_pred             eeEEEEeecccCCCCCCcccEEEEeec------CCeEEEEecC
Q 046226          375 IRCAIAFLGRFGEETEDEYCTICTGSL------DGVLKMWRVT  411 (434)
Q Consensus       375 v~~~~~~~~~~~~~~~~~~~~l~s~~~------Dg~v~iw~~~  411 (434)
                      .+.+.|.|.         |+|++|++.      |.--+||++.
T Consensus       540 at~veWDPt---------GRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  540 ATEVEWDPT---------GRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             cccceECCC---------CCEEEEeeehhhhccccceEEEEee
Confidence            467889988         999999874      4455677765

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=6.3e-09  Score=87.25  Aligned_cols=157  Identities=14%  Similarity=0.125  Sum_probs=111.4

Q ss_pred             eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226          249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      +-++.+.+..|-+-|+....       ...+. ..+.|.++.|...+++++.|+..|.|..+|++....-.......--|
T Consensus       226 yhfs~G~sqqv~L~nvetg~-------~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh  297 (425)
T KOG2695|consen  226 YHFSVGLSQQVLLTNVETGH-------QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH  297 (425)
T ss_pred             eeecccccceeEEEEeeccc-------ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc
Confidence            33666777778888766111       11222 44678888898889999999999999999998652222221222356


Q ss_pred             ccceEEEE---eeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeE
Q 046226          329 THAVMCLA---SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVL  405 (434)
Q Consensus       329 ~~~v~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v  405 (434)
                      ...|+++.   +++.+|++.+.+|.|.+||++-.+...-+..+.||...-.-+-+.-+       +....|+++|.|...
T Consensus       298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-------~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-------EEEGSIFSVGDDCYT  370 (425)
T ss_pred             CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-------cccceEEEccCeeEE
Confidence            77777764   67889999999999999999876333448899999765544444322       226788889999999


Q ss_pred             EEEecCCCCcccccc
Q 046226          406 KMWRVTRPKSSCGHL  420 (434)
Q Consensus       406 ~iw~~~~~~~~~~~~  420 (434)
                      +||.++.+..++.++
T Consensus       371 RiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  371 RIWSLDSGHLLCTIP  385 (425)
T ss_pred             EEEecccCceeeccC
Confidence            999999887665443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.89  E-value=5.4e-08  Score=83.46  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=102.0

Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226          241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  319 (434)
                      .+..++.+ +++.+..+....+++.+....  ..+...... -....+++.+..+...+..+..-|.++-+|+-....  
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            34455666 666666667766777662221  122222211 122344555555556666655555555444432111  


Q ss_pred             cccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEE-EeeccccceeEEEEeecccCCCCCCcccEE
Q 046226          320 QYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLA-VLVGHRGPIRCAIAFLGRFGEETEDEYCTI  396 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  396 (434)
                      ......-||...++.++++  +++++++..|..|+|-.....   ..+. -.-||..-|..++.-++          ..|
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~~----------~~L  208 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTDN----------YLL  208 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeeccC----------cee
Confidence            1122345899999988885  669999999999999877654   2222 23479999999999886          468


Q ss_pred             EEeecCCeEEEEecCCCCcc
Q 046226          397 CTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       397 ~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      +|||.|++|++||+.+++.+
T Consensus       209 lS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  209 LSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eecCCCCcEEEEecccCCcc
Confidence            99999999999999999876

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.84  E-value=9.9e-08  Score=90.12  Aligned_cols=184  Identities=15%  Similarity=0.182  Sum_probs=142.7

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCce
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAV  180 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      ++..++.|+-...+..+|+.+.+.........+.|.-+..+...+++|...|+|.+-|.++.+.+..+.           
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-----------  214 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD-----------  214 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeee-----------
Confidence            456677787777888889999888877766666688888888899999999999999998887777764           


Q ss_pred             eEEEeccccccCcCCCeEEEEEecCCCEEEEEec---------CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--e
Q 046226          181 RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL---------DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--V  249 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~  249 (434)
                                 .|.+.|.++...  |+.|++++.         |.-|+|||++..+.+..+.-+.++ .-+.|.|.-  .
T Consensus       215 -----------aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~  280 (1118)
T KOG1275|consen  215 -----------AHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTR  280 (1118)
T ss_pred             -----------ccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccce
Confidence                       699999888764  888988875         556899999988877766655554 456777765  8


Q ss_pred             EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE
Q 046226          250 LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH  311 (434)
Q Consensus       250 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  311 (434)
                      ++.++..|...+-|.....+...  -..........+..++++++++.++.|..+|.|.+|.
T Consensus       281 ~~V~S~sGq~q~vd~~~lsNP~~--~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  281 LAVTSQSGQFQFVDTATLSNPPA--GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEEEecccceeeccccccCCCcc--ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            88899999999988442222211  1222233345599999999999999999999999997

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.83  E-value=1.1e-05  Score=71.44  Aligned_cols=212  Identities=10%  Similarity=0.057  Sum_probs=128.6

Q ss_pred             EEEcCCEEEEEeC----------CCeEEEecCCCceeEeeccCCCc-------cEEEEEEeCC--EEEEEE-c-CCeEEE
Q 046226           98 IAVGNGFIYTGSD----------SNVIRIWKQPEFTECGRLKAKTS-------MVVAMEVSHD--RVYAAY-G-DGKIRV  156 (434)
Q Consensus        98 ~~~~~~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~~~~--~l~~~s-~-dg~i~v  156 (434)
                      ++-+++.|+++..          +..|.+||..+.+.+.++.....       .-..++++++  .+++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            4448887777765          78999999999999988875322       2346778887  566555 3 799999


Q ss_pred             eecCCCCCceeeEeee----ccC----------CCCceeEEEeccccccCcCCCeEEE---------EEec-CCCEEEEE
Q 046226          157 WRSTWDNGVKHVKLAT----IPK----------TGGAVRNLIVGKDKMMKHMGPITSI---------AINV-SDDTLYSA  212 (434)
Q Consensus       157 wd~~~~~~~~~~~~~~----~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~---------~~~~-~~~~l~s~  212 (434)
                      .|+..++.+..+....    .+.          .+.....-.........+..++..-         .|.+ +++++++.
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            9999988877665421    000          0000000000000000001111000         2344 78888877


Q ss_pred             ecCCcEEEEEcCC-----CeeEEEccc-------CccCeEEEEEcCCC-eEEEEe----------CCCeEEEEecccccC
Q 046226          213 SLDKTIKVWRIRD-----SKCIETIQA-------HSEPINALVVADDG-VLYSAS----------DDATVRVWRRYFYSE  269 (434)
Q Consensus       213 ~~dg~i~vwd~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~-~l~s~~----------~dg~i~iwd~~~~~~  269 (434)
                      .+ |.|.+.|+..     .+.+..+..       ..+.+.-+++++++ +++...          ..+.|.++|..    
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~----  287 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK----  287 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC----
Confidence            76 9999999643     233332211       23344559999998 555532          22579999876    


Q ss_pred             cceeEEEEEecccccCeEEEEEecCCC-EEEEEc-CCCeEEEEEcCcccc
Q 046226          270 NQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGGC-TDGYIHYWHKGWFSA  317 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~  317 (434)
                        ..+.+..+.. ...+..++++||++ +|++.. .++.|.++|..+.+.
T Consensus       288 --t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       288 --TGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             --CCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence              3333333332 35788999999999 888776 578899999865443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.2e-07  Score=80.96  Aligned_cols=292  Identities=14%  Similarity=0.110  Sum_probs=182.4

Q ss_pred             eccccEEEEEE-cCCEEEEEeCCCeEEEecCCC---ceeEeeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCC
Q 046226           90 KKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPE---FTECGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWD  162 (434)
Q Consensus        90 ~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~  162 (434)
                      -|.+.|+.+.. ..+++.+++.||.++.|.-..   -+.+..+..|-..|.+++.+-+  .+.+.+. |..++++|+..-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            38888988888 889999999999999997433   2344556678888888888887  4445455 899999999877


Q ss_pred             CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC--CEEEE-EecCCcEEEEEcCCCe--eEEEcccCcc
Q 046226          163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD--DTLYS-ASLDKTIKVWRIRDSK--CIETIQAHSE  237 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s-~~~dg~i~vwd~~~~~--~~~~~~~~~~  237 (434)
                      ..+..+++..+|..                    +..+ .++..  ..+++ .-.+|.|.++|-...-  ....-+-|..
T Consensus        87 DminmiKL~~lPg~--------------------a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s  145 (558)
T KOG0882|consen   87 DMINMIKLVDLPGF--------------------AEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS  145 (558)
T ss_pred             chhhhcccccCCCc--------------------eEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence            66655554443321                    1111 11111  12333 3457889999975433  3333445899


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEeccc----ccCcc-----eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeE
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWRRYF----YSENQ-----LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYI  307 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  307 (434)
                      +|.++.+++-+ .+++....|.|.-|....    .....     ....+..+........++.|+|++..+.+-..|..|
T Consensus       146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV  225 (558)
T KOG0882|consen  146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV  225 (558)
T ss_pred             ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEE
Confidence            99999999988 888888899999997651    00000     011112222334567899999999999999999999


Q ss_pred             EEEEcCcccccccccC----------------------------cccCcccce-EEEEe--eCCEEEEecCCCcEEEEec
Q 046226          308 HYWHKGWFSAQLQYGG----------------------------ALQGHTHAV-MCLAS--VANYVISGSADSTSRVWAR  356 (434)
Q Consensus       308 ~i~d~~~~~~~~~~~~----------------------------~~~~~~~~v-~~~~~--~~~~l~s~~~dg~i~iwd~  356 (434)
                      +++++.+.+...++..                            .+..|...+ +.+.|  ++++|+-|+-=| |++.++
T Consensus       226 R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~  304 (558)
T KOG0882|consen  226 RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINL  304 (558)
T ss_pred             EEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEe
Confidence            9999876543322211                            111222111 22233  477888776544 788888


Q ss_pred             cCCCceeeEEEeecccccee------------------EEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226          357 EQDGRHTMLAVLVGHRGPIR------------------CAIAFLGRFGEETEDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       357 ~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw  408 (434)
                      .++   .+++.+. ....|+                  .++.+.+. ...+.++..+++++-....++++
T Consensus       305 ~tn---~v~ri~g-k~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  305 DTN---TVVRILG-KDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             ecC---eEEEEec-cchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCCCCeEEEeeeecceEEEE
Confidence            886   3333321 111111                  11112111 11234446677888788888888

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=2.5e-08  Score=57.97  Aligned_cols=38  Identities=21%  Similarity=0.384  Sum_probs=36.3

Q ss_pred             eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      +++..+.+|.+.|++++|+|+         +.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~---------~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPD---------GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETT---------SSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecc---------cccceeeCCCCEEEEEC
Confidence            678899999999999999999         89999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.80  E-value=5.4e-08  Score=80.63  Aligned_cols=212  Identities=16%  Similarity=0.198  Sum_probs=139.0

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-----eEEEcccCc------------cCeEEEEEcCCC---eEEE
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-----CIETIQAHS------------EPINALVVADDG---VLYS  252 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~---~l~s  252 (434)
                      ....|+++.|...|.+|++|...|.|.++.-+...     ....+++|.            ..|..+.|..++   .++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45679999999999999999999999999765432     223345443            357788887655   7888


Q ss_pred             EeCCCeEEEEeccccc------------------C-------------cceeEEEE------EecccccCeEEEEEecCC
Q 046226          253 ASDDATVRVWRRYFYS------------------E-------------NQLHTLIL------TLTAKYSPVKTLTLTLDD  295 (434)
Q Consensus       253 ~~~dg~i~iwd~~~~~------------------~-------------~~~~~~~~------~~~~~~~~v~~~~~~~~~  295 (434)
                      .+.|.+|++|.++...                  +             ......+.      ....|...+.++.+..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            8899999999876220                  0             00000010      113466678899999888


Q ss_pred             CEEEEEcCCCeEEEEEcCcccccccccCcccCcc-----cceEEEEeeC---CEEEEecCCCcEEEEeccCCCce---ee
Q 046226          296 GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT-----HAVMCLASVA---NYVISGSADSTSRVWAREQDGRH---TM  364 (434)
Q Consensus       296 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~---~~  364 (434)
                      ..++++ .|=.|.+|++.......... .++.|.     .-|++..|++   +.+.-.+..|.|++-|++.....   ..
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            877765 46789999986544433322 112222     2345555653   46777778999999999843100   00


Q ss_pred             ----------EEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          365 ----------LAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       365 ----------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                                ..-+.+-...|..+.|+++         |++|++-+. -+|+|||++..+..
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~n---------gryIlsRdy-ltvkiwDvnm~k~p  314 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDN---------GRYILSRDY-LTVKIWDVNMAKNP  314 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCC---------CcEEEEecc-ceEEEEecccccCC
Confidence                      0111222346788999998         899988765 58999999987754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.79  E-value=4.2e-05  Score=65.71  Aligned_cols=207  Identities=15%  Similarity=0.070  Sum_probs=121.8

Q ss_pred             EEEEeC-C-EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe
Q 046226          137 AMEVSH-D-RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS  213 (434)
Q Consensus       137 ~l~~~~-~-~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  213 (434)
                      +..|.+ + .|+... ..+.|..|+...+.... +                        .......+++...+..|+.+.
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~------------------------~~~~~~G~~~~~~~g~l~v~~   58 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-I------------------------DLPGPNGMAFDRPDGRLYVAD   58 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-E------------------------ESSSEEEEEEECTTSEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-E------------------------ecCCCceEEEEccCCEEEEEE
Confidence            467776 3 444444 47888888876542211 1                        111267778873345566666


Q ss_pred             cCCcEEEEEcCCCeeEEEccc-----CccCeEEEEEcCCC-eEEEEeCC--------CeEEEEecccccCcceeEEEEEe
Q 046226          214 LDKTIKVWRIRDSKCIETIQA-----HSEPINALVVADDG-VLYSASDD--------ATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       214 ~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      .++ +.++|..+++.......     .....+.+++.++| +.++....        |.|..++..    ....    ..
T Consensus        59 ~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~----~~  129 (246)
T PF08450_consen   59 SGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVT----VV  129 (246)
T ss_dssp             TTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEE----EE
T ss_pred             cCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEE----EE
Confidence            544 56669988864433332     34578899999999 44444432        445555533    1111    11


Q ss_pred             cccccCeEEEEEecCCCEEE-EEcCCCeEEEEEcCccccccc---ccCcccCcccceEEEEee--CCEEEEecCCCcEEE
Q 046226          280 TAKYSPVKTLTLTLDDGLLY-GGCTDGYIHYWHKGWFSAQLQ---YGGALQGHTHAVMCLASV--ANYVISGSADSTSRV  353 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~i  353 (434)
                      .......+.|+|+|+++.|+ +-+..+.|..|++........   ....+.......-.++++  |++.++....+.|.+
T Consensus       130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~  209 (246)
T PF08450_consen  130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV  209 (246)
T ss_dssp             EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred             ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence            22235678999999998776 556788999999864332111   111222222235556665  677777777899999


Q ss_pred             EeccCCCceeeEEEeeccccceeEEEEe
Q 046226          354 WAREQDGRHTMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       354 wd~~~~~~~~~~~~~~~h~~~v~~~~~~  381 (434)
                      +|.+ +   +.+..+..-...+++++|.
T Consensus       210 ~~p~-G---~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  210 FDPD-G---KLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             EETT-S---CEEEEEE-SSSSEEEEEEE
T ss_pred             ECCC-c---cEEEEEcCCCCCEEEEEEE
Confidence            9987 5   4555554444578999994

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.79  E-value=2.5e-06  Score=78.80  Aligned_cols=144  Identities=14%  Similarity=0.151  Sum_probs=95.3

Q ss_pred             cEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeecc-CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226           94 QILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLK-AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKL  170 (434)
Q Consensus        94 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~  170 (434)
                      ..+|++..+++++.|+.-|.+++|+-..++....-. +..+.+..+..+++  .+++|+..|.|.++-+..........+
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            456777799999999999999999976655433222 23444555566665  667777889999987765322222111


Q ss_pred             eeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC----eeEEEcccCccCeEEEEEcC
Q 046226          171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS----KCIETIQAHSEPINALVVAD  246 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~  246 (434)
                      ..          ..      ..|...|++++|++++..+++|...|.|..-.+.+.    -..+.+-.....|..+....
T Consensus       117 t~----------~d------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q  180 (726)
T KOG3621|consen  117 TP----------CD------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ  180 (726)
T ss_pred             cc----------cc------ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence            11          11      138899999999999999999999999999888762    11222223455677777663


Q ss_pred             CCeEEEE
Q 046226          247 DGVLYSA  253 (434)
Q Consensus       247 ~~~l~s~  253 (434)
                      .-+|++.
T Consensus       181 ~~LLVSt  187 (726)
T KOG3621|consen  181 SYLLVST  187 (726)
T ss_pred             ceehHhh
Confidence            3244433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=3e-08  Score=57.64  Aligned_cols=37  Identities=27%  Similarity=0.583  Sum_probs=35.2

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK  118 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd  118 (434)
                      ++++.++.+|.+.|++|+|  ++++|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5789999999999999999  889999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.76  E-value=2.9e-05  Score=73.60  Aligned_cols=273  Identities=10%  Similarity=0.042  Sum_probs=154.2

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCc------cE--EEEEEeC-CEEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS------MV--VAMEVSH-DRVYAAYGDGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~------~v--~~l~~~~-~~l~~~s~dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      .++.++.++.++.|.-.|..+++.+.++.....      .+  ..+.+.. +.++.++.++.|..+|.++++.+......
T Consensus        60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            566778888899999999999988877654322      11  1233444 78899999999999999988877666432


Q ss_pred             eccCCCCceeEEEeccccccCcCCCeE-EEEEecCCCEEEEEe---------cCCcEEEEEcCCCeeEEEcccCccC---
Q 046226          172 TIPKTGGAVRNLIVGKDKMMKHMGPIT-SIAINVSDDTLYSAS---------LDKTIKVWRIRDSKCIETIQAHSEP---  238 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~---  238 (434)
                      ....                 ....+. ...+.  +..++.++         .+|.|..+|..+|+.+..+......   
T Consensus       140 ~~~~-----------------~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~  200 (488)
T cd00216         140 DQVP-----------------PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA  200 (488)
T ss_pred             CCcC-----------------cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC
Confidence            1000                 000000 01111  23444443         4688999999999988877542110   


Q ss_pred             -----------------e-EEEEEcCC-CeEEEEeCCC------------------eEEEEecccccCcceeEEEEEe--
Q 046226          239 -----------------I-NALVVADD-GVLYSASDDA------------------TVRVWRRYFYSENQLHTLILTL--  279 (434)
Q Consensus       239 -----------------v-~~~~~~~~-~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~--  279 (434)
                                       + ....+.+. +.++.++.++                  .|.-+|+.  +++.........  
T Consensus       201 ~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~--tG~~~W~~~~~~~~  278 (488)
T cd00216         201 FPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD--TGKVKWFYQTTPHD  278 (488)
T ss_pred             CCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC--CCCEEEEeeCCCCC
Confidence                             1 12333433 4777777665                  57777766  333333321110  


Q ss_pred             ----cccccCe-EEEEEecCCC---EEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe------
Q 046226          280 ----TAKYSPV-KTLTLTLDDG---LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG------  345 (434)
Q Consensus       280 ----~~~~~~v-~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~------  345 (434)
                          .....++ ..+. .-++.   .+++++.+|.+..+|..+.+...+....       ...++.+++.++.+      
T Consensus       279 ~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~~~vyv~~~~~~~  350 (488)
T cd00216         279 LWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYDPGLVYLGAFHIPL  350 (488)
T ss_pred             CcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccCCceEEEccccccc
Confidence                0000111 1110 01333   6788889999999998877665543211       01112222333332      


Q ss_pred             ------------cCCCcEEEEeccCCCceeeEEEeecc--c------cce--eEEEEeecccCCCCCCcccEEEEeecCC
Q 046226          346 ------------SADSTSRVWAREQDGRHTMLAVLVGH--R------GPI--RCAIAFLGRFGEETEDEYCTICTGSLDG  403 (434)
Q Consensus       346 ------------~~dg~i~iwd~~~~~~~~~~~~~~~h--~------~~v--~~~~~~~~~~~~~~~~~~~~l~s~~~Dg  403 (434)
                                  ..+|.+.-.|+.+++   .+-.....  .      .+.  ..++..           +.+|+.++.||
T Consensus       351 ~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~-----------g~~v~~g~~dG  416 (488)
T cd00216         351 GLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATA-----------GNLVFAGAADG  416 (488)
T ss_pred             cCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEec-----------CCeEEEECCCC
Confidence                        246778888888873   33322211  1      111  112222           56888999999


Q ss_pred             eEEEEecCCCCcc
Q 046226          404 VLKMWRVTRPKSS  416 (434)
Q Consensus       404 ~v~iw~~~~~~~~  416 (434)
                      .|+.+|..+++.+
T Consensus       417 ~l~ald~~tG~~l  429 (488)
T cd00216         417 YFRAFDATTGKEL  429 (488)
T ss_pred             eEEEEECCCCcee
Confidence            9999999988765

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=8e-07  Score=83.15  Aligned_cols=187  Identities=11%  Similarity=0.105  Sum_probs=125.2

Q ss_pred             CccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE
Q 046226          132 TSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS  211 (434)
Q Consensus       132 ~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  211 (434)
                      ...+.|++++...++.|+.+|.|++.+....- ...+                       .|...      ..+|.++++
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~-----------------------~~s~~------~~~Gey~as   88 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNF-----------------------DHSSS------ILEGEYVAS   88 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCcc-cccc-----------------------ccccc------ccCCceEEE
Confidence            34577788888889999999999998764321 1111                       23332      457999999


Q ss_pred             EecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC------CeEEEEeCCCeEEEEecccccCcceeEEEEEecccccC
Q 046226          212 ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD------GVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSP  285 (434)
Q Consensus       212 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  285 (434)
                      |+.||.|.|-.+-+.+...++. -..++.+++++|+      +++++|+.-| +.++.-+..+.....    ......++
T Consensus        89 CS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v----~l~~~eG~  162 (846)
T KOG2066|consen   89 CSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV----VLSEGEGP  162 (846)
T ss_pred             ecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce----eeecCccc
Confidence            9999999999998887766665 4568999999998      2899999988 888765533222211    45566789


Q ss_pred             eEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCccc--CcccceEEEEeeC-CEEEEecCCCcEEEEeccC
Q 046226          286 VKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ--GHTHAVMCLASVA-NYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       286 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~  358 (434)
                      |.++.|.  |+++|-+..+| |++||.............-.  ....-...+.|.. ..|+.|- ..+|+|..++.
T Consensus       163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW-~d~v~i~~I~~  234 (846)
T KOG2066|consen  163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW-GDSVKICSIKK  234 (846)
T ss_pred             eEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec-CCeEEEEEEec
Confidence            9999995  67888777776 99999865443322111100  0111123455654 4566664 44788888873

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=6.5e-07  Score=83.70  Aligned_cols=186  Identities=15%  Similarity=0.165  Sum_probs=125.9

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ  271 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~  271 (434)
                      ....+.|++++  ++.|+-|+.+|.|++++... .. .+...|...      .-+| ++++|+.||+|.|..+....   
T Consensus        38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~---  104 (846)
T KOG2066|consen   38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD---  104 (846)
T ss_pred             hhhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc---
Confidence            44567777775  78999999999999999753 33 333334433      4456 99999999999998765211   


Q ss_pred             eeEEEEEecccccCeEEEEEecC-----CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEec
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLD-----DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGS  346 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~  346 (434)
                         ..... ....++.+++++|+     .+.+++|+..| +.++.-+........  .+....++|.++.|.|+++|-++
T Consensus       105 ---~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~g~lIAWan  177 (846)
T KOG2066|consen  105 ---EITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWRGNLIAWAN  177 (846)
T ss_pred             ---cceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEecCcEEEEec
Confidence               11111 23468999999997     56899999988 888864433222221  34456689999999999999998


Q ss_pred             CCCcEEEEeccCCCceeeEEEeeccccce------eEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          347 ADSTSRVWAREQDGRHTMLAVLVGHRGPI------RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v------~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      ++| |++||+..+   +.+..++.....+      ..+.|.++          ..|+.| ...+|+|..+..+
T Consensus       178 d~G-v~vyd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~----------~~LVIG-W~d~v~i~~I~~~  235 (846)
T KOG2066|consen  178 DDG-VKVYDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDE----------DRLVIG-WGDSVKICSIKKR  235 (846)
T ss_pred             CCC-cEEEecccc---ceeeccCCCCCCCCcccCCCceEecCC----------CeEEEe-cCCeEEEEEEecc
Confidence            776 899999887   4444433322322      23666654          345555 4458999998833

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=2e-06  Score=81.19  Aligned_cols=202  Identities=15%  Similarity=0.209  Sum_probs=133.3

Q ss_pred             EEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC-eEEEEEcCCC-eEEEEeCCC-----eEEEEecccccCccee
Q 046226          201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP-INALVVADDG-VLYSASDDA-----TVRVWRRYFYSENQLH  273 (434)
Q Consensus       201 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~  273 (434)
                      +|++.+..++.|+.+|.|.+.+- ..+.++.++.+... |..+....+. .|++.+.|+     .+++||+.........
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            35678899999999999988873 44556788887776 5555555453 788777664     4899999844333312


Q ss_pred             EEE---E----EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEE
Q 046226          274 TLI---L----TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVIS  344 (434)
Q Consensus       274 ~~~---~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s  344 (434)
                      ...   .    .......++.+++++.+-+.+++|-.+|.|..+.=+-.........-......+|+++.+.  +..++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            222   1    1122356889999999999999999999999985321111111111122334689998874  554333


Q ss_pred             ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          345 GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ...-..|.+|.+... . .....+..|...+.|..+++..        +++++++  +..|.+|+.+..++
T Consensus       189 v~Tt~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t--------~qfIca~--~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGT--------YQFICAG--SEFLYFYDSDGRGP  247 (933)
T ss_pred             EEecceeEEEEecCC-C-cceeeeccCCccceeeecCCCC--------ccEEEec--CceEEEEcCCCcce
Confidence            334568999999843 2 3455678888899999999873        3344444  34799999875443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.70  E-value=2.8e-05  Score=68.74  Aligned_cols=139  Identities=17%  Similarity=0.120  Sum_probs=103.6

Q ss_pred             EEEeeccccEEEEEE--cCCEEEEEeCCC-eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC
Q 046226           86 SSVLKKDGQILCIAV--GNGFIYTGSDSN-VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST  160 (434)
Q Consensus        86 ~~~~~h~~~v~~~~~--~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~  160 (434)
                      ..-.+|.+.|.-..+  +++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+++  .++++.....+.+.|++
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            334568888888888  777899999999 999999877664 445556778999999998  57777777888888988


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC----cEEEEEcCCCeeEEEcccCc
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK----TIKVWRIRDSKCIETIQAHS  236 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~  236 (434)
                      +++....-+                      ...+-|+.+.|+|+++++|-+--+|    .|+++|+..++...... ..
T Consensus       432 ngnv~~idk----------------------S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t  488 (668)
T COG4946         432 NGNVRLIDK----------------------SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT  488 (668)
T ss_pred             CCCeeEecc----------------------cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc
Confidence            765422221                      3566799999999999999775554    79999999887654433 33


Q ss_pred             cCeEEEEEcCCC
Q 046226          237 EPINALVVADDG  248 (434)
Q Consensus       237 ~~v~~~~~~~~~  248 (434)
                      +.=.+-+|.|++
T Consensus       489 a~DfsPaFD~d~  500 (668)
T COG4946         489 AYDFSPAFDPDG  500 (668)
T ss_pred             ccccCcccCCCC
Confidence            333456777887

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.70  E-value=1.7e-05  Score=65.81  Aligned_cols=192  Identities=14%  Similarity=0.118  Sum_probs=110.6

Q ss_pred             cEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccC-------CCccEEEEEEeCC--------EEEEEEcCCeEEE
Q 046226           94 QILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKA-------KTSMVVAMEVSHD--------RVYAAYGDGKIRV  156 (434)
Q Consensus        94 ~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~~~~--------~l~~~s~dg~i~v  156 (434)
                      .=.-++|  |+.+||.+...|+|+++|+.. ..+..+..       -...|..+.|.+.        .|++...+|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            3456778  899999999999999999865 33334332       1346667766542        5677777888777


Q ss_pred             eecCCC--CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226          157 WRSTWD--NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       157 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  234 (434)
                      |-+..+  +.........+                ...+...|.++.++|..++|++|+....      +++.    -++
T Consensus       124 y~vs~gt~q~y~e~hsfsf----------------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a  177 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSF----------------SSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKA  177 (282)
T ss_pred             EEEEcccCCcceeeEEEEe----------------cccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccc
Confidence            765322  11111100000                0135678999999999998888765432      1100    011


Q ss_pred             CccCeEEEEEcCCC---eEEEEeCCCeE------EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226          235 HSEPINALVVADDG---VLYSASDDATV------RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG  305 (434)
Q Consensus       235 ~~~~v~~~~~~~~~---~l~s~~~dg~i------~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  305 (434)
                      ....+++-.+-.+.   ..++...|+..      .+|.+-      ..............|..+..+|||..|++...+|
T Consensus       178 ~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~------~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG  251 (282)
T PF15492_consen  178 SSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIP------SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG  251 (282)
T ss_pred             cccCceEEEEcCCCCcEEEccccCccccccccccceeecc------ceeeeeccccCCCceEEEEECCCCCEEEEEEcCC
Confidence            22233333332222   22233322221      222211      1111112233456899999999999999999999


Q ss_pred             eEEEEEcCccccc
Q 046226          306 YIHYWHKGWFSAQ  318 (434)
Q Consensus       306 ~i~i~d~~~~~~~  318 (434)
                      .|.+|++......
T Consensus       252 ~lsLW~iPsL~~~  264 (282)
T PF15492_consen  252 SLSLWEIPSLRLQ  264 (282)
T ss_pred             eEEEEecCcchhh
Confidence            9999998654433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.70  E-value=8.3e-09  Score=96.87  Aligned_cols=196  Identities=15%  Similarity=0.171  Sum_probs=136.1

Q ss_pred             cceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCC-e
Q 046226           80 SSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDG-K  153 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg-~  153 (434)
                      ..|+..++|..|+..-+|++|  +.+.|++|+..|.|+++++.+|.......+|..+|+.+..+.+   .|.+++... -
T Consensus      1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence            446667788899999999999  7889999999999999999999999999999999999998876   344444433 6


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc-CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH-MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI  232 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  232 (434)
                      ..+|++..-...                          .| ...-.++.|+.....-+.|+......+||++++..+.++
T Consensus      1169 saLW~~~s~~~~--------------------------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1169 SALWDASSTGGP--------------------------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred             HHHhccccccCc--------------------------cccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence            789987532111                          12 234567888766555555665567899999999877664


Q ss_pred             cc----CccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEE
Q 046226          233 QA----HSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIH  308 (434)
Q Consensus       233 ~~----~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  308 (434)
                      -.    ....-++..|+|+..|+.  .||  .+||++..      ..+..+.... .--.-.|+|.|..++.-++     
T Consensus      1223 lt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~------~aIh~FD~ft-~~~~G~FHP~g~eVIINSE----- 1286 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIP------EAIHRFDQFT-DYGGGGFHPSGNEVIINSE----- 1286 (1516)
T ss_pred             cCcchhhhhhccccccCCCcceEe--eCc--eeeeeccH------HHHhhhhhhe-ecccccccCCCceEEeech-----
Confidence            22    222336788999884443  455  47998822      2222222111 1112358999998888664     


Q ss_pred             EEEcCcccc
Q 046226          309 YWHKGWFSA  317 (434)
Q Consensus       309 i~d~~~~~~  317 (434)
                      |||+++...
T Consensus      1287 IwD~RTF~l 1295 (1516)
T KOG1832|consen 1287 IWDMRTFKL 1295 (1516)
T ss_pred             hhhhHHHHH
Confidence            899876543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.68  E-value=8.6e-06  Score=79.96  Aligned_cols=219  Identities=12%  Similarity=0.127  Sum_probs=133.0

Q ss_pred             eccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc
Q 046226           90 KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV  165 (434)
Q Consensus        90 ~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~  165 (434)
                      .-++.|.++.|  +++-++.+..+|.|.+-|.++..... ...-...|.+++|+||  .++.++.++++.+-+-.. ..+
T Consensus        66 ~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f-~~i  143 (1265)
T KOG1920|consen   66 DGDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF-EPI  143 (1265)
T ss_pred             CCCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc-cch
Confidence            34578999999  88888889999999999887754322 2223567999999998  777778878777654311 111


Q ss_pred             eeeEee-ecc-----CC---CCceeEEEeccc-----------cccC---cCCCeEEEEEecCCCEEEEE-----ecCCc
Q 046226          166 KHVKLA-TIP-----KT---GGAVRNLIVGKD-----------KMMK---HMGPITSIAINVSDDTLYSA-----SLDKT  217 (434)
Q Consensus       166 ~~~~~~-~~~-----~~---~~~~~~~~~~~~-----------~~~~---~~~~v~~~~~~~~~~~l~s~-----~~dg~  217 (434)
                      ....+. ...     ..   |..-..+.....           +..+   ..+.=+.|.|-.||.++++.     .....
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            111110 000     00   000001110000           0000   11223468999999999873     32378


Q ss_pred             EEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEE---eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec
Q 046226          218 IKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSA---SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL  293 (434)
Q Consensus       218 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  293 (434)
                      |++||-+ |..-..-....+.-.+++|-|.| ++++-   ..|+.|.+|..+   +................+..++|+.
T Consensus       224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN---GL~hg~f~l~~p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN---GLRHGEFVLPFPLDEKEVEELAWNS  299 (1265)
T ss_pred             EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC---CccccccccCCcccccchheeeecC
Confidence            9999976 44332222233445689999998 66654   356679999755   2223333334444445699999999


Q ss_pred             CCCEEEE---EcCCCeEEEEEcCc
Q 046226          294 DDGLLYG---GCTDGYIHYWHKGW  314 (434)
Q Consensus       294 ~~~~l~~---~~~dg~i~i~d~~~  314 (434)
                      ++..|++   ......|++|-+..
T Consensus       300 ~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  300 NSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             CCCceeeeecccccceEEEEEecC
Confidence            9999988   55556699998654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.6e-06  Score=74.65  Aligned_cols=255  Identities=12%  Similarity=0.079  Sum_probs=145.5

Q ss_pred             EEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226          114 IRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM  190 (434)
Q Consensus       114 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
                      |++.+..+.+...-+..+...|.+++|+|.   .+..++.+..|+|.|+++...+..+.                     
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---------------------  233 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---------------------  233 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---------------------
Confidence            666666666666667788899999999995   57888999999999998776665553                     


Q ss_pred             cCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCe-eEEEccc--CccCeEEEEEc------CCC-eEEEEeCCCeE
Q 046226          191 MKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSK-CIETIQA--HSEPINALVVA------DDG-VLYSASDDATV  259 (434)
Q Consensus       191 ~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~--~~~~v~~~~~~------~~~-~l~s~~~dg~i  259 (434)
                       .+ ..+++++|.-+ ..+++.|..+|.|.+||++..+ .+..+.+  ...+|..++.-      +.+ +++....+  +
T Consensus       234 -a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l  309 (463)
T KOG1645|consen  234 -AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--L  309 (463)
T ss_pred             -cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--h
Confidence             24 78999999876 4678889999999999998643 2222222  22344444332      223 44444432  5


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCC------e----------EEEEEcCccccccccc
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDG------Y----------IHYWHKGWFSAQLQYG  322 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg------~----------i~i~d~~~~~~~~~~~  322 (434)
                      ..|++....+  ...... ..+..+.+.++.+.+..+.++.. -.+.      .          -.||..+.... ..  
T Consensus       310 ~f~ei~~s~~--~~p~vl-ele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~-Gs--  383 (463)
T KOG1645|consen  310 QFYEIVFSAE--CLPCVL-ELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF-GS--  383 (463)
T ss_pred             hhhhhhcccc--CCCccc-ccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc-CC--
Confidence            5676542111  111111 11223455566666644444333 2211      0          11221110000 00  


Q ss_pred             CcccCccc-ceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226          323 GALQGHTH-AVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       323 ~~~~~~~~-~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                      ...+-+.. .+.+. .+.+ .+..|+.-+.+.+||..+.   ..++.+.- ..+|.++.....+       .+.+|++-.
T Consensus       384 ~~~kl~t~~ai~~~-~~nn~iv~~gd~tn~lil~D~~s~---evvQ~l~~-~epv~Dicp~~~n-------~~syLa~LT  451 (463)
T KOG1645|consen  384 KQTKLSTTQAIRAV-EDNNYIVVVGDSTNELILQDPHSF---EVVQTLAL-SEPVLDICPNDTN-------GSSYLALLT  451 (463)
T ss_pred             cccccccccceecc-ccccEEEEecCCcceeEEeccchh---heeeeccc-CcceeecceeecC-------Ccchhhhee
Confidence            00001111 11111 1234 4455666789999999987   66666654 4788777766542       145666665


Q ss_pred             cCCeEEEEecCC
Q 046226          401 LDGVLKMWRVTR  412 (434)
Q Consensus       401 ~Dg~v~iw~~~~  412 (434)
                       |..++|+..++
T Consensus       452 -d~~v~Iyk~es  462 (463)
T KOG1645|consen  452 -DDRVHIYKNES  462 (463)
T ss_pred             -cceEEEEecCC
Confidence             56889887654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.65  E-value=7.4e-07  Score=84.44  Aligned_cols=149  Identities=11%  Similarity=0.217  Sum_probs=117.2

Q ss_pred             cccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEc---------CCeEEEeecCCC
Q 046226           92 DGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYG---------DGKIRVWRSTWD  162 (434)
Q Consensus        92 ~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~---------dg~i~vwd~~~~  162 (434)
                      .+.|+-|+.+++++.+|...|+|.+-|..+.+.+.++.+|.+.|.++....+.|++++.         |.-|+|||++.-
T Consensus       177 a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  177 ASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             CCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhh
Confidence            34577778899999999999999999999999999999999999999999999998875         677899999876


Q ss_pred             CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCC---C-eeEEEcccCcc
Q 046226          163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRD---S-KCIETIQAHSE  237 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~---~-~~~~~~~~~~~  237 (434)
                      ..+..+.+                      +.+ -.-+.|+|. ...+++++..|...+-|..+   . .-+..+.....
T Consensus       257 ral~PI~~----------------------~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s  313 (1118)
T KOG1275|consen  257 RALSPIQF----------------------PYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS  313 (1118)
T ss_pred             hccCCccc----------------------ccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence            66555532                      112 244566775 45678888899999998432   2 12333333455


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWR  263 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd  263 (434)
                      .+..+++++++ .++.|..+|.|.+|-
T Consensus       314 ~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  314 GISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cceeEEecCCCceEEEecccCcEeeec
Confidence            69999999999 999999999999996

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.62  E-value=6.2e-05  Score=74.22  Aligned_cols=238  Identities=11%  Similarity=0.034  Sum_probs=140.9

Q ss_pred             CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE
Q 046226          131 KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT  208 (434)
Q Consensus       131 ~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  208 (434)
                      ....|.++.|..+  .++.+..+|.|.+-|..+......-                       .-...|.+++|+||+..
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg-----------------------~vd~GI~aaswS~Dee~  123 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG-----------------------NVDNGISAASWSPDEEL  123 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccceeeee-----------------------eccCceEEEeecCCCcE
Confidence            3468999999875  7888899999999876544221111                       25567999999999999


Q ss_pred             EEEEecCCcEEEEEcC----C-------------------CeeEEEcccC---------------------ccCeEEEEE
Q 046226          209 LYSASLDKTIKVWRIR----D-------------------SKCIETIQAH---------------------SEPINALVV  244 (434)
Q Consensus       209 l~s~~~dg~i~vwd~~----~-------------------~~~~~~~~~~---------------------~~~v~~~~~  244 (434)
                      ++..+.++++.+-+-.    .                   |+.-..|.+.                     .+.=..|.|
T Consensus       124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW  203 (1265)
T KOG1920|consen  124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW  203 (1265)
T ss_pred             EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE
Confidence            9999887877765431    1                   1111112211                     111235899


Q ss_pred             cCCC-eEEEE----eCC-CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE---cCCCeEEEEEcCcc
Q 046226          245 ADDG-VLYSA----SDD-ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG---CTDGYIHYWHKGWF  315 (434)
Q Consensus       245 ~~~~-~l~s~----~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~  315 (434)
                      ..|| ++++.    ..+ ..|++||..       ..+...-....+.-.+++|-|.|..+++-   ..|+.|.+|.-+..
T Consensus       204 RgDg~~fAVs~~~~~~~~RkirV~drE-------g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  204 RGDGEYFAVSFVESETGTRKIRVYDRE-------GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             ccCCcEEEEEEEeccCCceeEEEeccc-------chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence            9999 65552    234 789999854       11111112222344679999999988875   34667999974322


Q ss_pred             cccccccCcccCcccceEEEEee--CCEEEE---ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCC
Q 046226          316 SAQLQYGGALQGHTHAVMCLASV--ANYVIS---GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETE  390 (434)
Q Consensus       316 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  390 (434)
                      . ...+.-.+......+..+.|+  ++.|++   ......|++|-+.+- .+...+.+.-.....  +.|+|..      
T Consensus       277 ~-hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny-hWYLKq~l~~~~~~~--~~W~p~~------  346 (1265)
T KOG1920|consen  277 R-HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY-HWYLKQELQFSQKAL--LMWDPVT------  346 (1265)
T ss_pred             c-ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe-EEEEEEEEecccccc--ccccCCC------
Confidence            1 222222333444458889997  456666   455556999998765 233333333333222  6666653      


Q ss_pred             CcccEEEEeecCCeEEEEec
Q 046226          391 DEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       391 ~~~~~l~s~~~Dg~v~iw~~  410 (434)
                        ...|..-..+|.+.++++
T Consensus       347 --~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  347 --EKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             --ceeEEEEecCCcEEEEEE
Confidence              233333335555544443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=3e-05  Score=73.55  Aligned_cols=203  Identities=12%  Similarity=0.166  Sum_probs=133.3

Q ss_pred             cEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCcc-EEEEEEeCC--EEEEEEcCC-----eEEEeecCCCCCc
Q 046226           94 QILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSM-VVAMEVSHD--RVYAAYGDG-----KIRVWRSTWDNGV  165 (434)
Q Consensus        94 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~--~l~~~s~dg-----~i~vwd~~~~~~~  165 (434)
                      .|.|++-.+..+|.|+.+|.|.+.+ ...+.+..++.+... |..+....+  .|++.+.|+     .++||+++..+.-
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            7888888999999999999998887 455666778887777 555554444  677777654     5899998754221


Q ss_pred             eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC----CeeEEEcccCccCeEE
Q 046226          166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD----SKCIETIQAHSEPINA  241 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~  241 (434)
                      ..         ...+...............++.+++.+.+-+.+++|-.+|.|..+.-+-    +....-......+|+.
T Consensus       106 ~s---------P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg  176 (933)
T KOG2114|consen  106 NS---------PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG  176 (933)
T ss_pred             CC---------cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence            10         0011000110001112466889999999999999999999999885321    1211222234679999


Q ss_pred             EEEcCCC-e-EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          242 LVVADDG-V-LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       242 ~~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      +++..++ . ++++ .-..|.+|.+.   +..  .....+..+...+.|..+++....+++++ +..+.+||..
T Consensus       177 L~~~~d~~s~lFv~-Tt~~V~~y~l~---gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd  243 (933)
T KOG2114|consen  177 LALRSDGKSVLFVA-TTEQVMLYSLS---GRT--PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSD  243 (933)
T ss_pred             eEEecCCceeEEEE-ecceeEEEEec---CCC--cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCC
Confidence            9999888 3 3443 34568899876   211  23444667778889999987666466655 4569999865

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.55  E-value=8.4e-05  Score=64.38  Aligned_cols=274  Identities=12%  Similarity=0.110  Sum_probs=153.7

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------cCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------GDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      +.+.|+|..+++.+..+..  +..-.+..+|+  .+++++          ....|.+||..+-.....+.+...+.    
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R----   90 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR----   90 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch----
Confidence            4799999999888877753  22333556776  455432          25679999988766555554422100    


Q ss_pred             eeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCC
Q 046226          180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDA  257 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg  257 (434)
                                . ........++++.|++++++...  -..|.|.|+..++.+.++....  +..+--..+..+.+-+.||
T Consensus        91 ----------~-~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DG  157 (342)
T PF06433_consen   91 ----------A-QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDG  157 (342)
T ss_dssp             -------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTS
T ss_pred             ----------h-eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCC
Confidence                      0 01122344578889998887643  4579999999999888776432  2222222233677888999


Q ss_pred             eEEEEecccccCcceeEEEEEecccccCe-EEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCccc----------
Q 046226          258 TVRVWRRYFYSENQLHTLILTLTAKYSPV-KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ----------  326 (434)
Q Consensus       258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------  326 (434)
                      .+....+....... ......+.....++ ..-++...+..++--+.+|.|+-.|+..........-.+.          
T Consensus       158 sl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr  236 (342)
T PF06433_consen  158 SLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR  236 (342)
T ss_dssp             CEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred             ceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC
Confidence            99888887333332 22222233333333 2344555666666688899999998875542221110100          


Q ss_pred             CcccceEEEEeeCCEEEEe---cC-----CC--cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE
Q 046226          327 GHTHAVMCLASVANYVISG---SA-----DS--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI  396 (434)
Q Consensus       327 ~~~~~v~~~~~~~~~l~s~---~~-----dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  396 (434)
                      ...-.+.++....+.|++-   +.     |+  .|-++|+.++   +.+..+.. ..++.+|.++.+.        ..+|
T Consensus       237 PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---krv~Ri~l-~~~~~Si~Vsqd~--------~P~L  304 (342)
T PF06433_consen  237 PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---KRVARIPL-EHPIDSIAVSQDD--------KPLL  304 (342)
T ss_dssp             E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---EEEEEEEE-EEEESEEEEESSS--------S-EE
T ss_pred             CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---eEEEEEeC-CCccceEEEccCC--------CcEE
Confidence            0001123333223332221   11     22  3666677776   66766654 3457789998874        4566


Q ss_pred             EEe-ecCCeEEEEecCCCCccc
Q 046226          397 CTG-SLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       397 ~s~-~~Dg~v~iw~~~~~~~~~  417 (434)
                      .+. ..++.|.+||..+++...
T Consensus       305 ~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  305 YALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EEEETTTTEEEEEETTT--EEE
T ss_pred             EEEcCCCCeEEEEeCcCCcEEe
Confidence            554 468999999999998654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=0.00023  Score=65.73  Aligned_cols=207  Identities=6%  Similarity=-0.045  Sum_probs=112.0

Q ss_pred             eEEEecCCCceeEeeccCCCccEEEEEEeCC--E-EEEEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226          113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--R-VYAAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG  186 (434)
Q Consensus       113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~-l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
                      .|.+-|..... ...+.... .+..-.|+|+  . ++..+.   +..|.++|+.+++.....                  
T Consensus       170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt------------------  229 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA------------------  229 (419)
T ss_pred             eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe------------------
Confidence            55555553332 33233333 6778899997  3 444443   356788887655432221                  


Q ss_pred             cccccCcCCCeEEEEEecCCCEEEEE-ec--CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCC--eE
Q 046226          187 KDKMMKHMGPITSIAINVSDDTLYSA-SL--DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDA--TV  259 (434)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~~~~~l~s~-~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i  259 (434)
                           ...+......|+|||+.++.. +.  +..|.++|+.+++. ..+..+........|+||| .|+..+ ..+  .|
T Consensus       230 -----~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I  303 (419)
T PRK04043        230 -----SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNI  303 (419)
T ss_pred             -----cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceE
Confidence                 133445567899999877643 32  35788889887764 3444343334456899999 444443 444  45


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC---------CeEEEEEcCcccccccccCcccCccc
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD---------GYIHYWHKGWFSAQLQYGGALQGHTH  330 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~  330 (434)
                      .+.|+.  .+ ......  ..+.    ....|+|+|+.|+.....         ..|.+.|+...... .+..  .+. .
T Consensus       304 y~~dl~--~g-~~~rlt--~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~--~~~-~  370 (419)
T PRK04043        304 FMKKLN--SG-SVEQVV--FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA--NGV-N  370 (419)
T ss_pred             EEEECC--CC-CeEeCc--cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC--CCC-c
Confidence            555654  11 111111  1111    124899999988776543         36788887654322 1111  111 1


Q ss_pred             ceEEEEeeCCEEEEecCC-C--cEEEEeccC
Q 046226          331 AVMCLASVANYVISGSAD-S--TSRVWAREQ  358 (434)
Q Consensus       331 ~v~~~~~~~~~l~s~~~d-g--~i~iwd~~~  358 (434)
                      .-..++++|+.++....+ +  .+.+.++..
T Consensus       371 ~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        371 QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            224455667765544432 2  355566654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=0.00011  Score=67.97  Aligned_cols=190  Identities=14%  Similarity=0.058  Sum_probs=108.7

Q ss_pred             CeEEEEEecCCCE-EEEEec---CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-e-EEEEeCC--CeEEEEecccc
Q 046226          196 PITSIAINVSDDT-LYSASL---DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-V-LYSASDD--ATVRVWRRYFY  267 (434)
Q Consensus       196 ~v~~~~~~~~~~~-l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~s~~~d--g~i~iwd~~~~  267 (434)
                      .+..-.|+|||+. ++..+.   +..|+++|+.+++...... ..+......|+||| . +++.+.+  ..|.++|+.  
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~--  265 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN--  265 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC--
Confidence            6778899999985 554433   3579999998887544433 44556678899999 4 4444444  456666765  


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEE
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVIS  344 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s  344 (434)
                       .... ..   +..+........|+|||+.|+..+. .+  .|++.|+....... .  ...+..  ...++++|++++.
T Consensus       266 -~g~~-~~---LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l--t~~g~~--~~~~SPDG~~Ia~  335 (419)
T PRK04043        266 -TKTL-TQ---ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V--VFHGKN--NSSVSTYKNYIVY  335 (419)
T ss_pred             -CCcE-EE---cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C--ccCCCc--CceECCCCCEEEE
Confidence             1111 11   2222222334579999987776653 33  57777775433311 1  111221  2356667887665


Q ss_pred             ecCC---------CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-C--eEEEEecCC
Q 046226          345 GSAD---------STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-G--VLKMWRVTR  412 (434)
Q Consensus       345 ~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-g--~v~iw~~~~  412 (434)
                      ....         ..|.+.|+.++.. ..+.   .. +......|+|+         |+.|+-...+ +  .+.+.+++.
T Consensus       336 ~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT---~~-~~~~~p~~SPD---------G~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        336 SSRETNNEFGKNTFNLYLISTNSDYI-RRLT---AN-GVNQFPRFSSD---------GGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             EEcCCCcccCCCCcEEEEEECCCCCe-EECC---CC-CCcCCeEECCC---------CCEEEEEEccCCcEEEEEEecCC
Confidence            5443         3678888877632 2222   21 22234778888         7766655432 3  355556554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.2e-06  Score=76.61  Aligned_cols=207  Identities=18%  Similarity=0.073  Sum_probs=140.0

Q ss_pred             CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC---CeeEEEcccCccCeEEEEEcCCC-eEEEEeC-CCeEEEEeccc
Q 046226          192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD---SKCIETIQAHSEPINALVVADDG-VLYSASD-DATVRVWRRYF  266 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~i~iwd~~~  266 (434)
                      -|...|+.+... -.+++.+++.||.++.|--..   -+.+..+..|...|.+++.+-++ ++.+.+. |..++++|+..
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            477878777654 467899999999999997543   24455667788999999999999 7777677 99999999872


Q ss_pred             ccCcceeEEEEEecccccCeEEEEEec-CC---CEEEE-EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--C
Q 046226          267 YSENQLHTLILTLTAKYSPVKTLTLTL-DD---GLLYG-GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--A  339 (434)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  339 (434)
                      ..-....    .+.-   ....+.|.- .|   ..+++ .-.+|.+.++|-.....+..  ..-.-|..+|.++...  +
T Consensus        86 ~Dminmi----KL~~---lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~--~fkklH~sPV~~i~y~qa~  156 (558)
T KOG0882|consen   86 FDMINMI----KLVD---LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG--YFKKLHFSPVKKIRYNQAG  156 (558)
T ss_pred             cchhhhc----cccc---CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc--eecccccCceEEEEeeccc
Confidence            2111111    1111   111122221 22   13333 34578999999654432222  2344688899988876  6


Q ss_pred             CEEEEecCCCcEEEEeccCCC------------ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226          340 NYVISGSADSTSRVWAREQDG------------RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       340 ~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                      +.+++....|.|.-|..+..-            ...-+..+.-......++.|+|+         +..+.+-+.|..|++
T Consensus       157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~---------g~qistl~~DrkVR~  227 (558)
T KOG0882|consen  157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD---------GAQISTLNPDRKVRG  227 (558)
T ss_pred             cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc---------cCcccccCcccEEEE
Confidence            788888889999999887310            00112223334556788999999         899999999999999


Q ss_pred             EecCCCCccc
Q 046226          408 WRVTRPKSSC  417 (434)
Q Consensus       408 w~~~~~~~~~  417 (434)
                      +.+.+++...
T Consensus       228 F~~KtGklvq  237 (558)
T KOG0882|consen  228 FVFKTGKLVQ  237 (558)
T ss_pred             EEeccchhhh
Confidence            9999987643

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.52  E-value=0.00027  Score=64.31  Aligned_cols=251  Identities=8%  Similarity=0.062  Sum_probs=126.5

Q ss_pred             cEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCce------eeEee----eccCCCCceeE-----------EEeccccc
Q 046226          134 MVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVK------HVKLA----TIPKTGGAVRN-----------LIVGKDKM  190 (434)
Q Consensus       134 ~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~------~~~~~----~~~~~~~~~~~-----------~~~~~~~~  190 (434)
                      .|..+.|.++  .|+++...|.|.||.....+...      .....    ........+.+           -..+..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4778888886  78888888888888765443222      00000    00000111110           01111122


Q ss_pred             cCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc--c------CccCeEEEEEc-----CCC----eEEEE
Q 046226          191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ--A------HSEPINALVVA-----DDG----VLYSA  253 (434)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~~-----~~~----~l~s~  253 (434)
                      ....++|++++.+ |=.+++.|..+|.+.|.|++....+..-.  .      ....++++.|.     .|+    .+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3457899999997 66799999999999999998877665521  1      23467788775     333    78999


Q ss_pred             eCCCeEEEEeccc-ccCcceeEEEEEecccccCeEEEE-EecC--------------------CCEEEEEcCCCeEEEEE
Q 046226          254 SDDATVRVWRRYF-YSENQLHTLILTLTAKYSPVKTLT-LTLD--------------------DGLLYGGCTDGYIHYWH  311 (434)
Q Consensus       254 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~~~~--------------------~~~l~~~~~dg~i~i~d  311 (434)
                      ...|.+.+|.+.- ..+............+.+++..+. ++.+                    -..+++.+.+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999998862 222222222323334556666555 3221                    01344555677899998


Q ss_pred             cCcccccccccCcccCcc-cceEEEE-----eeCCEEEEecCCCcEEEEeccCCCceeeEEEeec----cccceeEEEEe
Q 046226          312 KGWFSAQLQYGGALQGHT-HAVMCLA-----SVANYVISGSADSTSRVWAREQDGRHTMLAVLVG----HRGPIRCAIAF  381 (434)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~-~~v~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~~~~~  381 (434)
                      ....+...+.   +..+. ....++.     -.+..|++-..+|.|++|.+..-   +.+....-    +...+....++
T Consensus       242 ~~~~k~~~K~---~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L---kei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  242 PPKSKGAHKS---FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL---KEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----EEEEEE-SS---HHHHTT-EE-
T ss_pred             CCCCccccee---eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc---hHhhcccCCCccccccccccEEC
Confidence            7644433222   11111 1112221     13557888899999999999886   44443333    22334556666


Q ss_pred             ecccCCCCCCcccEEEEee
Q 046226          382 LGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       382 ~~~~~~~~~~~~~~l~s~~  400 (434)
                      ++         |+.++-.|
T Consensus       316 ~~---------Gdi~~~~g  325 (395)
T PF08596_consen  316 RN---------GDIFYWTG  325 (395)
T ss_dssp             TT---------S-EEEE-S
T ss_pred             CC---------CCEEEEeC
Confidence            66         67665554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.50  E-value=2.9e-05  Score=69.19  Aligned_cols=252  Identities=10%  Similarity=0.058  Sum_probs=149.5

Q ss_pred             EEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226          115 RIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH  193 (434)
Q Consensus       115 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
                      .+|+..+......+....-++..+.++|. .++....-..|.+|+-.....+..+                        .
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~------------------------~   70 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF------------------------R   70 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhccceEEccccchhheeee------------------------e
Confidence            45665555554455545667889999997 3333344455899987655443333                        3


Q ss_pred             CCCeEEEEEecCCCEEEEEecCC---------------cEEEEEcCCCeeEEEcccCccC--eE-EEEEcCCCeEEEEeC
Q 046226          194 MGPITSIAINVSDDTLYSASLDK---------------TIKVWRIRDSKCIETIQAHSEP--IN-ALVVADDGVLYSASD  255 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~l~s~~~  255 (434)
                      ...|..+.|+|.+++|.+=...+               .+.+||..++..+..+.....+  .. -+.|+-+..+++--.
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv  150 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV  150 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence            34688999999999998765433               4999999999999998876554  44 567776662222224


Q ss_pred             CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC--EEEE-----EcCCCeEEEEEcCcccccccccCcccCc
Q 046226          256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG--LLYG-----GCTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       256 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      ...+.|+++.   ..........+  ....+....|+|.++  .|+.     ...++.+++|.+........  ..+..-
T Consensus       151 ~~sl~i~e~t---~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t--k~lfk~  223 (561)
T COG5354         151 GSSLYIHEIT---DNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT--KNLFKV  223 (561)
T ss_pred             cCeEEEEecC---CccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee--eeeEee
Confidence            4568999863   11111111111  135678888888643  3333     35578899998863222111  111111


Q ss_pred             ccceEEEEee--CCEEEEe-----------cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccE
Q 046226          329 THAVMCLASV--ANYVISG-----------SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT  395 (434)
Q Consensus       329 ~~~v~~~~~~--~~~l~s~-----------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  395 (434)
                      .  -..+.|.  |++|+.-           -.+..++|+++...    .+.....-.++|...+|.|.         ++.
T Consensus       224 ~--~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~----~i~V~~~~~~pVhdf~W~p~---------S~~  288 (561)
T COG5354         224 S--GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER----SIPVEKDLKDPVHDFTWEPL---------SSR  288 (561)
T ss_pred             c--ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc----ccceeccccccceeeeeccc---------CCc
Confidence            1  1223332  5543321           12356888888743    22222255789999999998         444


Q ss_pred             E--EEeecCCeEEEEecCC
Q 046226          396 I--CTGSLDGVLKMWRVTR  412 (434)
Q Consensus       396 l--~s~~~Dg~v~iw~~~~  412 (434)
                      +  ++|-.+-.+.++|++.
T Consensus       289 F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         289 FAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             eeEEecccccceeeccccc
Confidence            4  4444677777777764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.49  E-value=0.00032  Score=66.58  Aligned_cols=250  Identities=12%  Similarity=0.061  Sum_probs=138.5

Q ss_pred             CEEEEEeCCCeEEEecCCCceeEeeccCCCcc-----E-EEEEEeCCEEEEEE---------cCCeEEEeecCCCCCcee
Q 046226          103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSM-----V-VAMEVSHDRVYAAY---------GDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-----v-~~l~~~~~~l~~~s---------~dg~i~vwd~~~~~~~~~  167 (434)
                      +.++.++.++.|..+|.++++.+.+.......     + ....+..+.++.++         .+|.+..+|..+++....
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            78888999999999999999998876643321     1 12233345666654         367889999988887776


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcC-CCe-EEEEEecCCCEEEEEecCC------------------cEEEEEcCCCe
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHM-GPI-TSIAINVSDDTLYSASLDK------------------TIKVWRIRDSK  227 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~l~s~~~dg------------------~i~vwd~~~~~  227 (434)
                      .........  .... .........+. ..+ ...++.+.+..++.++.++                  .|.-+|.++|+
T Consensus       191 ~~~~~~~~~--~~~~-~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         191 FYTTEPDPN--AFPT-WGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeccCCCcC--CCCC-CCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            654211000  0000 00000000011 111 1244555567777776665                  79999999999


Q ss_pred             eEEEcccCccCe-----------EEEE-EcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec
Q 046226          228 CIETIQAHSEPI-----------NALV-VADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL  293 (434)
Q Consensus       228 ~~~~~~~~~~~v-----------~~~~-~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  293 (434)
                      .+..++.-....           ..+. .....  .++.++.+|.+...|..  ++....+....       ...++.+|
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~--tG~~~W~~~~~-------~~~~~~~~  338 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRT--TGKLISARPEV-------EQPMAYDP  338 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECC--CCcEeeEeEee-------ccccccCC
Confidence            988875321111           1111 11111  57788889999999887  33333322211       01122222


Q ss_pred             CCCEEEEE------------------cCCCeEEEEEcCcccccccccCcccC------cccceEEEEeeCCEEEEecCCC
Q 046226          294 DDGLLYGG------------------CTDGYIHYWHKGWFSAQLQYGGALQG------HTHAVMCLASVANYVISGSADS  349 (434)
Q Consensus       294 ~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~l~s~~~dg  349 (434)
                        ..++.+                  ..+|.|.-.|+.+.+...+.......      -......+...++.|++++.||
T Consensus       339 --~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG  416 (488)
T cd00216         339 --GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG  416 (488)
T ss_pred             --ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC
Confidence              222221                  23567777777666555443211000      0001123456788999999999


Q ss_pred             cEEEEeccCCCceeeEEEee
Q 046226          350 TSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~  369 (434)
                      .|+.+|..++   +.+..++
T Consensus       417 ~l~ald~~tG---~~lW~~~  433 (488)
T cd00216         417 YFRAFDATTG---KELWKFR  433 (488)
T ss_pred             eEEEEECCCC---ceeeEEE
Confidence            9999999998   4554443

The alignment model contains an 8-bladed beta-propeller.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.35  E-value=0.00039  Score=63.23  Aligned_cols=210  Identities=12%  Similarity=0.113  Sum_probs=115.3

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCee-------------------------------------------EEEc
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKC-------------------------------------------IETI  232 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------------------------------------------~~~~  232 (434)
                      .|+.+.|.++...|++|...|.|.+|.....+.                                           ..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            478899999999999999999999986532211                                           1111


Q ss_pred             ccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecc------cccCeEEEEEec-----CC---CEE
Q 046226          233 QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTA------KYSPVKTLTLTL-----DD---GLL  298 (434)
Q Consensus       233 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l  298 (434)
                      ....++|++++.+.-|+++.|..+|.+.|.|+|   +..... ...+..      ....++++.|..     |+   -.+
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~R---GPavI~-~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLR---GPAVIY-NENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETT---TTEEEE-EEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECC---CCeEEe-eccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            234678999999988899999999999999998   211111 111222      234577787763     32   378


Q ss_pred             EEEcCCCeEEEEEcCc-ccccc--cccCcccCcccceEEEEe-e-------------------C---CEEEEecCCCcEE
Q 046226          299 YGGCTDGYIHYWHKGW-FSAQL--QYGGALQGHTHAVMCLAS-V-------------------A---NYVISGSADSTSR  352 (434)
Q Consensus       299 ~~~~~dg~i~i~d~~~-~~~~~--~~~~~~~~~~~~v~~~~~-~-------------------~---~~l~s~~~dg~i~  352 (434)
                      ++|+..|.+.+|.+.. .....  .+......+..+|..+.. +                   |   ..++....+..+|
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            9999999999998742 11111  111111234444444431 1                   1   1234444477899


Q ss_pred             EEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       353 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      ++...+.   +.........-....+.+.+...    ...+..|++-..||.|+++.+..-+.+
T Consensus       239 v~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~----~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  239 VFKPPKS---KGAHKSFDDPFLCSSASVVPTIS----RNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             EE-TT------EEEEE-SS-EEEEEEEEEEEE-----EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             EEeCCCC---cccceeeccccccceEEEEeecc----cCCceEEEEEECCCcEEEEECCCchHh
Confidence            9998876   33332222212223344432000    001678999999999999999987654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.35  E-value=0.0012  Score=56.61  Aligned_cols=222  Identities=12%  Similarity=0.088  Sum_probs=124.3

Q ss_pred             EEEEEEeCC---EEEEEEcC-CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226          135 VVAMEVSHD---RVYAAYGD-GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY  210 (434)
Q Consensus       135 v~~l~~~~~---~l~~~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  210 (434)
                      ...++.+|.   .++.+-.- ....+||..++.....+...              ....+.+|      -+|++||++|+
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~--------------~gRHFyGH------g~fs~dG~~Ly   66 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP--------------PGRHFYGH------GVFSPDGRLLY   66 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC--------------CCCEEecC------EEEcCCCCEEE
Confidence            345566663   34444443 34667887766655443210              00112244      57999999999


Q ss_pred             EEec-----CCcEEEEEcC-CCeeEEEcccCccCeEEEEEcCCC-eEEEEeC-------CCeEE-----------EEecc
Q 046226          211 SASL-----DKTIKVWRIR-DSKCIETIQAHSEPINALVVADDG-VLYSASD-------DATVR-----------VWRRY  265 (434)
Q Consensus       211 s~~~-----dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-------dg~i~-----------iwd~~  265 (434)
                      +.-.     .|.|-|||.. +.+.+.++..|.-.-..+.+.||+ .|+.+..       .|.-+           +.|..
T Consensus        67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~  146 (305)
T PF07433_consen   67 TTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR  146 (305)
T ss_pred             EeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence            8744     4799999998 678888888887777889999999 5555421       12222           22222


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-------eEEEEEcCccccccccc-CcccCcccceEEEEe
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-------YIHYWHKGWFSAQLQYG-GALQGHTHAVMCLAS  337 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~  337 (434)
                        ++.-..+....-..|...+..+++.++|..++..-..|       -|.+++....-...... .....-...+-++++
T Consensus       147 --sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~  224 (305)
T PF07433_consen  147 --SGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAA  224 (305)
T ss_pred             --CCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEE
Confidence              11111111111134667899999999988766654443       23444322110000000 011123346677777


Q ss_pred             e--CCEE-EEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          338 V--ANYV-ISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       338 ~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      +  +.++ +|+=..+.+.+||..++   ..+....-  ..+..++..++
T Consensus       225 ~~~g~~ia~tsPrGg~~~~~d~~tg---~~~~~~~l--~D~cGva~~~~  268 (305)
T PF07433_consen  225 DRDGRLIAVTSPRGGRVAVWDAATG---RLLGSVPL--PDACGVAPTDD  268 (305)
T ss_pred             eCCCCEEEEECCCCCEEEEEECCCC---CEeecccc--CceeeeeecCC
Confidence            5  4455 55556789999999988   44443322  22444555554

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.9e-05  Score=68.27  Aligned_cols=74  Identities=22%  Similarity=0.186  Sum_probs=66.8

Q ss_pred             CcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEeccc
Q 046226          192 KHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYF  266 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~  266 (434)
                      .+...|.+++|+|... ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-+.  ++.+|..+|.|.+||++.
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            5888999999999876 7888999999999999999999888877 789999998777  899999999999999983

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.34  E-value=5.5e-07  Score=85.06  Aligned_cols=195  Identities=12%  Similarity=0.089  Sum_probs=131.7

Q ss_pred             ccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-e-EEEEeCCC-eEEEEeccc
Q 046226          190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-V-LYSASDDA-TVRVWRRYF  266 (434)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~s~~~dg-~i~iwd~~~  266 (434)
                      +..|....+|++|+.+.++|++|+..|.|+++++.+|........|..+|+-+.-+-+| . |.+++... -..+|++. 
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~- 1175 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS- 1175 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc-
Confidence            34688899999999999999999999999999999999999999999999999999888 4 44443333 57889876 


Q ss_pred             ccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEE
Q 046226          267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVIS  344 (434)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s  344 (434)
                          .......++    ..-.++.|+..-+.-+.|+......+||+.+......+.....+....-.+..|++  .+++ 
T Consensus      1176 ----s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1176 ----STGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             ----cccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence                122222222    34456788776566667777788999999877665554333323333334555553  3433 


Q ss_pred             ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          345 GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                        .||  .+||++..   ..+..|...... ..-.|+|.         |..++.-++     |||+++-+.+
T Consensus      1247 --ndG--vLWDvR~~---~aIh~FD~ft~~-~~G~FHP~---------g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIP---EAIHRFDQFTDY-GGGGFHPS---------GNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred             --eCc--eeeeeccH---HHHhhhhhheec-ccccccCC---------CceEEeech-----hhhhHHHHHH
Confidence              344  47999875   444444332211 12346666         777777663     7998876543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.32  E-value=0.0016  Score=59.99  Aligned_cols=115  Identities=7%  Similarity=0.090  Sum_probs=78.0

Q ss_pred             CCeEEEEEec-CCCEEEEE----ecCCc----EEEEEcCCCee--EEEcc-cCccCeEEEEEcCCC-eEEEEeCCCeEEE
Q 046226          195 GPITSIAINV-SDDTLYSA----SLDKT----IKVWRIRDSKC--IETIQ-AHSEPINALVVADDG-VLYSASDDATVRV  261 (434)
Q Consensus       195 ~~v~~~~~~~-~~~~l~s~----~~dg~----i~vwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~i  261 (434)
                      ....++.|+. +...+.+.    +.+|.    -++|++...+.  +.... .....|.|++++|+. .++.|+.||.|.+
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            3446777775 34444443    33443    34566654432  11111 256789999999999 9999999999999


Q ss_pred             EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      ||...      .  ........-..+.++|+|+|..+++|+..|.+.+||+.....
T Consensus       286 yD~~~------~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  286 YDTTR------G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             EEcCC------C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            99761      1  111112334678899999999999999999999999864433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.23  E-value=7.8e-07  Score=81.13  Aligned_cols=204  Identities=12%  Similarity=0.157  Sum_probs=123.2

Q ss_pred             ccEEEEEE----cCCEEEEEeCCCeEEEecCCCcee--EeeccCCCccEEEEEEeCC---EEEEEEc----CCeEEEeec
Q 046226           93 GQILCIAV----GNGFIYTGSDSNVIRIWKQPEFTE--CGRLKAKTSMVVAMEVSHD---RVYAAYG----DGKIRVWRS  159 (434)
Q Consensus        93 ~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~---~l~~~s~----dg~i~vwd~  159 (434)
                      ..+.|++.    +..++++|..+|.|-+-.+....-  -....++...+++++|++-   .|++|-.    |..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            34666666    345788899999998877654221  2334567788999999983   5555532    788999999


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCe
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI  239 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v  239 (434)
                      .+.-.+..-.        ..   +..      +......+++|..+.+++++|.....+.++|++... .......+..+
T Consensus       137 ~s~ltvPke~--------~~---fs~------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~v  198 (783)
T KOG1008|consen  137 NSLLTVPKES--------PL---FSS------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYV  198 (783)
T ss_pred             ccccCCCccc--------cc---ccc------ccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhc
Confidence            7652211000        00   000      122334588888889999999989999999997321 11122234466


Q ss_pred             EEEEEcC-CCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC-EEEEE-cCCCeEEEEEcCc
Q 046226          240 NALVVAD-DGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGG-CTDGYIHYWHKGW  314 (434)
Q Consensus       240 ~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~i~d~~~  314 (434)
                      ..+.+.| ..-.++...||.|.+||....-+................+..++|.|... .+++. -..++|++||+..
T Consensus       199 qG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  199 QGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            7778887 33444455599999999321111111111111112223588999999432 34443 4467899999753

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=2.5e-05  Score=73.91  Aligned_cols=70  Identities=21%  Similarity=0.304  Sum_probs=62.7

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~  265 (434)
                      .+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++| .++++..-|.|.+|...
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            36679999999999999999999999998877666667799999999999999 99999999999999765

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.20  E-value=7e-07  Score=81.45  Aligned_cols=203  Identities=14%  Similarity=0.164  Sum_probs=130.8

Q ss_pred             cCCCeEEEEEecCC--CEEEEEecCCcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC--eEEEEe----CCCeEEEE
Q 046226          193 HMGPITSIAINVSD--DTLYSASLDKTIKVWRIRDSKC--IETIQAHSEPINALVVADDG--VLYSAS----DDATVRVW  262 (434)
Q Consensus       193 ~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~--~l~s~~----~dg~i~iw  262 (434)
                      ....+.|+++.-+.  ..+++|..+|.|-+-.++...-  -....++..+.++++|++-.  .|++|-    .|..+.||
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            44567788776543  4678899999999988865432  23445677889999999864  677663    45679999


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEE---eeC
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA---SVA  339 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~---~~~  339 (434)
                      |+...-..........- +......+++|..+.+++++|.....++++|++.........     .+..+..+.   |.+
T Consensus       135 di~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-----nTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-----NTKYVQGITVDPFSP  208 (783)
T ss_pred             ecccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-----hhhhcccceecCCCC
Confidence            98732111111111111 233456689999899999999999999999997433222211     111222232   467


Q ss_pred             CEEEEecCCCcEEEEec-cCCCceeeEEEeeccc----cceeEEEEeecccCCCCCCcccEEEEeecC-CeEEEEecCC
Q 046226          340 NYVISGSADSTSRVWAR-EQDGRHTMLAVLVGHR----GPIRCAIAFLGRFGEETEDEYCTICTGSLD-GVLKMWRVTR  412 (434)
Q Consensus       340 ~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-g~v~iw~~~~  412 (434)
                      +|+++-. ||.|.+||. .+-+  .++..+....    ..+..++|+|.+        ...+++...| ++|+++++..
T Consensus       209 nY~cs~~-dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtr--------tglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTR--------TGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             Cceeccc-cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCC--------cchhhhhccCcceEEEecccc
Confidence            8988877 999999993 3221  2232222222    248899999986        4456666554 7899999863

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.19  E-value=0.0013  Score=58.99  Aligned_cols=181  Identities=15%  Similarity=0.156  Sum_probs=109.5

Q ss_pred             CcEEEEEcCCCeeEEEcccC-ccCeEEEE---EcCC----C-eEEEEeC----------CCeEEEEecccc-cCcceeEE
Q 046226          216 KTIKVWRIRDSKCIETIQAH-SEPINALV---VADD----G-VLYSASD----------DATVRVWRRYFY-SENQLHTL  275 (434)
Q Consensus       216 g~i~vwd~~~~~~~~~~~~~-~~~v~~~~---~~~~----~-~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~  275 (434)
                      +.|++.|..+.+.+..+.-. ...+.+++   +..+    . +++.|+.          .|.|.++++... ........
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35888888888777665432 23444443   3322    3 6666643          289999998831 00112222


Q ss_pred             EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEe
Q 046226          276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWA  355 (434)
Q Consensus       276 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd  355 (434)
                      +.. ....++|++++-- ++ .|+++. ++.|.+|++.... ......... ....+.++...+++++.|.....+.++.
T Consensus        82 i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~-~l~~~~~~~-~~~~i~sl~~~~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   82 IHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK-TLLKKAFYD-SPFYITSLSVFKNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS-SEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             EEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc-cchhhheec-ceEEEEEEeccccEEEEEEcccCEEEEE
Confidence            222 2346788888876 33 444443 5889999987555 122222222 2237888888899999999989898886


Q ss_pred             ccCCCc-eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          356 REQDGR-HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       356 ~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      .+.... ...+.. ......++++.+.++         ++.++.+..+|.|.++..+.
T Consensus       156 ~~~~~~~l~~va~-d~~~~~v~~~~~l~d---------~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  156 YDEENNKLILVAR-DYQPRWVTAAEFLVD---------EDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EETTTE-EEEEEE-ESS-BEEEEEEEE-S---------SSEEEEEETTSEEEEEEE-S
T ss_pred             EEccCCEEEEEEe-cCCCccEEEEEEecC---------CcEEEEEcCCCeEEEEEECC
Confidence            654321 222222 233556888888866         56899999999999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.16  E-value=0.00014  Score=70.76  Aligned_cols=199  Identities=10%  Similarity=0.110  Sum_probs=118.1

Q ss_pred             CCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccC-eEEEEEcC------CCeEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226          206 DDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEP-INALVVAD------DGVLYSASDDATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       206 ~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  277 (434)
                      .++|+.- .....|+-.|++.|+.+..+..+... |..++-..      ....+.|-.+..+..||.|.......... .
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-~  571 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-S  571 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc-c
Confidence            3444433 45678999999999999999987754 66654321      11567788888999999994321111111 1


Q ss_pred             EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEe
Q 046226          278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWA  355 (434)
Q Consensus       278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd  355 (434)
                      ..........|++-+.+ .+||+|+.+|.|++||-- .   ..-...+++-..+|.++..  +|+++++.+ +..|.+++
T Consensus       572 k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~-g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRL-G---KRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLID  645 (794)
T ss_pred             cccccCCCceEEEecCC-ceEEEEeCCCcEEeeccc-c---hhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence            11123345677776655 578999999999999932 1   1222345566678888776  588776655 55677777


Q ss_pred             cc--CCC-----------------ceeeEEEeeccccc-----eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          356 RE--QDG-----------------RHTMLAVLVGHRGP-----IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       356 ~~--~~~-----------------~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      ..  .+.                 .+..+.--+.|...     ...+.|.|..+..........|+|+ ....+.+|++.
T Consensus       646 t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Ivts-tG~f~v~Wnf~  724 (794)
T PF08553_consen  646 TLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTS-TGPFVVTWNFK  724 (794)
T ss_pred             EeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEe-ccCEEEEEEHH
Confidence            53  110                 11122222223322     2446777766543222224445444 45689999987


Q ss_pred             C
Q 046226          412 R  412 (434)
Q Consensus       412 ~  412 (434)
                      .
T Consensus       725 k  725 (794)
T PF08553_consen  725 K  725 (794)
T ss_pred             H
Confidence            4

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.15  E-value=0.00021  Score=69.60  Aligned_cols=145  Identities=12%  Similarity=0.154  Sum_probs=100.2

Q ss_pred             CEEEEE-eCCCeEEEecCCCceeEeeccCCCcc-EEEEEEe-------CCEEEEEEcCCeEEEeecCCCCCceeeEeeec
Q 046226          103 GFIYTG-SDSNVIRIWKQPEFTECGRLKAKTSM-VVAMEVS-------HDRVYAAYGDGKIRVWRSTWDNGVKHVKLATI  173 (434)
Q Consensus       103 ~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~-------~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~  173 (434)
                      ++|+.- .....|+-.|++.|+.+..++.|... |..++-.       +...++|-.+..+..||.+-... +...    
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~----  568 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVD----  568 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceee----
Confidence            344443 44578888899999999999888754 6666543       23678888899999999875431 0000    


Q ss_pred             cCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEE
Q 046226          174 PKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA  253 (434)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~  253 (434)
                                  .............|++-..+| +||+|+.+|.|++||--..+....+.+-..+|..|.++.||..+.+
T Consensus       569 ------------~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  569 ------------SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             ------------ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence                        000011355567888776554 7999999999999995433333445667889999999999955555


Q ss_pred             eCCCeEEEEecc
Q 046226          254 SDDATVRVWRRY  265 (434)
Q Consensus       254 ~~dg~i~iwd~~  265 (434)
                      ..+..|.+++..
T Consensus       636 Tc~tyLlLi~t~  647 (794)
T PF08553_consen  636 TCKTYLLLIDTL  647 (794)
T ss_pred             eecceEEEEEEe
Confidence            556788888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.12  E-value=0.0031  Score=59.53  Aligned_cols=154  Identities=8%  Similarity=-0.008  Sum_probs=85.4

Q ss_pred             EecCCCEEEE-EecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-------------------------
Q 046226          202 INVSDDTLYS-ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-------------------------  254 (434)
Q Consensus       202 ~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-------------------------  254 (434)
                      +.+||+.+.. .-..+.+.+.|.++.+...++.... ....+++++++ ++++.+                         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            4556765543 3345678888888877766655322 33456666666 444443                         


Q ss_pred             ---------------CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCccccc
Q 046226          255 ---------------DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQ  318 (434)
Q Consensus       255 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~  318 (434)
                                     .++.|.+.|.+..... .......+ .-......+.++|||+++++++. +..|.|+|+......
T Consensus       279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~-~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~  356 (635)
T PRK02888        279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANA-GSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL  356 (635)
T ss_pred             HHHHHhhhCCCEEEECCCEEEEEECCccccC-CcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence                           1233555554410000 01111111 22345678899999999877655 889999998754421


Q ss_pred             c----ccc----CcccCcccc-eEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226          319 L----QYG----GALQGHTHA-VMCLASVANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       319 ~----~~~----~~~~~~~~~-v~~~~~~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      .    .+.    ....--.++ -+.+.-.|+...+-..|..|..||+..
T Consensus       357 ~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        357 FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            1    110    111111111 133333456778888899999999876

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.10  E-value=0.0055  Score=53.62  Aligned_cols=244  Identities=14%  Similarity=0.171  Sum_probs=126.0

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      .++.|+.|..+| |.+++.........+. +...|..+...++ .++..-.|+.+.++++..-...........+.....
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence            788999999988 8899883322222222 2233999999886 334444569999999875433331110000000000


Q ss_pred             eeEEEeccccccCcCCCeEEEE--EecCCCEEEEEecCCcEEEEEcCCC-----eeEEEcccCccCeEEEEEcCCCeEEE
Q 046226          180 VRNLIVGKDKMMKHMGPITSIA--INVSDDTLYSASLDKTIKVWRIRDS-----KCIETIQAHSEPINALVVADDGVLYS  252 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~l~s  252 (434)
                              .........+...+  -...+...+.......|.+|.....     +..+.+. -...+.+++|.++ .++.
T Consensus        84 --------~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~-~i~v  153 (275)
T PF00780_consen   84 --------PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN-KICV  153 (275)
T ss_pred             --------cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC-EEEE
Confidence                    00001233344444  1123333344444568888887653     3445554 3467889999844 5555


Q ss_pred             EeCCCeEEEEecccccCcceeEEEEEe---------cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC
Q 046226          253 ASDDATVRVWRRYFYSENQLHTLILTL---------TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG  323 (434)
Q Consensus       253 ~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  323 (434)
                      |..++ ..+.|+....   ........         .....++..+... ++.+|++-  |..-.+.|.......   ..
T Consensus       154 ~~~~~-f~~idl~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r---~~  223 (275)
T PF00780_consen  154 GTSKG-FYLIDLNTGS---PSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSR---KS  223 (275)
T ss_pred             EeCCc-eEEEecCCCC---ceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCc---cc
Confidence            55544 6677876211   11111000         0111233333333 45666543  333333344321111   11


Q ss_pred             cccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226          324 ALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       324 ~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                      .+.-. .....+.+...||++.+.+ .|.||++.++   +.++.+...
T Consensus       224 ~i~W~-~~p~~~~~~~pyli~~~~~-~iEV~~~~~~---~lvQ~i~~~  266 (275)
T PF00780_consen  224 TIQWS-SAPQSVAYSSPYLIAFSSN-SIEVRSLETG---ELVQTIPLP  266 (275)
T ss_pred             EEEcC-CchhEEEEECCEEEEECCC-EEEEEECcCC---cEEEEEECC
Confidence            22121 2456677777788887765 4999999998   666666543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.10  E-value=0.0037  Score=51.49  Aligned_cols=140  Identities=14%  Similarity=0.046  Sum_probs=89.6

Q ss_pred             CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 046226          143 DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR  222 (434)
Q Consensus       143 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  222 (434)
                      .+++.|+..+.+..-|..+++......                       -...|.+-+.- -|++++.|+..|.+++.+
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-----------------------lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~   79 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------------LGVRIECSAIV-VGDFVVLGCYSGGLYFLC   79 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-----------------------hCceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence            378888888888888887776655432                       22233333332 377899999999999999


Q ss_pred             cCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226          223 IRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      ..+|...+.+.....--......+++ .+..|+.|+..+..|.+      ....+...+.......+=++.+....|+.+
T Consensus        80 ~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~------~~~cVykskcgG~~f~sP~i~~g~~sly~a  153 (354)
T KOG4649|consen   80 VKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPK------TYGCVYKSKCGGGTFVSPVIAPGDGSLYAA  153 (354)
T ss_pred             ecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccc------ccceEEecccCCceeccceecCCCceEEEE
Confidence            99998887776443322233445566 99999999999999987      333343333333333334455534455555


Q ss_pred             cCCCeEEEEEc
Q 046226          302 CTDGYIHYWHK  312 (434)
Q Consensus       302 ~~dg~i~i~d~  312 (434)
                      ...|.+.--..
T Consensus       154 ~t~G~vlavt~  164 (354)
T KOG4649|consen  154 ITAGAVLAVTK  164 (354)
T ss_pred             eccceEEEEcc
Confidence            56665554443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.09  E-value=5.9e-05  Score=70.10  Aligned_cols=154  Identities=10%  Similarity=0.101  Sum_probs=100.0

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc-cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCc
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ-AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      +...|.--++...+++++.|+.-|.+++|+-..++....-. +..+.+..+.++++. ++++|+..|.|.++-+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            44455555666779999999999999999987766443322 234455556677777 8888889999999977631111


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEec
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGS  346 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~  346 (434)
                      ........-..|...|++++|++++..+++|...|+|..-.++....-......+-.-...|..++....+|++++
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVSt  187 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVST  187 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhh
Confidence            1111112223367899999999999999999999999998886521111111222233456666666555544443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.09  E-value=0.0016  Score=60.18  Aligned_cols=224  Identities=13%  Similarity=0.100  Sum_probs=111.5

Q ss_pred             CCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEE
Q 046226          131 KTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTL  209 (434)
Q Consensus       131 ~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  209 (434)
                      .......+.++|+ ..++.+.||...++.....   +.                        ...+.....+|.+ .+.+
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~---r~------------------------k~~G~g~~~vw~~-~n~y   82 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAW---RN------------------------KAFGSGLSFVWSS-RNRY   82 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEETTEEEEEETTTT---EE------------------------EEEEE-SEEEE-T-SSEE
T ss_pred             CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCC---cc------------------------cccCceeEEEEec-CccE
Confidence            3445688999998 6666688999999873211   11                        1334456788888 5557


Q ss_pred             EEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEE
Q 046226          210 YSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKT  288 (434)
Q Consensus       210 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  288 (434)
                      ++-..++.|.++.--+.+....+... ..+..|..   | +|...+ ++.|.+||+.      ....+..+...  +|..
T Consensus        83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~-~~~i~~yDw~------~~~~i~~i~v~--~vk~  149 (443)
T PF04053_consen   83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKS-SDFICFYDWE------TGKLIRRIDVS--AVKY  149 (443)
T ss_dssp             EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEE-TTEEEEE-TT------T--EEEEESS---E-EE
T ss_pred             EEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEEC-CCCEEEEEhh------HcceeeEEecC--CCcE
Confidence            77777888999632222222233321 23444433   6 454444 4489999987      44555555432  4899


Q ss_pred             EEEecCCCEEEEEcCCCeEEEEEcCccccc------cc-ccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCc
Q 046226          289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ------LQ-YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGR  361 (434)
Q Consensus       289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~-~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  361 (434)
                      +.|++++.+++..+.+ .+.|++.......      .+ .......-...|.+..|.++.++-.+.. .|+.  +-.| .
T Consensus       150 V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~G-e  224 (443)
T PF04053_consen  150 VIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNG-E  224 (443)
T ss_dssp             EEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETT-E
T ss_pred             EEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcC-C
Confidence            9999999999988755 6777775432000      00 0011111134677777887755544444 5655  3333 1


Q ss_pred             eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          362 HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       362 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      ...+..+   ..++.=+.+.+.         .+.+.....|+.|..+.++.
T Consensus       225 ~~~i~~l---d~~~yllgy~~~---------~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  225 TGIIAHL---DKPLYLLGYLPK---------ENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEEEEE----SS--EEEEEETT---------TTEEEEE-TT--EEEEE--H
T ss_pred             cceEEEc---CCceEEEEEEcc---------CCEEEEEECCCCEEEEEECH
Confidence            1233332   445666677764         56788888999998888763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.08  E-value=0.002  Score=55.38  Aligned_cols=204  Identities=16%  Similarity=0.101  Sum_probs=119.6

Q ss_pred             CeEEEEEecC-CCEEEEEecCC-cEEEEEcCCCeeEEEcccCccCe--EEEEEcCCC-eEEEEe-----CCCeEEEEecc
Q 046226          196 PITSIAINVS-DDTLYSASLDK-TIKVWRIRDSKCIETIQAHSEPI--NALVVADDG-VLYSAS-----DDATVRVWRRY  265 (434)
Q Consensus       196 ~v~~~~~~~~-~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~-~l~s~~-----~dg~i~iwd~~  265 (434)
                      ....++.+|. ...++.+-.-| ...+||..+++....+....+.-  -.-.|++|| +|++.-     ..|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            3456777884 44555666555 47889999998887776433321  245789999 666653     35899999976


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-------CCeEEEEEcCccccccccc----------Ccc--c
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-------DGYIHYWHKGWFSAQLQYG----------GAL--Q  326 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~----------~~~--~  326 (434)
                           .....+..+..+.-....+.+.|||+.|+++-.       .|.-++ ++.+....+.+.          ..+  .
T Consensus        86 -----~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   86 -----RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             -----CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCcc
Confidence                 345556667777777788999999988877632       123222 222222222211          112  3


Q ss_pred             CcccceEEEEeeCC--EEEEecCCC-------cEEEEeccCCCceeeEEE----eeccccceeEEEEeecccCCCCCCcc
Q 046226          327 GHTHAVMCLASVAN--YVISGSADS-------TSRVWAREQDGRHTMLAV----LVGHRGPIRCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       327 ~~~~~v~~~~~~~~--~l~s~~~dg-------~i~iwd~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~~  393 (434)
                      .|...|.-++++++  .++..-..|       .|-+++....  ...+..    ...-.+-+-+|+++++         +
T Consensus       160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~---------g  228 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRD---------G  228 (305)
T ss_pred             ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCC---------C
Confidence            45566766666533  222222222       1223322211  111110    1122456788999988         6


Q ss_pred             cEE-EEeecCCeEEEEecCCCCcc
Q 046226          394 CTI-CTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       394 ~~l-~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      .++ +|+=.-|.+.+||..+++.+
T Consensus       229 ~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  229 RLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             CEEEEECCCCCEEEEEECCCCCEe
Confidence            555 56667889999999988754

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.07  E-value=0.0081  Score=55.51  Aligned_cols=247  Identities=13%  Similarity=0.104  Sum_probs=124.2

Q ss_pred             eeeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCce------eEeeccCCCccEEEEEEeCCEEEEEEcCCeEE
Q 046226           83 RCISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFT------ECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIR  155 (434)
Q Consensus        83 ~~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~  155 (434)
                      +.+.++.-..+.|.++.| +...|++-..||.++++|+....      .+.........+....+..++++.-..++.+.
T Consensus        71 ~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~  150 (410)
T PF04841_consen   71 KLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFY  150 (410)
T ss_pred             CEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEECCCCeEE
Confidence            344444434489999999 77788888899999999986333      11111222233334444445666666666665


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  235 (434)
                      +.+-.... .........+.....          ...+........++.+....+....++.+.+.+-...+.   +. .
T Consensus       151 ~v~n~~~~-~~~~~~~~~p~~~~~----------~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~  215 (410)
T PF04841_consen  151 VVNNIDEP-VKLRRLPEIPGLWTK----------FHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-S  215 (410)
T ss_pred             EEeCcccc-chhhccccCCCcccc----------cccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-C
Confidence            54322111 110011111110000          000111101133445555555555566676555433211   22 3


Q ss_pred             ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc-cccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          236 SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       236 ~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      .+++..|+++|++ +++.-..+|.+.+.+..      ..+....+.. .......+.|.-++..++.-  ...|.+..  
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD------f~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg--  285 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD------FSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG--  285 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECc------ccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC--
Confidence            4689999999999 78888888999888654      1222222222 23455677776553332222  23344432  


Q ss_pred             cccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccc
Q 046226          314 WFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR  372 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~  372 (434)
                                    ..+.-..+.+++..++..-.|| +||..-..-   +.++..+...
T Consensus       286 --------------~~~~~~~~~~~~~~~l~~E~DG-~riit~~~~---~~l~~Vp~~~  326 (410)
T PF04841_consen  286 --------------PDGDSISFWYDGPVILVSEIDG-VRIITSTSH---EFLQRVPDST  326 (410)
T ss_pred             --------------CCCCceEEeccCceEEeccCCc-eEEEeCCce---EEEEECCHHH
Confidence                          1111123334444445555566 777755433   4555544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=6.9e-06  Score=65.81  Aligned_cols=142  Identities=16%  Similarity=0.082  Sum_probs=87.3

Q ss_pred             eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226          249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      .+...+.||.|+-++++...     ........+...   .....-+..+++|+.+|.|.+|..........   ....-
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k-----~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d---~~~s~  100 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHK-----ESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD---RVCSG  100 (238)
T ss_pred             hhccccCCcccccchhhhhh-----hhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHH---hhhcc
Confidence            46666788888888876111     111111111111   11222356799999999999998752222111   12233


Q ss_pred             ccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccc-cceeEEEEeecccCCCCCCcccEEEEe--ecC
Q 046226          329 THAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR-GPIRCAIAFLGRFGEETEDEYCTICTG--SLD  402 (434)
Q Consensus       329 ~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~--~~D  402 (434)
                      ...|.++.+.   +.+.++++.||.||.|++...   +.+.....|. .++..+..+..         +.+|+.+  |.|
T Consensus       101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---k~~g~~g~h~~~~~e~~ivv~s---------d~~i~~a~~S~d  168 (238)
T KOG2444|consen  101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---KVLGYVGQHNFESGEELIVVGS---------DEFLKIADTSHD  168 (238)
T ss_pred             cccceeccccccccceeEEeccCCceeeeccccC---ceeeeeccccCCCcceeEEecC---------CceEEeeccccc
Confidence            3455555554   448999999999999999877   5565556666 45555555544         5677777  788


Q ss_pred             CeEEEEecCCC
Q 046226          403 GVLKMWRVTRP  413 (434)
Q Consensus       403 g~v~iw~~~~~  413 (434)
                      ..++.|++..-
T Consensus       169 ~~~k~W~ve~~  179 (238)
T KOG2444|consen  169 RVLKKWNVEKI  179 (238)
T ss_pred             hhhhhcchhhh
Confidence            88888887643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.06  E-value=0.0069  Score=53.01  Aligned_cols=229  Identities=9%  Similarity=0.076  Sum_probs=126.6

Q ss_pred             EeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEE
Q 046226          140 VSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIK  219 (434)
Q Consensus       140 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  219 (434)
                      -..+.|+.|+.+| +.++++.........                       .+...|..+...++-+.|++-+ |+.++
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-----------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~   59 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI-----------------------LKLSSITQLSVLPELNLLLVLS-DGQLY   59 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE-----------------------eecceEEEEEEecccCEEEEEc-CCccE
Confidence            3446899999888 899988322222222                       1444499999999888877776 69999


Q ss_pred             EEEcCCCeeEEEc--------------ccCccCeEEEE--EcCCC-eEEEEeCCCeEEEEecccccCccee-EEEEEecc
Q 046226          220 VWRIRDSKCIETI--------------QAHSEPINALV--VADDG-VLYSASDDATVRVWRRYFYSENQLH-TLILTLTA  281 (434)
Q Consensus       220 vwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~  281 (434)
                      ++++.........              ......+...+  -...+ ..++......|.+|.......  .. .....+. 
T Consensus        60 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~--~f~~~~ke~~-  136 (275)
T PF00780_consen   60 VYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN--SFSKLLKEIS-  136 (275)
T ss_pred             EEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc--cccceeEEEE-
Confidence            9999765433311              11223444444  11233 444455556899998773211  11 2222222 


Q ss_pred             cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc--------ccCcccceEEEEee-CCEEEEecCCCcEE
Q 046226          282 KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA--------LQGHTHAVMCLASV-ANYVISGSADSTSR  352 (434)
Q Consensus       282 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~~v~~~~~~-~~~l~s~~~dg~i~  352 (434)
                      ....+..++|.  ++.++.|..++ ..+.|+.+.....-....        ......++..+..+ +.+|++.  |..-.
T Consensus       137 lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~  211 (275)
T PF00780_consen  137 LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGV  211 (275)
T ss_pred             cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEE
Confidence            23678888888  56777777555 677788744332111000        01112344455555 4455543  33444


Q ss_pred             EEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       353 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      +.|.... ... ...+.- ...+.++++.           ..+|+..+.+ .|.||++.+++..
T Consensus       212 fv~~~G~-~~r-~~~i~W-~~~p~~~~~~-----------~pyli~~~~~-~iEV~~~~~~~lv  260 (275)
T PF00780_consen  212 FVNKNGE-PSR-KSTIQW-SSAPQSVAYS-----------SPYLIAFSSN-SIEVRSLETGELV  260 (275)
T ss_pred             EEcCCCC-cCc-ccEEEc-CCchhEEEEE-----------CCEEEEECCC-EEEEEECcCCcEE
Confidence            4444332 111 122222 2345566665           4477777664 5999999999653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.00  E-value=0.0049  Score=55.25  Aligned_cols=192  Identities=13%  Similarity=0.077  Sum_probs=104.2

Q ss_pred             CCEEEEEec---------C-CcEEEEEcCCC----eeEEEc--ccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccC
Q 046226          206 DDTLYSASL---------D-KTIKVWRIRDS----KCIETI--QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSE  269 (434)
Q Consensus       206 ~~~l~s~~~---------d-g~i~vwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  269 (434)
                      ..+|++|+.         . |.|.++++...    ..+..+  ....++|++++-. ++.|+++. ++.|.+|++.... 
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~-  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSK-  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTS-
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEee-cCEEEEEEccCcc-
Confidence            467777654         2 88999999884    122222  2247889999887 44544433 4789999987222 


Q ss_pred             cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecC
Q 046226          270 NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSA  347 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  347 (434)
                        ......... ....+.++...  ++++++|+....+.++..+........... ......++++.+  +++.++.+..
T Consensus       119 --~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~  192 (321)
T PF03178_consen  119 --TLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDK  192 (321)
T ss_dssp             --SEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEET
T ss_pred             --cchhhheec-ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcC
Confidence              112222222 22255555554  679999999888888865432222222211 122334666665  4569999999


Q ss_pred             CCcEEEEeccCC-----C---ceeeEEEeeccccceeEE---EEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226          348 DSTSRVWAREQD-----G---RHTMLAVLVGHRGPIRCA---IAFLGRFGEETEDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       348 dg~i~iwd~~~~-----~---~~~~~~~~~~h~~~v~~~---~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw  408 (434)
                      +|.+.++.....     .   .......+. ....|+++   .+.|. ...........++-++.+|.|...
T Consensus       193 ~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~-~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  193 DGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPR-SGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS---SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeec-CCCCcccccceEEEEecCCEEEEE
Confidence            999999988642     1   122233332 23456666   44441 000000013458888899998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.99  E-value=0.0074  Score=51.05  Aligned_cols=204  Identities=9%  Similarity=-0.008  Sum_probs=107.2

Q ss_pred             CcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEcccC-ccCeEEEEEcCCCe-EEEEeCCCeEEEEeccccc
Q 046226          192 KHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQAH-SEPINALVVADDGV-LYSASDDATVRVWRRYFYS  268 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~  268 (434)
                      +-...+..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+....|++..++. +++--.++.+.++++....
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            4556699999999866 4556666788888886 57877777543 35678999998884 4444458999999884222


Q ss_pred             CcceeE----EEEEec-ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc--cccccc-----CcccCcccceEEEE
Q 046226          269 ENQLHT----LILTLT-AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS--AQLQYG-----GALQGHTHAVMCLA  336 (434)
Q Consensus       269 ~~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-----~~~~~~~~~v~~~~  336 (434)
                      ......    ...... .++..+..++|++.++.|+++-+..-..+|.+....  ......     .........+.+++
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence            211111    111122 345568999999998888888887777777765311  111000     00112223456777


Q ss_pred             eeC---CEEEEecCCCcEEEEeccCCCceeeEEEeec-cc------cceeEEEEeecccCCCCCCcccEEEEeecCCeEE
Q 046226          337 SVA---NYVISGSADSTSRVWAREQDGRHTMLAVLVG-HR------GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK  406 (434)
Q Consensus       337 ~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~  406 (434)
                      +++   .+++.......|..+|.. +. ......+.. ..      ...-.|++.++         |.+.++ ++-+..+
T Consensus       178 ~~p~t~~lliLS~es~~l~~~d~~-G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~---------G~LYIv-sEpNlfy  245 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRLLLELDRQ-GR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPD---------GNLYIV-SEPNLFY  245 (248)
T ss_dssp             EETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT-----------EEEE-ETTTEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEECCC-CC-EEEEEEeCCcccCcccccCCccEEEECCC---------CCEEEE-cCCceEE
Confidence            764   477778888899999943 42 122233332 11      13556888877         654444 4555554


Q ss_pred             EE
Q 046226          407 MW  408 (434)
Q Consensus       407 iw  408 (434)
                      ++
T Consensus       246 ~f  247 (248)
T PF06977_consen  246 RF  247 (248)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.97  E-value=0.0093  Score=55.14  Aligned_cols=196  Identities=11%  Similarity=0.105  Sum_probs=100.2

Q ss_pred             eEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccccc
Q 046226          113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMM  191 (434)
Q Consensus       113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (434)
                      .|+||+. .|+.+..+.-..+.|.++.|..+ .|++...||.++++|+....   .+.+..      .+....       
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~---~fsl~~------~i~~~~-------  124 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF---QFSLGE------EIEEEK-------  124 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce---eechhh------hccccC-------
Confidence            5999985 55666665544489999999887 88999999999999986332   221110      000000       


Q ss_pred             CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-eEEEc---cc-----Cc-cCeEE-EEEcCCC-eEEEEeCCCeE
Q 046226          192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-CIETI---QA-----HS-EPINA-LVVADDG-VLYSASDDATV  259 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~---~~-----~~-~~v~~-~~~~~~~-~l~s~~~dg~i  259 (434)
                      -....+....+..+|-.++  ..++.+.+.+-.... ....+   ..     +. ..... ..+..+. ..+....++.+
T Consensus       125 v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i  202 (410)
T PF04841_consen  125 VLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETI  202 (410)
T ss_pred             cccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEE
Confidence            0112222233333442223  234444443322211 11111   11     00 01111 1233333 34444445556


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA  339 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  339 (434)
                      .+.+-.     ....     ....+++..+++||++++++.-..+|.+.+.+.+..+...++.  . ........|.|.|
T Consensus       203 ~~i~~~-----~~~~-----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~--~-~~~~~p~~~~WCG  269 (410)
T PF04841_consen  203 YIIDEN-----SFKQ-----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD--T-DSKSPPKQMAWCG  269 (410)
T ss_pred             EEEEcc-----cccc-----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee--c-CcCCCCcEEEEEC
Confidence            544322     0000     1124689999999999999999999999998754332222221  1 1223445666666


Q ss_pred             C
Q 046226          340 N  340 (434)
Q Consensus       340 ~  340 (434)
                      +
T Consensus       270 ~  270 (410)
T PF04841_consen  270 N  270 (410)
T ss_pred             C
Confidence            5

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.96  E-value=0.001  Score=47.45  Aligned_cols=97  Identities=16%  Similarity=0.242  Sum_probs=65.2

Q ss_pred             EEEEEE---c---CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC-CEEEEEEcCCeEEEeecCCCCCcee
Q 046226           95 ILCIAV---G---NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH-DRVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        95 v~~~~~---~---~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      |++|++   +   .+.|++|+.|..||+|+-.  +.+.++... ..|.++.... ..++.+..+|+|-+|+-.  .....
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence            566666   3   2689999999999999743  566666654 4567776655 489999999999999642  22222


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---C-CEEEEEecCCcEE
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---D-DTLYSASLDKTIK  219 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l~s~~~dg~i~  219 (434)
                      .                       +....+.++++..-   | ..|++|-.+|.|-
T Consensus        77 i-----------------------KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 I-----------------------KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             e-----------------------ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2                       13334666666532   2 3688888888764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.96  E-value=0.0016  Score=46.59  Aligned_cols=101  Identities=19%  Similarity=0.291  Sum_probs=69.4

Q ss_pred             eEEEEEec---C-CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcce
Q 046226          197 ITSIAINV---S-DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       197 v~~~~~~~---~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      |++|++..   + .+.|++|+.|..|++|+-+  +.+..+. ..+.|.++.-...+.++.+..+|+|-+|+-.    ...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~----~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS----QRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc----cee
Confidence            56666654   2 3689999999999999853  5666665 4567888888877899999999999999743    122


Q ss_pred             eEEEEEecccccCeEEEEEec-C--C-CEEEEEcCCCeEEE
Q 046226          273 HTLILTLTAKYSPVKTLTLTL-D--D-GLLYGGCTDGYIHY  309 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~i  309 (434)
                      +...     ....+.++++.. +  | .-|++|-.+|.|-+
T Consensus        75 WRiK-----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   75 WRIK-----SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeec-----cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            2221     122355555543 2  2 36899999998743

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=0.019  Score=53.17  Aligned_cols=111  Identities=14%  Similarity=0.106  Sum_probs=73.1

Q ss_pred             EEEEEcCCC--eEEEE----eCCCe----EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEE
Q 046226          240 NALVVADDG--VLYSA----SDDAT----VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY  309 (434)
Q Consensus       240 ~~~~~~~~~--~l~s~----~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  309 (434)
                      .++.|+-..  .+.+.    +.+|.    -.+|++.   ..+........-.....+.+.+++|+...|+.|+.||.|.+
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~---r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECS---RNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEee---cCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            466666433  44433    23343    2455544   22333333344456678999999999999999999999999


Q ss_pred             EEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          310 WHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       310 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ||.........      ...-....++|+  |..+++|+..|.+.+||+.-.
T Consensus       286 yD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  286 YDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            99754322211      223345667775  669999999999999998643

>PHA02713 hypothetical protein; Provisional

Probab=97.85  E-value=0.0025  Score=61.48  Aligned_cols=192  Identities=6%  Similarity=0.036  Sum_probs=102.1

Q ss_pred             CCCEEEEEecC------CcEEEEEcCCCee--EEEcccCccCeEEEEEcCCCeEEEEeCCC-----eEEEEecccccCcc
Q 046226          205 SDDTLYSASLD------KTIKVWRIRDSKC--IETIQAHSEPINALVVADDGVLYSASDDA-----TVRVWRRYFYSENQ  271 (434)
Q Consensus       205 ~~~~l~s~~~d------g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~  271 (434)
                      ++..++.|+.+      ..+..||..+..-  +..+...... .+++...+...+.||.++     .+..||..    ..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~----~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLAVIDDTIYAIGGQNGTNVERTIECYTMG----DD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEEEECCEEEEECCcCCCCCCceEEEEECC----CC
Confidence            56667777753      3477888876542  1122111111 233333333667777654     47788865    12


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-----------------------eEEEEEcCcccccccccCcccCc
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-----------------------YIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      .+.....+.........+.  -++.+.+.|+.++                       .+..||....  .+.....+...
T Consensus       378 ~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~  453 (557)
T PHA02713        378 KWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTG  453 (557)
T ss_pred             eEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCcc
Confidence            2333222222211122222  2567777776542                       4677776532  33322222222


Q ss_pred             ccceEEEEeeCCEEEEecCCC------cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC
Q 046226          329 THAVMCLASVANYVISGSADS------TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD  402 (434)
Q Consensus       329 ~~~v~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D  402 (434)
                      .........++...+.|+.++      .+..||..+...+..+..+.........+++  +         +.+.+.||.|
T Consensus       454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~---------~~iyv~Gg~~  522 (557)
T PHA02713        454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--D---------NTIMMLHCYE  522 (557)
T ss_pred             cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--C---------CEEEEEeeec
Confidence            222233455677777777542      4678998873356666666554444333333  2         7789999999


Q ss_pred             C--eEEEEecCCCCcc
Q 046226          403 G--VLKMWRVTRPKSS  416 (434)
Q Consensus       403 g--~v~iw~~~~~~~~  416 (434)
                      |  .+..||..+.+-.
T Consensus       523 ~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        523 SYMLQDTFNVYTYEWN  538 (557)
T ss_pred             ceeehhhcCccccccc
Confidence            8  7888888877643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.82  E-value=0.034  Score=53.29  Aligned_cols=114  Identities=11%  Similarity=0.076  Sum_probs=73.4

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCC-ccE----------EEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeE
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT-SMV----------VAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~v----------~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~  169 (434)
                      .+..|++++.++.|.-.|..+++.+.++.... ..+          ..+++..+.++.++.|+.+...|..+++.+....
T Consensus        68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            56778888888999999999999887764321 111          1245566788899999999999998888776654


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe------cCCcEEEEEcCCCeeEEEcc
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS------LDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~  233 (434)
                      .....                  ....+.+--.--++ .++++.      .+|.|..+|.++|+.+..+.
T Consensus       148 ~~~~~------------------~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       148 NGDYK------------------AGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccccc------------------ccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            31110                  00011110000133 445443      26899999999999887754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.74  E-value=0.036  Score=52.72  Aligned_cols=106  Identities=10%  Similarity=-0.030  Sum_probs=69.4

Q ss_pred             CCCEEEEEecCCcEEEEEcCC-----CeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCc-----c-
Q 046226          205 SDDTLYSASLDKTIKVWRIRD-----SKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSEN-----Q-  271 (434)
Q Consensus       205 ~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~-----~-  271 (434)
                      +|++...  .++.|.+.|..+     .+.+..+. -......+.++|||  .++++..+..|.|.|+......     . 
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence            4555554  256789999887     34444443 34456789999999  5556667899999998732210     0 


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      .........- .......+|+++|+...+-.-|..|..||+..
T Consensus       364 ~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        364 RDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            0111222221 23445678899998888888899999999864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.031  Score=51.92  Aligned_cols=221  Identities=12%  Similarity=0.110  Sum_probs=105.1

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCcee
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      ..-....+.+  +|+.+++++ ||.-.|+..........     +.-..+.|.++ .+++-...+.|.++.--.....+.
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence            3445677777  788888854 67777777444343322     23345667664 777777788899963222222222


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD  247 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  247 (434)
                      +.                       ....+..|-.   |.+|+..+ ++.|.+||.++++.+..+...  +|..+.|+++
T Consensus       105 i~-----------------------~~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~  155 (443)
T PF04053_consen  105 IK-----------------------LPFSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDD  155 (443)
T ss_dssp             --------------------------SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred             Ec-----------------------CCcccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence            21                       1112333332   77777776 448999999999999998744  3899999999


Q ss_pred             C-eEEEEeCCCeEEEEecccc-----cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc
Q 046226          248 G-VLYSASDDATVRVWRRYFY-----SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY  321 (434)
Q Consensus       248 ~-~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  321 (434)
                      + +++..+. ..+.+++....     ..................|.+.+|..+  .++-.+.. .|+.+- .   .....
T Consensus       156 g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl~-~---Ge~~~  227 (443)
T PF04053_consen  156 GELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYLV-N---GETGI  227 (443)
T ss_dssp             SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEEE-T---TEEEE
T ss_pred             CCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEEE-c---CCcce
Confidence            8 6655554 46777765421     000000011122222457888888765  44433333 666532 1   11111


Q ss_pred             cCcccCcccceEEEEeeC--CEEEEecCCCcEEEEecc
Q 046226          322 GGALQGHTHAVMCLASVA--NYVISGSADSTSRVWARE  357 (434)
Q Consensus       322 ~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~  357 (434)
                      ...+   ..++.-+...+  +.+.....|+.|..+.+.
T Consensus       228 i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  228 IAHL---DKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEE----SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEEc---CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            1111   12233333334  677777777777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.68  E-value=0.029  Score=49.32  Aligned_cols=211  Identities=9%  Similarity=0.031  Sum_probs=115.3

Q ss_pred             CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEE-EEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226          103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAM-EVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR  181 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l-~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      .++++--..+.|.-|+..+++... +.. .+.+.++ ......++.++..| +.+++.+.+..+..+...   ..+    
T Consensus        38 ~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~~~~---~~~----  107 (307)
T COG3386          38 ALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALIDAGGRLIACEHG-VRLLDPDTGGKITLLAEP---EDG----  107 (307)
T ss_pred             EEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeecCCCeEEEEccc-cEEEeccCCceeEEeccc---cCC----
Confidence            356666677888888877553322 222 2223333 34444555555555 566666433332111100   000    


Q ss_pred             EEEeccccccCcCCCeEEEEEecCCCEEEEEec-----------CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-e
Q 046226          182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-----------DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-V  249 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~  249 (434)
                                ......+.+...|+|.+-++...           -|.|+.+|. .+..+..+..+-..-+.|+|+||+ .
T Consensus       108 ----------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386         108 ----------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             ----------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence                      12245667778888876654332           133444443 466666666666677899999999 4


Q ss_pred             EEEE-eCCCeEEEEecccccCccee-EEEEEecccccCeEEEEEecCCCEEEEEcCCC-eEEEEEcCcccccccccCccc
Q 046226          250 LYSA-SDDATVRVWRRYFYSENQLH-TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-YIHYWHKGWFSAQLQYGGALQ  326 (434)
Q Consensus       250 l~s~-~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~  326 (434)
                      |+.+ +..+.|.-|++......... ..........+..-.++...+|.+-+++..+| .|.+|+.. .+..    ....
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~----~~i~  251 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL----GEIK  251 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE----EEEE
Confidence            4444 45588888877521111111 22222333445666788888888776555554 89999865 2222    2222


Q ss_pred             CcccceEEEEeeC
Q 046226          327 GHTHAVMCLASVA  339 (434)
Q Consensus       327 ~~~~~v~~~~~~~  339 (434)
                      .....+.+++|-|
T Consensus       252 lP~~~~t~~~FgG  264 (307)
T COG3386         252 LPVKRPTNPAFGG  264 (307)
T ss_pred             CCCCCCccceEeC
Confidence            3335567777755

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.00045  Score=65.88  Aligned_cols=109  Identities=14%  Similarity=0.156  Sum_probs=84.6

Q ss_pred             eEEEEEecCCCEEEEEec----CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226          197 ITSIAINVSDDTLYSASL----DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ  271 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~  271 (434)
                      -+-..|+|...+|++++-    .|.|.||- ++|++..... -.-.+++++|+|.. .|+.|-.-|.+.+|...      
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~------   89 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN------   89 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecC------
Confidence            344679999999988753    57888884 5666543322 12235679999999 88888889999999754      


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      ..+.......|..+|..+.|+++|..++++..-|.|.+|.+.
T Consensus        90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            444455566788999999999999999999999999999875

>smart00320 WD40 WD40 repeats

Probab=97.65  E-value=0.0002  Score=40.56  Aligned_cols=37  Identities=16%  Similarity=0.465  Sum_probs=32.5

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK  118 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd  118 (434)
                      ++++..+..|...|.++.|  .++++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4567778889999999999  578999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.64  E-value=0.00016  Score=40.95  Aligned_cols=38  Identities=29%  Similarity=0.518  Sum_probs=33.7

Q ss_pred             eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      .+...+..|...|.++.|.+.         +.++++++.||.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPD---------GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCC---------CCEEEEecCCCeEEEcC
Confidence            456677789999999999988         78999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.63  E-value=0.067  Score=51.31  Aligned_cols=167  Identities=13%  Similarity=0.035  Sum_probs=95.6

Q ss_pred             EEcCCEEEEEeCCCeEEEecCCCceeEeeccCC--Cc--cEE-EEEEeCCEEEEEEc------CCeEEEeecCCCCCcee
Q 046226           99 AVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAK--TS--MVV-AMEVSHDRVYAAYG------DGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        99 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--~~--~v~-~l~~~~~~l~~~s~------dg~i~vwd~~~~~~~~~  167 (434)
                      ++.+..++.++.|+.|...|..+++.+......  ..  .+. .-....+.++++..      +|.|..+|.++++.+..
T Consensus       117 av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       117 ALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             eEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            445567888889999999999999998765431  11  111 11223456666643      68999999999887766


Q ss_pred             eEeeeccCC---CCcee-EEEec-----cccccCcCCCeE-EEEEecCCCEEEEEecC-----C-----------cEEEE
Q 046226          168 VKLATIPKT---GGAVR-NLIVG-----KDKMMKHMGPIT-SIAINVSDDTLYSASLD-----K-----------TIKVW  221 (434)
Q Consensus       168 ~~~~~~~~~---~~~~~-~~~~~-----~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d-----g-----------~i~vw  221 (434)
                      .........   ..... ....+     .+.+..-...+. .+++.+...+++.+..+     +           .|.-.
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl  276 (527)
T TIGR03075       197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR  276 (527)
T ss_pred             ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence            543221100   00000 00000     000000112222 34666666666665421     2           68888


Q ss_pred             EcCCCeeEEEcccCccCeE---------EEEEcCCC----eEEEEeCCCeEEEEecc
Q 046226          222 RIRDSKCIETIQAHSEPIN---------ALVVADDG----VLYSASDDATVRVWRRY  265 (434)
Q Consensus       222 d~~~~~~~~~~~~~~~~v~---------~~~~~~~~----~l~s~~~dg~i~iwd~~  265 (434)
                      |+++|+....++.....+.         -+.+..++    .++.+..+|.+.+.|.+
T Consensus       277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~  333 (527)
T TIGR03075       277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRT  333 (527)
T ss_pred             ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECC
Confidence            9999999888775222211         12222243    57788999999999987

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.62  E-value=0.04  Score=48.45  Aligned_cols=179  Identities=13%  Similarity=0.032  Sum_probs=97.6

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-----CccCeEEEEEcCCCeEEEEeCCC----------
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-----HSEPINALVVADDGVLYSASDDA----------  257 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~s~~~dg----------  257 (434)
                      +.+.+.++.....+..|+++. . -+.+++.+++..+..+..     .....+.+.+.|+|.+..+....          
T Consensus        64 ~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~  141 (307)
T COG3386          64 SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERP  141 (307)
T ss_pred             CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCC
Confidence            444455555544555555554 3 367777765554332221     22456788889999666555441          


Q ss_pred             eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCcccccccc---cCcccCcccce-
Q 046226          258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQLQY---GGALQGHTHAV-  332 (434)
Q Consensus       258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~---~~~~~~~~~~v-  332 (434)
                      .-.+|.+.     ...........+-...+.|+|+||++.|+.+.. .+.|+-|++........-   ........+.. 
T Consensus       142 ~G~lyr~~-----p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD  216 (307)
T COG3386         142 TGSLYRVD-----PDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD  216 (307)
T ss_pred             cceEEEEc-----CCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC
Confidence            11233332     011122223333445678999999988887765 488888887531111000   00111112222 


Q ss_pred             -EEEEeeCCEEEEecCCC-cEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          333 -MCLASVANYVISGSADS-TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       333 -~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                       .++.-+|++.+++-.+| .|.+|+.+ +   +.+..+.-....+++++|--
T Consensus       217 G~~vDadG~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         217 GMAVDADGNLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             ceEEeCCCCEEEecccCCceEEEECCC-C---cEEEEEECCCCCCccceEeC
Confidence             33444566654544444 99999988 5   56666666667778888863

>PHA02713 hypothetical protein; Provisional

Probab=97.56  E-value=0.013  Score=56.60  Aligned_cols=146  Identities=9%  Similarity=0.074  Sum_probs=78.3

Q ss_pred             CCCEEEEEecCC-----cEEEEEcCCCe--eEEEcccCccCeEEEEEcCCC-eEEEEeCCC-------------------
Q 046226          205 SDDTLYSASLDK-----TIKVWRIRDSK--CIETIQAHSEPINALVVADDG-VLYSASDDA-------------------  257 (434)
Q Consensus       205 ~~~~l~s~~~dg-----~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg-------------------  257 (434)
                      +++..+.|+.++     .+..||..+.+  .+..+....... +++.. ++ ..+.||.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEE-CCEEEEEeCCCcccccccccccccccccccc
Confidence            577777787654     47889987653  222222111111 22222 45 666666542                   


Q ss_pred             ----eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC------CeEEEEEcCcccccccccCcccC
Q 046226          258 ----TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD------GYIHYWHKGWFSAQLQYGGALQG  327 (434)
Q Consensus       258 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~  327 (434)
                          .+..||..    ...+.....+....... +++ .-++++.+.|+.+      ..+..||..+. ..+.....+..
T Consensus       429 ~~~~~ve~YDP~----td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~  501 (557)
T PHA02713        429 HSSNKVIRYDTV----NNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTES  501 (557)
T ss_pred             cccceEEEECCC----CCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCc
Confidence                46667755    12233222222111111 122 2246666667654      24677887631 23444444544


Q ss_pred             cccceEEEEeeCCEEEEecCCC--cEEEEeccCC
Q 046226          328 HTHAVMCLASVANYVISGSADS--TSRVWAREQD  359 (434)
Q Consensus       328 ~~~~v~~~~~~~~~l~s~~~dg--~i~iwd~~~~  359 (434)
                      ..........++...++|+.||  .+..||..+.
T Consensus       502 ~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        502 RLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             ccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence            4444555566788899999888  7888888876

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.48  E-value=0.046  Score=52.83  Aligned_cols=225  Identities=12%  Similarity=0.141  Sum_probs=118.5

Q ss_pred             CCEEEEEeCC------CeEEEecCCCcee--EeeccCCCccEEEEEEeCC-EEEEEEcC------CeEEEeecCCCCCce
Q 046226          102 NGFIYTGSDS------NVIRIWKQPEFTE--CGRLKAKTSMVVAMEVSHD-RVYAAYGD------GKIRVWRSTWDNGVK  166 (434)
Q Consensus       102 ~~~l~tg~~d------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~-~l~~~s~d------g~i~vwd~~~~~~~~  166 (434)
                      +.+++.|+.+      ..+..+|..+.+-  ...+. ....-.+++..++ ..++|+.|      .++..||...++...
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            4456666666      3677888776532  22232 2333566677777 44556666      356677766555322


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC-----cEEEEEcCCCe--eEEEcccCccCe
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK-----TIKVWRIRDSK--CIETIQAHSEPI  239 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~--~~~~~~~~~~~v  239 (434)
                      ...+.                    ..........  -+|...++|+.||     +|-.||..+.+  .+..+...... 
T Consensus       364 ~a~M~--------------------~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~-  420 (571)
T KOG4441|consen  364 VAPMN--------------------TKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSG-  420 (571)
T ss_pred             cCCcc--------------------CccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceee-
Confidence            11110                    0111111111  2577888898886     47777776543  22222211111 


Q ss_pred             EEEEEcCCC-eEEEEeCCC------eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-----eE
Q 046226          240 NALVVADDG-VLYSASDDA------TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-----YI  307 (434)
Q Consensus       240 ~~~~~~~~~-~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i  307 (434)
                      .+++.. ++ ..++||.++      .+..||..    ...+.....+........ ++. -++.+.+.|+.|+     +|
T Consensus       421 ~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~----t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~V  493 (571)
T KOG4441|consen  421 HGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPE----TNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSV  493 (571)
T ss_pred             eEEEEE-CCEEEEEcCcCCCccccceEEEEcCC----CCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceE
Confidence            122222 45 667777554      45677755    223333333332222222 222 2567778888776     36


Q ss_pred             EEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCC-----cEEEEeccCC
Q 046226          308 HYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADS-----TSRVWAREQD  359 (434)
Q Consensus       308 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~~~  359 (434)
                      ..||..+  ..+............+.....++...++|+.||     +|..||..+.
T Consensus       494 E~ydp~~--~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  494 ERYDPET--NQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EEEcCCC--CceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence            7787653  333433444444555556667788888898887     4677776654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.00067  Score=62.62  Aligned_cols=94  Identities=18%  Similarity=0.116  Sum_probs=74.2

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE-EEEEcCCC-eEEEEeCCCeEEEEecccccCc
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN-ALVVADDG-VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      -...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|...++ +++|.||| .|+.|-.||+|++.|+....  
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~--   95 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG--   95 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC--
Confidence            34568889999999999999999999999998 788899987887777 99999999 99999999999999987211  


Q ss_pred             ceeEEEEEecccccCeEEEEEe
Q 046226          271 QLHTLILTLTAKYSPVKTLTLT  292 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~  292 (434)
                         ............|.++.|.
T Consensus        96 ---~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   96 ---RLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             ---ceeccccccccchheeecc
Confidence               1111122234567777775

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00058  Score=62.98  Aligned_cols=92  Identities=11%  Similarity=0.062  Sum_probs=70.5

Q ss_pred             CccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeE-EEEEecCCCE
Q 046226          132 TSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT-SIAINVSDDT  208 (434)
Q Consensus       132 ~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~  208 (434)
                      ...|.-+.|+|.  .++.+..+|.|.+..+. -+.+..+.                      -+..+++ +++|.|||+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip----------------------~p~~~v~~sL~W~~DGkl   76 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP----------------------IPGENVTASLCWRPDGKL   76 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc----------------------CCCCccceeeeecCCCCE
Confidence            446788899996  88999999999998876 33333332                      1555666 9999999999


Q ss_pred             EEEEecCCcEEEEEcCCCeeEEEcc-cCccCeEEEEEcC
Q 046226          209 LYSASLDKTIKVWRIRDSKCIETIQ-AHSEPINALVVAD  246 (434)
Q Consensus       209 l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~  246 (434)
                      |++|-.||+|++.|++++..+..+. .-...|.++.|.+
T Consensus        77 laVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   77 LAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            9999999999999999988776632 2345677777753

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.028  Score=51.36  Aligned_cols=143  Identities=10%  Similarity=0.132  Sum_probs=97.8

Q ss_pred             EEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---------EEEEEEcCCeEEEeecCCCCCceeeEeeeccC
Q 046226          105 IYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---------RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPK  175 (434)
Q Consensus       105 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (434)
                      |.++.....++--|++.|+.+.+.+.+.. |.-+.+.|+         .-+.|-.|..|.-||.+-...- .+...    
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~----  422 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVV----  422 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeee----
Confidence            44555556777779999999999988777 666777665         3566777899999998633221 11000    


Q ss_pred             CCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeC
Q 046226          176 TGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD  255 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~  255 (434)
                                 ...-........|.+-.. ..++++|+.+|.|++||--..+....+.+-..+|..+..+.+|..+.|..
T Consensus       423 -----------q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  423 -----------QSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             -----------eccccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence                       000012334456666554 45899999999999999733334445677888999999999996566666


Q ss_pred             CCeEEEEecc
Q 046226          256 DATVRVWRRY  265 (434)
Q Consensus       256 dg~i~iwd~~  265 (434)
                      +..+.+-++.
T Consensus       491 ~tyLlLi~t~  500 (644)
T KOG2395|consen  491 KTYLLLIDTL  500 (644)
T ss_pred             ccEEEEEEEe
Confidence            7788888875

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.0045  Score=56.26  Aligned_cols=139  Identities=14%  Similarity=0.157  Sum_probs=93.7

Q ss_pred             EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC-------EEEEEecCCc
Q 046226          145 VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD-------TLYSASLDKT  217 (434)
Q Consensus       145 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~s~~~dg~  217 (434)
                      +..+.....++-.|++.++.+..++.                      + ..|.-+.+.|+.+       .-+.|-.|..
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~----------------------~-~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~  405 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKF----------------------E-DDINMVDITPDFKFAQLTSEQTLVGLSDNS  405 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeec----------------------c-CCcceeeccCCcchhcccccccEEeecCCc
Confidence            33444455566677777766666642                      2 2266667766532       2345667889


Q ss_pred             EEEEEcCCC-e-eEEEcccC----ccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEE
Q 046226          218 IKVWRIRDS-K-CIETIQAH----SEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTL  291 (434)
Q Consensus       218 i~vwd~~~~-~-~~~~~~~~----~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  291 (434)
                      |.-||.+-. + .+...+.|    .....|.+-..+|++++|+.+|.||+||..      .......+++...+|..+..
T Consensus       406 vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri------~~~AKTAlPgLG~~I~hVdv  479 (644)
T KOG2395|consen  406 VFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI------GRRAKTALPGLGDAIKHVDV  479 (644)
T ss_pred             eEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhh------hhhhhhcccccCCceeeEEe
Confidence            999998732 2 22222222    345678888888899999999999999854      23334456777889999999


Q ss_pred             ecCCCEEEEEcCCCeEEEEEcC
Q 046226          292 TLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       292 ~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      +.+|++|++.| +..+.+.++.
T Consensus       480 tadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  480 TADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eccCcEEEEec-ccEEEEEEEe
Confidence            99999988765 5667776654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.41  E-value=0.029  Score=54.13  Aligned_cols=195  Identities=13%  Similarity=0.164  Sum_probs=105.3

Q ss_pred             EEEEEecCCCEEEEEecC------CcEEEEEcCCCeeE--EEcccCccCeEEEEEcCCC-eEEEEeCCCe-----EEEEe
Q 046226          198 TSIAINVSDDTLYSASLD------KTIKVWRIRDSKCI--ETIQAHSEPINALVVADDG-VLYSASDDAT-----VRVWR  263 (434)
Q Consensus       198 ~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-----i~iwd  263 (434)
                      .++++. ++...++|+.|      ..+..||..+.+-.  ..+...... ..++.. +| ..+.||.||.     +-.||
T Consensus       326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~l-~g~iYavGG~dg~~~l~svE~YD  402 (571)
T KOG4441|consen  326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAVL-DGKLYAVGGFDGEKSLNSVECYD  402 (571)
T ss_pred             ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-ceeEEE-CCEEEEEeccccccccccEEEec
Confidence            344443 46777888888      36778888766522  222222212 123333 45 7888888864     56666


Q ss_pred             cccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC------eEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226          264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG------YIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS  337 (434)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  337 (434)
                      ..    ...+.....+..........  .-+|.+.++|+.++      .+..||..+.  .+.....+............
T Consensus       403 p~----~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~a~~  474 (571)
T KOG4441|consen  403 PV----TNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGVAVL  474 (571)
T ss_pred             CC----CCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceEEEE
Confidence            54    12222222222111111111  22677777777544      5677876533  33333333333333334556


Q ss_pred             eCCEEEEecCCCc-----EEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC-----eEEE
Q 046226          338 VANYVISGSADST-----SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG-----VLKM  407 (434)
Q Consensus       338 ~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-----~v~i  407 (434)
                      ++.+.+.||.|+.     |..||..+. ++..+.........+..+...           +...+.||.||     +|..
T Consensus       475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~~g~~~~~-----------~~ly~vGG~~~~~~l~~ve~  542 (571)
T KOG4441|consen  475 NGKIYVVGGFDGTSALSSVERYDPETN-QWTMVAPMTSPRSAVGVVVLG-----------GKLYAVGGFDGNNNLNTVEC  542 (571)
T ss_pred             CCEEEEECCccCCCccceEEEEcCCCC-ceeEcccCccccccccEEEEC-----------CEEEEEecccCccccceeEE
Confidence            6778888888773     777888875 445554444444444333333           67888888887     4666


Q ss_pred             EecCCCCc
Q 046226          408 WRVTRPKS  415 (434)
Q Consensus       408 w~~~~~~~  415 (434)
                      ||..+.+-
T Consensus       543 ydp~~d~W  550 (571)
T KOG4441|consen  543 YDPETDTW  550 (571)
T ss_pred             cCCCCCce
Confidence            77666543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.11  Score=47.71  Aligned_cols=196  Identities=16%  Similarity=0.150  Sum_probs=121.8

Q ss_pred             EEEEEeCC--EEEEE-EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226          136 VAMEVSHD--RVYAA-YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA  212 (434)
Q Consensus       136 ~~l~~~~~--~l~~~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  212 (434)
                      ..++.++.  .++.. ..++.|.+.|............                       ......++++++++.++++
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-----------------------G~~P~~~~~~~~~~~vYV~  133 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-----------------------GLGPVGLAVDPDGKYVYVA  133 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-----------------------ccCCceEEECCCCCEEEEE
Confidence            45556554  34443 3468899998665554444432                       1256778999999888877


Q ss_pred             ec---CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEE-EeCCCeEEEEecccccCcceeE-EEEEecccccCe
Q 046226          213 SL---DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYS-ASDDATVRVWRRYFYSENQLHT-LILTLTAKYSPV  286 (434)
Q Consensus       213 ~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s-~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~v  286 (434)
                      ..   ++.+.+.|..+.+.+.....-..+ ..+++.|++ .++. -..++.|.+.|...   ..... ............
T Consensus       134 n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~---~~v~~~~~~~~~~~~~~P  209 (381)
T COG3391         134 NAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG---NSVVRGSVGSLVGVGTGP  209 (381)
T ss_pred             ecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC---cceeccccccccccCCCC
Confidence            65   689999999998888875544445 889999999 4444 44789999999651   11110 000011222345


Q ss_pred             EEEEEecCCCEEEEEcCC---CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe-cCCCcEEEEeccCC
Q 046226          287 KTLTLTLDDGLLYGGCTD---GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG-SADSTSRVWAREQD  359 (434)
Q Consensus       287 ~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~  359 (434)
                      ..+.+++++.++++....   +.+...|.............-.. ...-..+.+.|..+.+. ...+.+.+.|..+.
T Consensus       210 ~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         210 AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            678999999977766554   58888887644332221111111 22234556677766666 33578888888775

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.38  E-value=0.05  Score=52.62  Aligned_cols=150  Identities=14%  Similarity=0.088  Sum_probs=79.6

Q ss_pred             eEEEEEecCCCEEEEEecC------------CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 046226          197 ITSIAINVSDDTLYSASLD------------KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWR  263 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd  263 (434)
                      ...-.|+|+|+.+++....            +.+.+.+++.+....   ...+.|..+.|+||| .++... ++.|.+=-
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~  474 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV  474 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence            6667888998877766422            234444444433322   234579999999999 555443 46776632


Q ss_pred             cccccCcceeEE--EEEec-ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC
Q 046226          264 RYFYSENQLHTL--ILTLT-AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN  340 (434)
Q Consensus       264 ~~~~~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  340 (434)
                      +....... ..+  ...+. .....+.++.|..++.++ ++..++.-.+|.+.......... .-......+..++-+..
T Consensus       475 Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        475 VEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS  551 (591)
T ss_pred             EEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc
Confidence            22111111 111  11122 222346889999988854 55555555566543322221110 11112456677776666


Q ss_pred             EEEEecCCCcEEE
Q 046226          341 YVISGSADSTSRV  353 (434)
Q Consensus       341 ~l~s~~~dg~i~i  353 (434)
                      .++....+|.+.+
T Consensus       552 ~iyv~~~~g~~~l  564 (591)
T PRK13616        552 TVYVTDARAVLQL  564 (591)
T ss_pred             eEEEEcCCceEEe
Confidence            6666666764443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.32  E-value=0.1  Score=47.48  Aligned_cols=70  Identities=9%  Similarity=0.032  Sum_probs=43.3

Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc-cC----------------ccCeEEEEEcCCC-eEEEEe-
Q 046226          194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ-AH----------------SEPINALVVADDG-VLYSAS-  254 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~----------------~~~v~~~~~~~~~-~l~s~~-  254 (434)
                      ...+....|+|+|+.++... ++.|.+++..+++..+... +.                -+.-..+.|+||+ +|+... 
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            46688899999999999887 6789999988775433221 10                1123578899999 555443 


Q ss_pred             CCCeEEEEec
Q 046226          255 DDATVRVWRR  264 (434)
Q Consensus       255 ~dg~i~iwd~  264 (434)
                      .+..|..+.+
T Consensus       121 d~~~v~~~~~  130 (353)
T PF00930_consen  121 DEREVPEYPL  130 (353)
T ss_dssp             E-TTS-EEEE
T ss_pred             CCcCCceEEe
Confidence            4444544443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.32  E-value=0.12  Score=47.01  Aligned_cols=51  Identities=10%  Similarity=-0.057  Sum_probs=34.9

Q ss_pred             CCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCC
Q 046226          111 SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWD  162 (434)
Q Consensus       111 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~  162 (434)
                      .+.+.|||+++++....... ...+....|+|+ ..++-..++.|.+++...+
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~   73 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG   73 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTS
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCC
Confidence            46788999998765544333 667888999998 3333334788999987665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.089  Score=44.60  Aligned_cols=264  Identities=11%  Similarity=0.073  Sum_probs=151.4

Q ss_pred             Eeecc-ccEEEEEEcCCEEEEEeCCC--eEEEecCCC---ceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCC
Q 046226           88 VLKKD-GQILCIAVGNGFIYTGSDSN--VIRIWKQPE---FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTW  161 (434)
Q Consensus        88 ~~~h~-~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~  161 (434)
                      +-+|- ..|..+...+.+-..|....  ..-+|+...   ..++..+. -.+-+..+.++.++.+.+-++.-++|.|+.+
T Consensus        37 ~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~-~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~  115 (370)
T COG5276          37 YVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVIN-ARDLFADVRVSEEYVYVADWSSGLRIVDIST  115 (370)
T ss_pred             EeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEe-hhhhhheeEecccEEEEEcCCCceEEEeccC
Confidence            44554 45666666454444443222  233454431   12222222 3456788899999999999999999999987


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC---eeEEEcccCccC
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS---KCIETIQAHSEP  238 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~  238 (434)
                      ..........                    .-.+.-.++..  .|++..++..|.-+.+.|+.+.   +...++......
T Consensus       116 P~sP~~~~~l--------------------nt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d  173 (370)
T COG5276         116 PDSPTLIGFL--------------------NTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGD  173 (370)
T ss_pred             CCCcceeccc--------------------cCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCC
Confidence            6554433210                    11233444444  4899999887777888898654   334444444455


Q ss_pred             eEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226          239 INALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       239 v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  318 (434)
                      -..++++.+ +-..+..|+-+.+.|+...   ....++.... ....+.++..+++..+++..  +--+.+-|....+..
T Consensus       174 ~~~v~ISGn-~AYvA~~d~GL~ivDVSnp---~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp  246 (370)
T COG5276         174 THDVAISGN-YAYVAWRDGGLTIVDVSNP---HSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSP  246 (370)
T ss_pred             ceeEEEecC-eEEEEEeCCCeEEEEccCC---CCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCc
Confidence            567777644 5555667888999998722   2222222222 22367777777665555544  334667777655543


Q ss_pred             ccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226          319 LQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       319 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  381 (434)
                      ..+..--......+..+...+++......+.-+.+-|+.+.........+......-..+..+
T Consensus       247 ~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay  309 (370)
T COG5276         247 TVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY  309 (370)
T ss_pred             eEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe
Confidence            333211112223445567789988888888888888888764433333333222233344444

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.26  E-value=0.043  Score=50.72  Aligned_cols=163  Identities=12%  Similarity=0.079  Sum_probs=90.1

Q ss_pred             ceeEeeccCCCccEEEEEEeCC--EEEEE---EcC-CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC
Q 046226          122 FTECGRLKAKTSMVVAMEVSHD--RVYAA---YGD-GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG  195 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~---s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (434)
                      +.....+......+..-+|+++  .++..   ... ..+.++++..+.......                       ..+
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------------~~g  238 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------------FNG  238 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------------cCC
Confidence            3333334444445566677776  22211   222 458888887766554442                       233


Q ss_pred             CeEEEEEecCCCEEEEE-ecCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCc
Q 046226          196 PITSIAINVSDDTLYSA-SLDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      .-..-+|+|||+.|+-+ ..||  .|++.|+..+. +..+....+.-..=.|+|||  .+++.+..|.-.||-...... 
T Consensus       239 ~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-  316 (425)
T COG0823         239 NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-  316 (425)
T ss_pred             ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-
Confidence            33455799999887744 4555  57777887666 33454333333456789999  555666677766664441111 


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCe--EEEEEcC
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGY--IHYWHKG  313 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~  313 (434)
                      .....  +.  ....-..-.|+|||++++..+. +|.  |.+.|+.
T Consensus       317 ~~~ri--T~--~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         317 QVTRL--TF--SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             ceeEe--ec--cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence            11111  11  1122226678999999887764 344  5555543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.23  E-value=0.058  Score=52.20  Aligned_cols=196  Identities=18%  Similarity=0.187  Sum_probs=99.8

Q ss_pred             CCeEEEEEecCCCEEEEEe------cCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCC-CeEEEEec
Q 046226          195 GPITSIAINVSDDTLYSAS------LDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDD-ATVRVWRR  264 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d-g~i~iwd~  264 (434)
                      ..+...+++|+|+.++..-      .|.  .|.+++.. +.......+  .....-.|+|+| .+++.... ..+++.+-
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678889999999887654      233  56666652 222222222  237788999997 66665433 22333221


Q ss_pred             ccccCcceeEEEE-E--ec-ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc-cccccccc--Cccc-CcccceEEEE
Q 046226          265 YFYSENQLHTLIL-T--LT-AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW-FSAQLQYG--GALQ-GHTHAVMCLA  336 (434)
Q Consensus       265 ~~~~~~~~~~~~~-~--~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~--~~~~-~~~~~v~~~~  336 (434)
                      .  ...+...... .  .. .....|..+.|+|||..++... +|.|++=-+.. ......+.  ..+. +-...+..+.
T Consensus       427 ~--~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        427 P--ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             C--CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence            1  0000000000 0  00 2245799999999999888765 57777732211 11111111  1111 1222346777


Q ss_pred             ee-CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226          337 SV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       337 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                      |. +..|+++..++...+|.+.-.+.......-.....++..++-.+.           .|+....+|.+.+
T Consensus       504 W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-----------~iyv~~~~g~~~l  564 (591)
T PRK13616        504 WRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-----------TVYVTDARAVLQL  564 (591)
T ss_pred             EecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-----------eEEEEcCCceEEe
Confidence            85 334566666665666665543322221111112566777777654           3555566764443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.15  E-value=0.13  Score=45.17  Aligned_cols=231  Identities=14%  Similarity=0.150  Sum_probs=113.4

Q ss_pred             cCCEEEEEe----------CCCeEEEecCCCceeEeeccCCCc-cEEE------EEEeCC--EEEEE--EcCCeEEEeec
Q 046226          101 GNGFIYTGS----------DSNVIRIWKQPEFTECGRLKAKTS-MVVA------MEVSHD--RVYAA--YGDGKIRVWRS  159 (434)
Q Consensus       101 ~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~~~-~v~~------l~~~~~--~l~~~--s~dg~i~vwd~  159 (434)
                      +++.+++++          ....|.+||..+.....++.-..+ ....      ++++.+  ++++.  +--..|.|.|+
T Consensus        46 dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl  125 (342)
T PF06433_consen   46 DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDL  125 (342)
T ss_dssp             TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEET
T ss_pred             CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEEC
Confidence            677777642          345899999999888776544332 2222      233332  22221  12344455555


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcC-CCeeEEE----cc
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIR-DSKCIET----IQ  233 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~-~~~~~~~----~~  233 (434)
                      ...+.+..+..                       . .  |...-|. .+-|.+-|.||.+.-..+. .|+...+    |.
T Consensus       126 ~~~kvv~ei~~-----------------------P-G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~  179 (342)
T PF06433_consen  126 AAKKVVGEIDT-----------------------P-G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD  179 (342)
T ss_dssp             TTTEEEEEEEG-----------------------T-S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred             CCCceeeeecC-----------------------C-C--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence            44433333211                       1 1  1111232 3457788889999888887 4554322    11


Q ss_pred             cCccCe-EEEEEcCC-CeEEEEeCCCeEEEEecccccCcceeEEEEEecc----------cccCeEEEEEecCCCEEEEE
Q 046226          234 AHSEPI-NALVVADD-GVLYSASDDATVRVWRRYFYSENQLHTLILTLTA----------KYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       234 ~~~~~v-~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~  301 (434)
                      ....++ ..-++... +.++-.+.+|.|+--|+...  .  .........          ..+.-.-+++++..+.|++-
T Consensus       180 ~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~--~--~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL  255 (342)
T PF06433_consen  180 PDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD--S--AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL  255 (342)
T ss_dssp             TTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS--S--EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred             CCCcccccccceECCCCeEEEEecCCEEEEEeccCC--c--ccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence            122222 22333333 36666889999998887621  1  111111111          11233457777766555553


Q ss_pred             c--------CCC--eEEEEEcCcccccccccCcccCcccceEEEEeeC--C-EEE-EecCCCcEEEEeccCCCceeeEEE
Q 046226          302 C--------TDG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--N-YVI-SGSADSTSRVWAREQDGRHTMLAV  367 (434)
Q Consensus       302 ~--------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~  367 (434)
                      -        .|+  .|-+||+.+.+.....    .. ...+.+++.+.  + +|+ ....++.+.+||..++   +.+..
T Consensus       256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri----~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG---k~~~~  327 (342)
T PF06433_consen  256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARI----PL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG---KLVRS  327 (342)
T ss_dssp             EEE--TT-TTS-EEEEEEEETTTTEEEEEE----EE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-----EEEE
T ss_pred             ecCCCCCCccCCceEEEEEECCCCeEEEEE----eC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC---cEEee
Confidence            2        123  3555565443332221    11 22455666652  2 554 4456899999999998   55554


Q ss_pred             ee
Q 046226          368 LV  369 (434)
Q Consensus       368 ~~  369 (434)
                      +.
T Consensus       328 ~~  329 (342)
T PF06433_consen  328 IE  329 (342)
T ss_dssp             E-
T ss_pred             hh
Confidence            43

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.003  Score=62.16  Aligned_cols=111  Identities=19%  Similarity=0.373  Sum_probs=81.0

Q ss_pred             CccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE
Q 046226          132 TSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS  211 (434)
Q Consensus       132 ~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  211 (434)
                      ...+.+.+.-...++.|+..|.+-..|..+.-......                     ..-.++|++++|+.+|..++.
T Consensus        89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~n---------------------e~v~~~Vtsvafn~dg~~l~~  147 (1206)
T KOG2079|consen   89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQN---------------------ERVQGPVTSVAFNQDGSLLLA  147 (1206)
T ss_pred             CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcC---------------------CccCCcceeeEecCCCceecc
Confidence            34455555555578888989999888876531100000                     025679999999999999999


Q ss_pred             EecCCcEEEEEcCCCeeEEEcccCccCeEEEEE---cCCC-eEEEEeCCCeEEEEecc
Q 046226          212 ASLDKTIKVWRIRDSKCIETIQAHSEPINALVV---ADDG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       212 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~---~~~~-~l~s~~~dg~i~iwd~~  265 (434)
                      |-.+|.|.+||+..++.++.+..|..+.+.+-+   ..++ .++++...|.  +|.+.
T Consensus       148 G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  148 GLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            999999999999999999988887776665543   3344 7888888886  56543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.07  E-value=0.15  Score=43.25  Aligned_cols=204  Identities=9%  Similarity=0.066  Sum_probs=109.4

Q ss_pred             EeeccccEEEEEE--c-CCEEEEEeCCCeEEEecCCCceeEeeccCC-CccEEEEEEeCC-EEEEEEc-CCeEEEeecCC
Q 046226           88 VLKKDGQILCIAV--G-NGFIYTGSDSNVIRIWKQPEFTECGRLKAK-TSMVVAMEVSHD-RVYAAYG-DGKIRVWRSTW  161 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~-~l~~~s~-dg~i~vwd~~~  161 (434)
                      +.+-...+..++|  + +.++++....+.|...+. +++.+.++.-. -+-.-.|++..+ .++.... ++.+.++++..
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            3344456999999  3 557777888889988886 57777776533 245788888876 5555554 89999998854


Q ss_pred             CCCc-eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC---CeeEEE--c---
Q 046226          162 DNGV-KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD---SKCIET--I---  232 (434)
Q Consensus       162 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~--~---  232 (434)
                      .... ......          .+..+  ....++..+..++|.+.++.|+.+.+..-..+|.+..   ...+..  .   
T Consensus        96 ~~~~~~~~~~~----------~~~l~--~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~  163 (248)
T PF06977_consen   96 DTTSLDRADVQ----------KISLG--FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL  163 (248)
T ss_dssp             --TT--EEEEE----------EEE-----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH
T ss_pred             cccccchhhce----------EEecc--cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccc
Confidence            3221 111100          01100  0013667799999999988888888887777777653   111111  1   


Q ss_pred             ---ccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecc-------cccCeEEEEEecCCCEEEE
Q 046226          233 ---QAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-------KYSPVKTLTLTLDDGLLYG  300 (434)
Q Consensus       233 ---~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~  300 (434)
                         ......+.+++++|..  +++....+..|..+|..   +. ... ...+..       .-.....|+|.++|++.++
T Consensus       164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~---G~-~~~-~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ---GR-VVS-SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT------EEE-EEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC---CC-EEE-EEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence               1133457889999876  77777888899999854   11 111 222222       1135788999999866555


Q ss_pred             EcCCCeEEEE
Q 046226          301 GCTDGYIHYW  310 (434)
Q Consensus       301 ~~~dg~i~i~  310 (434)
                      + +-+..++|
T Consensus       239 s-EpNlfy~f  247 (248)
T PF06977_consen  239 S-EPNLFYRF  247 (248)
T ss_dssp             E-TTTEEEEE
T ss_pred             c-CCceEEEe
Confidence            4 55544444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.01  E-value=0.25  Score=44.79  Aligned_cols=197  Identities=11%  Similarity=0.068  Sum_probs=85.9

Q ss_pred             CCEEEEEe-CCCeEEEecCCC----ceeEeeccC---CC----ccEEEEEEeCC--EEEEEEc------CCeEEEeecCC
Q 046226          102 NGFIYTGS-DSNVIRIWKQPE----FTECGRLKA---KT----SMVVAMEVSHD--RVYAAYG------DGKIRVWRSTW  161 (434)
Q Consensus       102 ~~~l~tg~-~dg~i~iwd~~~----~~~~~~~~~---~~----~~v~~l~~~~~--~l~~~s~------dg~i~vwd~~~  161 (434)
                      .++|+..+ ..+.|.|.|+.+    -+..+.+..   +.    ..-..+..-|+  .++++-.      -|.+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            55676666 678999999874    333343332   11    11122222333  3444322      25566666554


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe--------------------cCCcEEEE
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS--------------------LDKTIKVW  221 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--------------------~dg~i~vw  221 (434)
                      .+.....+...                   +...--.++-+.|..+.+++..                    ...++.+|
T Consensus       167 f~v~g~We~~~-------------------~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vW  227 (461)
T PF05694_consen  167 FEVKGRWEKDR-------------------GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVW  227 (461)
T ss_dssp             --EEEE--SB--------------------TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEE
T ss_pred             ccccceeccCC-------------------CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEE
Confidence            43333332110                   1122334555566666665543                    24689999


Q ss_pred             EcCCCeeEEEcccCc--cCeEEEEEcCC--C--eEEEEeCCCeEEEEecccccCcceeEEEEEeccc-------------
Q 046226          222 RIRDSKCIETIQAHS--EPINALVVADD--G--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK-------------  282 (434)
Q Consensus       222 d~~~~~~~~~~~~~~--~~v~~~~~~~~--~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------  282 (434)
                      |+.+.+.++++....  .....|.|..+  .  -++.+.-..+|..|-... .+.-..+.+..+...             
T Consensus       228 D~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-~g~W~a~kVi~ip~~~v~~~~lp~ml~~  306 (461)
T PF05694_consen  228 DWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-DGEWAAEKVIDIPAKKVEGWILPEMLKP  306 (461)
T ss_dssp             ETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-TTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred             ECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-CCCeeeeEEEECCCcccCcccccccccc
Confidence            999999999887543  24556766533  3  344444445555543211 111112222222111             


Q ss_pred             ----ccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCccccc
Q 046226          283 ----YSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       283 ----~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~  318 (434)
                          ..-|+.|.+|.|+++|++.+ ..|.|+.||+......
T Consensus       307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence                23478999999999988765 4899999999865443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.2  Score=42.53  Aligned_cols=279  Identities=13%  Similarity=0.071  Sum_probs=163.3

Q ss_pred             ccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEe---eccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCcee
Q 046226           91 KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECG---RLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        91 h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      -.+.+..+.+.+++++.+..+.-++|.|+.+.....   .+. -.+--.++..+.++.+.+..|.-+.+.|+........
T Consensus        85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence            345566777789999999999999999997644332   222 2256688888999888888777788899876544332


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe---eEEEcccCccCeEEEEE
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK---CIETIQAHSEPINALVV  244 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~  244 (434)
                      .-...                   .....-..++.+  |++-+.+..|+-+.+-|+....   .+.... ....+.++..
T Consensus       164 agrya-------------------~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~v  221 (370)
T COG5276         164 AGRYA-------------------LPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSV  221 (370)
T ss_pred             eeeec-------------------cCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEe
Confidence            21111                   122333566665  8888888899999999996543   222222 2337888888


Q ss_pred             cCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc
Q 046226          245 ADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA  324 (434)
Q Consensus       245 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  324 (434)
                      +++--+++....| +.+-|...   .......-. .....++..-.+.-.+++......+.-+.+-|+......... ..
T Consensus       222 sdnr~y~vvy~eg-vlivd~s~---~ssp~~~gs-yet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~-ss  295 (370)
T COG5276         222 SDNRAYLVVYDEG-VLIVDVSG---PSSPTVFGS-YETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLS-SS  295 (370)
T ss_pred             cCCeeEEEEcccc-eEEEecCC---CCCceEeec-cccCCcccccceecccceeeeeccccCceeEeccCCCCCchh-cc
Confidence            8776344333333 55556551   111111111 122222222133335678888888888888888654433221 12


Q ss_pred             ccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCe
Q 046226          325 LQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV  404 (434)
Q Consensus       325 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~  404 (434)
                      +......-..+...++++..+..+ ...+-+....   +......+....+.+.+.+-+         .+.+.+...++.
T Consensus       296 ~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~---s~m~~~~g~~ti~~s~~v~~~---------~q~~y~~d~~~g  362 (370)
T COG5276         296 LDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPP---SMMDKRPGRPTIGQSCDVSVD---------TQIIYSTDYNGG  362 (370)
T ss_pred             ccCCCccccceEEecCeeEeccCC-ceEEEeCCCh---hhcccccCcceEeeecceEEE---------eeEEEEeecCCC
Confidence            222222345566677877777666 5555565543   111111222222333333333         568888999999


Q ss_pred             EEEEecC
Q 046226          405 LKMWRVT  411 (434)
Q Consensus       405 v~iw~~~  411 (434)
                      +.||+..
T Consensus       363 l~i~~~~  369 (370)
T COG5276         363 LSIIEYL  369 (370)
T ss_pred             EEEEEec
Confidence            9999863

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.91  E-value=0.0031  Score=51.00  Aligned_cols=137  Identities=17%  Similarity=0.190  Sum_probs=79.6

Q ss_pred             EEeCCCeEEEecCCCceeEee-ccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226          107 TGSDSNVIRIWKQPEFTECGR-LKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV  185 (434)
Q Consensus       107 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
                      .-+.||.|+-+++...+.-.+ -..+... ..+.-....+++|+.+|.|.+|.............               
T Consensus        35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~---------------   98 (238)
T KOG2444|consen   35 ATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVC---------------   98 (238)
T ss_pred             cccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhh---------------
Confidence            345678887777654332211 1111111 22222234789999999999998763222111100               


Q ss_pred             ccccccCcCCCeEE-EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc-cCeEEEEEcCCC-eEEEE--eCCCeEE
Q 046226          186 GKDKMMKHMGPITS-IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS-EPINALVVADDG-VLYSA--SDDATVR  260 (434)
Q Consensus       186 ~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~s~--~~dg~i~  260 (434)
                            .-...|.+ |.-..++.+..+++.||.|+.|++.-.+.+.....|. .++..+.....+ .+..+  +.|..++
T Consensus        99 ------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k  172 (238)
T KOG2444|consen   99 ------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLK  172 (238)
T ss_pred             ------cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhh
Confidence                  11122222 2223355688899999999999999888777776676 444444444333 66666  7777788


Q ss_pred             EEecc
Q 046226          261 VWRRY  265 (434)
Q Consensus       261 iwd~~  265 (434)
                      .|++.
T Consensus       173 ~W~ve  177 (238)
T KOG2444|consen  173 KWNVE  177 (238)
T ss_pred             hcchh
Confidence            88765

>PHA03098 kelch-like protein; Provisional

Probab=96.91  E-value=0.12  Score=50.14  Aligned_cols=190  Identities=8%  Similarity=0.043  Sum_probs=88.9

Q ss_pred             cCCCEEEEEecCC------cEEEEEcCCCeeEEE--cccCccCeEEEEEcCCCeEEEEeCC-----CeEEEEecccccCc
Q 046226          204 VSDDTLYSASLDK------TIKVWRIRDSKCIET--IQAHSEPINALVVADDGVLYSASDD-----ATVRVWRRYFYSEN  270 (434)
Q Consensus       204 ~~~~~l~s~~~dg------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~  270 (434)
                      .++..++.|+.++      .+..||..+.+-...  +....... +++...+..++.||.+     ..+..||...    
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~----  367 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFNNRIYVIGGIYNSISLNTVESWKPGE----  367 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEECCEEEEEeCCCCCEecceEEEEcCCC----
Confidence            3456666666542      577888876553221  11111111 2233323366677755     3466677651    


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEcCC------CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEE
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD------GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVIS  344 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s  344 (434)
                      ..+.....+....... +++ .-+++..+.|+.+      ..+..||..+.  .+.....+........+...++..++.
T Consensus       368 ~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~iyv~  443 (534)
T PHA03098        368 SKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYGGCAIYHDGKIYVI  443 (534)
T ss_pred             CceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccCceEEEECCEEEEE
Confidence            1222221111111111 122 2256666666632      45788887643  222222222111112233445666666


Q ss_pred             ecCCC--------cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-----CeEEEEecC
Q 046226          345 GSADS--------TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-----GVLKMWRVT  411 (434)
Q Consensus       345 ~~~dg--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~iw~~~  411 (434)
                      |+.++        .+.+||..+. .+..+..+....... +++.. +         +.+++.||.+     ..|.++|..
T Consensus       444 GG~~~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~r~~~-~~~~~-~---------~~iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        444 GGISYIDNIKVYNIVESYNPVTN-KWTELSSLNFPRINA-SLCIF-N---------NKIYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             CCccCCCCCcccceEEEecCCCC-ceeeCCCCCcccccc-eEEEE-C---------CEEEEEcCCcCCcccceeEEEeCC
Confidence            76432        3888898875 233332222111111 12222 3         6677777764     478888877


Q ss_pred             CCC
Q 046226          412 RPK  414 (434)
Q Consensus       412 ~~~  414 (434)
                      +.+
T Consensus       512 ~~~  514 (534)
T PHA03098        512 TNT  514 (534)
T ss_pred             CCE
Confidence            654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.043  Score=54.55  Aligned_cols=108  Identities=15%  Similarity=0.257  Sum_probs=74.2

Q ss_pred             cccEEEEEEcCCEEEEEeCCCeEEEecCCCc-eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceee
Q 046226           92 DGQILCIAVGNGFIYTGSDSNVIRIWKQPEF-TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHV  168 (434)
Q Consensus        92 ~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~  168 (434)
                      ...+.+.+..+..++.|++.|.|-..|+... .....-..-.++|.+++|+.+  .++.|-.+|.|.+||+..++..+.+
T Consensus        89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen   89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI  168 (1206)
T ss_pred             CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence            4456666668888999999999998887542 111222234678999999987  6777778999999999887777666


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCC---eEEEEEecCCCEEEEEecCCcEEEEEc
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGP---ITSIAINVSDDTLYSASLDKTIKVWRI  223 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~s~~~dg~i~vwd~  223 (434)
                      ..                      |..+   |..+.+..++..++++...|.  +|.+
T Consensus       169 ~e----------------------~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  169 TE----------------------HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ee----------------------cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            43                      3333   333334445567788877776  5554

>PHA02790 Kelch-like protein; Provisional

Probab=96.89  E-value=0.14  Score=48.71  Aligned_cols=185  Identities=9%  Similarity=0.058  Sum_probs=90.3

Q ss_pred             CCCEEEEEecCC-----cEEEEEcCCCeeEE--EcccCccCeEEEEEcCCC-eEEEEeCC--CeEEEEecccccCcceeE
Q 046226          205 SDDTLYSASLDK-----TIKVWRIRDSKCIE--TIQAHSEPINALVVADDG-VLYSASDD--ATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       205 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~s~~~d--g~i~iwd~~~~~~~~~~~  274 (434)
                      ++..+++|+.++     .+..||..+.+-..  .+...... .+++.. ++ ..+.||.+  ..+..||..    ...+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~-~~~iYviGG~~~~~sve~ydp~----~n~W~  344 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVPA-NNKLYVVGGLPNPTSVERWFHG----DAAWV  344 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEEE-CCEEEEECCcCCCCceEEEECC----CCeEE
Confidence            455566776543     46678877654322  22211111 222333 45 66666653  357777754    12232


Q ss_pred             EEEEecccccCeEEEEEecCCCEEEEEcCCC---eEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcE
Q 046226          275 LILTLTAKYSPVKTLTLTLDDGLLYGGCTDG---YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTS  351 (434)
Q Consensus       275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i  351 (434)
                      ....+....... ++ ..-+|+..+.|+.++   .+..||.++.  .+.....+............++...+.|+   .+
T Consensus       345 ~~~~l~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~  417 (480)
T PHA02790        345 NMPSLLKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVGR---NA  417 (480)
T ss_pred             ECCCCCCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEECCEEEEECC---ce
Confidence            222222111111 12 223567777776543   4677886532  33332222222222233345566666664   57


Q ss_pred             EEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-----CeEEEEecCCCC
Q 046226          352 RVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-----GVLKMWRVTRPK  414 (434)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~iw~~~~~~  414 (434)
                      .+||.+++ .+..+..+........ ++.. +         +++.+.||.+     ..|..||..+.+
T Consensus       418 e~ydp~~~-~W~~~~~m~~~r~~~~-~~v~-~---------~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        418 EFYCESSN-TWTLIDDPIYPRDNPE-LIIV-D---------NKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             EEecCCCC-cEeEcCCCCCCccccE-EEEE-C---------CEEEEECCcCCCcccceEEEEECCCCe
Confidence            78998765 4454444332222222 2222 2         6788888865     357777776554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.83  E-value=0.53  Score=47.12  Aligned_cols=124  Identities=9%  Similarity=0.027  Sum_probs=74.1

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCcc--------EEEEEEe------------------CCEEEEEEcCCeE
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSM--------VVAMEVS------------------HDRVYAAYGDGKI  154 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~l~~~------------------~~~l~~~s~dg~i  154 (434)
                      .++.|+.++.++.|.-.|..+++.+.++......        ...+.+.                  .+.++.++.|+.+
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            5778888888999999999999988876543211        1223332                  2378899999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec--CCCEEEEEec----------CCcEEEEE
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV--SDDTLYSASL----------DKTIKVWR  222 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~----------dg~i~vwd  222 (434)
                      .-.|.++++.+..+....      .+. +.....   .....-..+.-.|  .+..+++|+.          +|.|+-+|
T Consensus       273 iALDA~TGk~~W~fg~~G------~vd-l~~~~g---~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D  342 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNG------TVD-LTAGMG---TTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD  342 (764)
T ss_pred             EEEECCCCCEEEEecCCC------cee-eecccC---cCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence            999998888776552110      000 000000   0000000000001  1345555532          68899999


Q ss_pred             cCCCeeEEEccc
Q 046226          223 IRDSKCIETIQA  234 (434)
Q Consensus       223 ~~~~~~~~~~~~  234 (434)
                      +++|+.+..+..
T Consensus       343 a~TGkl~W~~~~  354 (764)
T TIGR03074       343 VNTGALVWAWDP  354 (764)
T ss_pred             CCCCcEeeEEec
Confidence            999999988763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.72  E-value=0.0051  Score=36.63  Aligned_cols=35  Identities=11%  Similarity=0.149  Sum_probs=30.6

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC  228 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  228 (434)
                      ....|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            4457999999999999999999999999998 5544

>PHA03098 kelch-like protein; Provisional

Probab=96.69  E-value=0.22  Score=48.27  Aligned_cols=157  Identities=9%  Similarity=0.017  Sum_probs=73.0

Q ss_pred             CCCEEEEEecC-----CcEEEEEcCCCeeE--EEcccCccCeEEEEEcCCCeEEEEeCC------CeEEEEecccccCcc
Q 046226          205 SDDTLYSASLD-----KTIKVWRIRDSKCI--ETIQAHSEPINALVVADDGVLYSASDD------ATVRVWRRYFYSENQ  271 (434)
Q Consensus       205 ~~~~l~s~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~  271 (434)
                      ++..++.|+.+     ..+..||..+.+-.  ..+...... .+++...+..++.||.+      ..+..||+..    .
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t----~  416 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNT----N  416 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEECCEEEEECCcCCCCcccceEEEEeCCC----C
Confidence            56677777755     35777887765421  111111111 12233333356666632      3577888651    1


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCC--------CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD--------GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI  343 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  343 (434)
                      .+............. ++ ..-++..++.|+.+        ..+.+||..+.  .+.....+.........+..++..++
T Consensus       417 ~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv  492 (534)
T PHA03098        417 KWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLNFPRINASLCIFNNKIYV  492 (534)
T ss_pred             eeeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCCcccccceEEEECCEEEE
Confidence            222222111111111 22 22355666666543        23788887643  22222222111111223344667777


Q ss_pred             EecCC-----CcEEEEeccCCCceeeEEEeecc
Q 046226          344 SGSAD-----STSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       344 s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                      .|+.+     ..+.+||..+. .+..+..+...
T Consensus       493 ~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~  524 (534)
T PHA03098        493 VGGDKYEYYINEIEVYDDKTN-TWTLFCKFPKV  524 (534)
T ss_pred             EcCCcCCcccceeEEEeCCCC-EEEecCCCccc
Confidence            77754     46888888765 33444433333

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.60  E-value=0.061  Score=49.79  Aligned_cols=159  Identities=13%  Similarity=0.082  Sum_probs=88.4

Q ss_pred             cCCCeEEEEEecCCCEEEEE---ecC-CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEeccc
Q 046226          193 HMGPITSIAINVSDDTLYSA---SLD-KTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYF  266 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~---~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~  266 (434)
                      -...+..-+|+|++..++-.   ... ..+.++|+++++....+. ..+.-..-.|+|||  ++++...||...+|-+..
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            34456667888888776543   222 459999999886544443 23334456899999  666777777765554331


Q ss_pred             ccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCe--EEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226          267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGY--IHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI  343 (434)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  343 (434)
                      .... ..    .+....+.-..=.|+|||+.++..+. .|.  |.++|.+..... .+  +..+.......++.+|++++
T Consensus       270 ~~~~-~~----~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-ri--T~~~~~~~~p~~SpdG~~i~  341 (425)
T COG0823         270 DGKN-LP----RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RL--TFSGGGNSNPVWSPDGDKIV  341 (425)
T ss_pred             CCCc-ce----ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Ee--eccCCCCcCccCCCCCCEEE
Confidence            1221 11    12222233335578999998776644 554  445554432221 11  22222222344556788777


Q ss_pred             EecC-CCc--EEEEeccCCC
Q 046226          344 SGSA-DST--SRVWAREQDG  360 (434)
Q Consensus       344 s~~~-dg~--i~iwd~~~~~  360 (434)
                      ..+. +|.  |.+.|+.++.
T Consensus       342 ~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         342 FESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EEeccCCceeeEEeccCCCC
Confidence            6654 344  6666776653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.56  E-value=0.67  Score=43.33  Aligned_cols=200  Identities=10%  Similarity=0.087  Sum_probs=105.7

Q ss_pred             eEEEEEecCCCEEEEE-ecCC----cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCC----------CeE
Q 046226          197 ITSIAINVSDDTLYSA-SLDK----TIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDD----------ATV  259 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~d----------g~i  259 (434)
                      +....++|++++++.+ +..|    .|+++|+++++.+...-... ....+.|.+++  ++.+...+          ..|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467889999998855 3334    59999999998765432111 22249999997  44444332          236


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC---C-CeEEEEEcCcc---cccccccCcccCcccce
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---D-GYIHYWHKGWF---SAQLQYGGALQGHTHAV  332 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~---~~~~~~~~~~~~~~~~v  332 (434)
                      +.|++.  .....-..+............+..++++++|+....   + ..+.+.|+...   ......  ......+..
T Consensus       205 ~~~~~g--t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~--l~~~~~~~~  280 (414)
T PF02897_consen  205 YRHKLG--TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL--LSPREDGVE  280 (414)
T ss_dssp             EEEETT--S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE--EEESSSS-E
T ss_pred             EEEECC--CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE--EeCCCCceE
Confidence            677665  222222233333222222667888999998876433   2 45777777643   112221  111122222


Q ss_pred             EEEEeeCCEEEEec----CCCcEEEEeccCCCceeeEEEeecccc--ceeEEEEeecccCCCCCCcccEEEEeecCC--e
Q 046226          333 MCLASVANYVISGS----ADSTSRVWAREQDGRHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICTGSLDG--V  404 (434)
Q Consensus       333 ~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg--~  404 (434)
                      ..+...+..+..-+    .++.|...++...........+..|..  .+..+....          +.+++..-.++  .
T Consensus       281 ~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~----------~~Lvl~~~~~~~~~  350 (414)
T PF02897_consen  281 YYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK----------DYLVLSYRENGSSR  350 (414)
T ss_dssp             EEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET----------TEEEEEEEETTEEE
T ss_pred             EEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC----------CEEEEEEEECCccE
Confidence            33444466333322    245677777777643122335555655  355555442          34566666665  4


Q ss_pred             EEEEecC
Q 046226          405 LKMWRVT  411 (434)
Q Consensus       405 v~iw~~~  411 (434)
                      |+++++.
T Consensus       351 l~v~~~~  357 (414)
T PF02897_consen  351 LRVYDLD  357 (414)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            7788888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.49  E-value=0.37  Score=39.56  Aligned_cols=216  Identities=10%  Similarity=0.098  Sum_probs=112.9

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEe-eccCCCccEEEEEE--e--CCEEEEEEc-CCeEEEeecCCCCCceeeEeeecc
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECG-RLKAKTSMVVAMEV--S--HDRVYAAYG-DGKIRVWRSTWDNGVKHVKLATIP  174 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~--~--~~~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~  174 (434)
                      .+.++++--..|.|.-||+++.+... .+.+.  ++.++.+  .  |...++++. .-.|.-||......+....+.++.
T Consensus        26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~  103 (310)
T KOG4499|consen   26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ  103 (310)
T ss_pred             cceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence            45566666667777779987744322 23322  1222222  1  223333333 333445664432222111111111


Q ss_pred             CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec----------CCcEEEEEcCCCeeEEEcccCccCeEEEEE
Q 046226          175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL----------DKTIKVWRIRDSKCIETIQAHSEPINALVV  244 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  244 (434)
                      ..               ......++-..+|+|+++ .|..          .|.++.|-..  ..+..+...-.--+.++|
T Consensus       104 ~d---------------~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~W  165 (310)
T KOG4499|consen  104 PD---------------RKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAW  165 (310)
T ss_pred             ch---------------HHhcccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccc
Confidence            00               123455666778999884 3432          2344444432  122222223334467888


Q ss_pred             cCCC--eEEEEeCCCeEEEEecccccCcce-eEEEEEecc----cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          245 ADDG--VLYSASDDATVRVWRRYFYSENQL-HTLILTLTA----KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       245 ~~~~--~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      +.+.  +.++-+.+-.|.-||.....+... ...+..+..    .....-.+++..+|++.++.-..++|..+|..+.+.
T Consensus       166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI  245 (310)
T ss_pred             cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence            8776  566677788888888542222211 112222211    111233456677888888888899999999876665


Q ss_pred             cccccCcccCcccceEEEEeeCC
Q 046226          318 QLQYGGALQGHTHAVMCLASVAN  340 (434)
Q Consensus       318 ~~~~~~~~~~~~~~v~~~~~~~~  340 (434)
                      ..+.    .-....|++++|-|.
T Consensus       246 L~ei----klPt~qitsccFgGk  264 (310)
T KOG4499|consen  246 LLEI----KLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEE----EcCCCceEEEEecCC
Confidence            5443    233668899999765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.48  E-value=0.01  Score=35.30  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=29.5

Q ss_pred             ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          372 RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       372 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ...|..+.|+|.         ..+||.+..||.|.++++ ++++
T Consensus        11 ~~~v~~~~w~P~---------mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPT---------MDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCC---------CCEEEEEECCCeEEEEEC-CCcC
Confidence            456899999999         899999999999999999 4443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.44  E-value=1.2  Score=44.64  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=74.9

Q ss_pred             EEEEecC-CCEEEEEcC----------CCeEEEEEcCcccccccccCcccCcccceEEE-EeeCCEEEEecCCCcEEEEe
Q 046226          288 TLTLTLD-DGLLYGGCT----------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL-ASVANYVISGSADSTSRVWA  355 (434)
Q Consensus       288 ~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~s~~~dg~i~iwd  355 (434)
                      +..|..| +.++++|+.          .|.|.+|.+.. ....+...... -.+.+.++ .|+|+++|.-  +..|++|+
T Consensus       779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~-v~Gav~aL~~fngkllA~I--n~~vrLye  854 (1096)
T KOG1897|consen  779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETV-VKGAVYALVEFNGKLLAGI--NQSVRLYE  854 (1096)
T ss_pred             eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeee-eccceeehhhhCCeEEEec--CcEEEEEE
Confidence            3446665 667777753          67888888764 22333222111 12344454 3567777654  56899999


Q ss_pred             ccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          356 REQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      ..+.   +.++.-..|..++..+...-.         +..++.|..-+.|.+-.....+
T Consensus       855 ~t~~---~eLr~e~~~~~~~~aL~l~v~---------gdeI~VgDlm~Sitll~y~~~e  901 (1096)
T KOG1897|consen  855 WTTE---RELRIECNISNPIIALDLQVK---------GDEIAVGDLMRSITLLQYKGDE  901 (1096)
T ss_pred             cccc---ceehhhhcccCCeEEEEEEec---------CcEEEEeeccceEEEEEEeccC
Confidence            9886   566666678888888888877         8899999999998887776555

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.43  E-value=0.58  Score=41.07  Aligned_cols=157  Identities=10%  Similarity=0.079  Sum_probs=75.8

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcce
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      -.+.+..+.-+++|++++++.......-||-....-...-..-...|..|.|.+++.|......|.|+.=+..  .....
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~--~~~~~  220 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDP--DDGET  220 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T--TEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCC--CCccc
Confidence            4467888888999999988876555667875432111222224578999999999955556688989887621  01111


Q ss_pred             eEE-EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe-eCCEEEEecCCCc
Q 046226          273 HTL-ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-VANYVISGSADST  350 (434)
Q Consensus       273 ~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~  350 (434)
                      ... ........-.+..++|.+++...++|+. |.+.+ ..+. ....+.......-......+.| +++.-.+.+.+|.
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~Dg-GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~  297 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDG-GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV  297 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESST-TSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCC-CccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence            111 1111122334789999988777776654 44433 2221 2222222222222334566666 4556566667887


Q ss_pred             EEEE
Q 046226          351 SRVW  354 (434)
Q Consensus       351 i~iw  354 (434)
                      |.-|
T Consensus       298 ll~~  301 (302)
T PF14870_consen  298 LLRY  301 (302)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7655

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.38  E-value=1.2  Score=44.27  Aligned_cols=70  Identities=17%  Similarity=0.125  Sum_probs=46.9

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEEcCC----------Cee---EEEc--------ccCccCeEEEEEcCCC----e
Q 046226          195 GPITSIAINVSDDTLYSASLDKTIKVWRIRD----------SKC---IETI--------QAHSEPINALVVADDG----V  249 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~----------~~~---~~~~--------~~~~~~v~~~~~~~~~----~  249 (434)
                      -.|..|.++++|.+++..+..| |.|..+..          |+.   .+.+        ..+...|..+.|+|.+    .
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3688999999999999888766 44444421          111   1111        1234467788888763    7


Q ss_pred             EEEEeCCCeEEEEecc
Q 046226          250 LYSASDDATVRVWRRY  265 (434)
Q Consensus       250 l~s~~~dg~i~iwd~~  265 (434)
                      |+.-..|+.+|+||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            7788888888888875

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.33  E-value=0.76  Score=41.37  Aligned_cols=189  Identities=7%  Similarity=-0.059  Sum_probs=80.4

Q ss_pred             cCCEEEE-EeCCC--eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccC
Q 046226          101 GNGFIYT-GSDSN--VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPK  175 (434)
Q Consensus       101 ~~~~l~t-g~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (434)
                      +|+.|+. +..||  .+.+.|+.+++..+.-.+.........++++  .++-......|+-.|+.+.+....+.+   + 
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~---p-  121 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV---P-  121 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE------
T ss_pred             CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC---C-
Confidence            5655544 44455  6777799888766544432222223444554  555455566788888877654332221   1 


Q ss_pred             CCCceeEEEeccccccCcCCCeEEEEEe--cCCCEEEEE----------------------ecCCcEEEEEcCCCeeEEE
Q 046226          176 TGGAVRNLIVGKDKMMKHMGPITSIAIN--VSDDTLYSA----------------------SLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~----------------------~~dg~i~vwd~~~~~~~~~  231 (434)
                                        ...+-...|.  .++..++-.                      --...|.-.|+.+|+....
T Consensus       122 ------------------~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v  183 (386)
T PF14583_consen  122 ------------------DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV  183 (386)
T ss_dssp             ------------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE
T ss_pred             ------------------cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE
Confidence                              1111112221  223322211                      1134566677877775444


Q ss_pred             cccCccCeEEEEEcCCC--eEEEEeC---CCe-EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE----
Q 046226          232 IQAHSEPINALVVADDG--VLYSASD---DAT-VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG----  301 (434)
Q Consensus       232 ~~~~~~~v~~~~~~~~~--~l~s~~~---dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----  301 (434)
                      +. ....+..+.++|..  +|+-|-+   +.. -|||-++...  .....+... .....+..=-|.+||..|.--    
T Consensus       184 ~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~  259 (386)
T PF14583_consen  184 FE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--SNVKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTP  259 (386)
T ss_dssp             EE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----TTEEEEEEEE-TTSS-EEEEEEET
T ss_pred             Ee-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--CcceeeecC-CCCcccccccccCCCCEEEEEeecC
Confidence            43 45677888999877  4544432   221 3677665211  111111111 112334445678888765542    


Q ss_pred             -cCCCeEEEEEcCcc
Q 046226          302 -CTDGYIHYWHKGWF  315 (434)
Q Consensus       302 -~~dg~i~i~d~~~~  315 (434)
                       ..+..|.-+|+.+.
T Consensus       260 ~~~~~~i~~~d~~t~  274 (386)
T PF14583_consen  260 GGQDFWIAGYDPDTG  274 (386)
T ss_dssp             TT--EEEEEE-TTT-
T ss_pred             CCCceEEEeeCCCCC
Confidence             22345666666543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.30  E-value=0.96  Score=42.26  Aligned_cols=244  Identities=11%  Similarity=0.054  Sum_probs=117.2

Q ss_pred             EEEEEEeCC--EEEEE-EcCC----eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226          135 VVAMEVSHD--RVYAA-YGDG----KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD  207 (434)
Q Consensus       135 v~~l~~~~~--~l~~~-s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (434)
                      +..+.++|+  +++.+ +..|    .++++|+.+++.+...-                       .......+.|.++++
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-----------------------~~~~~~~~~W~~d~~  182 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-----------------------ENPKFSSVSWSDDGK  182 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-----------------------EEEESEEEEECTTSS
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-----------------------cccccceEEEeCCCC
Confidence            335677886  44433 3433    49999998774332210                       111123389999988


Q ss_pred             EEEEEecCC-----------cEEEEEcCCCee--EEEcccCccC--eEEEEEcCCC-e-EEEEeCC---CeEEEEecccc
Q 046226          208 TLYSASLDK-----------TIKVWRIRDSKC--IETIQAHSEP--INALVVADDG-V-LYSASDD---ATVRVWRRYFY  267 (434)
Q Consensus       208 ~l~s~~~dg-----------~i~vwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~-~-l~s~~~d---g~i~iwd~~~~  267 (434)
                      .|+....+.           .|+.|.+.+...  ...+......  ...+..++++ + ++.....   ..+.+.|+...
T Consensus       183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            776554333           378888876542  2334333332  5678889998 4 3333332   34667676521


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecCCCEEEEEc---CCCeEEEEEcCcccccccccCcccCccc--ceEEEEeeCCEE
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC---TDGYIHYWHKGWFSAQLQYGGALQGHTH--AVMCLASVANYV  342 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~l  342 (434)
                      . ..............+....+... .+.+++...   ..+.|...++....... ....+..+..  .+..+...+++|
T Consensus       263 ~-~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~-~~~~l~~~~~~~~l~~~~~~~~~L  339 (414)
T PF02897_consen  263 G-SPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAE-WWTVLIPEDEDVSLEDVSLFKDYL  339 (414)
T ss_dssp             T-TSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGG-EEEEEE--SSSEEEEEEEEETTEE
T ss_pred             C-CCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccccccc-ceeEEcCCCCceeEEEEEEECCEE
Confidence            0 00111221222222222333333 334444332   24677777776544211 1112223333  567777777755


Q ss_pred             EEe-cCCC--cEEEEeccCCCceeeEEEee-ccccceeEEEEeecccCCCCCCcccEEEEee---cCCeEEEEecCCCCc
Q 046226          343 ISG-SADS--TSRVWAREQDGRHTMLAVLV-GHRGPIRCAIAFLGRFGEETEDEYCTICTGS---LDGVLKMWRVTRPKS  415 (434)
Q Consensus       343 ~s~-~~dg--~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~---~Dg~v~iw~~~~~~~  415 (434)
                      +.. ..++  .|+++++..+   .....+. .-.+.|..+...++.        ..+.++.+   .-++|.-||+.+++.
T Consensus       340 vl~~~~~~~~~l~v~~~~~~---~~~~~~~~p~~g~v~~~~~~~~~--------~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  340 VLSYRENGSSRLRVYDLDDG---KESREIPLPEAGSVSGVSGDFDS--------DELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEETTEEEEEEEETT-T---EEEEEEESSSSSEEEEEES-TT---------SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEEEEECCccEEEEEECCCC---cEEeeecCCcceEEeccCCCCCC--------CEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            544 3444  6888888822   2222222 223345444433331        33333333   235788888887764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.30  E-value=0.69  Score=40.59  Aligned_cols=286  Identities=13%  Similarity=0.045  Sum_probs=121.9

Q ss_pred             cceeeeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCc---eeEee-ccC-CCccEEEEEEeCCEEEEEEcCCe
Q 046226           80 SSYRCISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEF---TECGR-LKA-KTSMVVAMEVSHDRVYAAYGDGK  153 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~---~~~~~-~~~-~~~~v~~l~~~~~~l~~~s~dg~  153 (434)
                      ..|+.+..  .-...+..|.| +.+.-+..+..+.|.- -...+   +.... ... ..-...+|.|..+..++++..+.
T Consensus         6 ~~W~~v~l--~t~~~l~dV~F~d~~~G~~VG~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~   82 (302)
T PF14870_consen    6 NSWQQVSL--PTDKPLLDVAFVDPNHGWAVGAYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGL   82 (302)
T ss_dssp             --EEEEE---S-SS-EEEEEESSSS-EEEEETTTEEEE-ESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTE
T ss_pred             CCcEEeec--CCCCceEEEEEecCCEEEEEecCCEEEE-ECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCce
Confidence            34555552  24558999999 5444433444565422 11112   22211 111 12346778888775555565664


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE-c
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET-I  232 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~  232 (434)
                      | +...+.++.-..+.+..                   .-......+....++..++ ++..|.|+.=. +.|+.-.. .
T Consensus        83 l-l~T~DgG~tW~~v~l~~-------------------~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~  140 (302)
T PF14870_consen   83 L-LHTTDGGKTWERVPLSS-------------------KLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVV  140 (302)
T ss_dssp             E-EEESSTTSS-EE----T-------------------T-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE
T ss_pred             E-EEecCCCCCcEEeecCC-------------------CCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcc
Confidence            3 33333333333322110                   0112223333333443333 34455544322 23332222 2


Q ss_pred             ccCccCeEEEEEcCCCeEEEEeCCCe-EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE
Q 046226          233 QAHSEPINALVVADDGVLYSASDDAT-VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH  311 (434)
Q Consensus       233 ~~~~~~v~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  311 (434)
                      ..-.+.+..+..++++.+++.+..|. ..-||--    .......  .......|..+.|.|++.+.+.+ ..|.|+.=+
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G----~~~w~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG----QTTWQPH--NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-----SS-EEE--E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCC----CccceEE--ccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            33456788888899994444445554 4567632    2222222  22345789999999998776655 888888876


Q ss_pred             cCcccccccc-cCcccCcccceEEEEee-CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCC
Q 046226          312 KGWFSAQLQY-GGALQGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEET  389 (434)
Q Consensus       312 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  389 (434)
                      .......... ..........+..+++. ++.+.+++..|.+ +...+.++.++.......-...++.+.|.+.      
T Consensus       214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~------  286 (302)
T PF14870_consen  214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP------  286 (302)
T ss_dssp             -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET------
T ss_pred             CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCC------
Confidence            2222222211 11121233347888886 3444445555544 3455555554444433344556778888764      


Q ss_pred             CCcccEEEEeecCCeEEEE
Q 046226          390 EDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       390 ~~~~~~l~s~~~Dg~v~iw  408 (434)
                         . .-...+.||.|.-|
T Consensus       287 ---~-~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  287 ---D-KGFVLGQDGVLLRY  301 (302)
T ss_dssp             ---T-EEEEE-STTEEEEE
T ss_pred             ---C-ceEEECCCcEEEEe
Confidence               2 44555678887655

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.21  E-value=0.67  Score=39.61  Aligned_cols=166  Identities=10%  Similarity=0.064  Sum_probs=103.5

Q ss_pred             ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC
Q 046226          128 LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS  205 (434)
Q Consensus       128 ~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  205 (434)
                      +.+-...+.++.|+|+  .|++......-.||=-..++.+..+.+.                     .-.....|.+..+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~---------------------g~~DpE~Ieyig~  139 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT---------------------GFSDPETIEYIGG  139 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc---------------------ccCChhHeEEecC
Confidence            3444556999999997  7777777776666655556666655432                     2333456677777


Q ss_pred             CCEEEEEecCCcEEEEEcCCCeeEEEc----------ccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKCIETI----------QAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~  274 (434)
                      +++.++--.++.+.++.+.....+..+          ...+.....++|.+.. .|+.+-+..-+.||.+......-...
T Consensus       140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~  219 (316)
T COG3204         140 NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH  219 (316)
T ss_pred             CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc
Confidence            777777777888888877654222211          1225678899999988 78888777778888665111110000


Q ss_pred             EEE----EecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCc
Q 046226          275 LIL----TLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       275 ~~~----~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      ...    ...-.-..+.++.|++ .+.+|+-+.+++.+.-.|...
T Consensus       220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence            000    0001123567788887 456777778888888887653

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.19  Score=45.36  Aligned_cols=138  Identities=11%  Similarity=0.016  Sum_probs=89.9

Q ss_pred             EEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226          240 NALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       240 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  319 (434)
                      +.+.|...+..+.+...|.+.-|-.....   ....+..-....++|.++.|++|.+.+++--.+..|.+++........
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpn---dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPN---DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCC---CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            45555544444444445556666555222   111222222345699999999999999999999999999986666666


Q ss_pred             cccCcccCcccceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          320 QYGGALQGHTHAVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      ......+.....|..+.|..+ -+|... +.-+.+|.+....  ..++..+.|.-.|.--.|.++
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pek--rslRlVks~~~nvnWy~yc~e  164 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPE  164 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchhh--hhhhhhhhcccCccEEEEccc
Confidence            666666666777999999754 455554 3446777665432  345556667777777777776

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=0.09  Score=52.74  Aligned_cols=139  Identities=9%  Similarity=-0.029  Sum_probs=85.8

Q ss_pred             CCeEEEEEecCCCEEEEE--ecCCcEEEEEcCCCeeE-----EEcc------cCccCeEEEEEcCCC--eEEEEeCCCeE
Q 046226          195 GPITSIAINVSDDTLYSA--SLDKTIKVWRIRDSKCI-----ETIQ------AHSEPINALVVADDG--VLYSASDDATV  259 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~-----~~~~------~~~~~v~~~~~~~~~--~l~s~~~dg~i  259 (434)
                      -++..+...+|+...++.  +.+-.|..||+++...-     .-+.      .......++.|+|.-  ..+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            456666667776655443  33347899999753211     1111      123355678888876  67778889999


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA  339 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  339 (434)
                      ++..+.     ........ .......++++|+|.|+.++.|...|++.-|........ ............|.|+.|-+
T Consensus       181 ~V~~~~-----~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~-~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  181 RVKSTK-----QLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS-EIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhh-----hhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceee-cccCCCcCCCcceeEEEEec
Confidence            998765     11111111 123356899999999999999999999999875322111 11111111246889999976


Q ss_pred             C
Q 046226          340 N  340 (434)
Q Consensus       340 ~  340 (434)
                      .
T Consensus       254 t  254 (1405)
T KOG3630|consen  254 T  254 (1405)
T ss_pred             c
Confidence            5

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.15  E-value=0.018  Score=55.96  Aligned_cols=194  Identities=13%  Similarity=0.051  Sum_probs=109.8

Q ss_pred             CCcEEEEEcCCCee-EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEe-cccccCeEEEE
Q 046226          215 DKTIKVWRIRDSKC-IETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTL-TAKYSPVKTLT  290 (434)
Q Consensus       215 dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~  290 (434)
                      .+.+++-+..+... -..+++..+.+-.+.|....  .+.  -.-|.+.|||+....++-...+.... ......+.-+.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            34566665543221 12234556677777775433  222  33477899998865554444433332 23334455666


Q ss_pred             Eec---CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce-------------EEEEeeCCEEEEecCCCcEEEE
Q 046226          291 LTL---DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV-------------MCLASVANYVISGSADSTSRVW  354 (434)
Q Consensus       291 ~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~l~s~~~dg~i~iw  354 (434)
                      |.|   +.-++..+-.++.|++...+....     ..+.+|...+             ..++.+|..|+....||.++.|
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            665   556777777888888877653322     1233455444             3456678899999999998888


Q ss_pred             eccCC--CceeeEEEeecccc-ceeEEEEeecccCCCCCCcccEEEEee-cCCeEEEEecCCCCc
Q 046226          355 AREQD--GRHTMLAVLVGHRG-PIRCAIAFLGRFGEETEDEYCTICTGS-LDGVLKMWRVTRPKS  415 (434)
Q Consensus       355 d~~~~--~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~iw~~~~~~~  415 (434)
                      .+.-.  ....|+..++.|.+ +-.|..+.....-....+.-.++++++ ....+++|.-..-+.
T Consensus       263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C  327 (1283)
T KOG1916|consen  263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC  327 (1283)
T ss_pred             eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence            76432  23357778888884 444443433221111112233455555 455699998765443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.08  E-value=0.19  Score=41.21  Aligned_cols=100  Identities=8%  Similarity=0.062  Sum_probs=65.2

Q ss_pred             EEEEEeCC---EEEEEEcCCeEEEeec--CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226          136 VAMEVSHD---RVYAAYGDGKIRVWRS--TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY  210 (434)
Q Consensus       136 ~~l~~~~~---~l~~~s~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  210 (434)
                      +.++|+.+   ..++-+.+-+|.-||.  .++.....-.+..+....            -.++. .--.+++..+|++.+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~------------~~e~~-~PDGm~ID~eG~L~V  227 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ------------PFESL-EPDGMTIDTEGNLYV  227 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC------------CcCCC-CCCcceEccCCcEEE
Confidence            56777765   4566677888888884  344332222221111110            00111 112334455788888


Q ss_pred             EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC
Q 046226          211 SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG  248 (434)
Q Consensus       211 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (434)
                      ++-..++|...|..+|+.+.+++-....|+|++|-..+
T Consensus       228 a~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn  265 (310)
T KOG4499|consen  228 ATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN  265 (310)
T ss_pred             EEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence            88888999999999999999999999999999997654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.07  E-value=1.2  Score=41.08  Aligned_cols=40  Identities=13%  Similarity=0.081  Sum_probs=33.4

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH  142 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  142 (434)
                      ...+++|..+|.|++|.. +|.++..-.-|..+|..+....
T Consensus        79 w~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   79 WTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             cEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            468999999999999984 7777777777899999998854

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=1.5  Score=42.49  Aligned_cols=181  Identities=13%  Similarity=0.102  Sum_probs=94.4

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM  190 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
                      -.|+|+++ +|..+.++.-..+.+..+.|+.+ .|++...+|++.+|++-.... ....+..                  
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~i-e~~svg~------------------  123 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFI-ESNSVGF------------------  123 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhh-ccccccc------------------
Confidence            45888886 56666665544558999999998 899999999999999753221 1111000                  


Q ss_pred             cCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc---CccCeEEEEEcCCC----eEEEEe-CCCeEEEE
Q 046226          191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA---HSEPINALVVADDG----VLYSAS-DDATVRVW  262 (434)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~----~l~s~~-~dg~i~iw  262 (434)
                      ......|..+.|..+|-.+++.  +|.+.+-+-.....+.+++.   ..-.-.|-...+++    .++-.. ..+ ..++
T Consensus       124 e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~  200 (829)
T KOG2280|consen  124 ESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHIC  200 (829)
T ss_pred             ccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccc
Confidence            0123345555555455333333  45554443222222333322   11122333333332    111111 111 0111


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ  320 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  320 (434)
                      -.     .........+......+..+.++|+.++|+--..+|.|.+-+.+......+
T Consensus       201 q~-----~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce  253 (829)
T KOG2280|consen  201 QV-----EESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE  253 (829)
T ss_pred             ce-----ecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence            11     111111122222245678899999999999999999999988764443333

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.92  E-value=0.0027  Score=61.30  Aligned_cols=235  Identities=16%  Similarity=0.192  Sum_probs=124.1

Q ss_pred             CCeEEEecCCCce-eEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCC--CCCceeeEeeeccCCCCceeEEE
Q 046226          111 SNVIRIWKQPEFT-ECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTW--DNGVKHVKLATIPKTGGAVRNLI  184 (434)
Q Consensus       111 dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~  184 (434)
                      .+-+++-|..+.. ....+++..+.|-.++|-..   .+.  -.-|.+.|||++.  ++....+.+.....         
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p---------  178 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP---------  178 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc---------
Confidence            4667777765533 22345677888888888542   222  2347789998763  22222222221111         


Q ss_pred             eccccccCcCCCeEEEEE---ecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEE
Q 046226          185 VGKDKMMKHMGPITSIAI---NVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRV  261 (434)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~---~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~i  261 (434)
                              ....+.-|.|   -++..++..+..++.|++....+... ..+.+|...+..+++...|++...+       
T Consensus       179 --------~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------  242 (1283)
T KOG1916|consen  179 --------YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------  242 (1283)
T ss_pred             --------CCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------
Confidence                    1222233333   34566777777788888877655432 4556688888877776655221111       


Q ss_pred             EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc-ccccccCcccCcc-cceEEEEee-
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS-AQLQYGGALQGHT-HAVMCLASV-  338 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~-~~v~~~~~~-  338 (434)
                                                   ++|||..++.++.||.++.|.+--.. ....+....+.|. .+-.|.-++ 
T Consensus       243 -----------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~  293 (1283)
T KOG1916|consen  243 -----------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHK  293 (1283)
T ss_pred             -----------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeecc
Confidence                                         56677777777777777776543211 1122223333444 333343343 


Q ss_pred             --------CC--EEEEecC-CCcEEEEeccCCCceeeE--------EEeeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226          339 --------AN--YVISGSA-DSTSRVWAREQDGRHTML--------AVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       339 --------~~--~l~s~~~-dg~i~iwd~~~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                              +.  +++++++ +..+++|....-   +|+        .....|.+.|+.+....--        -..+++-
T Consensus       294 ~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w---~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~--------~~~~v~r  362 (1283)
T KOG1916|consen  294 QEILVVSIGKWVLRITTTDVNREEKFWAEAPW---QCLLDKLIDGVQIVGPHDGEVTDLSMCQWM--------TTRLVSR  362 (1283)
T ss_pred             ccccCCccceeEEEEecccCCcceeEeeccch---hhhhhhcccceEeecCCCccccchhhhHHH--------HHHHHHh
Confidence                    11  3444443 457888876543   333        2223444444432111000        1135667


Q ss_pred             ecCCeEEEEecCC
Q 046226          400 SLDGVLKMWRVTR  412 (434)
Q Consensus       400 ~~Dg~v~iw~~~~  412 (434)
                      +.|+.|++|.-..
T Consensus       363 ~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  363 SVDGTIKIWQNRK  375 (1283)
T ss_pred             hhHHHHHHhhcch
Confidence            7899999997543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.90  E-value=1.4  Score=40.61  Aligned_cols=283  Identities=12%  Similarity=0.088  Sum_probs=139.9

Q ss_pred             CCEEEEEeCCCeEEEecCCCce-----eEeeccCCCccEEEEEEeC------CEEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFT-----ECGRLKAKTSMVVAMEVSH------DRVYAAYGDGKIRVWRSTWDNGVKHVKL  170 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~~~------~~l~~~s~dg~i~vwd~~~~~~~~~~~~  170 (434)
                      .+.+++|+..|.++||+.....     .+.+.+ -..+|..+..-.      +..++.-.-..+.||.+......     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~-----  110 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT-----  110 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC-----
Confidence            4689999999999999874422     122211 245677766532      23444456677777776322111     


Q ss_pred             eeccCCCCceeEEEeccccccCcC--CCeEEEEEec----C-CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE
Q 046226          171 ATIPKTGGAVRNLIVGKDKMMKHM--GPITSIAINV----S-DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV  243 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~----~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  243 (434)
                         ...+... .+..    ...|.  .....+++-|    . ..++.+=+.||.+.+++-+.......+.. .--.-.+.
T Consensus       111 ---~~~g~~~-~L~~----~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~  181 (418)
T PF14727_consen  111 ---VEHGNQY-QLEL----IYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLC  181 (418)
T ss_pred             ---cccCcEE-EEEE----EEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeE
Confidence               0000000 0000    00122  2233333333    1 35677889999999999766544444443 22223456


Q ss_pred             EcCCC-eEEEEeCCCeEEEEecccccCcce---------------eEE--EEEecccccCeEEEEE---ecCCCEEEEEc
Q 046226          244 VADDG-VLYSASDDATVRVWRRYFYSENQL---------------HTL--ILTLTAKYSPVKTLTL---TLDDGLLYGGC  302 (434)
Q Consensus       244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~--~~~~~~~~~~v~~~~~---~~~~~~l~~~~  302 (434)
                      +.+.. .+++++.+..+..|..........               ...  .-++. -...+..+..   +.....+++-+
T Consensus       182 Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg  260 (418)
T PF14727_consen  182 YCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG  260 (418)
T ss_pred             EeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe
Confidence            66655 888888888888886531111100               000  00111 1112333332   22222333322


Q ss_pred             CCCeEEEEEcCcccccccccCcccCcccceEEEEe----eCC---EEEEecCCCcEEEEeccCCCceeeEEEeeccccce
Q 046226          303 TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS----VAN---YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPI  375 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  375 (434)
                       ...+.+.+..   ....+...+............    .++   .++.++.++.+.||.-.     +.+...+....+|
T Consensus       261 -er~Lf~l~~~---G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~-----~L~WsA~l~~~PV  331 (418)
T PF14727_consen  261 -ERSLFCLKDN---GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT-----TLVWSAQLPHVPV  331 (418)
T ss_pred             -cceEEEEcCC---CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC-----eEEEecCCCCCCE
Confidence             2344444432   222332333222211111111    222   58889999999999644     3333333333333


Q ss_pred             eEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          376 RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                       ++....-      ..-..+|++-+.+|.+.+-=+-+....
T Consensus       332 -al~v~~~------~~~~G~IV~Ls~~G~L~v~YLGTdPs~  365 (418)
T PF14727_consen  332 -ALSVANF------NGLKGLIVSLSDEGQLSVSYLGTDPSL  365 (418)
T ss_pred             -EEEeccc------CCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence             2222210      011568999999999999888766543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.89  E-value=0.32  Score=47.39  Aligned_cols=112  Identities=10%  Similarity=0.010  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCCeEEEEEcCccccc----------------ccccCcccCcccceEEEEee----CCEEEEecCCCcEEE
Q 046226          294 DDGLLYGGCTDGYIHYWHKGWFSAQ----------------LQYGGALQGHTHAVMCLASV----ANYVISGSADSTSRV  353 (434)
Q Consensus       294 ~~~~l~~~~~dg~i~i~d~~~~~~~----------------~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~i  353 (434)
                      +...|+.+..||.|.+|.+..-...                ......+ .-....+++++.    .+++|+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            4567888889999999975321100                0000011 112356788876    457888887788888


Q ss_pred             EeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc-EEEEeecCCeEEEEec
Q 046226          354 WAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC-TICTGSLDGVLKMWRV  410 (434)
Q Consensus       354 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~iw~~  410 (434)
                      |-............-..|...|.+|.|.++....    .|. .|++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~----~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDP----NGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCC----ccceEEEEEeccCcEEEEEE
Confidence            7655421101111111366779999999884222    143 7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.78  E-value=2.5  Score=42.48  Aligned_cols=284  Identities=15%  Similarity=0.107  Sum_probs=137.2

Q ss_pred             EeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeE-------eeccCCCccEEEEEEeCC------EEEEEEc---
Q 046226           88 VLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTEC-------GRLKAKTSMVVAMEVSHD------RVYAAYG---  150 (434)
Q Consensus        88 ~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~-------~~~~~~~~~v~~l~~~~~------~l~~~s~---  150 (434)
                      ..+...-..|+.+ +...|++|+.-|.=.+-.+.+....       .++. .-++|.++..-..      .+++++.   
T Consensus       302 ~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~k  380 (1096)
T KOG1897|consen  302 YLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFK  380 (1096)
T ss_pred             ecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCC
Confidence            3444555566777 8889999998876666655442222       1221 2357888777542      6777766   


Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE--EecC-CCEEEEEecCCcEEEEEcCCCe
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA--INVS-DDTLYSASLDKTIKVWRIRDSK  227 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~~~l~s~~~dg~i~vwd~~~~~  227 (434)
                      ||++++..-.  -.+.......++                  .-..++.+.  +.++ .++|+.+- -+.-++..+...-
T Consensus       381 dgSLRiiRng--i~I~e~A~i~l~------------------Gikg~w~lk~~v~~~~d~ylvlsf-~~eTrvl~i~~e~  439 (1096)
T KOG1897|consen  381 DGSLRIIRNG--IGIDELASIDLP------------------GIKGMWSLKSMVDENYDNYLVLSF-ISETRVLNISEEV  439 (1096)
T ss_pred             CCcEEEEecc--cccceeeEeecC------------------CccceeEeeccccccCCcEEEEEe-ccceEEEEEccce
Confidence            8999998643  222222111111                  133455555  3322 22444443 3344455443221


Q ss_pred             eEEEcccCccCeEEEEEcCC-C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226          228 CIETIQAHSEPINALVVADD-G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG  305 (434)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  305 (434)
                      ......+-......++.+.- + .|+-... ..||+++-.        .....+.. .+.++....+.+...++.++.++
T Consensus       440 ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~--------~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~  509 (1096)
T KOG1897|consen  440 EETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA--------GLRSEWRP-PGKITIGVVSANASQVVVAGGGL  509 (1096)
T ss_pred             EEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch--------hhhhcccC-CCceEEEEEeecceEEEEecCcc
Confidence            11111111222223333211 1 2222222 245665422        01111111 12333344444555677777777


Q ss_pred             eEEEEEcCcccccccccCcccCcccceEEEEee-----CC---EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE
Q 046226          306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-----AN---YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC  377 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  377 (434)
                      .+...++.........   -......|.|++++     ++   +++.|.++..+.+--........+...+.+ ....++
T Consensus       510 ~l~y~~i~~~~l~e~~---~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~-~~iPRS  585 (1096)
T KOG1897|consen  510 ALFYLEIEDGGLREVS---HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG-EIIPRS  585 (1096)
T ss_pred             EEEEEEeeccceeeee---eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC-Cccchh
Confidence            7777776544311111   11234578888775     22   888898877666554433211111111211 111223


Q ss_pred             EEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      +.+..-      ..+..+|.++..||.+..+.+...
T Consensus       586 Il~~~~------e~d~~yLlvalgdG~l~~fv~d~~  615 (1096)
T KOG1897|consen  586 ILLTTF------EGDIHYLLVALGDGALLYFVLDIN  615 (1096)
T ss_pred             eeeEEe------eccceEEEEEcCCceEEEEEEEcc
Confidence            322211      112679999999999988877644

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.66  E-value=0.56  Score=44.03  Aligned_cols=116  Identities=10%  Similarity=0.080  Sum_probs=68.5

Q ss_pred             CcCCCeEEEEEecC----CCEEEEEecCCcEEEEEcC-----CCeeEEEcccC-cc----CeEEEEEcCCC-eEEEEeCC
Q 046226          192 KHMGPITSIAINVS----DDTLYSASLDKTIKVWRIR-----DSKCIETIQAH-SE----PINALVVADDG-VLYSASDD  256 (434)
Q Consensus       192 ~~~~~v~~~~~~~~----~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~-~~----~v~~~~~~~~~-~l~s~~~d  256 (434)
                      +.-..|..+.|.|-    ...|++......|.||.+.     +.+.+..-..+ ..    --..+.|+|.. .|+.-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            45566999999984    3356666678899999985     22222211111 11    12356789888 44444443


Q ss_pred             CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEc
Q 046226          257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHK  312 (434)
Q Consensus       257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~  312 (434)
                      ..-.+++++.    ........+ ...+.|.|.+|.+||+.|+++-. .=.-+|||-
T Consensus       134 dvSV~~sV~~----d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  134 DVSVLPSVHC----DSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ceeEeeeeee----CCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            3334555541    111122222 34578999999999998877643 335678884

>PHA02790 Kelch-like protein; Provisional

Probab=95.57  E-value=1.3  Score=42.24  Aligned_cols=142  Identities=8%  Similarity=0.032  Sum_probs=69.9

Q ss_pred             CCCEEEEEecC--CcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCCC---eEEEEecccccCcceeEEE
Q 046226          205 SDDTLYSASLD--KTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDDA---TVRVWRRYFYSENQLHTLI  276 (434)
Q Consensus       205 ~~~~l~s~~~d--g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg---~i~iwd~~~~~~~~~~~~~  276 (434)
                      ++...+.|+.+  ..+..||..+.+-  +..+...... .+++.. ++ ..+.||.++   .+..||..    ...+...
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~-~g~IYviGG~~~~~~~ve~ydp~----~~~W~~~  391 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASI-NNVIYVIGGHSETDTTTEYLLPN----HDQWQFG  391 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEE-CCEEEEecCcCCCCccEEEEeCC----CCEEEeC
Confidence            56666777754  3577888765432  2222211111 123333 45 666666543   46677765    2223322


Q ss_pred             EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCC-----CcE
Q 046226          277 LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSAD-----STS  351 (434)
Q Consensus       277 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i  351 (434)
                      ..+....... ++ ..-++...+.|   |.+.+||..+  ..+.....+............+++..+.||.+     ..+
T Consensus       392 ~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp~~--~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~v  464 (480)
T PHA02790        392 PSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYCESS--NTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTI  464 (480)
T ss_pred             CCCCCccccc-eE-EEECCEEEEEC---CceEEecCCC--CcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceE
Confidence            2222111111 12 22345555655   3577888753  33333333332223334455677788888764     346


Q ss_pred             EEEeccCC
Q 046226          352 RVWAREQD  359 (434)
Q Consensus       352 ~iwd~~~~  359 (434)
                      ..||..++
T Consensus       465 e~Yd~~~~  472 (480)
T PHA02790        465 EVYNNRTY  472 (480)
T ss_pred             EEEECCCC
Confidence            67776654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.56  E-value=1.1  Score=43.35  Aligned_cols=113  Identities=14%  Similarity=0.191  Sum_probs=68.7

Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc-cCccCeEEEEEc--CCC-eEEEEeCCCeEEEEeccc---ccCc
Q 046226          198 TSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ-AHSEPINALVVA--DDG-VLYSASDDATVRVWRRYF---YSEN  270 (434)
Q Consensus       198 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~-~l~s~~~dg~i~iwd~~~---~~~~  270 (434)
                      .-+.-+.-++.-++-+....+.|||.+.+.....-. ...+.|.++.|.  |++ .+++.|..+.|.++--..   ....
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            333333334444444445689999998876443322 357789999986  566 788888888898884310   0111


Q ss_pred             ceeEEEEE--ecccc-cCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226          271 QLHTLILT--LTAKY-SPVKTLTLTLDDGLLYGGCTDGYIHYWHK  312 (434)
Q Consensus       271 ~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  312 (434)
                      .....+..  +..+. .+|....|.++|.+++.+  +..+.|+|-
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            11112211  22222 578899999998776654  457888873

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.53  E-value=0.51  Score=42.93  Aligned_cols=116  Identities=17%  Similarity=0.160  Sum_probs=56.8

Q ss_pred             CCeEEEecCCCceeEeeccCCC--ccEEEEEEeCC-----EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEE
Q 046226          111 SNVIRIWKQPEFTECGRLKAKT--SMVVAMEVSHD-----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNL  183 (434)
Q Consensus       111 dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~~~~-----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (434)
                      ...+.+||+.+.+.++++.-..  .....|.|..+     .++.+.-..+|..|--..+..-..-++..++.....-..+
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            4589999999999999887543  24567777543     4555555666666654333333333333332211000000


Q ss_pred             EeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCC
Q 046226          184 IVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDS  226 (434)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~  226 (434)
                      ..-...+..-..-|++|.+|.|.++|+..+ .+|.|+.||+...
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence            000001111245689999999999988665 5899999999753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.48  E-value=1.4  Score=37.53  Aligned_cols=185  Identities=10%  Similarity=-0.037  Sum_probs=103.4

Q ss_pred             CeEEEEEecCCCEEEEEecCC--cEEEEEcCCCeeEEEcccC-ccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcce
Q 046226          196 PITSIAINVSDDTLYSASLDK--TIKVWRIRDSKCIETIQAH-SEPINALVVADDGVLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      -...+.|..++.++-+.+.-|  .|+.+|+.+++.+....-. .-.-..++...+....-.=.++...+||...      
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t------  119 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT------  119 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTT------
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEcccc------
Confidence            345677767777777777666  7999999999877655432 2233456666555555566789999999862      


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc-ccceEEEEee-CCEEEEecCCCc
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASV-ANYVISGSADST  350 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~l~s~~~dg~  350 (434)
                      .+.+..+.- ...-..++  .+++.|+.......|+++|..+........-...+. ...+.-+.+- |...|=.-....
T Consensus       120 l~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~  196 (264)
T PF05096_consen  120 LKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDR  196 (264)
T ss_dssp             TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSE
T ss_pred             ceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCe
Confidence            122222221 13444555  467788888778899999976554433322111111 1123334443 334444445566


Q ss_pred             EEEEeccCCCceeeEEEee---------------ccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226          351 SRVWAREQDGRHTMLAVLV---------------GHRGPIRCAIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~---------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                      |...|..++   ..+..+.               ...+-.+.+|+.|..        +.+++||-
T Consensus       197 I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~--------~~l~vTGK  250 (264)
T PF05096_consen  197 IVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET--------DRLFVTGK  250 (264)
T ss_dssp             EEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT--------TEEEEEET
T ss_pred             EEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC--------CEEEEEeC
Confidence            777777776   3333221               013457889999884        66777774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.38  E-value=2.2  Score=39.27  Aligned_cols=200  Identities=16%  Similarity=0.137  Sum_probs=120.4

Q ss_pred             CeEEEEEecCCCEEEE-EecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC---CCeEEEEecccccCc
Q 046226          196 PITSIAINVSDDTLYS-ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD---DATVRVWRRYFYSEN  270 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~~~~  270 (434)
                      .-..+++++.+..++. ...++.|.+.|..+.+.......-. ....+++.+++ .+..+..   ++.+.+.|..     
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-----  148 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-----  148 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCC-----
Confidence            3456778888875554 4456899999988777766655333 56789999998 5554444   6778777754     


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCcccccc-cccCccc-CcccceEEEEeeCCEEEEecC
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQL-QYGGALQ-GHTHAVMCLASVANYVISGSA  347 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~~~l~s~~~  347 (434)
                       .............+ ..++++|+|+.++... .++.|.++|........ ....... +.......+..+++++.....
T Consensus       149 -t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         149 -TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             -CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence             22222222222234 8899999999776665 78999999965443221 1000111 111233455566774444333


Q ss_pred             ---CCcEEEEeccCCCceeeEEE-eeccccceeEEEEeecccCCCCCCcccEEEEee-cCCeEEEEecCCCCc
Q 046226          348 ---DSTSRVWAREQDGRHTMLAV-LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS-LDGVLKMWRVTRPKS  415 (434)
Q Consensus       348 ---dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~iw~~~~~~~  415 (434)
                         ++.+...|..++   ..... ...-......+...|+         |..+.+.. ..+.|.+-|..+...
T Consensus       227 ~~~~~~v~~id~~~~---~v~~~~~~~~~~~~~~v~~~p~---------g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         227 GSGSNNVLKIDTATG---NVTATDLPVGSGAPRGVAVDPA---------GKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             cCCCceEEEEeCCCc---eEEEeccccccCCCCceeECCC---------CCEEEEEecCCCeEEEEeCCCCce
Confidence               268888888876   23222 1111113456788888         77776663 447888888776544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.35  E-value=1.2  Score=43.25  Aligned_cols=120  Identities=9%  Similarity=0.071  Sum_probs=75.3

Q ss_pred             EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee----CCEEEEecCCCcEEE
Q 046226          278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV----ANYVISGSADSTSRV  353 (434)
Q Consensus       278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~i  353 (434)
                      .+...-..+.-+.-+.-++..++-.....+.|||.+...  .++...+ .....|.+++|.    ++.+++.|..+.|.+
T Consensus        24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l  100 (631)
T PF12234_consen   24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV--LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLL  100 (631)
T ss_pred             EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE--EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence            333333455555555556666666667789999987544  4544455 445688898884    678888888899988


Q ss_pred             Eecc------CCCceeeEEE--eeccc-cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          354 WARE------QDGRHTMLAV--LVGHR-GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       354 wd~~------~~~~~~~~~~--~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      |.-.      .+..+..+..  +..|+ .+|.+..|.++         |.+++.+  ++.+.|++-.
T Consensus       101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~---------G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKD---------GTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecC---------CeEEEEe--CCEEEEECCC
Confidence            8531      2222233333  23444 57889999988         5555544  3567787643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.22  E-value=1  Score=41.52  Aligned_cols=145  Identities=10%  Similarity=0.023  Sum_probs=81.2

Q ss_pred             cCCCEEE-EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--------eEEEEeCCCeEEEEecccccCcceeE
Q 046226          204 VSDDTLY-SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--------VLYSASDDATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       204 ~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~l~s~~~dg~i~iwd~~~~~~~~~~~  274 (434)
                      .+..+|+ .|.....++-.|++.|+.+..+..|..-  -+.+.|+.        .-+.|-.+..|.-.|.+...+.....
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            3445544 4566678889999999999999887765  46666643        23445555666666766222110100


Q ss_pred             EEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEE
Q 046226          275 LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSR  352 (434)
Q Consensus       275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~  352 (434)
                      ....+. ......+.. .....++++++..|-|++||--    ...-...+++-...|..+..  +|.++++.+ ...+.
T Consensus       555 esKdY~-tKn~Fss~~-tTesGyIa~as~kGDirLyDRi----g~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yll  627 (776)
T COG5167         555 ESKDYK-TKNKFSSGM-TTESGYIAAASRKGDIRLYDRI----GKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLL  627 (776)
T ss_pred             eehhcc-ccccccccc-cccCceEEEecCCCceeeehhh----cchhhhcCcccccceeeeEeecCCcEEEEee-cceEE
Confidence            000111 111222222 2245689999999999999932    11111234444556655554  577665554 34666


Q ss_pred             EEecc
Q 046226          353 VWARE  357 (434)
Q Consensus       353 iwd~~  357 (434)
                      +-|+.
T Consensus       628 L~d~~  632 (776)
T COG5167         628 LTDVP  632 (776)
T ss_pred             EEecc
Confidence            76654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.10  E-value=4.3  Score=40.96  Aligned_cols=60  Identities=13%  Similarity=0.091  Sum_probs=42.1

Q ss_pred             CCEEEEEecCCcEEEEEcCCCeeEEEcccCccC--------eEEEEEcC-----------------CCeEEEEeCCCeEE
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP--------INALVVAD-----------------DGVLYSASDDATVR  260 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~-----------------~~~l~s~~~dg~i~  260 (434)
                      +..++.++.++.|.-.|..+|+.+.++......        ...+.+..                 +++++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            667888888899999999999998887643211        11222221                 22788888899988


Q ss_pred             EEecc
Q 046226          261 VWRRY  265 (434)
Q Consensus       261 iwd~~  265 (434)
                      -.|.+
T Consensus       274 ALDA~  278 (764)
T TIGR03074       274 ALDAD  278 (764)
T ss_pred             EEECC
Confidence            88876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.99  E-value=2.3  Score=41.80  Aligned_cols=112  Identities=12%  Similarity=0.134  Sum_probs=70.0

Q ss_pred             eEEEEEe--cCCCEEEEEecCCcEEEEEcCC-------C----e---------eEEEcccCccCeEEEEEc--CCC-eEE
Q 046226          197 ITSIAIN--VSDDTLYSASLDKTIKVWRIRD-------S----K---------CIETIQAHSEPINALVVA--DDG-VLY  251 (434)
Q Consensus       197 v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~-~l~  251 (434)
                      |+.|...  .+...|+.+.+||.|.+|.+++       .    +         +...+. -...+.+++++  ... +||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            4444332  3566788999999999997632       0    0         111111 23467888888  555 777


Q ss_pred             EEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC---C---EEEEEcCCCeEEEEEc
Q 046226          252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD---G---LLYGGCTDGYIHYWHK  312 (434)
Q Consensus       252 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~  312 (434)
                      +++....|.||-..........   ..-..+...|.+|+|.++.   .   .|++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~---~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYH---VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEecccccccc---ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7777788888865421111111   1111255678889987743   2   7888899999999987

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.95  E-value=0.17  Score=50.95  Aligned_cols=125  Identities=11%  Similarity=0.011  Sum_probs=80.9

Q ss_pred             cCCEEEEE--eCCCeEEEecCCCceeEe-----ecc------CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCC
Q 046226          101 GNGFIYTG--SDSNVIRIWKQPEFTECG-----RLK------AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNG  164 (434)
Q Consensus       101 ~~~~l~tg--~~dg~i~iwd~~~~~~~~-----~~~------~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~  164 (434)
                      |+...++-  +.+-.|..||+.+...-.     -++      .......++.|+|.   ..+++..|+.|++..+.....
T Consensus       111 D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~  190 (1405)
T KOG3630|consen  111 DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ  190 (1405)
T ss_pred             CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh
Confidence            54443333  334478889986633221     111      22345577888886   667778899999987653211


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc----CccCeE
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA----HSEPIN  240 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~  240 (434)
                      ...-                      ..-...+++++|+|.|+.++.|-..|++.-|... ++....+.+    ....|.
T Consensus       191 ~v~s----------------------~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl  247 (1405)
T KOG3630|consen  191 NVTS----------------------FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVL  247 (1405)
T ss_pred             hhcc----------------------cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCccee
Confidence            1110                      1355678999999999999999999999998763 443344332    246899


Q ss_pred             EEEEcCCC
Q 046226          241 ALVVADDG  248 (434)
Q Consensus       241 ~~~~~~~~  248 (434)
                      +|+|....
T Consensus       248 ~v~Wl~t~  255 (1405)
T KOG3630|consen  248 SVTWLSTQ  255 (1405)
T ss_pred             EEEEecce
Confidence            99998766

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.93  E-value=2.2  Score=36.69  Aligned_cols=167  Identities=13%  Similarity=0.050  Sum_probs=106.3

Q ss_pred             CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC-ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccC
Q 046226          192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH-SEPINALVVADDG-VLYSASDDATVRVWRRYFYSE  269 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~  269 (434)
                      +-...+.++.|+|+.+.|++......-.|+=...|+.+.++.-. -.....|.+..++ +.++--.++.+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            45556999999999999999988887777777788888877532 2234567787777 445545677787776652211


Q ss_pred             cc---eeEEEE-EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc-------cceEEEEee
Q 046226          270 NQ---LHTLIL-TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT-------HAVMCLASV  338 (434)
Q Consensus       270 ~~---~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~v~~~~~~  338 (434)
                      ..   ..+... .....+.....++|+|.++.|+.+-+..=+.||............ ....+.       ..|.++.++
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~-~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH-ASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc-cccCcccccceEeeccccceec
Confidence            10   101111 122225678899999999999999888888888765322222111 111111       234555565


Q ss_pred             ---CCEEEEecCCCcEEEEeccCC
Q 046226          339 ---ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       339 ---~~~l~s~~~dg~i~iwd~~~~  359 (434)
                         +..|+-+.+++.+.-.|....
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCCC
Confidence               457777778888877877653

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.83  E-value=0.00064  Score=60.93  Aligned_cols=250  Identities=10%  Similarity=0.070  Sum_probs=139.4

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      .+.-++.++.+..|..||- .++....+. .++....++|..+   .++.+-..+.+.+||+.+......-.      .+
T Consensus        45 e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~------gg  116 (615)
T KOG2247|consen   45 EGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES------GG  116 (615)
T ss_pred             CCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc------cC
Confidence            4444777888889999984 344443333 3455666777664   55666778999999987543221110      00


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCC
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDA  257 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg  257 (434)
                                    .|....  +.|++....++.+...|.+.+++..+.+.+.....|...+.++++.+.++.+.++.|.
T Consensus       117 --------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~  180 (615)
T KOG2247|consen  117 --------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDN  180 (615)
T ss_pred             --------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHH
Confidence                          122222  6788888889999899999999998877776666699999999999999888888877


Q ss_pred             eEEEEecccccCcceeEEEEEecccccCe--EEE---EEecCCCEEEEEcCCCeEEEE--EcCcccccccccCcccCccc
Q 046226          258 TVRVWRRYFYSENQLHTLILTLTAKYSPV--KTL---TLTLDDGLLYGGCTDGYIHYW--HKGWFSAQLQYGGALQGHTH  330 (434)
Q Consensus       258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v--~~~---~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~  330 (434)
                      .+.+-...     ..........+.....  ..+   .|...|..+...-. |++.+.  .+.....+...  .++...+
T Consensus       181 ~L~v~~qe-----geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pval--~fq~~~g  252 (615)
T KOG2247|consen  181 TLSVTTQE-----GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPVAL--QFQEKYG  252 (615)
T ss_pred             HHHHhhhc-----cceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCccce--EeeecCC
Confidence            66543221     0000011111111111  111   12222333322211 111111  11111111111  2333445


Q ss_pred             ceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          331 AVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       331 ~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      .+.|..|-++ ++..+..-|.|..-...+.+-...+.....|.+.+..++.+.
T Consensus       253 ni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsq  305 (615)
T KOG2247|consen  253 NIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQ  305 (615)
T ss_pred             ceeEEEEeccccccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHH
Confidence            6777777666 777787777777777666532222222225666666665553

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.74  E-value=2.4  Score=36.24  Aligned_cols=98  Identities=15%  Similarity=0.160  Sum_probs=62.2

Q ss_pred             EEEEEEeCC---EEEEEEcCCe-EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226          135 VVAMEVSHD---RVYAAYGDGK-IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY  210 (434)
Q Consensus       135 v~~l~~~~~---~l~~~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  210 (434)
                      ...|+++|.   -++.+-.-|+ ..++|....+....+...              ....+.+|.      .|+|||.+|+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~--------------~~RHfyGHG------vfs~dG~~LY  129 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ--------------EGRHFYGHG------VFSPDGRLLY  129 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc--------------cCceeeccc------ccCCCCcEEE
Confidence            345667664   3444444443 567777666554443210              011122443      6899999999


Q ss_pred             EEecC-----CcEEEEEcCCC-eeEEEcccCccCeEEEEEcCCC-eEEE
Q 046226          211 SASLD-----KTIKVWRIRDS-KCIETIQAHSEPINALVVADDG-VLYS  252 (434)
Q Consensus       211 s~~~d-----g~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~s  252 (434)
                      ..-.|     |.|-|||.+.+ +.+..+..|.-.-..+.+.+|| .++.
T Consensus       130 ATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvv  178 (366)
T COG3490         130 ATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVV  178 (366)
T ss_pred             eecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEE
Confidence            77544     78999999754 5667788888788899999999 4443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.67  E-value=2.1  Score=39.60  Aligned_cols=139  Identities=10%  Similarity=0.053  Sum_probs=85.5

Q ss_pred             EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---------EEEEEEcCCeEEEeecCCCC-CceeeEeeeccC
Q 046226          106 YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---------RVYAAYGDGKIRVWRSTWDN-GVKHVKLATIPK  175 (434)
Q Consensus       106 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~~s~dg~i~vwd~~~~~-~~~~~~~~~~~~  175 (434)
                      ..|+....++--|++.|+.+.....|...  -+.|.|.         .-++|-.+..|.-.|.+-.. .+.......   
T Consensus       484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd---  558 (776)
T COG5167         484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD---  558 (776)
T ss_pred             ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh---
Confidence            34555556777788889999988888775  4567664         34556566666555544322 111111000   


Q ss_pred             CCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeC
Q 046226          176 TGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD  255 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~  255 (434)
                                     ........+..- -...++++|+..|-|++||--..+....+.+-...|..+....+|..+.+.-
T Consensus       559 ---------------Y~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         559 ---------------YKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             ---------------cccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence                           011122222222 2467999999999999999755455556677788999999999993333333


Q ss_pred             CCeEEEEecc
Q 046226          256 DATVRVWRRY  265 (434)
Q Consensus       256 dg~i~iwd~~  265 (434)
                      ...+.+-|++
T Consensus       623 k~yllL~d~~  632 (776)
T COG5167         623 KNYLLLTDVP  632 (776)
T ss_pred             cceEEEEecc
Confidence            4577787775

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.49  E-value=4.5  Score=38.38  Aligned_cols=153  Identities=8%  Similarity=0.054  Sum_probs=86.0

Q ss_pred             cccEEEEEE-cCCEEEEEe---CCCeEEEecCCCceeEeeccCCCccEEEEEEeCC------EEEEEEcCCeEEEeecCC
Q 046226           92 DGQILCIAV-GNGFIYTGS---DSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD------RVYAAYGDGKIRVWRSTW  161 (434)
Q Consensus        92 ~~~v~~~~~-~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~------~l~~~s~dg~i~vwd~~~  161 (434)
                      -.+|..++| ||+.++--.   .+|.+++=|   ...+..|    ..|..+.|.|-      .+++......|.||.+..
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            347889999 776554332   234443322   2233333    34889999884      678888899999998752


Q ss_pred             CCCcee-eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC--eeEEEcccCccC
Q 046226          162 DNGVKH-VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS--KCIETIQAHSEP  238 (434)
Q Consensus       162 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~  238 (434)
                      ...... .......+-..             ...---..+.|+|....|++-.....=.++++...  +....+ ...+.
T Consensus        92 s~~e~~K~l~sQtcEi~e-------------~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~  157 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIRE-------------PFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGL  157 (671)
T ss_pred             CccccccceeeeeeeccC-------------CcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCce
Confidence            211100 00000000000             00011234678898888777665554455666432  333334 35678


Q ss_pred             eEEEEEcCCC--eEEEEeCCCeEEEEecc
Q 046226          239 INALVVADDG--VLYSASDDATVRVWRRY  265 (434)
Q Consensus       239 v~~~~~~~~~--~l~s~~~dg~i~iwd~~  265 (434)
                      |.|.+|..||  ++++.+..=.-++||-.
T Consensus       158 IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  158 IHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            9999999999  44444555556788743

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.23  E-value=6.7  Score=39.28  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=29.4

Q ss_pred             CcCCCeEEEEEecC---CCEEEEEecCCcEEEEEcCCC
Q 046226          192 KHMGPITSIAINVS---DDTLYSASLDKTIKVWRIRDS  226 (434)
Q Consensus       192 ~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~  226 (434)
                      .+...|..+.|+|.   +..|++-+.|+++++||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            34568999999996   588999999999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.21  E-value=4.8  Score=39.31  Aligned_cols=49  Identities=20%  Similarity=0.282  Sum_probs=40.5

Q ss_pred             CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecc
Q 046226          216 KTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRY  265 (434)
Q Consensus       216 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~  265 (434)
                      -.|+|++. +|+.+..+......+-.+.|+.+..|++...+|.+++|++.
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~  112 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL  112 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc
Confidence            45888886 57777776655568889999988899999999999999976

>PRK13684 Ycf48-like protein; Provisional

Probab=94.10  E-value=4.3  Score=36.60  Aligned_cols=155  Identities=7%  Similarity=-0.021  Sum_probs=80.5

Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEE-EcCCCeeEEEc-ccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcc
Q 046226          194 MGPITSIAINVSDDTLYSASLDKTIKVW-RIRDSKCIETI-QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQ  271 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vw-d~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  271 (434)
                      ...+.++.+.+++.+++++. .|.+..- |- .++.-... ..-...++++.+.+++.++..+..|.+++=..+   ...
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d---~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD---DLE  246 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCC---CCC
Confidence            45688899998887665555 5655432 22 22222222 233467889999988855555667876542111   112


Q ss_pred             eeEEEEEe-cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe-eCCEEEEecCCC
Q 046226          272 LHTLILTL-TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-VANYVISGSADS  349 (434)
Q Consensus       272 ~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg  349 (434)
                      ........ ......+..+.+.+++..+++ +.+|.|.. .... ....+.......-......+.+ +++..+..+..|
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G  323 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG  323 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence            22211110 112235778888887775554 45675553 2221 1222221110111123455554 456666677788


Q ss_pred             cEEEEec
Q 046226          350 TSRVWAR  356 (434)
Q Consensus       350 ~i~iwd~  356 (434)
                      .|.-|+-
T Consensus       324 ~il~~~~  330 (334)
T PRK13684        324 VLLRYVG  330 (334)
T ss_pred             eEEEecC
Confidence            8877753

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.90  E-value=0.3  Score=28.19  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=25.6

Q ss_pred             CCeEEEEEecCC---CEEEEEecCCcEEEEEcCC
Q 046226          195 GPITSIAINVSD---DTLYSASLDKTIKVWRIRD  225 (434)
Q Consensus       195 ~~v~~~~~~~~~---~~l~s~~~dg~i~vwd~~~  225 (434)
                      +.|.++.|+|+.   .+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4788888789999999985

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.90  E-value=0.5  Score=39.45  Aligned_cols=64  Identities=13%  Similarity=0.243  Sum_probs=46.6

Q ss_pred             EecCCCEEEEEecCCcEEEEEcCCCeeEEEc-------c-------cCccCeEEEEEcCCCeEEEEeCCCeEEEEecc
Q 046226          202 INVSDDTLYSASLDKTIKVWRIRDSKCIETI-------Q-------AHSEPINALVVADDGVLYSASDDATVRVWRRY  265 (434)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~  265 (434)
                      +...+.+|++.+.+|.+++||+.+++.+..-       .       .....|..+.+..+|..+..-.+|....|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            3456889999999999999999988764332       1       24567888888888833334456788888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.60  E-value=0.52  Score=43.29  Aligned_cols=76  Identities=11%  Similarity=0.091  Sum_probs=53.2

Q ss_pred             ccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC----eEEEEEcCC--------------C--e
Q 046226          190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP----INALVVADD--------------G--V  249 (434)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~--------------~--~  249 (434)
                      +......+.+++.+|++++.++...-|.|.++|+.++..++.+++-.+.    +....-...              .  +
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            3345667899999999998888888899999999999988888764432    111111111              1  3


Q ss_pred             EEEEeCCCeEEEEecc
Q 046226          250 LYSASDDATVRVWRRY  265 (434)
Q Consensus       250 l~s~~~dg~i~iwd~~  265 (434)
                      ++-+-..|.|.||+++
T Consensus       383 vIyaprRg~lEvW~~~  398 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMR  398 (415)
T ss_pred             EEEeccCCeEEEEecC
Confidence            4455667888888876

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=93.32  E-value=6.5  Score=36.17  Aligned_cols=40  Identities=10%  Similarity=-0.069  Sum_probs=20.6

Q ss_pred             EEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCC
Q 046226          307 IHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSAD  348 (434)
Q Consensus       307 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d  348 (434)
                      +.+||....  .+.....+........++..++.+++.|+..
T Consensus       314 ~e~yd~~~~--~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNG--KWQKVGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCC--cccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            457887643  2332222222222234566677788888754

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.17  E-value=0.014  Score=52.79  Aligned_cols=147  Identities=14%  Similarity=0.102  Sum_probs=95.2

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCc
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      +-.......|-+.+.-++.++.+..+..||-. ++...... ..+....++|.-++  .++.+-..+.+.+||+...   
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~e---  107 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE---  107 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhh---
Confidence            33344555677877778888889999999953 44443333 34455677888777  6666778899999998721   


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CCEEEEecCCC
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGSADS  349 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg  349 (434)
                      ...+.... ..+...  -+.|++....++.+...|.+.|++.........    ...|...++++++. .++.+.++.|.
T Consensus       108 ytqqLE~g-g~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv----~Gkh~RRgtq~av~lEd~vil~dcd~  180 (615)
T KOG2247|consen  108 YTQQLESG-GTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV----MGKHQRRGTQIAVTLEDYVILCDCDN  180 (615)
T ss_pred             hHHHHhcc-CcchHH--HHhhccCCccccccccccceEEEeccchhhhhh----hcccccceeEEEecccceeeecCcHH
Confidence            11111111 111111  278899889999999999999999754433322    22388888898887 45666666655


Q ss_pred             cE
Q 046226          350 TS  351 (434)
Q Consensus       350 ~i  351 (434)
                      .+
T Consensus       181 ~L  182 (615)
T KOG2247|consen  181 TL  182 (615)
T ss_pred             HH
Confidence            43

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.02  E-value=0.7  Score=38.61  Aligned_cols=73  Identities=16%  Similarity=0.118  Sum_probs=51.0

Q ss_pred             ceEEEEeeCCEEEEecCCCcEEEEeccCCCceee---EE-Eee-------ccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226          331 AVMCLASVANYVISGSADSTSRVWAREQDGRHTM---LA-VLV-------GHRGPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       331 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~-------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                      ++..+...+++|++.+.+|.+++||+.+.+....   +. .+.       .....|..+.+..+         |.-|++-
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~---------G~PiV~l   84 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN---------GVPIVTL   84 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC---------CCEEEEE
Confidence            5566888899999999999999999998631100   00 011       34566778888766         6667766


Q ss_pred             ecCCeEEEEecCCC
Q 046226          400 SLDGVLKMWRVTRP  413 (434)
Q Consensus       400 ~~Dg~v~iw~~~~~  413 (434)
                      + +|..+.|+.+-+
T Consensus        85 s-ng~~y~y~~~L~   97 (219)
T PF07569_consen   85 S-NGDSYSYSPDLG   97 (219)
T ss_pred             e-CCCEEEeccccc
Confidence            5 578888887644

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.92  E-value=3  Score=38.13  Aligned_cols=105  Identities=10%  Similarity=0.118  Sum_probs=71.1

Q ss_pred             CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE----EEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccc
Q 046226          192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI----ETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFY  267 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~  267 (434)
                      ...++|.++.|++|.+.|++--.+++|.+++....+..    .+.+.....|....|....-++.....| +-+|-..  
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~--  140 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVL--  140 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEc--
Confidence            35679999999999999999999999999998443322    2223344568889998766555555544 5556433  


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  302 (434)
                         ...........+...|.-..|.++-+.++.++
T Consensus       141 ---pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  141 ---PEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             ---hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence               22333444556677888888888777654443

>PRK10115 protease 2; Provisional

Probab=92.81  E-value=12  Score=37.69  Aligned_cols=196  Identities=11%  Similarity=0.040  Sum_probs=97.0

Q ss_pred             CeEEEEEecCCCEEEEEec-----CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCC-----CeEEEEe
Q 046226          196 PITSIAINVSDDTLYSASL-----DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDD-----ATVRVWR  263 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~d-----g~i~iwd  263 (434)
                      .+..+.++|++++|+.+..     ...|++.|+.+++.+...-....  ..++|.+|+  ++++...+     ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4667889999998886533     23689999988864322221221  458999887  44443322     2566666


Q ss_pred             cccccCcceeEEEEEecccccCeE-EEEEecCCCEEEEEcC---CCeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226          264 RYFYSENQLHTLILTLTAKYSPVK-TLTLTLDDGLLYGGCT---DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA  339 (434)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  339 (434)
                      +.  +.......+..  ....... .+..+.++++++..+.   ++.+.+++...........  +.........+.-.+
T Consensus       206 lg--t~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  279 (686)
T PRK10115        206 IG--TPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF--LPRRKDHEYSLDHYQ  279 (686)
T ss_pred             CC--CChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE--EECCCCCEEEEEeCC
Confidence            55  22112222322  2222222 3333447777665443   4578888854322111110  111111112222223


Q ss_pred             CEEEEecC----CCcEEEEeccCCCceeeEEEeecc-c-cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          340 NYVISGSA----DSTSRVWAREQDGRHTMLAVLVGH-R-GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       340 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~h-~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      +.|..-+.    ...|...++.....+   ..+..+ . ..|..+.+..          ..++++...+|.-+++-++.
T Consensus       280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~---~~l~~~~~~~~i~~~~~~~----------~~l~~~~~~~g~~~l~~~~~  345 (686)
T PRK10115        280 HRFYLRSNRHGKNFGLYRTRVRDEQQW---EELIPPRENIMLEGFTLFT----------DWLVVEERQRGLTSLRQINR  345 (686)
T ss_pred             CEEEEEEcCCCCCceEEEecCCCcccC---eEEECCCCCCEEEEEEEEC----------CEEEEEEEeCCEEEEEEEcC
Confidence            33322222    223444444422121   233344 3 3577777763          45777777888877766653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.77  E-value=5.8  Score=34.10  Aligned_cols=110  Identities=16%  Similarity=0.058  Sum_probs=64.1

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEE-cCCCeeE-EEccc--CccCeEEEEEcCCC-eEEEEe---CCCeEEEEecccc
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWR-IRDSKCI-ETIQA--HSEPINALVVADDG-VLYSAS---DDATVRVWRRYFY  267 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~-~~~~~--~~~~v~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~  267 (434)
                      .+..-.|.+++...+....+...+++. ...++.. .....  ....|..+.++||| +++...   .++.|.+=-+...
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            566678888877666666566666663 2333221 11211  11289999999999 444433   4577777655422


Q ss_pred             cCc---ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226          268 SEN---QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG  305 (434)
Q Consensus       268 ~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  305 (434)
                      ...   ...............+..+.|.+++.+++.+...+
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence            222   11112222223356889999999998877776544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.77  E-value=7.2  Score=35.14  Aligned_cols=59  Identities=15%  Similarity=0.081  Sum_probs=38.7

Q ss_pred             CCEEEEecCCCcEEEEeccCCCceeeEEE-eeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEE
Q 046226          339 ANYVISGSADSTSRVWAREQDGRHTMLAV-LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK  406 (434)
Q Consensus       339 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~  406 (434)
                      +.+|++.-..+.|....++.+........ +.....++..+++.|+         |.+.++-+.+|.|+
T Consensus       271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD---------G~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD---------GALYVSDDSDGKIY  330 (331)
T ss_dssp             TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT---------SEEEEEE-TTTTEE
T ss_pred             CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC---------CeEEEEECCCCeEe
Confidence            44666666677888888875533222333 2344458999999999         88888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.76  E-value=3.1  Score=43.24  Aligned_cols=156  Identities=13%  Similarity=0.218  Sum_probs=91.8

Q ss_pred             EEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE--------ecC
Q 046226          135 VVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI--------NVS  205 (434)
Q Consensus       135 v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~  205 (434)
                      -..+-+-|. .-+-.+.|+.+.+|+.+++.....+.                      +-...|..|..        .|.
T Consensus        81 ~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d----------------------~~shtIl~V~LvkPkpgvFv~~  138 (1311)
T KOG1900|consen   81 KTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYD----------------------GLSHTILKVGLVKPKPGVFVPE  138 (1311)
T ss_pred             eeeeccchhhcceEEEeCCeEEEEEcCCCCcccccc----------------------chhhhheeeeeecCCCCcchhh
Confidence            344455555 34445679999999998866555442                      22333433332        222


Q ss_pred             CCEEEEEecCCcEEEEEcCCCee---E------EEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcc-----
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKC---I------ETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQ-----  271 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~---~------~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----  271 (434)
                      =++++....--.|.++-+.-.+.   .      ..+....-.|.|+....+|.++.+|.||  .+|.+.......     
T Consensus       139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~r  216 (1311)
T KOG1900|consen  139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSR  216 (1311)
T ss_pred             hheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcc
Confidence            23333333344566654421110   1      1222335578899988888888888888  556543111100     


Q ss_pred             e-------------eEEEEEec-ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          272 L-------------HTLILTLT-AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       272 ~-------------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      .             ......+. .+..+|..+.++...+.+++-++.|+|.+||+..
T Consensus       217 c~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  217 CRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            0             00011223 5567999999999999999999999999999875

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.63  E-value=6  Score=33.92  Aligned_cols=102  Identities=16%  Similarity=0.089  Sum_probs=65.8

Q ss_pred             CeEEEEEecCCC-EEEEEecCCc-EEEEEcCCCeeEEEcccCcc--CeEEEEEcCCC-eEEEEeC-----CCeEEEEecc
Q 046226          196 PITSIAINVSDD-TLYSASLDKT-IKVWRIRDSKCIETIQAHSE--PINALVVADDG-VLYSASD-----DATVRVWRRY  265 (434)
Q Consensus       196 ~v~~~~~~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-~l~s~~~-----dg~i~iwd~~  265 (434)
                      ....|+|+|... -++.+-.-|+ ..++|....+...++...++  ..-.=.|++|| +|++.-.     .|.|-+||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            344567777543 3444544453 56888887766555543222  11223589999 5554433     3789999987


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  302 (434)
                           .....+-.+..|.-....+.+.+||+.++.+.
T Consensus       149 -----~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         149 -----EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             -----cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence                 34445566777777888999999999988764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.58  E-value=0.46  Score=27.45  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=27.0

Q ss_pred             cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      +.|+++.|+|....      ..+|+-+-.-|.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~------~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGG------NDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCc------ccEEEEEccCCeEEEEEcccC
Confidence            46889999987411      168888888899999999853

It contains a characteristic DLL sequence motif.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=92.44  E-value=14  Score=37.78  Aligned_cols=176  Identities=12%  Similarity=0.151  Sum_probs=97.6

Q ss_pred             cEEEEEcCCCeeEEEcccCcc----CeEEEEEcCCC---eEEEEe-----------CCCeEEEEecccccCcceeEEEEE
Q 046226          217 TIKVWRIRDSKCIETIQAHSE----PINALVVADDG---VLYSAS-----------DDATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       217 ~i~vwd~~~~~~~~~~~~~~~----~v~~~~~~~~~---~l~s~~-----------~dg~i~iwd~~~~~~~~~~~~~~~  278 (434)
                      .|++.|..+++.+..+....+    .+..+.|+...   +++++.           .+|.++.|++-.  ........ .
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~--~g~~lell-h  930 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVR--NGDKLELL-H  930 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEe--cCceeeee-e
Confidence            477788777765554442221    34455555333   222222           244566666541  11111121 1


Q ss_pred             ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226          279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       279 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      ...-.+++  .++.|...++++| ....+++||+...+...+.  .++.-...|..+.+.+..+++|...-.+.++..+.
T Consensus       931 ~T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~--e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen  931 KTEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKC--ELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred             ccCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhh--hhccCceEEEEEeecceEEEEeeccceEEEEEEec
Confidence            12222333  4556766666655 4678999999755443332  23334567888899999999998777776665554


Q ss_pred             CCceeeEEEeec--cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          359 DGRHTMLAVLVG--HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       359 ~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      ..  ..+..+..  -...|+++.+..          ...+|.+..=|.+.+-.+..
T Consensus      1006 ~~--n~l~~fadD~~pR~Vt~~~~lD----------~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1006 ED--NQLIVFADDPVPRHVTALELLD----------YDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CC--CeEEEEeCCCccceeeEEEEec----------CCceeeccccCcEEEEECCC
Confidence            32  23333333  233566665554          34688888878887777653

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.44  E-value=5.4  Score=41.58  Aligned_cols=141  Identities=11%  Similarity=0.264  Sum_probs=85.3

Q ss_pred             eCCCeEEEecCCCceeEeeccCCCccEEEEEEe---CC-------EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226          109 SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVS---HD-------RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG  178 (434)
Q Consensus       109 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~-------~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (434)
                      +.|+.+.+|+.+++.....+.+-...|..+..-   |+       +++..+.--.|.++-+...+........       
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f-------  168 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF-------  168 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc-------
Confidence            357899999999988788787777777776542   22       4444444555666654322211111000       


Q ss_pred             ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc----CCC---e-e----------------EEEcc-
Q 046226          179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI----RDS---K-C----------------IETIQ-  233 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~----~~~---~-~----------------~~~~~-  233 (434)
                       ...+.     ..-..-.|.|+....+|+.|++|- ||.  +|.+    ..+   + +                +-.+. 
T Consensus       169 -~~~~~-----i~~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~  239 (1311)
T KOG1900|consen  169 -NTSFK-----ISVDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG  239 (1311)
T ss_pred             -cccee-----eecCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence             00000     001355788998777777777665 564  4443    211   1 1                11222 


Q ss_pred             cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226          234 AHSEPINALVVADDG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~  265 (434)
                      .+.++|..+.+.... .+.+-+..|.|.+||+.
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~  272 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIG  272 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEcc
Confidence            467799999998666 88899999999999987

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.38  E-value=6.4  Score=33.60  Aligned_cols=194  Identities=11%  Similarity=-0.003  Sum_probs=111.8

Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce
Q 046226          194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      ...-..++-.+||..-+++...+.|--.|..+|+....--+....-..|..-||+ .-++-+.. .|.-.|.+   ....
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpk---t~ev  136 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPK---TLEV  136 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCc---ccce
Confidence            3445677888999999999888999999999998765544555566788888998 44433322 45555543   1122


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEEEcC---------CCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI  343 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  343 (434)
                      .+................|++.|++-+++..         .+.|++|+..            ++....=.|...+|..-+
T Consensus       137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvwy  204 (353)
T COG4257         137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVWY  204 (353)
T ss_pred             EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEEE
Confidence            2233333444567788899999998888753         2345555432            122222345556666555


Q ss_pred             EecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          344 SGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       344 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      +.-.+..|-..|...+.. +.+-.-.+.....+.+-.+|.         +..-+|....+.+..+|-...
T Consensus       205 aslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpi---------g~~wittwg~g~l~rfdPs~~  264 (353)
T COG4257         205 ASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPI---------GRAWITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             EeccccceEEcccccCCc-ceecCCCcccccccccccCcc---------CcEEEeccCCceeeEeCcccc
Confidence            555556666666555421 122111121112223333333         666666666677766665543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.38  E-value=8.3  Score=34.97  Aligned_cols=41  Identities=7%  Similarity=-0.048  Sum_probs=19.7

Q ss_pred             eEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCC
Q 046226          306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSAD  348 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d  348 (434)
                      .+.+||....  .......+........++..++.+++.|+.+
T Consensus       291 ~~e~yd~~~~--~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~  331 (346)
T TIGR03547       291 SSEVYALDNG--KWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN  331 (346)
T ss_pred             EeeEEEecCC--cccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence            4678887632  3333223322111222334566677777754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.02  E-value=6  Score=32.51  Aligned_cols=146  Identities=17%  Similarity=0.216  Sum_probs=81.4

Q ss_pred             CEEEEEecCCcEEEEEcC--CCeeEEEcccCccCeEEEEEcCCC-eEEEEeCC---C---eEEEE-ecccccCcc--ee-
Q 046226          207 DTLYSASLDKTIKVWRIR--DSKCIETIQAHSEPINALVVADDG-VLYSASDD---A---TVRVW-RRYFYSENQ--LH-  273 (434)
Q Consensus       207 ~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d---g---~i~iw-d~~~~~~~~--~~-  273 (434)
                      +.|+.+...+.|.+|++.  ..+.+.+|.. -+.|..+.++..| ++++--.+   .   .+|+| +.+......  .. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455555667889999998  3345666653 4788999999888 88876432   2   56665 222110000  00 


Q ss_pred             ------------------EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc------cccCcccC-c
Q 046226          274 ------------------TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL------QYGGALQG-H  328 (434)
Q Consensus       274 ------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~-~  328 (434)
                                        -.+..++ -..++.+++..|-..-|++|+ ++.+.+|.+.......      .+...+-. |
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~  185 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI  185 (215)
T ss_pred             EEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence                              0111111 134567788888544455555 5678899875433211      11111111 2


Q ss_pred             c-cceEEEEeeCCEEEEecCCCcEEEEec
Q 046226          329 T-HAVMCLASVANYVISGSADSTSRVWAR  356 (434)
Q Consensus       329 ~-~~v~~~~~~~~~l~s~~~dg~i~iwd~  356 (434)
                      . .....+++.++|+|..+. -.++++.+
T Consensus       186 ~~~~p~~v~ic~~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  186 DNFKPTQVAICEGYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             cCceEEEEEEEeeEEEEecC-CEEEEEEE
Confidence            1 234667788889888774 46666654

>PRK13684 Ycf48-like protein; Provisional

Probab=91.96  E-value=9.2  Score=34.51  Aligned_cols=157  Identities=11%  Similarity=-0.037  Sum_probs=83.1

Q ss_pred             ccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcc
Q 046226          236 SEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWF  315 (434)
Q Consensus       236 ~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  315 (434)
                      ...+.++.+.+++.++..+..|.+..- .+  .........  .......+..+.+.++++.++++ ..|.+++=..+ .
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~--~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d-~  244 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WE--PGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD-D  244 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cC--CCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC-C
Confidence            457889999998866666666765432 11  111223222  22344678899999998877765 45766432111 1


Q ss_pred             cccccccCcc-cCcccceEEEEee-CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcc
Q 046226          316 SAQLQYGGAL-QGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       316 ~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  393 (434)
                      ....+..... ......+.++.+. .+.++.++.+|.+. .....+..++.+.....-....+.+.+..+         +
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~---------~  314 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDP---------E  314 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCC---------C
Confidence            1122211110 1112345666665 33455566677665 344555444443221222235667777654         4


Q ss_pred             cEEEEeecCCeEEEEec
Q 046226          394 CTICTGSLDGVLKMWRV  410 (434)
Q Consensus       394 ~~l~s~~~Dg~v~iw~~  410 (434)
                      .. +..+..|.|.-|+-
T Consensus       315 ~~-~~~G~~G~il~~~~  330 (334)
T PRK13684        315 KG-FVLGQRGVLLRYVG  330 (334)
T ss_pred             ce-EEECCCceEEEecC
Confidence            44 55667888887763

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.66  E-value=9.7  Score=34.17  Aligned_cols=61  Identities=2%  Similarity=-0.022  Sum_probs=29.6

Q ss_pred             CCCEEEEEec-----CCcEEEEEcCCCe--eEEEcccCccCeEEEEEcCCCeEEEEeCCCe----EEEEecc
Q 046226          205 SDDTLYSASL-----DKTIKVWRIRDSK--CIETIQAHSEPINALVVADDGVLYSASDDAT----VRVWRRY  265 (434)
Q Consensus       205 ~~~~l~s~~~-----dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~----i~iwd~~  265 (434)
                      +++..+.|+.     ...+..||+.+.+  .+..+......-.+++...+.+++.|+.++.    +.+||+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~  194 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK  194 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence            4566666654     2368888887653  2222221111111222232336666766532    4567765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.58  E-value=6.5  Score=32.03  Aligned_cols=179  Identities=10%  Similarity=-0.049  Sum_probs=81.5

Q ss_pred             CCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeE--EEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226          205 SDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPIN--ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLT  280 (434)
Q Consensus       205 ~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  280 (434)
                      ++.++.+.+.  ...|++||+.+++.+..-.-....+.  .+.-..+....-.-.+|.-..+|.+...      ....+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~------~lg~~~  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE------ELGRFS  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh------hhcccc
Confidence            4555555543  34799999999987765443211111  1222223233344467777778766211      111111


Q ss_pred             ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc-cceEEEEe-eCCEEEEecCCCcEEEEeccC
Q 046226          281 AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT-HAVMCLAS-VANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       281 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~  358 (434)
                       ..+.-..++  .|+..|+.+....+++.-|..+........-+..+.. ..+.-+.| +|...+-.-.+..|...+.++
T Consensus       129 -y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s  205 (262)
T COG3823         129 -YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS  205 (262)
T ss_pred             -cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCC
Confidence             112223333  3555576666666666666543332222211111110 01122222 233333333333333344444


Q ss_pred             CCce---------eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226          359 DGRH---------TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       359 ~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                      ++..         ..+..-..|..-.+.+++.|..        +++++||-
T Consensus       206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~--------~r~~iTGK  248 (262)
T COG3823         206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQ--------DRFLITGK  248 (262)
T ss_pred             CcEEEEEEccCCchhcCccccccccccceeecCcC--------CeEEEecC
Confidence            3111         1122223455567788998884        57777773

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.55  E-value=2.4  Score=39.71  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=25.2

Q ss_pred             cCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       284 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      ..|..++..+..+.+++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488899999889999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.10  E-value=9  Score=32.77  Aligned_cols=195  Identities=10%  Similarity=0.026  Sum_probs=108.4

Q ss_pred             ccceeeeEEEeeccc--cEEEEEE-c-CCEEEEEeCCC--eEEEecCCCceeEeeccCC-CccEEEEEEeCCEEEEEEc-
Q 046226           79 SSSYRCISSVLKKDG--QILCIAV-G-NGFIYTGSDSN--VIRIWKQPEFTECGRLKAK-TSMVVAMEVSHDRVYAAYG-  150 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~--~v~~~~~-~-~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~l~~~s~-  150 (434)
                      +..++.+.++- |+.  -.-.+.| + |.++-+.+.-|  .|+.+|+.+++......-. .-.-..++...+.++--+. 
T Consensus        30 ~~~~~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk  108 (264)
T PF05096_consen   30 VYSYEVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK  108 (264)
T ss_dssp             EEEEEEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS
T ss_pred             eeeeEEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec
Confidence            34566666643 433  3556777 4 55556666555  8999999999877654432 2334567777887766665 


Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE  230 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  230 (434)
                      ++...+||..+-+.+..+.                       ..+.=..++  .+++.|+.......|..+|..+.+...
T Consensus       109 ~~~~f~yd~~tl~~~~~~~-----------------------y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~  163 (264)
T PF05096_consen  109 EGTGFVYDPNTLKKIGTFP-----------------------YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR  163 (264)
T ss_dssp             SSEEEEEETTTTEEEEEEE------------------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred             CCeEEEEccccceEEEEEe-----------------------cCCcceEEE--cCCCEEEEECCccceEEECCcccceEE
Confidence            8999999988766555553                       223334555  467777777777889999998887766


Q ss_pred             EcccC-----ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE-Ee----------cccccCeEEEEEec
Q 046226          231 TIQAH-----SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL-TL----------TAKYSPVKTLTLTL  293 (434)
Q Consensus       231 ~~~~~-----~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~----------~~~~~~v~~~~~~~  293 (434)
                      .+...     -..++.+.+. +| ..+=.=....|...|...  +.-....-. .+          .....-.+.|+++|
T Consensus       164 ~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t--G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~  240 (264)
T PF05096_consen  164 TIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET--GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDP  240 (264)
T ss_dssp             EEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT---BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEET
T ss_pred             EEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC--CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeC
Confidence            66532     2245667766 45 444344444555555541  111110000 00          01134578999998


Q ss_pred             CCCEEEEEc
Q 046226          294 DDGLLYGGC  302 (434)
Q Consensus       294 ~~~~l~~~~  302 (434)
                      ..+.|++.+
T Consensus       241 ~~~~l~vTG  249 (264)
T PF05096_consen  241 ETDRLFVTG  249 (264)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCEEEEEe
Confidence            766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.98  E-value=11  Score=35.29  Aligned_cols=26  Identities=0%  Similarity=0.036  Sum_probs=20.7

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEE
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVW  221 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vw  221 (434)
                      .|..+..++.|..++-.+.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            57778889999999988888865554

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.64  E-value=4.9  Score=41.91  Aligned_cols=33  Identities=12%  Similarity=0.162  Sum_probs=27.4

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRD  225 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  225 (434)
                      -......++|+|...+++.+..+|.|+++-...
T Consensus        34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCCcceeeccccceEEEEEecccEEEecccc
Confidence            344667788999999999999999999997643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.49  E-value=11  Score=32.52  Aligned_cols=151  Identities=11%  Similarity=-0.040  Sum_probs=79.7

Q ss_pred             CeEEEEEcCCC-eEEEEe---CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE-c
Q 046226          238 PINALVVADDG-VLYSAS---DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH-K  312 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~  312 (434)
                      .+.+.++++++ .++...   ....+.++...     .......    ....+..-.|++++...+....+...+++. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-----~~~~~~~----~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~   95 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-----GPVRPVL----TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDS   95 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-----Ccceeec----cCCccccccccCCCCEEEEEcCCCceEEEEec
Confidence            68899999999 554444   33445555432     1111111    223667778999977777766666666663 1


Q ss_pred             CcccccccccCcccCcccceEEEEee--CCEEEEe---cCCCcEEEEeccCCCce------eeEEEeeccccceeEEEEe
Q 046226          313 GWFSAQLQYGGALQGHTHAVMCLASV--ANYVISG---SADSTSRVWAREQDGRH------TMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~---~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~~  381 (434)
                      .......... ....-...|..+.++  |..++..   ..++.|.+=-+......      ..+.........++.++|.
T Consensus        96 ~~g~~~~~~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen   96 ASGTGEPVEV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             CCCcceeEEe-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence            1111111111 111111178777765  5544433   34677877765432211      1122222335678999999


Q ss_pred             ecccCCCCCCcccEEEEeec-CCeEEE
Q 046226          382 LGRFGEETEDEYCTICTGSL-DGVLKM  407 (434)
Q Consensus       382 ~~~~~~~~~~~~~~l~s~~~-Dg~v~i  407 (434)
                      ++         +.+++.+.. ++.+..
T Consensus       175 ~~---------~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  175 DD---------STLVVLGRSAGGPVVR  192 (253)
T ss_pred             CC---------CEEEEEeCCCCCceeE
Confidence            88         566555544 443444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.49  E-value=14  Score=33.90  Aligned_cols=147  Identities=12%  Similarity=0.089  Sum_probs=72.3

Q ss_pred             cEEEEEE--cCCEEEEEe-----------CCC-eEEEecCCC--ce--eEeeccCCCccEEEEEEeCCEEEEEEcCCeEE
Q 046226           94 QILCIAV--GNGFIYTGS-----------DSN-VIRIWKQPE--FT--ECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIR  155 (434)
Q Consensus        94 ~v~~~~~--~~~~l~tg~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~  155 (434)
                      ....|+|  +|+++++-.           ..+ .|.+++-.+  ++  ....+...-.....+++.++.|+++......+
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~   94 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILF   94 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEE
Confidence            3567778  556555532           223 676665432  22  22333333345678888887766666554334


Q ss_pred             EeecCCCCCce-eeEeeeccCCCCceeEEEeccccc-cCcCCCeEEEEEecCCCEEEEEecC------------------
Q 046226          156 VWRSTWDNGVK-HVKLATIPKTGGAVRNLIVGKDKM-MKHMGPITSIAINVSDDTLYSASLD------------------  215 (434)
Q Consensus       156 vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d------------------  215 (434)
                      +.|........ ..+            .+......- ..+......++|.|||.+.++-+..                  
T Consensus        95 ~~d~~gdg~ad~~~~------------~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~  162 (367)
T TIGR02604        95 LRDKDGDDKADGERE------------VLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGL  162 (367)
T ss_pred             EeCCCCCCCCCCccE------------EEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccccc
Confidence            44544321111 000            000000000 0134557889999998876654421                  


Q ss_pred             -CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEE
Q 046226          216 -KTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA  253 (434)
Q Consensus       216 -g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~  253 (434)
                       |.|.-+|..+++. ..+.........++|++++.+++.
T Consensus       163 ~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       163 GGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             CceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEE
Confidence             3455555554443 222222233457888888844443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.39  E-value=0.92  Score=44.18  Aligned_cols=91  Identities=16%  Similarity=0.258  Sum_probs=46.2

Q ss_pred             eCCEEEEEEcCCeEEEeecCCCC---C-ceeeEeeeccCCCCceeEEEec-cccccCcCCCeEEEEEec----CCCEEEE
Q 046226          141 SHDRVYAAYGDGKIRVWRSTWDN---G-VKHVKLATIPKTGGAVRNLIVG-KDKMMKHMGPITSIAINV----SDDTLYS  211 (434)
Q Consensus       141 ~~~~l~~~s~dg~i~vwd~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~----~~~~l~s  211 (434)
                      +++.++.+..||.+...+.....   . .......... -...+..+... ..........+..++++.    +..++++
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSS-WLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHH-HHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCc-hhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            56689999999999888766411   1 1111100000 00000000000 000001233455566655    7789999


Q ss_pred             EecCCcEEEEEcCCCeeEEEc
Q 046226          212 ASLDKTIKVWRIRDSKCIETI  232 (434)
Q Consensus       212 ~~~dg~i~vwd~~~~~~~~~~  232 (434)
                      .+.|+.+++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN02193 nitrile-specifier protein

Probab=90.34  E-value=17  Score=34.67  Aligned_cols=147  Identities=9%  Similarity=-0.001  Sum_probs=68.4

Q ss_pred             CCCEEEEEecC-----CcEEEEEcCCCeeEE--Eccc-C-ccCeEEEEEcCCCeEEEEeCCC-----eEEEEecccccCc
Q 046226          205 SDDTLYSASLD-----KTIKVWRIRDSKCIE--TIQA-H-SEPINALVVADDGVLYSASDDA-----TVRVWRRYFYSEN  270 (434)
Q Consensus       205 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~-~-~~~v~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~  270 (434)
                      ++.+++.|+.+     ..+.++|+.+.+-..  .+.. . ...-.+++...+.+++.|+.++     .+..||+..    
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t----  303 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD----  303 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC----
Confidence            45556666654     358888987654222  1110 0 1111233333333666666543     356666541    


Q ss_pred             ceeEEEEEe---cccccCeEEEEEecCCCEEEEEcCC----CeEEEEEcCcccccccccCcc---cCcccceEEEEeeCC
Q 046226          271 QLHTLILTL---TAKYSPVKTLTLTLDDGLLYGGCTD----GYIHYWHKGWFSAQLQYGGAL---QGHTHAVMCLASVAN  340 (434)
Q Consensus       271 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~  340 (434)
                      .........   ...... ..++. -++++++.++.+    ..+.+||+.+..  +......   ........+..+.++
T Consensus       304 ~~W~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~~~~~~  379 (470)
T PLN02193        304 KKWFHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASAAVGKH  379 (470)
T ss_pred             CEEEeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEEEECCE
Confidence            122211110   000111 12222 256677776655    458889876432  2221111   111112233445667


Q ss_pred             EEEEecCC--------------CcEEEEeccCC
Q 046226          341 YVISGSAD--------------STSRVWAREQD  359 (434)
Q Consensus       341 ~l~s~~~d--------------g~i~iwd~~~~  359 (434)
                      +++.|+.+              ..+.+||+.+.
T Consensus       380 iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        380 IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             EEEECCccCCccccccCccceeccEEEEEcCcC
Confidence            77788753              24788888765

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.67  E-value=18  Score=33.94  Aligned_cols=31  Identities=16%  Similarity=0.161  Sum_probs=23.5

Q ss_pred             cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      ..|.+++..+.         .+.|++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~---------r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPS---------RRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETT---------TTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCC---------cCEEEEEeCCCcEEEEEEeC
Confidence            34788888777         57899999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=89.55  E-value=30  Score=36.27  Aligned_cols=115  Identities=14%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC-CCeeEEE-cccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccC
Q 046226          192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIR-DSKCIET-IQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSE  269 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~-~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  269 (434)
                      ...++|..++=.  ..+|+++. ...|.+|+++ ....+.. |..-.-.+.++..- .++|+.|.--..|.+.-..   .
T Consensus      1095 E~KGtVsavceV--~G~l~~~~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~v-knlIl~gDV~ksisfl~fq---e 1167 (1366)
T KOG1896|consen 1095 EQKGTVSAVCEV--RGHLLSSQ-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVV-KNLILAGDVMKSISFLGFQ---E 1167 (1366)
T ss_pred             hcccceEEEEEe--ccEEEEcc-CcEEEEEEeccCCcceeeEEeccceeEEehhhh-hhheehhhhhhceEEEEEc---c
Confidence            456677776532  34566655 4579999994 3332211 11111122222211 2256666666666665443   2


Q ss_pred             cceeEEEEEecccccCeEEEEEecCCC--EEEEEcCCCeEEEEEcC
Q 046226          270 NQLHTLILTLTAKYSPVKTLTLTLDDG--LLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~  313 (434)
                      +...-.........-.+.++.|--+|.  .++++..+++|++|-..
T Consensus      1168 ep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1168 EPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred             CceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence            222222222233334677888877665  57888999999998653

>PLN02153 epithiospecifier protein

Probab=89.45  E-value=16  Score=33.07  Aligned_cols=23  Identities=13%  Similarity=0.082  Sum_probs=14.4

Q ss_pred             CCCEEEEEecC-------CcEEEEEcCCCe
Q 046226          205 SDDTLYSASLD-------KTIKVWRIRDSK  227 (434)
Q Consensus       205 ~~~~l~s~~~d-------g~i~vwd~~~~~  227 (434)
                      ++.+++.|+.+       ..+.+||+.+.+
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~   61 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHT   61 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCE
Confidence            45566666653       357888887654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.16  E-value=15  Score=32.31  Aligned_cols=185  Identities=11%  Similarity=0.146  Sum_probs=96.9

Q ss_pred             eEEEecCCCceeEeeccC------CCccEEEEEEeC-------CEEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226          113 VIRIWKQPEFTECGRLKA------KTSMVVAMEVSH-------DRVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGG  178 (434)
Q Consensus       113 ~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~-------~~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (434)
                      .|.+||+.+.+.++++.-      ..+....+.+..       ...+.+. ..+.|.|+|+.+++..+...-...+  ..
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~--~p  112 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSP--DP  112 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTT--S-
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcce--ec
Confidence            788999999988877643      245678888876       1333333 3568999999887654443221111  11


Q ss_pred             ceeEEEeccccccCcCCCeEEEEEec---CCCEEEEEecCCcEEEEEcCC-----C---------eeEEEcccCccCeEE
Q 046226          179 AVRNLIVGKDKMMKHMGPITSIAINV---SDDTLYSASLDKTIKVWRIRD-----S---------KCIETIQAHSEPINA  241 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~-----~---------~~~~~~~~~~~~v~~  241 (434)
                      ....+......+ .....+..++.+|   +++.|+-....+ -++|.+.+     .         +.+..+.........
T Consensus       113 ~~~~~~i~g~~~-~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g  190 (287)
T PF03022_consen  113 DAGPFTIGGESF-QWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDG  190 (287)
T ss_dssp             SSEEEEETTEEE-EETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECE
T ss_pred             cccceeccCceE-ecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCce
Confidence            111121111111 2334488888876   667777665443 33343322     1         112222111235567


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec--CCCEEEEE
Q 046226          242 LVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL--DDGLLYGG  301 (434)
Q Consensus       242 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~  301 (434)
                      +++.++| ++++--..+.|..|+....-.......+..-...-..+..+.+.+  +|.+.+..
T Consensus       191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            8888888 677777888999999872222222333333222245677888877  55544433

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=89.15  E-value=17  Score=32.96  Aligned_cols=23  Identities=0%  Similarity=0.069  Sum_probs=14.3

Q ss_pred             CCCEEEEEecC-----------CcEEEEEcCCCe
Q 046226          205 SDDTLYSASLD-----------KTIKVWRIRDSK  227 (434)
Q Consensus       205 ~~~~l~s~~~d-----------g~i~vwd~~~~~  227 (434)
                      +++..+.|+.+           ..+..||..+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~   96 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS   96 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence            56666666643           247778877654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=89.06  E-value=1.5  Score=22.41  Aligned_cols=24  Identities=25%  Similarity=0.578  Sum_probs=16.7

Q ss_pred             cEEEEEEcCCEEEEEeCCCeEEEe
Q 046226           94 QILCIAVGNGFIYTGSDSNVIRIW  117 (434)
Q Consensus        94 ~v~~~~~~~~~l~tg~~dg~i~iw  117 (434)
                      .|.+++...++++++...+.+|+|
T Consensus         3 ~i~aia~g~~~vavaTS~~~lRif   26 (27)
T PF12341_consen    3 EIEAIAAGDSWVAVATSAGYLRIF   26 (27)
T ss_pred             eEEEEEccCCEEEEEeCCCeEEec
Confidence            466677766677777777777776

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.99  E-value=17  Score=32.76  Aligned_cols=106  Identities=18%  Similarity=0.125  Sum_probs=55.5

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCee---EEEc----ccCccCeEEEEEcCC----CeEEEEeC-------CC
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKC---IETI----QAHSEPINALVVADD----GVLYSASD-------DA  257 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~l~s~~~-------dg  257 (434)
                      ..+.|+|.|++++|++ ...|.|++++ ..+..   +..+    .........++++|+    +.|.....       ..
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999876664 5599999999 44433   3232    124557899999994    53333222       12


Q ss_pred             eEEEEecccccC----cceeEEEEEecc---cccCeEEEEEecCCCEEEEEcC
Q 046226          258 TVRVWRRYFYSE----NQLHTLILTLTA---KYSPVKTLTLTLDDGLLYGGCT  303 (434)
Q Consensus       258 ~i~iwd~~~~~~----~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~  303 (434)
                      ..+|........    .....+......   .......|.|.|||.+.++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            233333221111    111222222222   2345667999999976666543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.80  E-value=19  Score=33.12  Aligned_cols=14  Identities=21%  Similarity=0.223  Sum_probs=8.9

Q ss_pred             EEeeCCEEEEecCC
Q 046226          335 LASVANYVISGSAD  348 (434)
Q Consensus       335 ~~~~~~~l~s~~~d  348 (434)
                      ....+.+++.|+.+
T Consensus       276 ~~~~~~iyv~GG~~  289 (376)
T PRK14131        276 GYSNGVLLVAGGAN  289 (376)
T ss_pred             eeECCEEEEeeccC
Confidence            34566777777754

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=88.77  E-value=16  Score=32.33  Aligned_cols=208  Identities=8%  Similarity=-0.064  Sum_probs=96.7

Q ss_pred             cCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCCee---------------EEEcccCccCeEEEEEcCCC--eEEEEe
Q 046226          193 HMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDSKC---------------IETIQAHSEPINALVVADDG--VLYSAS  254 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~--~l~s~~  254 (434)
                      +...|.++...+..+.|++-+ ....++++++.....               ....-.+........+....  .++++.
T Consensus        41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A  120 (302)
T smart00036       41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA  120 (302)
T ss_pred             CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence            677899999998888777655 233499999843221               01111233333333333222  455555


Q ss_pred             CCCeEEEEecccccCcceeEEEEE----ecccccCeEEEEEecC--CCEEEEEcCCCeEEEEEcCc--cc-ccccccCcc
Q 046226          255 DDATVRVWRRYFYSENQLHTLILT----LTAKYSPVKTLTLTLD--DGLLYGGCTDGYIHYWHKGW--FS-AQLQYGGAL  325 (434)
Q Consensus       255 ~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~--~~-~~~~~~~~~  325 (434)
                      ...+|.++....  ..........    ......++..+..+++  ...+..|+..+...++++..  .. .........
T Consensus       121 ~~~~i~l~~~~~--~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~  198 (302)
T smart00036      121 LQSSVVLLQWYN--PLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLS  198 (302)
T ss_pred             cCCeEEEEEccC--hhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccc
Confidence            666777764431  1001111111    0011123333333333  45777777653344455432  10 000000001


Q ss_pred             cCcc-cceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCe
Q 046226          326 QGHT-HAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV  404 (434)
Q Consensus       326 ~~~~-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~  404 (434)
                      .... .++..+..+.+.++.+-++ ...+-|...... .....+. -.+...++++..           .+|+.-+. ..
T Consensus       199 ~~~~~~p~~i~~l~~~e~Llc~~~-~~v~Vn~~G~~~-~r~~~l~-w~~~p~~~~~~~-----------pyll~~~~-~~  263 (302)
T smart00036      199 EETSLKPISVVQVPRDEFLLCYDE-FGVFVNLYGKRR-SRNPILH-WEFMPESFAYHS-----------PYLLAFHD-NG  263 (302)
T ss_pred             cccccCceEEEEECCCeEEEEECc-EEEEEeCCCCcc-ccceEEE-cCCcccEEEEEC-----------CEEEEEcC-Cc
Confidence            1111 3455555554544444433 344445443111 1111121 233455667663           36666654 45


Q ss_pred             EEEEecCCCCccc
Q 046226          405 LKMWRVTRPKSSC  417 (434)
Q Consensus       405 v~iw~~~~~~~~~  417 (434)
                      |.++++.+++...
T Consensus       264 ievr~l~~~~l~q  276 (302)
T smart00036      264 IEIRSIKTGELLQ  276 (302)
T ss_pred             EEEEECCCCceEE
Confidence            9999999886543

Unpublished observations.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.70  E-value=14  Score=31.39  Aligned_cols=139  Identities=13%  Similarity=0.095  Sum_probs=70.8

Q ss_pred             EEEEEcCCCeeEEEccc-CccCeEEEEEcCCC-eEEEEeC-C--CeEEEEecccccCcceeEEEEEecccccCeEEEEEe
Q 046226          218 IKVWRIRDSKCIETIQA-HSEPINALVVADDG-VLYSASD-D--ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT  292 (434)
Q Consensus       218 i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  292 (434)
                      -.+||+.+++.. .+.. ..-...+-.+.+|| ++.+|+. +  ..+++++................-.....-.+...-
T Consensus        48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            457888876543 2322 22223333566888 6666664 2  457888754211111111111111222344455667


Q ss_pred             cCCCEEEEEcCCC-eEEEEEcCcccc-ccc--ccC----cccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226          293 LDDGLLYGGCTDG-YIHYWHKGWFSA-QLQ--YGG----ALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       293 ~~~~~l~~~~~dg-~i~i~d~~~~~~-~~~--~~~----~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      +||+.|+.|+.+. ...+|.-..... ...  +..    .....--+...+..+|++|+.+..+.  .|||..+.
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n  199 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN  199 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence            8999999988774 334444211111 111  111    11223345566777899998887654  45677765

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.43  E-value=2.8  Score=23.84  Aligned_cols=31  Identities=26%  Similarity=0.307  Sum_probs=23.8

Q ss_pred             cCCCEEEEEe-cCCcEEEEEcCCCeeEEEccc
Q 046226          204 VSDDTLYSAS-LDKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       204 ~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~  234 (434)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4677666654 578999999998888877765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.84  E-value=3.4  Score=40.25  Aligned_cols=72  Identities=10%  Similarity=0.079  Sum_probs=41.4

Q ss_pred             eCCEEEEecCCCcEEEEeccC----CCceeeEEEeecc--------------------ccceeEEEEeecccCCCCCCcc
Q 046226          338 VANYVISGSADSTSRVWAREQ----DGRHTMLAVLVGH--------------------RGPIRCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~h--------------------~~~v~~~~~~~~~~~~~~~~~~  393 (434)
                      ++..++.+..||.+.......    +..+... .+..+                    ...+..+++.....     .+.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  230 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEE-LFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEI-----NDD  230 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE----------ETT
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEE-EeCCCchhhhhhCcCCcccccCCCCCCccceEEEeccee-----CCC
Confidence            677888888899888887764    2111111 11111                    12344455554100     016


Q ss_pred             cEEEEeecCCeEEEEecCCCCc
Q 046226          394 CTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       394 ~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      .+|++.+.|+++|+||+.+++.
T Consensus       231 ~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  231 TFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             TEEEEEETTSEEEEEETTTTCE
T ss_pred             CEEEEEeCCCeEEEEECCCCeE
Confidence            7899999999999999999887

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.62  E-value=23  Score=32.55  Aligned_cols=196  Identities=15%  Similarity=0.114  Sum_probs=97.8

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCC--ccEEE-EEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT--SMVVA-MEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~-l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      .+..++++..||.|.-.|..++..+.....-.  ..+.. +......++.++.++.+..+|..+++.........     
T Consensus        67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~-----  141 (370)
T COG1520          67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG-----  141 (370)
T ss_pred             eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC-----
Confidence            55666667888888888888888664333221  11211 11223478999999988888887666655553211     


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc---cCeEEEEEcCCCeEEEEe
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS---EPINALVVADDGVLYSAS  254 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~s~~  254 (434)
                                      .-.+..-.+. ....++.++.++.+...|..+++.+.......   ..+..-....++.++.+.
T Consensus       142 ----------------~~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~  204 (370)
T COG1520         142 ----------------SPYYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGS  204 (370)
T ss_pred             ----------------CeEEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEec
Confidence                            0001111111 23344444467888888888888766644322   111111112344555555


Q ss_pred             C--CCeEEEEecccccCcceeEEEEEecccccCe------EEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc
Q 046226          255 D--DATVRVWRRYFYSENQLHTLILTLTAKYSPV------KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY  321 (434)
Q Consensus       255 ~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  321 (434)
                      .  ++.+.-.|..  .+................+      ..-.+. .+..++.++.++.+...|..+.+...+.
T Consensus       205 ~~~~~~~~a~~~~--~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~~W~~  276 (370)
T COG1520         205 DGYDGILYALNAE--DGTLKWSQKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGELIWSF  276 (370)
T ss_pred             CCCcceEEEEEcc--CCcEeeeeeeecccCcccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence            5  5545555543  2222222111111111101      000111 1223456667777777787665555543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.60  E-value=10  Score=34.78  Aligned_cols=170  Identities=13%  Similarity=0.075  Sum_probs=91.0

Q ss_pred             EEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc-cccCeE-EEEEecCCCEEEEEcCCCe
Q 046226          230 ETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-KYSPVK-TLTLTLDDGLLYGGCTDGY  306 (434)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~~dg~  306 (434)
                      ..+......|..+-..||+ .+..-+. ..+.++++....-+. .+......+ ....|+ .+..-..|.-+++++.||.
T Consensus       214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~-rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~  291 (733)
T COG4590         214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQI-RKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL  291 (733)
T ss_pred             hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccch-hhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence            3344455677888889999 3333322 678888876211111 111111011 001111 1122235667888999999


Q ss_pred             EEEE-EcCcccc-cccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          307 IHYW-HKGWFSA-QLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       307 i~i~-d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      |.-| |.+.... .......++-....+..+..+.  +-+++-...|++.++.....   +.+- +..--..+.-++++|
T Consensus       292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~---~~lL-~~~~~~~~~~~~~Sp  367 (733)
T COG4590         292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE---KLLL-FERAYQAPQLVAMSP  367 (733)
T ss_pred             eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC---ccee-hhhhhcCcceeeeCc
Confidence            8877 4432221 1122222222223444444443  36777788888888865543   1111 111222455688999


Q ss_pred             cccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          383 GRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       383 ~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      .         +.++++-. .|.++++.+++..+
T Consensus       368 ~---------~~~Ll~e~-~gki~~~~l~Nr~P  390 (733)
T COG4590         368 N---------QAYLLSED-QGKIRLAQLENRNP  390 (733)
T ss_pred             c---------cchheeec-CCceEEEEecCCCC
Confidence            8         77887753 57899999987654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.58  E-value=10  Score=28.54  Aligned_cols=111  Identities=8%  Similarity=-0.012  Sum_probs=60.6

Q ss_pred             EEcCCC-eEEEEeCCCeEEEEecccccCcce-eEEEEEecccccCeEEEEEec-----CCCEEEEEcCCCeEEEEEcCcc
Q 046226          243 VVADDG-VLYSASDDATVRVWRRYFYSENQL-HTLILTLTAKYSPVKTLTLTL-----DDGLLYGGCTDGYIHYWHKGWF  315 (434)
Q Consensus       243 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~  315 (434)
                      .|.... .|++++.-|+|.|++......... ......+-.....|++++-.+     +...|+.|+ ...+..||+...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N   83 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN   83 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence            344334 788888889999998652221110 111112222345677776544     345676666 456999998754


Q ss_pred             cccccccCcccCcccceEEEEee-----CCEEEEecCCCcEEEEeccCC
Q 046226          316 SAQLQYGGALQGHTHAVMCLASV-----ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       316 ~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ...+.  +.+.   ..|.++.+-     ..-++..+.+..|.-||.+..
T Consensus        84 ~d~Fy--ke~~---DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   84 SDLFY--KEVP---DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             chhhh--hhCc---cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            43332  2222   344555441     234444555778888887654

>PLN02153 epithiospecifier protein

Probab=87.54  E-value=22  Score=32.23  Aligned_cols=23  Identities=4%  Similarity=0.021  Sum_probs=14.6

Q ss_pred             CCCEEEEEecC-----CcEEEEEcCCCe
Q 046226          205 SDDTLYSASLD-----KTIKVWRIRDSK  227 (434)
Q Consensus       205 ~~~~l~s~~~d-----g~i~vwd~~~~~  227 (434)
                      ++++++.|+.+     ..+.+||..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence            45566666643     357888887653

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=87.40  E-value=20  Score=32.71  Aligned_cols=130  Identities=17%  Similarity=0.187  Sum_probs=67.0

Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-------ecCC
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-------SLDK  216 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-------~~dg  216 (434)
                      .+..-+..+.|-+|+..+.+..........                  ...+.-.-+.|.+...+++..       ..++
T Consensus       237 ~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~------------------dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~  298 (465)
T KOG2714|consen  237 QLVALSSVGKIGVWHAVTQQAQDVQPISSY------------------DSAGSFLKLGWLNGSNLLIDSQKFPLRMKDND  298 (465)
T ss_pred             hhhhccccccccccchhhhceeeeeeccCc------------------cccCChhhhccccCceeEEEEeeccccccCCc
Confidence            444556678899998876633222221111                  122223334444433333322       3467


Q ss_pred             cEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC
Q 046226          217 TIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG  296 (434)
Q Consensus       217 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  296 (434)
                      .|++||.+...            +...|.   .++.++..+.+++-+..............++..|..+..         
T Consensus       299 ~i~~~d~Rd~n------------~~~~W~---~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~---------  354 (465)
T KOG2714|consen  299 LIVTEDFRDRN------------TSGNWI---EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLG---------  354 (465)
T ss_pred             eEEEeeccCCC------------ccceEE---EecCCccccceEeeeccccccCCCCeEEEEEEecCCCcc---------
Confidence            88889887654            112332   355566667777776553333333444455555555421         


Q ss_pred             EEEEEcCCCeEEEEEcCcc
Q 046226          297 LLYGGCTDGYIHYWHKGWF  315 (434)
Q Consensus       297 ~l~~~~~dg~i~i~d~~~~  315 (434)
                      ++=.+...+.+++|.....
T Consensus       355 ~idv~~~~~~~~~~~~tr~  373 (465)
T KOG2714|consen  355 LIDVCSDGGHVRVWNSTRF  373 (465)
T ss_pred             eeehhhhCCcceEEeeccc
Confidence            2223444567889987543

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=87.37  E-value=35  Score=34.59  Aligned_cols=142  Identities=14%  Similarity=0.259  Sum_probs=80.0

Q ss_pred             eCCCeEEEecCCCceeEeeccCCCccEEEEEE---eCC-------EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226          109 SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV---SHD-------RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG  178 (434)
Q Consensus       109 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~---~~~-------~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (434)
                      +.|+.+.+||+.++..-+.+..-...|..+..   .|+       .++..+....+.++-+..++....+.+...   + 
T Consensus        99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnT---g-  174 (1263)
T COG5308          99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNT---G-  174 (1263)
T ss_pred             EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEec---c-
Confidence            35788999999877666555544444555443   222       223333344455554433332222211100   0 


Q ss_pred             ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC--------ee-------------E---EEccc
Q 046226          179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS--------KC-------------I---ETIQA  234 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--------~~-------------~---~~~~~  234 (434)
                          +     ...-..-.|.|+.-+.+|+.+++|-.|  +.+|.+.-.        ++             +   ..+..
T Consensus       175 ----l-----~vsvqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~i  243 (1263)
T COG5308         175 ----L-----VVSVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGI  243 (1263)
T ss_pred             ----e-----EEeccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCC
Confidence                0     000133568888888889999988877  777776310        10             0   11223


Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226          235 HSEPINALVVADDG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       235 ~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~  265 (434)
                      |...|..+++.... .|.+-.....|+-|.+.
T Consensus       244 pgetI~Ql~vDqsRg~ly~Lr~kS~Vray~it  275 (1263)
T COG5308         244 PGETIKQLAVDQSRGLLYVLRKKSAVRAYSIT  275 (1263)
T ss_pred             cccchhheeecccccceeeecccceeeeEeee
Confidence            66778888887655 77777788888888764

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.36  E-value=19  Score=31.45  Aligned_cols=214  Identities=12%  Similarity=0.102  Sum_probs=117.7

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEEcC------CC-eeEEEccc-----CccCeEEEEEcCCC-------------e
Q 046226          195 GPITSIAINVSDDTLYSASLDKTIKVWRIR------DS-KCIETIQA-----HSEPINALVVADDG-------------V  249 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~-------------~  249 (434)
                      ..-+.|+++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+...             .
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            346789999998877777778899999986      12 22333332     12345666665321             4


Q ss_pred             EEEEeCCCeEEEEecccccCcceeEEEEEecccccCe-EEEEEec--CCCEEEEE-cCCCeEEEEEcCccccccc--cc-
Q 046226          250 LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV-KTLTLTL--DDGLLYGG-CTDGYIHYWHKGWFSAQLQ--YG-  322 (434)
Q Consensus       250 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~--~~-  322 (434)
                      ++.+++||+|.-|.............+..-......| ..+++..  .+.+|+.+ -..++|.+||-.-......  +. 
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence            7888999999999753111100011111111112233 3455543  35566555 4589999998542221110  00 


Q ss_pred             CcccCcccceEEEE-eeCCE-------------EEEecCCCcEEEEeccCCCceeeEEEee--ccccceeEEEEeecccC
Q 046226          323 GALQGHTHAVMCLA-SVANY-------------VISGSADSTSRVWAREQDGRHTMLAVLV--GHRGPIRCAIAFLGRFG  386 (434)
Q Consensus       323 ~~~~~~~~~v~~~~-~~~~~-------------l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~  386 (434)
                      ..+...-.+ ..+. ..+++             =+.|..-|.|-+||+..    ..++.+.  +.-..-+.|+..|..++
T Consensus       183 P~iPagyAP-FnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       183 PALPAGYAP-FNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CCCCCCCCC-cceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCcccCCceeeeChhhhC
Confidence            001111011 1111 11222             23344457899999875    4555552  23345567888876543


Q ss_pred             CCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          387 EETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       387 ~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      .   ..+.+|+---.||+|..+|..+++.+
T Consensus       258 ~---~sg~lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       258 S---LSGALLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             C---CCCCeEEeecCCceeEEecCCCCcee
Confidence            2   22567776667999999999888754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=87.12  E-value=24  Score=32.35  Aligned_cols=71  Identities=13%  Similarity=0.091  Sum_probs=35.4

Q ss_pred             CeEEEEEcCCCeEEEEe------------CCC-eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC
Q 046226          238 PINALVVADDGVLYSAS------------DDA-TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD  304 (434)
Q Consensus       238 ~v~~~~~~~~~~l~s~~------------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  304 (434)
                      ....|+|.++|.|+++.            ..+ .|.+++-....+.  ......+.........+++.+++  |++++..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~--~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK--YDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC--cceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            45678888888444443            122 6666643211111  11112222223456788998888  4445544


Q ss_pred             CeEEEEEc
Q 046226          305 GYIHYWHK  312 (434)
Q Consensus       305 g~i~i~d~  312 (434)
                      ...++.|.
T Consensus        91 ~i~~~~d~   98 (367)
T TIGR02604        91 DILFLRDK   98 (367)
T ss_pred             eEEEEeCC
Confidence            43334344

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=87.02  E-value=18  Score=30.85  Aligned_cols=70  Identities=17%  Similarity=0.107  Sum_probs=49.8

Q ss_pred             CcCCCeEEEEEecC-------CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE----Ec-CCCeEEEEeCCCeE
Q 046226          192 KHMGPITSIAINVS-------DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VA-DDGVLYSASDDATV  259 (434)
Q Consensus       192 ~~~~~v~~~~~~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~----~~-~~~~l~s~~~dg~i  259 (434)
                      .+...|+||+--..       -..|+.|+++|.|.|.|-+....+..+....-++ .+.    +. -|.+++.++.||.|
T Consensus       174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~i  252 (257)
T PF14779_consen  174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKI  252 (257)
T ss_pred             ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEE
Confidence            35667888876431       2579999999999999998888777776554444 222    22 23388999999988


Q ss_pred             EEE
Q 046226          260 RVW  262 (434)
Q Consensus       260 ~iw  262 (434)
                      .+.
T Consensus       253 y~i  255 (257)
T PF14779_consen  253 YTI  255 (257)
T ss_pred             EEE
Confidence            764

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.88  E-value=40  Score=34.59  Aligned_cols=68  Identities=13%  Similarity=0.172  Sum_probs=43.4

Q ss_pred             EEEEcCCEEEEEeCCCeEEEecCCCceeEe---e------c--cCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCC
Q 046226           97 CIAVGNGFIYTGSDSNVIRIWKQPEFTECG---R------L--KAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNG  164 (434)
Q Consensus        97 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~---~------~--~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~  164 (434)
                      |++--|+.|+.|+.||.+.+|.+.......   .      +  .-+..+|..+...+. .++..-.|+.|.++++..-+.
T Consensus        21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPELEP  100 (877)
T ss_pred             HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecCcccc
Confidence            555589999999999999999876532111   1      0  012456666665554 444555677788887765443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.45  E-value=22  Score=31.14  Aligned_cols=230  Identities=17%  Similarity=0.171  Sum_probs=111.2

Q ss_pred             EEEEEEeCC--EEEEEEcCCeEEEeecCCCC---CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC---
Q 046226          135 VVAMEVSHD--RVYAAYGDGKIRVWRSTWDN---GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD---  206 (434)
Q Consensus       135 v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---  206 (434)
                      -+.|+++|.  ..++....+...+||.....   ....+.+ .++.....            ......+.+.|+...   
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~v-tiP~~~~~------------~~~~~PTGiVfN~~~~F~   91 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVV-VIPAPPPL------------AAEGTPTGQVFNGSDTFV   91 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEE-EecCCCCC------------CCCCCccEEEEeCCCceE
Confidence            478899986  44445557889999986221   1111111 11110000            122345555555322   


Q ss_pred             ---------CEEEEEecCCcEEEEEcCCCee-----EEEccc-CccCe-EEEEEcCC--C-e-EEEEeCCCeEEEEeccc
Q 046226          207 ---------DTLYSASLDKTIKVWRIRDSKC-----IETIQA-HSEPI-NALVVADD--G-V-LYSASDDATVRVWRRYF  266 (434)
Q Consensus       207 ---------~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~-~~~~v-~~~~~~~~--~-~-l~s~~~dg~i~iwd~~~  266 (434)
                               ..++.+++||+|.-|...-+..     ...+.. ....| ..+++...  + + .++=-..++|.+||-..
T Consensus        92 vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f  171 (336)
T TIGR03118        92 VSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF  171 (336)
T ss_pred             EcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence                     2367788999999998532221     122221 12333 34555432  3 4 44445789999998652


Q ss_pred             ccCcceeEEE-EEecccccC-----------eEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEE
Q 046226          267 YSENQLHTLI-LTLTAKYSP-----------VKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC  334 (434)
Q Consensus       267 ~~~~~~~~~~-~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  334 (434)
                      .......... ..+.....+           |+-..-.++.+.=+.|..-|.|-+||+...-.. .+  .-.+.-..-+.
T Consensus       172 ~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~-r~--as~g~LNaPWG  248 (336)
T TIGR03118       172 RPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLR-RV--ASSGRLNAPWG  248 (336)
T ss_pred             ccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEE-Ee--ccCCcccCCce
Confidence            1100000000 000111111           111111223333334445678999987532111 11  11122223344


Q ss_pred             EE--------eeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccc------cceeEEEEeec
Q 046226          335 LA--------SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR------GPIRCAIAFLG  383 (434)
Q Consensus       335 ~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~------~~v~~~~~~~~  383 (434)
                      |+        +++.+|+---.||+|..||..++   ..+..+..-.      ..++.++|-..
T Consensus       249 ~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG---~~~g~L~~~~G~pi~i~GLWgL~fGng  308 (336)
T TIGR03118       249 LAIAPESFGSLSGALLVGNFGDGTINAYDPQSG---AQLGQLLDPDNHPVKVDGLWSLTFGNG  308 (336)
T ss_pred             eeeChhhhCCCCCCeEEeecCCceeEEecCCCC---ceeeeecCCCCCeEEecCeEEeeeCCC
Confidence            43        34667877778999999999887   4444444332      23566776553

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.26  E-value=26  Score=31.95  Aligned_cols=203  Identities=11%  Similarity=0.149  Sum_probs=0.0

Q ss_pred             ecCCCEEEEEecCCcEEEEEcCCCeeEEEccc----CccCeEEEEEcCCC--eEEEEeCC---CeEEEEecccccCccee
Q 046226          203 NVSDDTLYSASLDKTIKVWRIRDSKCIETIQA----HSEPINALVVADDG--VLYSASDD---ATVRVWRRYFYSENQLH  273 (434)
Q Consensus       203 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~--~l~s~~~d---g~i~iwd~~~~~~~~~~  273 (434)
                      .|...+++....++-+.+||+ .|+.++.+..    .-.-...+.+....  ++++...+   ..|++|.+.  ......
T Consensus        65 dp~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id--~~~g~L  141 (381)
T PF02333_consen   65 DPAKSLIIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID--PDTGEL  141 (381)
T ss_dssp             -GGG-EEEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE--TTTTEE
T ss_pred             CcccceEEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec--CCCCcc


Q ss_pred             EEEEE----ecccccCeEEEEEecCCC----EEEEEcCCCeEEEEEcC---cccccccccCcccCcccceEEEEeeCC-E
Q 046226          274 TLILT----LTAKYSPVKTLTLTLDDG----LLYGGCTDGYIHYWHKG---WFSAQLQYGGALQGHTHAVMCLASVAN-Y  341 (434)
Q Consensus       274 ~~~~~----~~~~~~~v~~~~~~~~~~----~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~-~  341 (434)
                      ..+..    +......+..+|+-.+..    ++++...+|.+..|.+.   ......+....+......=-|+.-+.. +
T Consensus       142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR  221 (381)
T ss_dssp             EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred             eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC


Q ss_pred             EEEecCCCcEEEEecc--CCCceeeEEEeec--cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          342 VISGSADSTSRVWARE--QDGRHTMLAVLVG--HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       342 l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      |+.+-+|.-|.-|+.+  .+.....+....+  ....|-.|++...     ....|.+|+|.=.+++..+|+....
T Consensus       222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~-----~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG-----SDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE------CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec-----CCCCeEEEEEcCCCCeEEEEecCCC

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.81  E-value=8.1  Score=30.93  Aligned_cols=37  Identities=14%  Similarity=0.206  Sum_probs=29.9

Q ss_pred             cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      ..+.+++|||.+.+..   .+.+|++...+|.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~---~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPN---GRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCC---CceEEEEEcCCCeEEEEecCC
Confidence            3788999999764332   377999999999999999764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PLN02193 nitrile-specifier protein

Probab=85.65  E-value=34  Score=32.66  Aligned_cols=64  Identities=5%  Similarity=-0.117  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCCC-----eEEEEEcCcccccccccCc---ccCcccceEEEEeeCCEEEEecCC----CcEEEEeccCC
Q 046226          294 DDGLLYGGCTDG-----YIHYWHKGWFSAQLQYGGA---LQGHTHAVMCLASVANYVISGSAD----STSRVWAREQD  359 (434)
Q Consensus       294 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~  359 (434)
                      ++++++.|+.++     .+..||+.+..  +.....   ..............++.++.++.+    ..+.+||+.+.
T Consensus       278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        278 EENVYVFGGVSATARLKTLDSYNIVDKK--WFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             CCEEEEECCCCCCCCcceEEEEECCCCE--EEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCC
Confidence            456666666543     46677765332  211111   111111122334567777777755    46899999875

>smart00564 PQQ beta-propeller repeat

Probab=85.21  E-value=2.5  Score=22.58  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=22.1

Q ss_pred             CCEEEEEecCCcEEEEEcCCCeeEEEc
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKCIETI  232 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~  232 (434)
                      +..++.++.+|.+..+|.++|+.+..+
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            346788888999999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.57  E-value=27  Score=30.53  Aligned_cols=116  Identities=12%  Similarity=0.094  Sum_probs=62.5

Q ss_pred             CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc------CCCeEEEEEcCcccccccccCc-c-cCc
Q 046226          257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC------TDGYIHYWHKGWFSAQLQYGGA-L-QGH  328 (434)
Q Consensus       257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-~-~~~  328 (434)
                      ..|++||..      ..+....-.+-.+.|+.+.|..+.++++.|.      ....+..||+....  +..... . ..-
T Consensus        16 ~~lC~yd~~------~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~i   87 (281)
T PF12768_consen   16 PGLCLYDTD------NSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSI   87 (281)
T ss_pred             CEEEEEECC------CCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccC
Confidence            468999976      2223333333567899999987767777664      45678889876432  211111 0 112


Q ss_pred             ccceEEEEe---eCC-EEEEec-CCC--cEEEEeccCCCceeeEEE-eeccccceeEEEEeec
Q 046226          329 THAVMCLAS---VAN-YVISGS-ADS--TSRVWAREQDGRHTMLAV-LVGHRGPIRCAIAFLG  383 (434)
Q Consensus       329 ~~~v~~~~~---~~~-~l~s~~-~dg--~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~  383 (434)
                      .++|..+.+   ++. +.+.|. .+|  .|..||-.   .+..+.. .......|..+.+.|-
T Consensus        88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs---~W~~i~~~~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS---SWSSIGSDILGSGTTIRGLQVLPL  147 (281)
T ss_pred             CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC---ceEeccccccCCCCEEEEEEEEec
Confidence            356666666   333 444443 344  45556432   3344433 2233456666666654

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=84.41  E-value=39  Score=32.33  Aligned_cols=148  Identities=15%  Similarity=0.219  Sum_probs=81.6

Q ss_pred             ccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCC-ccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCcee
Q 046226           91 KDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT-SMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        91 h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      -..+|.++.+ -.+.+..|+.|| +..||..+++.+..-.... .+|..+..+-. .+.+|+.+| |.+.+.+.......
T Consensus       163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~  240 (671)
T COG3292         163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNW  240 (671)
T ss_pred             cCccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcccccc
Confidence            4567888888 456788888887 4466777777666544333 55666555444 788888777 66665443110000


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-eEEEcccC--ccCeEEEEE
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-CIETIQAH--SEPINALVV  244 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~--~~~v~~~~~  244 (434)
                      .         .            .-..+.|..+.-.. ...+-.|+++|..+. ...... .....+.|  ...|.++..
T Consensus       241 ~---------~------------~lp~~~I~ll~qD~-qG~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~  297 (671)
T COG3292         241 G---------P------------MLPSGNILLLVQDA-QGELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWL  297 (671)
T ss_pred             C---------C------------CCcchheeeeeccc-CCCEEEeecccceeE-ecCCCCccccccccCCccccccceee
Confidence            0         0            00122233333222 335666776664432 222222 11112222  345677777


Q ss_pred             cCCCeEEEEeCCCeEEEEe
Q 046226          245 ADDGVLYSASDDATVRVWR  263 (434)
Q Consensus       245 ~~~~~l~s~~~dg~i~iwd  263 (434)
                      ..+|-+.+++.+|.+++-+
T Consensus       298 D~dGsLWv~t~~giv~~~~  316 (671)
T COG3292         298 DTDGSLWVGTYGGIVRYLT  316 (671)
T ss_pred             ccCCCEeeeccCceEEEec
Confidence            7778888898888887654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.31  E-value=22  Score=29.34  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=41.9

Q ss_pred             EEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC---C---eEEEE
Q 046226          240 NALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD---G---YIHYW  310 (434)
Q Consensus       240 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~i~  310 (434)
                      ..++..+.+.|+.+...+.|.+|++.    .........+..- +.|..+.++..|++|++--.+   .   .+++|
T Consensus        21 ~~~c~~g~d~Lfva~~g~~Vev~~l~----~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   21 TAVCCGGPDALFVAASGCKVEVYDLE----QEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceeeccCCceEEEEcCCCEEEEEEcc----cCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            34444553444444667789999987    1222333344433 788999999999999986432   2   56665

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=83.95  E-value=49  Score=33.34  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=25.0

Q ss_pred             ccEEEEEEeCCEEEEEEcCCeEEEeecCCCCC
Q 046226          133 SMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNG  164 (434)
Q Consensus       133 ~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~  164 (434)
                      ..|.+++.+.+.-++-+.+|.|.-|-++....
T Consensus       229 h~~~qisvs~~HslvLT~~g~Vys~GlN~~hq  260 (1267)
T KOG0783|consen  229 HKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQ  260 (1267)
T ss_pred             cceEEEEeecceeEEEeecceEEEeecCcccc
Confidence            35788888888777778899999998765443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=83.79  E-value=37  Score=31.60  Aligned_cols=144  Identities=13%  Similarity=0.163  Sum_probs=82.6

Q ss_pred             CEEEEEEcCCeEEEeecCCCCCc-eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-----CCCEEEEEecCC
Q 046226          143 DRVYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-----SDDTLYSASLDK  216 (434)
Q Consensus       143 ~~l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg  216 (434)
                      +.+++|+..|.++||+....... ...-+.                   ..-..+|..+..-.     +...|++ -.-.
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE-------------------~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~   97 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLE-------------------TQLKDPILQVECGKFVSGSEDLQLAV-LHPR   97 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEE-------------------EecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence            48999999999999997543311 111110                   02445666666532     1223333 4456


Q ss_pred             cEEEEEcCC--Ce-------eEEEcccCc--cCeEEEEEcC----CC--eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226          217 TIKVWRIRD--SK-------CIETIQAHS--EPINALVVAD----DG--VLYSASDDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       217 ~i~vwd~~~--~~-------~~~~~~~~~--~~v~~~~~~~----~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      .+.+|.+..  |.       .+..+..|.  .....+++-+    .+  ++..-+.||.+.+|+-+      .......+
T Consensus        98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe------~~~f~~~l  171 (418)
T PF14727_consen   98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE------SFAFSRFL  171 (418)
T ss_pred             EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC------cEEEEEEc
Confidence            677777621  11       122222232  1222333322    22  78889999999999754      22222222


Q ss_pred             cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          280 TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      .. .--...++|.+.-..|++++.+..+..|...
T Consensus       172 p~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  172 PD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence            22 2334457888888999999999999999753

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=83.77  E-value=43  Score=32.31  Aligned_cols=231  Identities=14%  Similarity=0.134  Sum_probs=113.1

Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc-CCCeEEEEEecCC-CEEEEEec--CCcEE
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH-MGPITSIAINVSD-DTLYSASL--DKTIK  219 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-~~l~s~~~--dg~i~  219 (434)
                      .++.+..+|.+....+.....  .+.+..                  .+. .....++.+..++ .+|+.|+.  |+.+.
T Consensus       224 ~~lL~~e~G~l~~l~l~~~~~--~i~i~~------------------~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~  283 (504)
T PF10433_consen  224 RILLQDEDGDLYLLTLDNDGG--SISITY------------------LGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLL  283 (504)
T ss_dssp             EEEEEETTSEEEEEEEEEEEE--EEEEEE------------------EEE--S-ESEEEEESTT--EEEEEESSS-EEEE
T ss_pred             EEEEEeCCCeEEEEEEEECCC--eEEEEE------------------cCCcCChhheEEEEcCCCEEEEEEEecCCcEEE
Confidence            788899999998887754332  111100                  022 4455666666554 36777765  45566


Q ss_pred             EEEcCCCeeEEEcccCccCeEEEEEcCC-----C------eEEEEe---CCCeEEEEecccccCcceeEEEEEeccc--c
Q 046226          220 VWRIRDSKCIETIQAHSEPINALVVADD-----G------VLYSAS---DDATVRVWRRYFYSENQLHTLILTLTAK--Y  283 (434)
Q Consensus       220 vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~------~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~  283 (434)
                      .|....-+.+..+. .-++|.++++.+.     .      .+++++   .+|.+++..--    -............  -
T Consensus       284 ~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G----i~~~~~~~~~~~l~~v  358 (504)
T PF10433_consen  284 QISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG----IGIEGLELASSELPGV  358 (504)
T ss_dssp             EEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES----BEEE--EEEEEEESTE
T ss_pred             EEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc----CCceeeeeeccCCCCc
Confidence            66654455555555 4568888888532     1      345553   56889887421    1111011111111  2


Q ss_pred             cCeEEEEEec-CCCEEEEEcCCCeEEEEEcCc--ccccc-cc-cCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226          284 SPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGW--FSAQL-QY-GGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       284 ~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~--~~~~~-~~-~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      ..+..+.... ++.+|+.+..+. -+++.+..  ..... +. ...+......+.+-...++.++=.... .|++.+...
T Consensus       359 ~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~  436 (504)
T PF10433_consen  359 TGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLED  436 (504)
T ss_dssp             EEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSS
T ss_pred             eEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCC
Confidence            2333443322 245666666544 44555531  11111 11 002223334454444546666666644 488888766


Q ss_pred             CCceeeEEEeec-cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          359 DGRHTMLAVLVG-HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       359 ~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      .   +....+.. ....|.+.+..           +.+++.+-.++.+..+.+.....
T Consensus       437 ~---~~~~~w~~~~~~~I~~a~~~-----------~~~v~v~~~~~~~~~~~~~~~~~  480 (504)
T PF10433_consen  437 G---KLTQEWKPPAGSIIVAASIN-----------DPQVLVALSGGELVYFELDDNKI  480 (504)
T ss_dssp             T---SEEEEEE-TTS---SEEEES-----------SSEEEEEE-TTEEEEEEEETTEE
T ss_pred             C---eEEEEEeCCCCCeEEEEEEC-----------CCEEEEEEeCCcEEEEEEECCce
Confidence            5   34433322 34456656555           34677777789999999887654

...

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.46  E-value=23  Score=29.01  Aligned_cols=105  Identities=11%  Similarity=0.017  Sum_probs=59.4

Q ss_pred             EEE-cCCEEEEEeCC--CeEEEecCCCceeEeeccCCCccE--EEEEEeCCEEEEEE-cCCeEEEeecCCCCCceeeEee
Q 046226           98 IAV-GNGFIYTGSDS--NVIRIWKQPEFTECGRLKAKTSMV--VAMEVSHDRVYAAY-GDGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus        98 ~~~-~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~~~~~~v--~~l~~~~~~l~~~s-~dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      +.+ +|.++.+.+.-  ..|++||+.+++.+..-+-....+  ..+.-..+.++.-. .+|.-..+|.++-+.+..+.  
T Consensus        51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~--  128 (262)
T COG3823          51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS--  128 (262)
T ss_pred             eeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc--
Confidence            444 56666665543  489999999988877644332222  12223344444333 47778888887666555542  


Q ss_pred             eccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe
Q 046226          172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK  227 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  227 (434)
                                           ..+.=+.++  .|+..|..+....+++.-|.++..
T Consensus       129 ---------------------y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         129 ---------------------YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             ---------------------cCCcceeee--cCCcceEeeCCceEEEecCHHHhh
Confidence                                 223333443  345556666555667777766543

>PF01011 PQQ: PQQ enzyme repeat family

Probab=83.17  E-value=3.1  Score=23.33  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=23.1

Q ss_pred             EEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226          208 TLYSASLDKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       208 ~l~s~~~dg~i~vwd~~~~~~~~~~~~  234 (434)
                      .++.++.+|.|.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            456678999999999999999988764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>smart00564 PQQ beta-propeller repeat

Probab=83.11  E-value=3.5  Score=21.94  Aligned_cols=27  Identities=15%  Similarity=0.162  Sum_probs=21.2

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEee
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGR  127 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~  127 (434)
                      .+..+++++.+|.+..+|..+++.+..
T Consensus         5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        5 SDGTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             ECCEEEEEcCCCEEEEEEcccCcEEEE
Confidence            344678888899999999988887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=82.62  E-value=49  Score=32.04  Aligned_cols=182  Identities=13%  Similarity=0.045  Sum_probs=0.0

Q ss_pred             cCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEE
Q 046226          214 LDKTIKVWRIRDSKCIETIQA--HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLT  290 (434)
Q Consensus       214 ~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  290 (434)
                      ..+.|.+.| ...+.+..+.+  ....|.++.|-.+. +++|--.---+.+.|+.      .......+..-+-+-.+=-
T Consensus       302 s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLs------dP~~P~vlGeLKIPGfS~Y  374 (521)
T PF09826_consen  302 SSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLS------DPANPKVLGELKIPGFSDY  374 (521)
T ss_pred             ceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECC------CCCCCceeeEEECccchhc


Q ss_pred             Eec--CCCEEEEEcCCCe-----------EEEEEcCcccccccccCcccCcccceEEEEee--------CCEEEEecCC-
Q 046226          291 LTL--DDGLLYGGCTDGY-----------IHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--------ANYVISGSAD-  348 (434)
Q Consensus       291 ~~~--~~~~l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~l~s~~~d-  348 (434)
                      ++|  ++.+|-.|-....           |.+||+.....+.+.....-+....-..+..+        .+-++.-=-. 
T Consensus       375 LHP~~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~  454 (521)
T PF09826_consen  375 LHPYDENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSS  454 (521)
T ss_pred             eeECCCCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEE


Q ss_pred             -------CcEEEEeccCCCceeeEEEeeccccc------eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          349 -------STSRVWAREQDGRHTMLAVLVGHRGP------IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       349 -------g~i~iwd~~~~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                             ..++++++...........+......      +....+.           +..|.+.+ ++.|+.+++++-+
T Consensus       455 ~~~~~~~~g~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R~lyi-----------~d~lYtvS-~~~i~~~~l~t~~  521 (521)
T PF09826_consen  455 SYGYFNFQGAYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQRSLYI-----------GDTLYTVS-DNGIKAYDLNTLE  521 (521)
T ss_pred             ccCccccceEEEEEEeCCCCeEEEEEEEccCcccccccceeEEEEE-----------CCEEEEEE-CCEEEEEehHhcC

>KOG2006 consensus WD40 repeat protein [General function prediction only]

Probab=82.45  E-value=11  Score=38.26  Aligned_cols=68  Identities=9%  Similarity=0.038  Sum_probs=43.7

Q ss_pred             EEEEEEcCCEEEEEeCCCeEEEecCCCc--eeEee---ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCC
Q 046226           95 ILCIAVGNGFIYTGSDSNVIRIWKQPEF--TECGR---LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWD  162 (434)
Q Consensus        95 v~~~~~~~~~l~tg~~dg~i~iwd~~~~--~~~~~---~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~  162 (434)
                      +.++......+++|..-|.+.+++....  .....   ...+...+.-+.|.|+  .++.+-..|...+|.....
T Consensus       153 c~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~  227 (1023)
T KOG2006|consen  153 CCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGN  227 (1023)
T ss_pred             eeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEeccccc
Confidence            3334448899999999999999987542  22221   1223346666777776  5555666788888875443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=82.26  E-value=37  Score=30.43  Aligned_cols=24  Identities=0%  Similarity=-0.024  Sum_probs=15.4

Q ss_pred             cCCCEEEEEecCC----cEEEEEcCCCe
Q 046226          204 VSDDTLYSASLDK----TIKVWRIRDSK  227 (434)
Q Consensus       204 ~~~~~l~s~~~dg----~i~vwd~~~~~  227 (434)
                      .++++.+.|+.++    .+.+||.++.+
T Consensus       170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       170 LQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             ECCEEEEEcCCCCccccceEEEecCCCe
Confidence            3566777776653    35688887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.88  E-value=16  Score=29.22  Aligned_cols=31  Identities=13%  Similarity=0.072  Sum_probs=25.1

Q ss_pred             CCeEEEEEecCC------CEEEEEecCCcEEEEEcCC
Q 046226          195 GPITSIAINVSD------DTLYSASLDKTIKVWRIRD  225 (434)
Q Consensus       195 ~~v~~~~~~~~~------~~l~s~~~dg~i~vwd~~~  225 (434)
                      ..|..++|+|.|      -+|++.+.+|.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999953      4688889999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=81.57  E-value=45  Score=30.94  Aligned_cols=289  Identities=10%  Similarity=0.005  Sum_probs=135.0

Q ss_pred             cccceeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecC--CCceeEeeccC-----CCccEEEEEEeCCEEEE
Q 046226           78 TSSSYRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQ--PEFTECGRLKA-----KTSMVVAMEVSHDRVYA  147 (434)
Q Consensus        78 ~~~~~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~--~~~~~~~~~~~-----~~~~v~~l~~~~~~l~~  147 (434)
                      .-++|+.+..-......+++|.|   +.+.-+..+.+|.|.-=+-  ++.+... ...     -.....++.|..+..++
T Consensus        73 ~G~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G~IL~T~DGG~tW~~~~-~~~~~~~~~~~~l~~v~f~~~~g~~  151 (398)
T PLN00033         73 QSSEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRS-IPSAEDEDFNYRFNSISFKGKEGWI  151 (398)
T ss_pred             CCCccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCCEEEEEcCCCCCceECc-cCcccccccccceeeeEEECCEEEE
Confidence            45678887766666778999999   4445555555665543210  1122211 110     01235777777666666


Q ss_pred             EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe
Q 046226          148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK  227 (434)
Q Consensus       148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  227 (434)
                      ++..|.|..- .+.++.-.......                   ........+....++...+++ ..|.|..-+ +.|+
T Consensus       152 vG~~G~il~T-~DgG~tW~~~~~~~-------------------~~p~~~~~i~~~~~~~~~ivg-~~G~v~~S~-D~G~  209 (398)
T PLN00033        152 IGKPAILLHT-SDGGETWERIPLSP-------------------KLPGEPVLIKATGPKSAEMVT-DEGAIYVTS-NAGR  209 (398)
T ss_pred             EcCceEEEEE-cCCCCCceECcccc-------------------CCCCCceEEEEECCCceEEEe-ccceEEEEC-CCCC
Confidence            6666643322 22222222211100                   001111223333333333333 566655443 2222


Q ss_pred             eEEEc---------c-----------cCccCeEEEEEcCCCeEEEEeCCCeEE-EEecccccCcceeEEEEEecccccCe
Q 046226          228 CIETI---------Q-----------AHSEPINALVVADDGVLYSASDDATVR-VWRRYFYSENQLHTLILTLTAKYSPV  286 (434)
Q Consensus       228 ~~~~~---------~-----------~~~~~v~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v  286 (434)
                      .-...         .           ...+....+...+++.++..+..|.+. -||--    .......  .......+
T Consensus       210 tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G----~~~W~~~--~~~~~~~l  283 (398)
T PLN00033        210 NWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRGNFYLTWEPG----QPYWQPH--NRASARRI  283 (398)
T ss_pred             CceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCccEEEecCCC----CcceEEe--cCCCccce
Confidence            21111         0           001223345556677444444545433 34311    1111211  12234568


Q ss_pred             EEEEEecCCCEEEEEcCCCeEEEEEcCcccccc--cccC-cccCcccceEEEEee-CCEEEEecCCCcEEEEeccCCCce
Q 046226          287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL--QYGG-ALQGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRH  362 (434)
Q Consensus       287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~  362 (434)
                      ..+.+.+++..++++ .+|.+..-+ .......  .+.. ........+..+.+. .+.++.++.+|.+.... ..++.+
T Consensus       284 ~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW  360 (398)
T PLN00033        284 QNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSW  360 (398)
T ss_pred             eeeeEcCCCCEEEEe-CCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcce
Confidence            889999998887766 456554432 1111000  1110 011112346777764 44666677788776664 444443


Q ss_pred             eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226          363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw  408 (434)
                      +....-..-....+.+.|.++         + .....+.+|.|.-|
T Consensus       361 ~~~~~~~~~~~~ly~v~f~~~---------~-~g~~~G~~G~il~~  396 (398)
T PLN00033        361 KRDKGADNIAANLYSVKFFDD---------K-KGFVLGNDGVLLRY  396 (398)
T ss_pred             eEccccCCCCcceeEEEEcCC---------C-ceEEEeCCcEEEEe
Confidence            443322233456788888765         3 35555678887655

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=80.70  E-value=11  Score=34.73  Aligned_cols=161  Identities=12%  Similarity=0.143  Sum_probs=88.9

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE-EEcccC-cc----CeE-EEEEcCCC-eEEEEeCCCeEEEE-e
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI-ETIQAH-SE----PIN-ALVVADDG-VLYSASDDATVRVW-R  263 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~-~~----~v~-~~~~~~~~-~l~s~~~dg~i~iw-d  263 (434)
                      -...|..+-..||++.++.-+. .++.++++.+.... +++-.. .+    .|+ .+..-..+ -++.+..||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            4456777888999999988775 67889988654321 111111 11    122 12222344 68888899998887 4


Q ss_pred             cccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226          264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI  343 (434)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  343 (434)
                      .+.... .....+..+.-...++..+.-..+.+-+++-+..|++.++.-...... -. ... .....+..++..+++++
T Consensus       298 vr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~-~~~-~~~~~~~~~Sp~~~~Ll  373 (733)
T COG4590         298 VRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LF-ERA-YQAPQLVAMSPNQAYLL  373 (733)
T ss_pred             eecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-eh-hhh-hcCcceeeeCcccchhe
Confidence            442111 112222222222233433433334556777788888888764322111 11 111 12234556666777877


Q ss_pred             EecCCCcEEEEeccCC
Q 046226          344 SGSADSTSRVWAREQD  359 (434)
Q Consensus       344 s~~~dg~i~iwd~~~~  359 (434)
                      +-. .|.++++.+++.
T Consensus       374 ~e~-~gki~~~~l~Nr  388 (733)
T COG4590         374 SED-QGKIRLAQLENR  388 (733)
T ss_pred             eec-CCceEEEEecCC
Confidence            653 578999998875

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=80.26  E-value=21  Score=30.47  Aligned_cols=68  Identities=26%  Similarity=0.354  Sum_probs=49.9

Q ss_pred             eccccEEEEEE------c---CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEE---EEe-CC-EEEEEEcCCeEE
Q 046226           90 KKDGQILCIAV------G---NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAM---EVS-HD-RVYAAYGDGKIR  155 (434)
Q Consensus        90 ~h~~~v~~~~~------~---~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l---~~~-~~-~l~~~s~dg~i~  155 (434)
                      .+...|+||+-      +   -..|+.|..+|.|.|.|.+....+..++-..-++.-.   .|. -| ++++++.||.|.
T Consensus       174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy  253 (257)
T PF14779_consen  174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIY  253 (257)
T ss_pred             ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEE
Confidence            35678899887      1   2479999999999999998888777776554444211   233 34 789999999987


Q ss_pred             Ee
Q 046226          156 VW  157 (434)
Q Consensus       156 vw  157 (434)
                      +.
T Consensus       254 ~i  255 (257)
T PF14779_consen  254 TI  255 (257)
T ss_pred             EE
Confidence            64

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=80.10  E-value=23  Score=26.71  Aligned_cols=105  Identities=9%  Similarity=0.089  Sum_probs=62.8

Q ss_pred             CCEEEEEeCCCeEEEecCCCce--------eEeeccCCCccEEEEEEeC-------CEEEEEEcCCeEEEeecCCCCCce
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFT--------ECGRLKAKTSMVVAMEVSH-------DRVYAAYGDGKIRVWRSTWDNGVK  166 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~l~~~~-------~~l~~~s~dg~i~vwd~~~~~~~~  166 (434)
                      ...|+.++..|.|.|++.....        .+..+. -...|++|+-.+       |.|+.|+ ...+..||+..+..+.
T Consensus        10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~F   87 (136)
T PF14781_consen   10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLF   87 (136)
T ss_pred             ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhh
Confidence            3467888888999999865322        222222 234566665432       2555555 5568999998765544


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec----CCCEEEEEecCCcEEEEEcCCCeeEEEc
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV----SDDTLYSASLDKTIKVWRIRDSKCIETI  232 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~  232 (434)
                      ..                       .-.+.|+++.+-.    +..++++|+ +..|.-+|.+..+..++.
T Consensus        88 yk-----------------------e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   88 YK-----------------------EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             hh-----------------------hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence            33                       2445677776642    234555554 677888887665555443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.05  E-value=36  Score=35.89  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=21.6

Q ss_pred             ecCCCEEEEEcCCCeEEEEEcCcc
Q 046226          292 TLDDGLLYGGCTDGYIHYWHKGWF  315 (434)
Q Consensus       292 ~~~~~~l~~~~~dg~i~i~d~~~~  315 (434)
                      ..++..++++..||.+..||....
T Consensus       243 ~~~~~~~v~~h~Dgs~~fWd~s~g  266 (993)
T KOG1983|consen  243 SRDGSHFVSYHTDGSYAFWDVSSG  266 (993)
T ss_pred             ccCCceEEEEEecCCEEeeecCCC
Confidence            678999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	434
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-12
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-10
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-06
2h9l_A	329	Wdr5delta23 Length = 329		2e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		6e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		6e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		6e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 29/223 (13%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG- 248
           +  H   +  +A +    T+ SAS DKT+K+W  R+ + ++T+  HS  +N +    DG 
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQ 275
Query: 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIH 308
            + SASDD TV++W R          L+ TLT   S V                    + 
Sbjct: 276 TIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328
Query: 309 YWHKGWFSAQLQYGGALQGHTHAV--MCLASVANYVISGSADSTSRVWAREQDGRHTMLA 366
            W++       Q+   L GH+ +V  +  +     + S S D T ++W R       +L 
Sbjct: 329 LWNR-----NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQ 379
Query: 367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR 409
            L GH   +R  +AF          +  TI + S D  +K+W 
Sbjct: 380 TLTGHSSSVR-GVAF--------SPDGQTIASASDDKTVKLWN 413

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 123/315 (39%), Gaps = 58/315 (18%)
Query: 103 GFIYTGSDSNVIRI------WKQPEFTECGRLKAKTSMVV-AMEVSHDRVYAAYGDGKIR 155
           GFI++   S  IR       W++ E      LK     V+  ++   +R+ +   D  ++
Sbjct: 83  GFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLK 142
Query: 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD 215
           VW +                TG  +R L+        H G + S  +   D+ + S S D
Sbjct: 143 VWSAV---------------TGKCLRTLV-------GHTGGVWSSQMR--DNIIISGSTD 178
Query: 216 KTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTL 275
           +T+KVW     +CI T+  H+  +  + + +  V+ S S DAT+RVW     +   LH L
Sbjct: 179 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV-SGSRDATLRVWD--IETGQCLHVL 235
Query: 276 ILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGWFSAQLQYGGALQGHTHAVMCL 335
           +  + A                           +  K W          LQGHT+ V  L
Sbjct: 236 MGHVAA----------VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 336 ASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT 395
                +V+SGS D++ RVW  E       +  L GH+             G E +D    
Sbjct: 286 QFDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTS---------GMELKDNI-- 331
Query: 396 ICTGSLDGVLKMWRV 410
           + +G+ D  +K+W +
Sbjct: 332 LVSGNADSTVKIWDI 346

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 325 LQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGR 384
           L GHT  V C+      V+SGS D+T RVW  E       L VL+GH   +RC + + GR
Sbjct: 195 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG---QCLHVLMGHVAAVRC-VQYDGR 250
Query: 385 FGEETEDEYCTICTGSLDGVLKMWRVTRPKS-SCGHLNKTNGHEYFELQ 432
                      + +G+ D ++K+W    P++ +C H  + + +  + LQ
Sbjct: 251 ----------RVVSGAYDFMVKVW---DPETETCLHTLQGHTNRVYSLQ 286

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 29/243 (11%)
Query: 181 RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN 240
           +N +  K  +  H G +  + +   +  + + S D T++VW +   + + T+  H E + 
Sbjct: 160 KNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217
Query: 241 ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXX 300
            L   ++G++ + S D ++ VW     ++  L  +++   A  + V              
Sbjct: 218 HLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR 276
Query: 301 XXXXXXIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDG 360
                      K W ++  ++   L GH   + CL      V+SGS+D+T R+W  E   
Sbjct: 277 TI---------KVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 327
Query: 361 RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT---RPKSSC 417
               L VL GH   +RC      RF  +       I +G+ DG +K+W +     P++  
Sbjct: 328 ---CLRVLEGHEELVRCI-----RFDNK------RIVSGAYDGKIKVWDLVAALDPRAPA 373
Query: 418 GHL 420
           G L
Sbjct: 374 GTL 376

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV 249
           M  H   ++S++I  + D + SAS DKTIK+W ++   C++T   H E +  +    DG 
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 250 LY-SASDDATVRVW 262
           L  S S+D TVRVW
Sbjct: 248 LIASCSNDQTVRVW 261

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 101/262 (38%), Gaps = 53/262 (20%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV-LY 251
           H   +  I+ + S   L S S D TIK+W  +  +CI T+  H   ++++ +  +G  + 
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
           SAS D T+++W      E Q    + T T     V+                   +    
Sbjct: 209 SASRDKTIKMW------EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV---- 258
Query: 312 KGWFSAQLQYGGALQGHTHAVMCL--------ASVAN--------------YVISGSADS 349
           + W  A  +    L+ H H V C+        +S++               +++SGS D 
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 350 TSRVWAREQDGRHTM-LAVLVGHRGPIRCAIAFL-GRFGEETEDEYCTICTGSLDGVLKM 407
           T ++W    D    M L  LVGH   +R  +    G+F          I + + D  L++
Sbjct: 319 TIKMW----DVSTGMCLMTLVGHDNWVRGVLFHSGGKF----------ILSCADDKTLRV 364
Query: 408 WRVTRPKSSCGHLNKTNGHEYF 429
           W     +     +   N HE+F
Sbjct: 365 WDYKNKRC----MKTLNAHEHF 382

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + A+  D  I++W +    ++  +   KL       
Sbjct: 19  KFTLAGHTKAVSS--VKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 22  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W     S   L TLI
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 194

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 33  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 91  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 15  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 73  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W     S   L TLI
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 187

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 22  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W     S   L TLI
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 194

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 40  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 98  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W     S   L TLI
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 212

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 17  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 75  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W     S   L TLI
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 189

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 19  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 38  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 96  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 16  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 22  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 80  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W     S   L TLI
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 194

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 21  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 79  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W     S   L TLI
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 193

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 19  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 77  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 16  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 74  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
           +FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL       
Sbjct: 12  KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
            +  NL+V    DK +K               H   +     N   + + S S D+++++
Sbjct: 70  SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
           W ++  KC++T+ AHS+P++A+    DG ++ S+S D   R+W
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 122 FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTGG 178
           FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL        
Sbjct: 20  FTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 179 AVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKVW 221
           +  NL+V    DK +K               H   +     N   + + S S D+++++W
Sbjct: 78  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 222 RIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
            ++   C++T+ AHS+P++A+    DG ++ S+S D   R+W     S   L TLI
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 191

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY- 251
           H G + S+++        S + D + K+W +R+  C +T   H   INA+    +G  + 
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
           + SDDAT R++     ++ +L      +T  +  +                      +  
Sbjct: 243 TGSDDATCRLFD--LRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVW 354
             W + +    G L GH + V CL    +   V +GS DS  ++W
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY- 251
           H G + S+++        S + D + K+W +R+  C +T   H   INA+    +G  + 
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
           + SDDAT R++     ++ +L      +T  +  +                      +  
Sbjct: 254 TGSDDATCRLFD--LRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 305
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVW 354
             W + +    G L GH + V CL    +   V +GS DS  ++W
Sbjct: 306 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY- 251
           H G + S+++        S + D + K+W +R+  C +T   H   INA+    +G  + 
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
           + SDDAT R++     ++ +L      +T  +  +                      +  
Sbjct: 243 TGSDDATCRLFD--LRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVW 354
             W + +    G L GH + V CL    +   V +GS DS  ++W
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY- 251
           H G + S+++        S + D + K+W +R+  C +T   H   INA+    +G  + 
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
           + SDDAT R++     ++ +L      +T  +  +                      +  
Sbjct: 243 TGSDDATCRLFD--LRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVW 354
             W + +    G L GH + V CL    +   V +GS DS  ++W
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY- 251
           H G + S+++        S + D + K+W +R+  C +T   H   INA+    +G  + 
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
           + SDDAT R++     ++ +L      +T  +  +                      +  
Sbjct: 243 TGSDDATCRLFD--LRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVW 354
             W + +    G L GH + V CL    +   V +GS DS  ++W
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 122 FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTGG 178
           FT  G  KA +S  V    + + + ++  D  I++W +    ++  +   KL        
Sbjct: 20  FTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 179 AVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKVW 221
           +  NL+V    DK +K               H   +     N   + + S S D+++++W
Sbjct: 78  SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 222 RIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
            ++   C++T+ AHS+P++A+    DG ++ S+S D   R+W     S   L TLI
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 191

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADD 247
           +  H   +  +  + S + L SAS D T+K++R  +    C  T++ H   + +L     
Sbjct: 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 205
Query: 248 GV-LYSASDDATVRVWRRYFYSENQ 271
           G  L S SDD TVR+WR+Y     Q
Sbjct: 206 GQRLASCSDDRTVRIWRQYLPGNEQ 230

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 29/178 (16%)
Query: 88  VLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RV 145
           VL  DGQ         F  +GS    +R+W         R    T  V+++  S D  ++
Sbjct: 437 VLSSDGQ---------FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 146 YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205
            +A  D  I++W     N +   K  TI + G   R+ +                + N  
Sbjct: 488 VSASRDRTIKLW-----NTLGECKY-TISEGGEGHRDWV-----------SCVRFSPNTL 530
Query: 206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVL-YSASDDATVRVW 262
             T+ SAS DKT+KVW + + K   T+  H+  ++ + V+ DG L  S   D  V +W
Sbjct: 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 48/251 (19%)
Query: 184 IVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRI-RDSKCIETIQ----AHSE 237
           +V K  M  H   +T+IA  + + D + SAS DK+I +W++ +D K     Q     HS 
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 238 PINALVVADDGVL-YSASDDATVRVW--------RRYFYSENQLHTLILTLTAKYSPVKX 288
            +  +V++ DG    S S D  +R+W        RR+      + ++  +L  +      
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR------ 485
Query: 289 XXXXXXXXXXXXXXXXXXIHYWHK-GWFSAQLQYGGALQGHTHAVMCLASVAN----YVI 343
                             I  W+  G     +  GG  +GH   V C+    N     ++
Sbjct: 486 --------QIVSASRDRTIKLWNTLGECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIV 535
Query: 344 SGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG 403
           S S D T +VW         + + L GH G       ++       +   C   +G  DG
Sbjct: 536 SASWDKTVKVWNLSN---CKLRSTLAGHTG-------YVSTVAVSPDGSLC--ASGGKDG 583
Query: 404 VLKMWRVTRPK 414
           V+ +W +   K
Sbjct: 584 VVLLWDLAEGK 594

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 89/237 (37%), Gaps = 22/237 (9%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV 249
           +  H   I S+    S D L S S D+T+++W +R  +C  T+          V   DG 
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 250 LYSA-SDDATVRVWRRY--FYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXX 306
             +A S D  VRVW     F  E +L +   + T     V                    
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVE-RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 307 IHYWH----KGWFSAQLQYGGALQ----GHTHAVMCLASVAN--YVISGSADSTSRVWAR 356
           +  W+         ++    G  +    GH   V+ +A+  N  Y++SGS D     W +
Sbjct: 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
Query: 357 EQDGRHTMLAVLVGHRGP-IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412
           +       L +L GHR   I  A+A     G     EY    TGS D   ++W+  +
Sbjct: 340 KS---GNPLLMLQGHRNSVISVAVANGSSLGP----EYNVFATGSGDCKARIWKYKK 389

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI-NALVVADD 247
           K++ H GPI+ +  N ++  L SAS D T+++W   +         HS+ I +A  V DD
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301
Query: 248 GVLYSASDDATVRVW 262
            V+ S S D +VR+W
Sbjct: 302 KVI-SCSMDGSVRLW 315

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 92/242 (38%), Gaps = 51/242 (21%)
Query: 195 GPITSI--AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS 252
           G +TS+   +   D+ + + + DK I+V+   + K +  +  H   + AL  A  G+L S
Sbjct: 119 GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 253 ASDDATVRVWR-------RYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXX 305
            S D TVRVW          F   N   T+      +Y  +K                  
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNS--TVRCLDIVEYKNIK---------YIVTGSRDN 227
Query: 306 XIHYWHKGWFSAQLQYG-------------------GALQGHTHAVMCLASVANYVISGS 346
            +H W     S+   +G                   G L+GH  +V  ++   N V+SGS
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287
Query: 347 ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK 406
            D+T  VW   Q      L +L GH   I   I        + E + C   + S+D  ++
Sbjct: 288 YDNTLIVWDVAQ---MKCLYILSGHTDRIYSTIY-------DHERKRC--ISASMDTTIR 335
Query: 407 MW 408
           +W
Sbjct: 336 IW 337

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 33/187 (17%)
Query: 105 IYTGSDSNVIRIWKQPEFTECGRLKAKTSM------VVAMEVSHDRVYAAYG--DGKIRV 156
           + TGS  +++++WK  +     RL  + S+      VV++++SH    AA    D  IR+
Sbjct: 51  VVTGSLDDLVKVWKWRD----ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106
Query: 157 WRSTWDNGVKHVK--------LATIPKTGGAVRNLIVGKDKM-----------MKHMGP- 196
           W       +K +         LA  P +        VGK  +           +   G  
Sbjct: 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166
Query: 197 ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-DDGVLYSASD 255
           I SIA +     L S ++D  I ++ I   K + T++ H+ PI +L  + D  +L +ASD
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 256 DATVRVW 262
           D  ++++
Sbjct: 227 DGYIKIY 233

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 90/242 (37%), Gaps = 51/242 (21%)
Query: 195 GPITSI--AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS 252
           G  TS+   +   D+ + + + DK I+V+   + K +  +  H   + AL  A  G+L S
Sbjct: 119 GHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 253 ASDDATVRVWR-------RYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXX 305
            S D TVRVW          F   N   T+      +Y  +K                  
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNS--TVRCLDIVEYKNIK---------YIVTGSRDN 227
Query: 306 XIHYWHKGWFSAQLQYG-------------------GALQGHTHAVMCLASVANYVISGS 346
            +H W     S+   +G                   G L+GH  +V  ++   N V+SGS
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGS 287
Query: 347 ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK 406
            D+T  VW   Q      L +L GH   I   I        + E + C   + S D  ++
Sbjct: 288 YDNTLIVWDVAQ---XKCLYILSGHTDRIYSTIY-------DHERKRC--ISASXDTTIR 335
Query: 407 MW 408
           +W
Sbjct: 336 IW 337

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY 251
           H+  IT +    S + L S+S D  +K+W ++D     T+  H   +  + + D G  + 
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 252 SASDDATVRVWR 263
           SAS D T+R+W 
Sbjct: 198 SASLDGTIRLWE 209

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY 251
           H+  IT +    S + L S+S D  +K+W ++D     T+  H   +  + + D G  + 
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 252 SASDDATVRVWR 263
           SAS D T+R+W 
Sbjct: 195 SASLDGTIRLWE 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.66
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.52
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.52
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.51
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.49
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.4
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.39
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.37
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.36
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.34
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.31
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.27
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.25
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.24
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.22
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.22
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.2
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.17
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.14
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.12
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.07
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.05
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.03
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.02
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.02
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.0
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.95
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.92
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.89
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.88
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.87
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.87
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.85
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.84
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.83
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.81
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.8
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.8
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.78
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.77
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.74
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.73
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.72
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.68
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.64
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.63
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.62
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.62
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.57
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.51
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.49
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.47
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.44
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.44
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.43
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.4
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.36
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.35
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.32
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.29
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.28
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.27
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.25
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.25
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.25
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.17
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.12
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.07
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.06
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.04
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.03
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.0
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.99
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.98
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.98
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.91
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.89
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.85
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.84
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.8
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.79
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.79
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.77
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.76
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.68
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.65
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.65
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.61
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.49
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.47
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.47
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.46
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.38
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.38
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.31
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.3
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.27
3ott_A	758	Two-component system sensor histidine kinase; beta	97.24
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.22
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.19
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.17
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.14
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.01
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.96
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.92
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.9
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.87
3ott_A	758	Two-component system sensor histidine kinase; beta	96.72
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.59
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.55
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.33
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.19
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.13
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.85
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.78
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.71
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.59
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.47
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.29
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.18
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.04
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.96
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	93.84
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.71
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.37
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.2
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	92.12
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	89.64
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.38
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	88.28
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	87.68
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	86.36
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.34
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	84.87
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.63
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	83.57
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.07
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	82.95
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	81.04
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	80.08
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	80.04

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.1e-48  Score=356.01  Aligned_cols=283  Identities=22%  Similarity=0.326  Sum_probs=254.2

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST  160 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~  160 (434)
                      ...+.+|.++|++++|  ++++|++|+.||+|+|||+.+++....+.+|...|.+++|+|+  .|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            4568899999999999  7899999999999999999999999999999999999999987  89999999999999997


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN  240 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  240 (434)
                      ..+.+..+                      .+|...|.+++|+|++++|++|+.|++|++||+++++++..+.+|...|.
T Consensus       181 ~~~~~~~~----------------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~  238 (410)
T 1vyh_C          181 GFECIRTM----------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR  238 (410)
T ss_dssp             SSCEEECC----------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             CCceeEEE----------------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence            66544433                      26999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC--------------------CCEEE
Q 046226          241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD--------------------DGLLY  299 (434)
Q Consensus       241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~  299 (434)
                      ++.+++++ ++++|+.|+.|++||+.      .......+..|...|.+++|+|+                    +.+|+
T Consensus       239 ~~~~~~~g~~l~s~s~D~~v~vwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  312 (410)
T 1vyh_C          239 MVRPNQDGTLIASCSNDQTVRVWVVA------TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL  312 (410)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETT------TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECC------CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence            99999999 99999999999999987      23345567789999999999996                    67899


Q ss_pred             EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE
Q 046226          300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC  377 (434)
Q Consensus       300 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  377 (434)
                      +|+.|+.|++||++....    ...+.+|...|.++.|+  +++|++|+.||.|++||+.++   .++..+.+|...|++
T Consensus       313 sgs~D~~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~~~v~~  385 (410)
T 1vyh_C          313 SGSRDKTIKMWDVSTGMC----LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTS  385 (410)
T ss_dssp             EEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEE
T ss_pred             EEeCCCeEEEEECCCCce----EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEE
Confidence            999999999999875433    23556899999999986  679999999999999999887   677888999999999


Q ss_pred             EEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      ++|+|+         +.+|++|+.||+|++|+++
T Consensus       386 l~~~~~---------~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          386 LDFHKT---------APYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECSS---------SSCEEEEETTSEEEEEC--
T ss_pred             EEEcCC---------CCEEEEEeCCCcEEEEeCC
Confidence            999999         8899999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-46  Score=338.59  Aligned_cols=289  Identities=17%  Similarity=0.269  Sum_probs=252.0

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEe
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVW  157 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vw  157 (434)
                      .++..++.+|.+.|++++|  ++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|+  .+++++.|+.|++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            4567889999999999999  8999999999999999999999999999999999999999997  89999999999999


Q ss_pred             ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc
Q 046226          158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE  237 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  237 (434)
                      ++..........           .       .+.+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|..
T Consensus       125 ~~~~~~~~~~~~-----------~-------~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~  185 (340)
T 1got_B          125 NLKTREGNVRVS-----------R-------ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             ETTTCSBSCEEE-----------E-------EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             ECccCCCcceeE-----------E-------EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCC
Confidence            987653221110           0       1236999999999998765 88999999999999999999999999999


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                      .|.+++|+|++ ++++|+.|+.|++||++      .......+.+|...|.+++|+|++++|++|+.||.|++||++...
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~  259 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETT------TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECC------CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Confidence            99999999999 99999999999999987      234556678899999999999999999999999999999997654


Q ss_pred             ccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          317 AQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       317 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                      ....+  ....+...|.+++|+  +++|++|+.||.|++||+.++   ..+..+.+|.+.|.+++|+|+         +.
T Consensus       260 ~~~~~--~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~d---------g~  325 (340)
T 1got_B          260 ELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDD---------GM  325 (340)
T ss_dssp             EEEEE--CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTT---------SS
T ss_pred             EEEEE--ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCC---------CC
Confidence            33322  122344578888886  679999999999999999887   677889999999999999999         89


Q ss_pred             EEEEeecCCeEEEEe
Q 046226          395 TICTGSLDGVLKMWR  409 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~  409 (434)
                      +|+||+.||.|+|||
T Consensus       326 ~l~s~s~D~~i~iWd  340 (340)
T 1got_B          326 AVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEETTSCEEEEC
T ss_pred             EEEEEcCCccEEecC
Confidence            999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.8e-47  Score=337.86  Aligned_cols=286  Identities=19%  Similarity=0.272  Sum_probs=253.3

Q ss_pred             eeeeEEEeeccccEEEEEE------cCCEEEEEeCCCeEEEecCCCcee--EeeccCCCccEEEEEEeCC--EEEEEEcC
Q 046226           82 YRCISSVLKKDGQILCIAV------GNGFIYTGSDSNVIRIWKQPEFTE--CGRLKAKTSMVVAMEVSHD--RVYAAYGD  151 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~------~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~--~l~~~s~d  151 (434)
                      ......+.+|.+.|++++|      ++++|++|+.|++|+|||+.+.+.  ...+.+|...|.+++|+++  .+++++.|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            4445667889999999999      256999999999999999877653  4568899999999999997  89999999


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  231 (434)
                      +.|++||+.+++.+..+.                      .|...+.+++|+|++++|++|+.||.|++||+++++....
T Consensus       102 ~~i~lWd~~~~~~~~~~~----------------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~  159 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSID----------------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS  159 (321)
T ss_dssp             SEEEEEETTTTEEEEEEE----------------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred             CcEEEEECCCCCEEEEEe----------------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence            999999998776554442                      4778899999999999999999999999999999999999


Q ss_pred             cccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEE
Q 046226          232 IQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW  310 (434)
Q Consensus       232 ~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  310 (434)
                      +..|...|.+++|+|++ +|++++.||.|++||++      .......+.+|..+|.+++|+|++++|++|+.||.|++|
T Consensus       160 ~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~------~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iw  233 (321)
T 3ow8_A          160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA------TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY  233 (321)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT------TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred             ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC------CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEE
Confidence            99999999999999999 99999999999999987      334566778899999999999999999999999999999


Q ss_pred             EcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCC
Q 046226          311 HKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       311 d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  388 (434)
                      |++....    ...+.+|...|.+++|+  +.+|++++.|+.|++||+.++   .++..+.+|.+.|.+++|+|+     
T Consensus       234 d~~~~~~----~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~-----  301 (321)
T 3ow8_A          234 DVQHANL----AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGN-----  301 (321)
T ss_dssp             ETTTCCE----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTT-----
T ss_pred             ECCCcce----eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCC-----
Confidence            9875432    34567899999999996  669999999999999999987   888999999999999999998     


Q ss_pred             CCCcccEEEEeecCCeEEEEecC
Q 046226          389 TEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       389 ~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                          +.+|++++.||.|++||+.
T Consensus       302 ----g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          302 ----GSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ----SSEEEEEETTCCEEEEECC
T ss_pred             ----CCEEEEEeCCCeEEEEeCC
Confidence                8999999999999999964

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-45  Score=334.04  Aligned_cols=291  Identities=16%  Similarity=0.263  Sum_probs=250.0

Q ss_pred             eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEee
Q 046226           83 RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWR  158 (434)
Q Consensus        83 ~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd  158 (434)
                      +...++.+|.+.|+|++|  ++++|++|+.||+|+|||..+++....+..|...|.+++|+|+  .+++++.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            567889999999999999  8999999999999999999999999999999999999999997  899999999999999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP  238 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  238 (434)
                      +.........         ....       .+..|...|.+++|+|++..|++++.|++|++||+++++++..+.+|...
T Consensus       135 ~~~~~~~~~~---------~~~~-------~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~  198 (354)
T 2pbi_B          135 LTFDKNENMA---------AKKK-------SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD  198 (354)
T ss_dssp             CCCCTTCCSG---------GGCE-------EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             Eecccccccc---------ccce-------eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence            8654221100         0011       11259999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcC--CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcc
Q 046226          239 INALVVAD--DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWF  315 (434)
Q Consensus       239 v~~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  315 (434)
                      |.+++++|  ++ .|++|+.||.|++||++      .......+..|...|.+++|+|++.+|++|+.|+.|++||++..
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMR------SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETT------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECC------CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999987  44 99999999999999988      23455667889999999999999999999999999999999765


Q ss_pred             cccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcc
Q 046226          316 SAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       316 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  393 (434)
                      .....+  ....+...+.+++|+  +.+|++|+.|+.|++||+.++   ..+..+.+|.+.|++++|+|+         +
T Consensus       273 ~~~~~~--~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~spd---------g  338 (354)
T 2pbi_B          273 REVAIY--SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSPD---------G  338 (354)
T ss_dssp             EEEEEE--CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTT---------S
T ss_pred             cEEEEE--cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECCC---------C
Confidence            433222  112333467777775  779999999999999999887   677888999999999999999         8


Q ss_pred             cEEEEeecCCeEEEEe
Q 046226          394 CTICTGSLDGVLKMWR  409 (434)
Q Consensus       394 ~~l~s~~~Dg~v~iw~  409 (434)
                      .+|++|+.||+|++|+
T Consensus       339 ~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          339 TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEEEEETTSEEEEEC
T ss_pred             CEEEEEcCCCCEEecC
Confidence            9999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-45  Score=329.00  Aligned_cols=305  Identities=19%  Similarity=0.242  Sum_probs=236.1

Q ss_pred             cceeeeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCc--eeEeec-cC-CCccEEEEEEeCC--EEEEEEcCCe
Q 046226           80 SSYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEF--TECGRL-KA-KTSMVVAMEVSHD--RVYAAYGDGK  153 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~-~~-~~~~v~~l~~~~~--~l~~~s~dg~  153 (434)
                      ...+++.++.+|.+.|++++|..++|++|+.|++|++||+.++  +....+ .. |...|.+++|+|+  .|++++.|+.
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            3567889999999999999996669999999999999999874  445555 44 9999999999997  8999999999


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC----CeeE
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD----SKCI  229 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~----~~~~  229 (434)
                      |++||+........        ......       .+.+|...|.+++|+|++++|++|+.|++|++||+..    .+++
T Consensus        82 v~iw~~~~~~~~~~--------~~~~~~-------~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~  146 (330)
T 2hes_X           82 VSIWAKEESADRTF--------EMDLLA-------IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI  146 (330)
T ss_dssp             EEEEEC-------C--------CCEEEE-------EEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred             EEEEEcccCcCccc--------cceeEE-------EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence            99999854211000        000001       1237999999999999999999999999999999943    3567


Q ss_pred             EEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC--CCEEEEEcCCCe
Q 046226          230 ETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD--DGLLYGGCTDGY  306 (434)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~  306 (434)
                      ..+.+|...|.+++|+|++ +|++++.|+.|++||+..    ........+.+|...|.+++|+|+  +.+|++|+.|+.
T Consensus       147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD----DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET----TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC----CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence            8889999999999999999 999999999999999761    123456678899999999999998  678999999999


Q ss_pred             EEEEEcCccccc----ccccCcccC-cccceEEEEee-CCEEEEecCCCcEEEEeccCCCceeeEEEeecccc-ceeEEE
Q 046226          307 IHYWHKGWFSAQ----LQYGGALQG-HTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG-PIRCAI  379 (434)
Q Consensus       307 i~i~d~~~~~~~----~~~~~~~~~-~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~  379 (434)
                      |++||++.....    ......+.+ |...|.+++|+ +.+|++++.||.|++||..++........+.+|.. .|.+++
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~  302 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVK  302 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEE
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEE
Confidence            999998643211    112223333 88899999997 45899999999999999986521122233467887 899999


Q ss_pred             Eee--cccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          380 AFL--GRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       380 ~~~--~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      |+|  +         +.+|++|+.||+|++|+++.
T Consensus       303 ~~~~~~---------~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          303 WLELNG---------KTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EC--------------CCEEEEETTSEEEEEEC--
T ss_pred             EecCCC---------ceEEEEecCCCcEEEEEecc
Confidence            998  5         78999999999999999875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6e-45  Score=323.52  Aligned_cols=288  Identities=19%  Similarity=0.199  Sum_probs=245.3

Q ss_pred             eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEee
Q 046226           83 RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWR  158 (434)
Q Consensus        83 ~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd  158 (434)
                      +..+++.+|.+.|++++|  ++++|++|+.||.|++||+.+++.+..+..|...|.+++|+++  .+++|+.|+.|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            456789999999999999  8999999999999999999999999999999999999999986  899999999999999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCcc
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSE  237 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~  237 (434)
                      +.+++.+..+.                      +|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|..
T Consensus        84 ~~~~~~~~~~~----------------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           84 YNTGEKVVDFE----------------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (304)
T ss_dssp             TTTCCEEEEEE----------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred             CCCCcEEEEEe----------------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence            98776655443                      69999999999999999999999999999999877 55677889999


Q ss_pred             CeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec--CCCEEEEEcCCCeEEEEEcC
Q 046226          238 PINALVVAD-DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL--DDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       238 ~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~  313 (434)
                      .|.+++|+| ++ .|++|+.|+.|++||++...  .   .......+...+..+.|+|  ++.+|++|+.|+.|++||++
T Consensus       142 ~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~--~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~  216 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--P---NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (304)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEETTCSS--C---SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--c---cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence            999999998 45 89999999999999987211  1   1222345667899999987  77899999999999999987


Q ss_pred             cccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCC
Q 046226          314 WFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETED  391 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  391 (434)
                      ...    ....+.+|...|.+++|+  +.+|++|+.||.|++||+.++   +++..+..|...+.+++++|+.       
T Consensus       217 ~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~-------  282 (304)
T 2ynn_A          217 TKS----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTG-------  282 (304)
T ss_dssp             TTE----EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTC-------
T ss_pred             CCc----cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCC-------
Confidence            543    334567899999999986  559999999999999999987   7888899999999999999873       


Q ss_pred             ccc-EEEEeecCCeEEEEecCCC
Q 046226          392 EYC-TICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       392 ~~~-~l~s~~~Dg~v~iw~~~~~  413 (434)
                       +. ++++|+. ..+.+|++.+.
T Consensus       283 -~~~~~asg~~-~g~~~~~~~~~  303 (304)
T 2ynn_A          283 -RKNYIASGFD-NGFTVLSLGND  303 (304)
T ss_dssp             -GGGCEEEEET-TEEEEEECC--
T ss_pred             -CceEEEEecC-CceEEEEeccC
Confidence             33 4777665 45778887653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.9e-45  Score=328.63  Aligned_cols=305  Identities=18%  Similarity=0.234  Sum_probs=245.6

Q ss_pred             ceeeeEEEeeccc-cEEEEEE--cCCEEEEEeCCCeEEEecCCCceeE---eeccCCCccEEEEEEeCC--EEEEEEcCC
Q 046226           81 SYRCISSVLKKDG-QILCIAV--GNGFIYTGSDSNVIRIWKQPEFTEC---GRLKAKTSMVVAMEVSHD--RVYAAYGDG  152 (434)
Q Consensus        81 ~~~~~~~~~~h~~-~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~l~~~~~--~l~~~s~dg  152 (434)
                      ...++.++.+|.+ .|.+++|  ++++||+|+.|++|+|||+.++...   ....+|...|.+++|+|+  +|++++.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            4678889999988 9999999  8999999999999999999877543   224689999999999997  899999999


Q ss_pred             eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC---eeE
Q 046226          153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS---KCI  229 (434)
Q Consensus       153 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~  229 (434)
                      .|++||+.........                    .+.+|...|.+++|+|++++|++|+.|+.|++||+.++   +++
T Consensus        84 ~v~iw~~~~~~~~~~~--------------------~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  143 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVT--------------------TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV  143 (345)
T ss_dssp             CEEEEEECCC-EEEEE--------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             cEEEEEccCCCeEEEE--------------------EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE
Confidence            9999998754321111                    12369999999999999999999999999999999875   456


Q ss_pred             EEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEE
Q 046226          230 ETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIH  308 (434)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  308 (434)
                      ..+..|...|.+++|+|++ +|++++.|+.|++||++    .........+.+|...|.+++|+|++++|++++.|+.|+
T Consensus       144 ~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~----~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~  219 (345)
T 3fm0_A          144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE----EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR  219 (345)
T ss_dssp             EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec----CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEE
Confidence            7788899999999999999 99999999999999986    122334567788999999999999999999999999999


Q ss_pred             EEEcCccccccc-----------ccCccc-CcccceEEEEee--CCEEEEecCCCcEEEEeccCCCce------eeEEEe
Q 046226          309 YWHKGWFSAQLQ-----------YGGALQ-GHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRH------TMLAVL  368 (434)
Q Consensus       309 i~d~~~~~~~~~-----------~~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~  368 (434)
                      +||.........           ....+. .|...|.+++|+  +..|++++.|+.|++|+.......      ......
T Consensus       220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  299 (345)
T 3fm0_A          220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH  299 (345)
T ss_dssp             EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred             EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence            999643221111           111222 378889999996  569999999999999998764211      112334


Q ss_pred             eccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          369 VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       369 ~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      .+|.+.|++++|+|+.        ..+|+||+.||+|++|++.++++..
T Consensus       300 ~~h~~~V~~v~~~p~~--------~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          300 QAHSQDVNCVAWNPKE--------PGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             TSSSSCEEEEEECSSS--------TTEEEEEETTSCEEEEEECC-----
T ss_pred             ccccCcEeEeEEeCCC--------ceEEEEcCCCCcEEEEEecCCCCcc
Confidence            6899999999999982        3599999999999999999887654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.3e-44  Score=319.59  Aligned_cols=289  Identities=18%  Similarity=0.369  Sum_probs=249.2

Q ss_pred             cceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEE
Q 046226           80 SSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIR  155 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~  155 (434)
                      +.+....++.+|.+.|++++|  ++++|++|+.||.|++|++.+++....+.+|...|.+++|+|+  .|++++.|+.|+
T Consensus        11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            346778889999999999999  8999999999999999999999999999999999999999997  899999999999


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  235 (434)
                      +||+.+++.+..+.                      +|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|
T Consensus        91 vwd~~~~~~~~~~~----------------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  148 (312)
T 4ery_A           91 IWDVSSGKCLKTLK----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH  148 (312)
T ss_dssp             EEETTTCCEEEEEE----------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEECCCCcEEEEEc----------------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence            99998776554442                      69999999999999999999999999999999999999999999


Q ss_pred             ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          236 SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       236 ~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      ...|.+++|+|++ +|++++.||.|++||++.     ..........+...+..++|+|++++|++++.||.|++||++.
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-----GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9999999999999 999999999999999872     1112222345667899999999999999999999999999975


Q ss_pred             ccccccccCcccCcccceE----EEE-eeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCC
Q 046226          315 FSAQLQYGGALQGHTHAVM----CLA-SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEET  389 (434)
Q Consensus       315 ~~~~~~~~~~~~~~~~~v~----~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  389 (434)
                      .....    .+.+|...+.    .+. .++.+|++|+.||.|++||+.++   ..+..+.+|.+.|.+++|+|+      
T Consensus       224 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~------  290 (312)
T 4ery_A          224 GKCLK----TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPT------  290 (312)
T ss_dssp             TEEEE----EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSS------
T ss_pred             CcEEE----EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCc------
Confidence            54332    3334443321    222 24679999999999999999987   778899999999999999999      


Q ss_pred             CCcccEEEEee--cCCeEEEEecC
Q 046226          390 EDEYCTICTGS--LDGVLKMWRVT  411 (434)
Q Consensus       390 ~~~~~~l~s~~--~Dg~v~iw~~~  411 (434)
                         +.+|++++  .||+|++|+.+
T Consensus       291 ---~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          291 ---ENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ---SSEEEEEECTTTCCEEEEECC
T ss_pred             ---CCceEEEEccCCccEEEecCC
Confidence               88999987  69999999965

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-45  Score=334.08  Aligned_cols=291  Identities=14%  Similarity=0.169  Sum_probs=231.1

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeC------CCeEEEecCCCceeEee----ccCCCccEEEEEEeCC-EEEEEEcCCeE
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSD------SNVIRIWKQPEFTECGR----LKAKTSMVVAMEVSHD-RVYAAYGDGKI  154 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~------dg~i~iwd~~~~~~~~~----~~~~~~~v~~l~~~~~-~l~~~s~dg~i  154 (434)
                      ...|++.|.+++|  ||++|++|+.      |+.|++|+..++.....    ...|...|.+++|+|+ .+++++.||+|
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v  117 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV  117 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence            4569999999999  9999999998      78899999887654433    3468889999999997 88899999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  234 (434)
                      ++||+.+++.......                  ...+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+
T Consensus       118 ~lWd~~~~~~~~~~~~------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~  179 (357)
T 4g56_B          118 ELWEILEKESLLVNKF------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA  179 (357)
T ss_dssp             EEC--------CCCCE------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEeeccccceeEEEee------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence            9999987654332211                  1126999999999999999999999999999999999999999999


Q ss_pred             CccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEE
Q 046226          235 HSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWH  311 (434)
Q Consensus       235 ~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d  311 (434)
                      |...|.+++|++++  ++++++.|+.|++||++.....    .......+...+.+++|+|+ +.+|++|+.|+.|++||
T Consensus       180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd  255 (357)
T 4g56_B          180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN  255 (357)
T ss_dssp             CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred             CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeeeccccccccchhhhhcccceEEEeecccceeEEE
Confidence            99999999999887  7999999999999998722111    11233456678999999997 56889999999999999


Q ss_pred             cCcccccccccCcccCcccceEEEEee--C-CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCC
Q 046226          312 KGWFSAQLQYGGALQGHTHAVMCLASV--A-NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  388 (434)
                      ++....    ...+.+|...|.+++|+  + ++|++|+.|++|+|||++++   +++.. .+|.+.|++++|+|..    
T Consensus       256 ~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d----  323 (357)
T 4g56_B          256 IKNPDS----AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLD----  323 (357)
T ss_dssp             SSCGGG----CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSS----
T ss_pred             CCCCcE----eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCC----
Confidence            875433    34567899999999986  3 48999999999999999986   55544 4899999999999832    


Q ss_pred             CCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          389 TEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       389 ~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                          +.+|+|+|.||+|++|++.+..+.
T Consensus       324 ----~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          324 ----HSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             ----TTEEEEEETTSCEEEEECC-----
T ss_pred             ----CCEEEEEcCCCeEEEEECCCCCcc
Confidence                889999999999999999876543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.9e-46  Score=340.11  Aligned_cols=304  Identities=17%  Similarity=0.266  Sum_probs=251.5

Q ss_pred             cceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEE
Q 046226           80 SSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIR  155 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~  155 (434)
                      ....+.+++.+|.+.|++++|  ++++|++|+.||+|+|||+.+++....+..|...|.+++|+|+  .+++++.|+.|+
T Consensus        54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~  133 (380)
T 3iz6_a           54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS  133 (380)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred             ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence            356788999999999999999  8999999999999999999999999999999999999999997  899999999999


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEc--
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETI--  232 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~--  232 (434)
                      +||+.........        ...       ...+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+  
T Consensus       134 iw~~~~~~~~~~~--------~~~-------~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~  198 (380)
T 3iz6_a          134 IFNLSSQADRDGN--------MPV-------SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS  198 (380)
T ss_dssp             EEECCCCSSCCCS--------STT-------CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred             EEECCCCccccCC--------ccc-------eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec
Confidence            9998653211000        000       0123479999999999997 457999999999999999999988877  


Q ss_pred             ---ccCccCeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeE
Q 046226          233 ---QAHSEPINALVVAD-DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYI  307 (434)
Q Consensus       233 ---~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  307 (434)
                         .+|...|.++.+++ ++ ++++|+.|+.|++||++.     .......+.+|...|.+++|+|++++|++|+.||.|
T Consensus       199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~-----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i  273 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI-----TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC  273 (380)
T ss_dssp             CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT-----TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred             ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC-----CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence               57889999999987 55 999999999999999872     123345677899999999999999999999999999


Q ss_pred             EEEEcCcccccccccCc---ccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEe----eccccceeEE
Q 046226          308 HYWHKGWFSAQLQYGGA---LQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVL----VGHRGPIRCA  378 (434)
Q Consensus       308 ~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~~  378 (434)
                      ++||++.......+...   ...+...|.+++|+  +++|++|+.||.|++||+..+   +.+..+    .+|.+.|+++
T Consensus       274 ~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSCCCCCCEE
T ss_pred             EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCCCCceEEE
Confidence            99999865443322111   11233346777775  789999999999999999887   444444    6899999999


Q ss_pred             EEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          379 IAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       379 ~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      +|+|+         +.+|+||+.||+|++|++...++
T Consensus       351 ~~s~d---------g~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          351 GLSSD---------GSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EECSS---------SSEEEEECTTSCEEEEECCSSSS
T ss_pred             EECCC---------CCEEEEeeCCCCEEEEecCCCcc
Confidence            99999         99999999999999999987653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.1e-45  Score=329.09  Aligned_cols=286  Identities=16%  Similarity=0.163  Sum_probs=228.2

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc-----------eeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEE
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF-----------TECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRV  156 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~-----------~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~v  156 (434)
                      |...|.+++|  +|++|++++ |+++++||....           ........+...|.+++|+++ .+++|+.||+|++
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~l  107 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVEL  107 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEE
Confidence            6677999999  899998887 778888873211           111111235667999999998 8999999999999


Q ss_pred             eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc
Q 046226          157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS  236 (434)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  236 (434)
                      ||+.+++........                  ..+|.+.|++++|+|++++|++|+.|++|++||+++++++..+.+|.
T Consensus       108 Wd~~~~~~~~~~~~~------------------~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~  169 (344)
T 4gqb_B          108 WELDENETLIVSKFC------------------KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA  169 (344)
T ss_dssp             EEECTTSSCEEEEEE------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EeccCCCceeEeecc------------------ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence            999887765544321                  12699999999999999999999999999999999999999999999


Q ss_pred             cCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcC
Q 046226          237 EPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       237 ~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~  313 (434)
                      ..|.+++|++++  +|++++.|+.|++||++..  ....  ......+...+.+++|+|+ +++|++|+.||.|++||++
T Consensus       170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~--~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP--KPAS--QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTSS--SCEE--ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             CceEEEEecCCCCCceeeecccccccccccccc--ceee--eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            999999999987  7899999999999999722  1111  1122345567899999994 5788999999999999987


Q ss_pred             cccccccccCcccCcccceEEEEee--C-CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCC
Q 046226          314 WFSAQLQYGGALQGHTHAVMCLASV--A-NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETE  390 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  390 (434)
                      ..+.    ...+.+|...|.+++|+  + ++|++|+.|++|+|||+.++   + +..+.+|.+.|++++|+|+.      
T Consensus       246 ~~~~----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~------  311 (344)
T 4gqb_B          246 STSC----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLN------  311 (344)
T ss_dssp             C--C----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSS------
T ss_pred             CCcE----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCC------
Confidence            5433    34567899999999996  3 47999999999999999876   3 34578999999999999983      


Q ss_pred             CcccEEEEeecCCeEEEEecCCCCc
Q 046226          391 DEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       391 ~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                        ..+|+|+|.||+|++|++.+...
T Consensus       312 --~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          312 --HSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             --TTEEEEEETTSCEEEEECCC---
T ss_pred             --CeEEEEEcCCCeEEEEECCCCCC
Confidence              45788999999999999987643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.8e-44  Score=349.53  Aligned_cols=347  Identities=15%  Similarity=0.197  Sum_probs=271.2

Q ss_pred             CCCcccccCCCCCCCCCCCCC-ccCCCCCCCcccce-----eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecC
Q 046226           48 SSPISLHTSPLSSPRHPFNPT-AAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQ  119 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~  119 (434)
                      ...+.+|...+.+..+.++.. .+++++.|.+++.|     +++.++.+|.+.|.+++|  ++++|++|+.|++|++||+
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence            345678888888888888876 48899999887665     467889999999999999  8999999999999999999


Q ss_pred             CCceeEeecc-------CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccC--------C------
Q 046226          120 PEFTECGRLK-------AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPK--------T------  176 (434)
Q Consensus       120 ~~~~~~~~~~-------~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~--------~------  176 (434)
                      .+++.+..+.       +|...|.+++|+|+  .|++++.|++|++||+.+++....+.......        .      
T Consensus       220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  299 (611)
T 1nr0_A          220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS  299 (611)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred             CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence            9998888774       79999999999997  89999999999999998776554443210000        0      


Q ss_pred             ---CCceeEEEe----ccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc-cc--------------
Q 046226          177 ---GGAVRNLIV----GKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI-QA--------------  234 (434)
Q Consensus       177 ---~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~--------------  234 (434)
                         ...++....    ....+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+ ..              
T Consensus       300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~  379 (611)
T 1nr0_A          300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG  379 (611)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred             EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence               000111000    01134579999999999999999999999999999999876543322 01              


Q ss_pred             -------------------------------------------------------------------CccCeEEEEEcCC
Q 046226          235 -------------------------------------------------------------------HSEPINALVVADD  247 (434)
Q Consensus       235 -------------------------------------------------------------------~~~~v~~~~~~~~  247 (434)
                                                                                         |...+.+++|+|+
T Consensus       380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd  459 (611)
T 1nr0_A          380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND  459 (611)
T ss_dssp             CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred             cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC
Confidence                                                                               1234678899999


Q ss_pred             C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCccc
Q 046226          248 G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ  326 (434)
Q Consensus       248 ~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  326 (434)
                      + +|++|+.|+.|++||+..   . ....... ..|...|.+++|+|++++|++++.|+.|++||+...... .......
T Consensus       460 g~~lasgs~D~~v~lwd~~~---~-~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~-~~~~~~~  533 (611)
T 1nr0_A          460 KQFVAVGGQDSKVHVYKLSG---A-SVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL-AHTNSWT  533 (611)
T ss_dssp             SCEEEEEETTSEEEEEEEET---T-EEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE-SCCCCCC
T ss_pred             CCEEEEeCCCCeEEEEEccC---C-ceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce-eeeeeee
Confidence            9 999999999999999861   1 1112222 568899999999999999999999999999998642111 1111234


Q ss_pred             CcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecc-ccceeEEEEeecccCCCCCCcccEEEEeecCC
Q 046226          327 GHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGH-RGPIRCAIAFLGRFGEETEDEYCTICTGSLDG  403 (434)
Q Consensus       327 ~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg  403 (434)
                      +|...|.+++|+  +++|++|+.|++|++||+.++.. ..+..+.+| ...|.+++|+|+         +. |++++.||
T Consensus       534 ~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~-~~~~~~~~h~~~~v~~v~fs~d---------~~-l~s~~~D~  602 (611)
T 1nr0_A          534 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD-HPIIIKGAHAMSSVNSVIWLNE---------TT-IVSAGQDS  602 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS-CCEEETTSSTTSCEEEEEEEET---------TE-EEEEETTS
T ss_pred             ecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc-ccchhhccCcccCeeEEEEcCC---------CE-EEEecCCC
Confidence            599999999996  66999999999999999987632 122567789 899999999998         77 99999999


Q ss_pred             eEEEEecC
Q 046226          404 VLKMWRVT  411 (434)
Q Consensus       404 ~v~iw~~~  411 (434)
                      +|++|++.
T Consensus       603 ~i~lW~~~  610 (611)
T 1nr0_A          603 NIKFWNVP  610 (611)
T ss_dssp             CEEEEECC
T ss_pred             CEEEEecc
Confidence            99999973

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.1e-44  Score=319.68  Aligned_cols=287  Identities=20%  Similarity=0.322  Sum_probs=241.8

Q ss_pred             cceeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCC-----ceeEeeccCCCccEEEEEEeCC--EEEEEE
Q 046226           80 SSYRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE-----FTECGRLKAKTSMVVAMEVSHD--RVYAAY  149 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~l~~~~~--~l~~~s  149 (434)
                      +.+.+..++.+|.+.|++++|   ++++|++|+.|++|++|++..     +..+..+.+|...|.+++|+++  .+++++
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            356778889999999999999   348999999999999999753     3456788999999999999997  899999


Q ss_pred             cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE
Q 046226          150 GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI  229 (434)
Q Consensus       150 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  229 (434)
                      .|++|++||+.+++....+.                      +|...|.+++|+|++.+|++|+.|++|++||++ ++++
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~----------------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~  141 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFV----------------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCL  141 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEE----------------------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEE
T ss_pred             CCCEEEEEECCCCCeeEEEc----------------------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeE
Confidence            99999999998775544432                      699999999999999999999999999999996 5678


Q ss_pred             EEcccCccCeEEEEEcCC------C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226          230 ETIQAHSEPINALVVADD------G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~------~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  302 (434)
                      ..+.+|...|.++.+.|.      + .+++++.|+.|++||++      .......+.+|...|.+++|+|++++|++|+
T Consensus       142 ~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~  215 (319)
T 3frx_A          142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDGTLIASAG  215 (319)
T ss_dssp             EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT------TTEEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC------cchhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence            888899999999999884      3 79999999999999987      3345566788999999999999999999999


Q ss_pred             CCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEee--------ccc
Q 046226          303 TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLV--------GHR  372 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~h~  372 (434)
                      .||.|++||+........    +.. ...|.+++|+  +.+|++++. +.+++|++...   ..+..+.        .|.
T Consensus       216 ~dg~i~iwd~~~~~~~~~----~~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~  286 (319)
T 3frx_A          216 KDGEIMLWNLAAKKAMYT----LSA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQ---YLVDDLRPEFAGYSKAAE  286 (319)
T ss_dssp             TTCEEEEEETTTTEEEEE----EEC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTE---EEEEEECCCCTTCCGGGC
T ss_pred             CCCeEEEEECCCCcEEEE----ecC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcC---eeeeccCccccccccCcC
Confidence            999999999976543332    222 3578888886  557777765 45999999875   4444433        356


Q ss_pred             cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      ..+.+++|+|+         |++|++|+.||.|++||+.++
T Consensus       287 ~~v~~~~~spd---------g~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          287 PHAVSLAWSAD---------GQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCEEEEEECTT---------SSEEEEEETTSCEEEEEEEEC
T ss_pred             cceeEEEECCC---------CCEEEEeecCceEEEEEEeec
Confidence            77999999999         999999999999999998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-43  Score=320.15  Aligned_cols=290  Identities=16%  Similarity=0.221  Sum_probs=237.1

Q ss_pred             cceeeeEEEeeccccEEEEEE--------cCCEEEEEeCCCeEEEecCCC-------ceeEeeccCCCccEEEEEEeCC-
Q 046226           80 SSYRCISSVLKKDGQILCIAV--------GNGFIYTGSDSNVIRIWKQPE-------FTECGRLKAKTSMVVAMEVSHD-  143 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~--------~~~~l~tg~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~~~-  143 (434)
                      ....+..++.+|.+.|++++|        ++++|++|+.|++|++||+.+       +.....+.+|...|.+++|+|+ 
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            456678889999999999998        678999999999999999864       3456778999999999999997 


Q ss_pred             -EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 046226          144 -RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR  222 (434)
Q Consensus       144 -~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  222 (434)
                       .+++++.|++|++||+.+++.+..+.                      +|...|.+++|+|++++|++++.|+.|++||
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~----------------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd  146 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKRFV----------------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWN  146 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEEEE----------------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEc----------------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence             89999999999999998776554442                      6999999999999999999999999999999


Q ss_pred             cCCCeeEEEcc---cCccCeEEEEEcCCC-----------eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEE
Q 046226          223 IRDSKCIETIQ---AHSEPINALVVADDG-----------VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKT  288 (434)
Q Consensus       223 ~~~~~~~~~~~---~~~~~v~~~~~~~~~-----------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  288 (434)
                      +... ......   .|...|.+++|+|++           ++++++.|+.|++||..       ......+..|...|.+
T Consensus       147 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          147 ILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-------FQIRYTFKAHESNVNH  218 (343)
T ss_dssp             SSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-------TEEEEEEECCSSCEEE
T ss_pred             ccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-------CceeEEEcCccccceE
Confidence            9743 333333   688899999999874           79999999999999954       2344567789999999


Q ss_pred             EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEE
Q 046226          289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLA  366 (434)
Q Consensus       289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (434)
                      ++|+|++++|++|+.||.|++||+........   .+ .+...|.+++|++  .+++ ++.|+.|++||+.++... .+.
T Consensus       219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~---~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~-~~~  292 (343)
T 2xzm_R          219 LSISPNGKYIATGGKDKKLLIWDILNLTYPQR---EF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKA-PVC  292 (343)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEESSCCSSCSE---EE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSC-SEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcccce---ee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCC-ceE
Confidence            99999999999999999999999853322211   11 2344688998874  4555 556888999999876321 222


Q ss_pred             Eee-----------ccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          367 VLV-----------GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       367 ~~~-----------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      .+.           +|...|.+++|+|+         +.+|++|+.||.|++|+++++.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          293 TIEAEPITKAEGQKGKNPQCTSLAWNAL---------GKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             ECCCCSGGGBTTBCCSCCCEEEEEECSS---------SCCEEEEETTSEEEEEEEEEEE
T ss_pred             EeecCcchhhhhhcCCCCceEEEEECCC---------CCeEEEecCCceEEEEEEEccC
Confidence            332           78889999999999         8999999999999999987653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.3e-43  Score=323.77  Aligned_cols=294  Identities=23%  Similarity=0.366  Sum_probs=239.5

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCc------------------cEEEEEEeCC--EE
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS------------------MVVAMEVSHD--RV  145 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~------------------~v~~l~~~~~--~l  145 (434)
                      ..+|.+.|.|++|  +|++||+|+ ++.++||++.+++.+..+..|..                  .|.+++|+|+  .|
T Consensus        60 ~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l  138 (393)
T 1erj_A           60 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  138 (393)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             ecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence            3479999999999  899999987 78999999999988887765532                  4999999997  89


Q ss_pred             EEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC
Q 046226          146 YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD  225 (434)
Q Consensus       146 ~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~  225 (434)
                      ++++.|+.|++||+.+++....+                      .+|...|.+++|+|++++|++++.|++|++||+++
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~~~----------------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~  196 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVMIL----------------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  196 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEE----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEcCCCeEEEEECCCCcEEEEE----------------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence            99999999999999866443333                      26999999999999999999999999999999999


Q ss_pred             CeeEEEcccCccCeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCcceeEE---EEEecccccCeEEEEEecCCCEEEE
Q 046226          226 SKCIETIQAHSEPINALVVAD-DG-VLYSASDDATVRVWRRYFYSENQLHTL---ILTLTAKYSPVKTLTLTLDDGLLYG  300 (434)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~  300 (434)
                      +++...+. +...+.+++++| ++ +|++++.|+.|++||++..  ......   .....+|...|.+++|+|++++|++
T Consensus       197 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~--~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          197 GQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG--FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC--CEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             CeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence            99887776 567899999998 66 9999999999999998721  111111   1122578889999999999999999


Q ss_pred             EcCCCeEEEEEcCccccc--------ccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeec
Q 046226          301 GCTDGYIHYWHKGWFSAQ--------LQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVG  370 (434)
Q Consensus       301 ~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (434)
                      |+.||.|++||++.....        ......+.+|...|.+++++  +.+|++|+.|+.|++||+.++   .++..+.+
T Consensus       274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~  350 (393)
T 1erj_A          274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQG  350 (393)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEEC
T ss_pred             EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECC
Confidence            999999999998753321        11223456888999999985  679999999999999999987   67888999


Q ss_pred             cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          371 HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       371 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      |.+.|.+++|+++.   .+.+++.+|+||+.||+|++|++...
T Consensus       351 h~~~v~~v~~~~~~---~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          351 HRNSVISVAVANGS---SLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CSSCEEEEEECSSC---TTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCCEEEEEecCCc---CcCCCCCEEEEECCCCcEEECccccc
Confidence            99999999998742   23445889999999999999998754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.4e-43  Score=340.53  Aligned_cols=316  Identities=14%  Similarity=0.129  Sum_probs=260.6

Q ss_pred             CCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc--eeEe
Q 046226           56 SPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF--TECG  126 (434)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~--~~~~  126 (434)
                      .......+++++..+++++. ..+..|     +.+.++.+|.+.|++++|  +|++||+|+.||+|+|||+.++  ....
T Consensus        19 g~~~~~~~spdg~~l~~~~~-~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~   97 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   97 (611)
T ss_dssp             TCCCCCEECTTSSEEEEEET-TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CceeEEeeCCCCCEEEeCCC-CEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence            34455566778888877663 344444     456788999999999999  8999999999999999998653  3456


Q ss_pred             eccCCCccEEEEEEeCC--EEEEEEcC----CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226          127 RLKAKTSMVVAMEVSHD--RVYAAYGD----GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       127 ~~~~~~~~v~~l~~~~~--~l~~~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (434)
                      .+..|.+.|.+++|+|+  .|++++.+    +.|++||..  .....                      +.+|...|.++
T Consensus        98 ~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~----------------------l~gh~~~v~~v  153 (611)
T 1nr0_A           98 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TSNGN----------------------LTGQARAMNSV  153 (611)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CBCBC----------------------CCCCSSCEEEE
T ss_pred             eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--CCcce----------------------ecCCCCCceEE
Confidence            78889999999999998  67777764    478899843  22222                      23799999999


Q ss_pred             EEecCCC-EEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226          201 AINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       201 ~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  278 (434)
                      +|+|++. .|++|+.|++|++||..+++++..+.+|...|.+++|+|++ +|++++.|+.|++||+..      ......
T Consensus       154 ~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~------g~~~~~  227 (611)
T 1nr0_A          154 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD------GTKTGV  227 (611)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------CCEEEE
T ss_pred             EECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC------CcEeee
Confidence            9999987 59999999999999999999999999999999999999999 999999999999999861      222333


Q ss_pred             ec-------ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcE
Q 046226          279 LT-------AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTS  351 (434)
Q Consensus       279 ~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i  351 (434)
                      +.       +|...|.+++|+|++++|++++.|++|++||++.......+.. -..+...+.++.++++.+++++.|+.+
T Consensus       228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC-CCCccceeEEEEEcCCEEEEEeCCCcE
Confidence            32       6889999999999999999999999999999876543332211 123445667788899999999999999


Q ss_pred             EEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          352 RVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ++||...+   .....+.+|...|++++|+|+         +++|++++.||+|++||+.+++.
T Consensus       307 ~~~~~~~~---~~~~~~~gh~~~v~~l~~spd---------g~~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          307 NFVNPELG---SIDQVRYGHNKAITALSSSAD---------GKTLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             EEEETTTT---EEEEEECCCSSCEEEEEECTT---------SSEEEEEETTSCEEEEETTTCCE
T ss_pred             EEEeCCCC---CcceEEcCCCCCEEEEEEeCC---------CCEEEEEeCCCcEEEEECCCCce
Confidence            99999876   677788999999999999999         99999999999999999988754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.7e-42  Score=311.61  Aligned_cols=291  Identities=19%  Similarity=0.269  Sum_probs=240.5

Q ss_pred             ccceeeeEEEeeccccEEEEEE--c-CCEEEEEeCCCeEEEecCCCc-----eeEeeccCCCccEEEEEEeCC--EEEEE
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--G-NGFIYTGSDSNVIRIWKQPEF-----TECGRLKAKTSMVVAMEVSHD--RVYAA  148 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~-~~~l~tg~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~l~~~~~--~l~~~  148 (434)
                      .+...+..+|.||.+.|++|+|  + +++|+||+.||+|+|||+.+.     .....+.+|...|.+++|+|+  .++++
T Consensus        25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            3456777889999999999999  3 689999999999999998653     356778999999999999997  89999


Q ss_pred             EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee
Q 046226          149 YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC  228 (434)
Q Consensus       149 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  228 (434)
                      +.|+.|++|+...........                      .+...+..+.+++++.+|++++.|+.+++||+.....
T Consensus       105 ~~d~~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~  162 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTRRFV----------------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK  162 (340)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE----------------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred             cccccceEEeecccceeeeec----------------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence            999999999987654433332                      4778889999999999999999999999999976543


Q ss_pred             -EEEcccCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC
Q 046226          229 -IETIQAHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD  304 (434)
Q Consensus       229 -~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  304 (434)
                       ......|...+.+++|++++   .+++++.|+.|++||++      .......+.+|...|.+++|+|++++|++|+.|
T Consensus       163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  236 (340)
T 4aow_A          163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA------NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD  236 (340)
T ss_dssp             EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC------CCceeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence             44566789999999998775   78899999999999987      344566778899999999999999999999999


Q ss_pred             CeEEEEEcCcccccccccCcccCcccceEEEEeeC-CEEEEecCCCcEEEEeccCCCceeeEE---------Eeeccccc
Q 046226          305 GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA-NYVISGSADSTSRVWAREQDGRHTMLA---------VLVGHRGP  374 (434)
Q Consensus       305 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~h~~~  374 (434)
                      |.|++||++.......    +. +...|.++.+++ ..+++++.|+.|++||++++   ..+.         ...+|...
T Consensus       237 g~i~iwd~~~~~~~~~----~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~  308 (340)
T 4aow_A          237 GQAMLWDLNEGKHLYT----LD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQ  308 (340)
T ss_dssp             CEEEEEETTTTEEEEE----EE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEECCC-------CCCCC
T ss_pred             CeEEEEEeccCceeee----ec-CCceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEeccccceeeeccCCCCC
Confidence            9999999976544332    22 335788888874 46777888999999999876   3333         34578999


Q ss_pred             eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      |++++|+|+         +++|++|+.||.|+|||+.+|+
T Consensus       309 v~~l~~s~d---------g~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          309 CTSLAWSAD---------GQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEECTT---------SSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEEEECCC---------CCEEEEEeCCCEEEEEeCCCcC
Confidence            999999999         8999999999999999999886

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.5e-43  Score=337.53  Aligned_cols=313  Identities=23%  Similarity=0.398  Sum_probs=271.2

Q ss_pred             CCCCcccccCCCCCCCCCCCCCccCCCCCCCccccee----eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226           47 FSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR----CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~  120 (434)
                      ....+..|...+.+..+.+++..+++++.+..+..|+    ++..+.+|.+.|.+++|  ++++|++++.|+.|++||..
T Consensus       254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~  333 (577)
T 2ymu_A          254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN  333 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            3445667778888888888999999988888876654    56778899999999999  89999999999999999975


Q ss_pred             CceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeE
Q 046226          121 EFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT  198 (434)
Q Consensus       121 ~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  198 (434)
                      . ..+..+..|...|.+++|+|+  .+++++.|+.|++||.. ++.+..+                      .+|...|.
T Consensus       334 ~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~----------------------~~~~~~v~  389 (577)
T 2ymu_A          334 G-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL----------------------TGHSSSVR  389 (577)
T ss_dssp             S-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEE----------------------ECCSSCEE
T ss_pred             C-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEe----------------------cCCCCCeE
Confidence            4 556778899999999999997  89999999999999953 2222222                      26999999


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226          199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       199 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  277 (434)
                      +++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.       .....
T Consensus       390 ~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-------~~~~~  461 (577)
T 2ymu_A          390 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-------GQLLQ  461 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-------SCEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-------CCEEE
Confidence            9999999999999999999999995 678888999999999999999999 99999999999999965       23455


Q ss_pred             EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEe
Q 046226          278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWA  355 (434)
Q Consensus       278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd  355 (434)
                      .+..|...|.+++|+|++++|++++.|+.|++||...     +....+.+|...|.+++|+  +++|++++.||.|++||
T Consensus       462 ~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-----CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence            6778999999999999999999999999999999632     2334567899999999986  67999999999999999


Q ss_pred             ccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          356 REQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      .. +   +++..+.+|.+.|++++|+|+         +++|+|++.||+|++||
T Consensus       537 ~~-~---~~~~~~~~h~~~v~~~~fs~d---------g~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          537 RN-G---QLLQTLTGHSSSVWGVAFSPD---------GQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TT-S---CEEEEEECCSSCEEEEEECTT---------SSCEEEEETTSCEEEEC
T ss_pred             CC-C---CEEEEEcCCCCCEEEEEEcCC---------CCEEEEEeCCCEEEEeC
Confidence            64 3   678889999999999999999         89999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1e-41  Score=302.74  Aligned_cols=253  Identities=21%  Similarity=0.326  Sum_probs=220.4

Q ss_pred             eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (434)
                      +....+.+|...|.+++|+|+  .+++++.||.|++||+.++..+..+.                      .|..+|.++
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~----------------------~~~~~v~~~   61 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ----------------------VTETPVRAG   61 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE----------------------CCSSCEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee----------------------ccCCcEEEE
Confidence            345678899999999999997  89999999999999998765544442                      588999999


Q ss_pred             EEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226          201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       201 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      +|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ +|++|+.|+.|++||++.     .......+
T Consensus        62 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~-----~~~~~~~~  136 (304)
T 2ynn_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-----NWALEQTF  136 (304)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG-----TTEEEEEE
T ss_pred             EEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC-----Ccchhhhh
Confidence            999999999999999999999999999999999999999999999999 999999999999999871     22345567


Q ss_pred             cccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee----CCEEEEecCCCcEEEE
Q 046226          280 TAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV----ANYVISGSADSTSRVW  354 (434)
Q Consensus       280 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iw  354 (434)
                      .+|...|.+++|+| ++.+|++|+.|+.|++||++........   ..+|...+..+.+.    +.+|++|+.|+.|++|
T Consensus       137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iW  213 (304)
T 2ynn_A          137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW  213 (304)
T ss_dssp             CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEE
T ss_pred             cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence            88999999999999 6789999999999999998754433322   23566677777764    4699999999999999


Q ss_pred             eccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          355 AREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       355 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      |++++   .++..+.+|...|.+++|+|+         +.+|++|+.||+|++||+.+++...
T Consensus       214 d~~~~---~~~~~~~~h~~~v~~~~~~p~---------~~~l~s~s~Dg~i~iWd~~~~~~~~  264 (304)
T 2ynn_A          214 DYQTK---SCVATLEGHMSNVSFAVFHPT---------LPIIISGSEDGTLKIWNSSTYKVEK  264 (304)
T ss_dssp             ETTTT---EEEEEEECCSSCEEEEEECSS---------SSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             eCCCC---ccceeeCCCCCCEEEEEECCC---------CCEEEEEcCCCeEEEEECCCCceee
Confidence            99987   889999999999999999999         8899999999999999999877543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-41  Score=329.08  Aligned_cols=315  Identities=24%  Similarity=0.399  Sum_probs=273.8

Q ss_pred             CCCCcccccCCCCCCCCCCCCCccCCCCCCCcccce----eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226           47 FSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSY----RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~  120 (434)
                      ....+..|...+.+..+.+++..+++++.+..++.|    +++..+.+|...|.+++|  ++++|++++.|+.|++||. 
T Consensus       213 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-  291 (577)
T 2ymu_A          213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-  291 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-
T ss_pred             EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-
Confidence            344566788888888888899999999888887765    467888999999999999  8999999999999999996 


Q ss_pred             CceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeE
Q 046226          121 EFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT  198 (434)
Q Consensus       121 ~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  198 (434)
                      +++....+.+|...|.+++|+|+  .+++++.|+.|++||..... ...+                      .+|...|.
T Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~----------------------~~~~~~v~  348 (577)
T 2ymu_A          292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTL----------------------TGHSSSVW  348 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEE----------------------CCCSSCEE
T ss_pred             CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEE----------------------eCCCCCEE
Confidence            56777888999999999999997  89999999999999975432 1111                      26899999


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226          199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       199 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  277 (434)
                      +++|+|++++|++++.||.|++||. +++.+..+..|...|.+++|+|++ +|++++.|+.|++||..       .....
T Consensus       349 ~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-------~~~~~  420 (577)
T 2ymu_A          349 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------GQLLQ  420 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-------CCEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-------CCEEE
Confidence            9999999999999999999999995 678888999999999999999999 99999999999999854       23455


Q ss_pred             EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEe
Q 046226          278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWA  355 (434)
Q Consensus       278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd  355 (434)
                      .+..|...|.+++|+|++++|++++.|+.|++||+..     .....+.+|...|.+++|+  +++|++++.|+.|++||
T Consensus       421 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~  495 (577)
T 2ymu_A          421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  495 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             EecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc
Confidence            6778999999999999999999999999999999642     2233566899999999986  67999999999999999


Q ss_pred             ccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          356 REQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      .. +   +++..+.+|...|++++|+|+         +++|++++.||.|++||..
T Consensus       496 ~~-~---~~~~~~~~h~~~v~~l~~s~d---------g~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          496 RN-G---QLLQTLTGHSSSVRGVAFSPD---------GQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             TT-S---CEEEEEECCSSCEEEEEECTT---------SSCEEEEETTSEEEEECTT
T ss_pred             CC-C---CEEEEEeCCCCCEEEEEEcCC---------CCEEEEEECcCEEEEEeCC
Confidence            64 3   678889999999999999999         8999999999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-42  Score=319.01  Aligned_cols=278  Identities=20%  Similarity=0.310  Sum_probs=248.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226           48 SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~  120 (434)
                      ...+.+|..++.+..+.++...+++++.|.+++.|+     ++.++.+|.+.|.+++|  ++++|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            446778999999999999999999999998887765     57889999999999999  78999999999999999999


Q ss_pred             CceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeE
Q 046226          121 EFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT  198 (434)
Q Consensus       121 ~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  198 (434)
                      +++.+..+.+|...|.+++|+|+  .+++++.|+.|++||+.++..+..+.                      +|...|.
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~----------------------~h~~~v~  238 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT----------------------GHREWVR  238 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE----------------------CCSSCEE
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----------------------CCCccEE
Confidence            99999999999999999999996  89999999999999998776554442                      6999999


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC--------------------C-eEEEEeCCC
Q 046226          199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD--------------------G-VLYSASDDA  257 (434)
Q Consensus       199 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~-~l~s~~~dg  257 (434)
                      +++|++++.+|++|+.|+.|++||+.++++...+..|...|.+++|+|+                    + +|++|+.|+
T Consensus       239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~  318 (410)
T 1vyh_C          239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  318 (410)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence            9999999999999999999999999999999999999999999999985                    4 799999999


Q ss_pred             eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226          258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS  337 (434)
Q Consensus       258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  337 (434)
                      .|++||++      .......+.+|...|.+++|+|++++|++|+.||.|++||+....    ....+.+|...|.+++|
T Consensus       319 ~i~iwd~~------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~----~~~~~~~h~~~v~~l~~  388 (410)
T 1vyh_C          319 TIKMWDVS------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----CMKTLNAHEHFVTSLDF  388 (410)
T ss_dssp             EEEEEETT------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC----CCEEEECCSSCEEEEEE
T ss_pred             eEEEEECC------CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eEEEEcCCCCcEEEEEE
Confidence            99999987      334566778899999999999999999999999999999986443    33456789999999999


Q ss_pred             e--CCEEEEecCCCcEEEEecc
Q 046226          338 V--ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       338 ~--~~~l~s~~~dg~i~iwd~~  357 (434)
                      +  +.+|++|+.||.|++|+++
T Consensus       389 ~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          389 HKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CSSSSCEEEEETTSEEEEEC--
T ss_pred             cCCCCEEEEEeCCCcEEEEeCC
Confidence            7  5599999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.8e-42  Score=307.47  Aligned_cols=277  Identities=18%  Similarity=0.208  Sum_probs=243.2

Q ss_pred             CCcccccCCCCCCCCCC----CCCccCCCCCCCcccceee-------eEEEeeccccEEEEEE--cCCEEEEEeCCCeEE
Q 046226           49 SPISLHTSPLSSPRHPF----NPTAAAGSSSPETSSSYRC-------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIR  115 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~  115 (434)
                      +.+.+|...+.+..+.+    ++..+++++.|.+++.|+.       ...+.+|...|.++++  ++.++++|+.|++|+
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~  105 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR  105 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            45568888888887755    3568999999999998864       4468899999999999  789999999999999


Q ss_pred             EecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226          116 IWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH  193 (434)
Q Consensus       116 iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
                      +||+.+++.+..+..|...+.+++|+|+  .+++++.||.|++||+..++....+.                      .|
T Consensus       106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~----------------------~~  163 (321)
T 3ow8_A          106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD----------------------TR  163 (321)
T ss_dssp             EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE----------------------CS
T ss_pred             EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec----------------------CC
Confidence            9999999999999999999999999997  89999999999999998765544332                      57


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce
Q 046226          194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      ...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++ +|++++.|+.|++||++      .
T Consensus       164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~------~  237 (321)
T 3ow8_A          164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ------H  237 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT------T
T ss_pred             CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC------C
Confidence            8889999999999999999999999999999999999999999999999999999 99999999999999987      2


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCc
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADST  350 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  350 (434)
                      ......+.+|...|.+++|+|++.+|++++.|+.|++||++....    ...+.+|...|.+++|+  +++|++++.||.
T Consensus       238 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC----VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE  313 (321)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred             cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE----EEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence            345567788999999999999999999999999999999875433    33556899999999996  569999999999


Q ss_pred             EEEEecc
Q 046226          351 SRVWARE  357 (434)
Q Consensus       351 i~iwd~~  357 (434)
                      |++||+.
T Consensus       314 i~vwd~p  320 (321)
T 3ow8_A          314 IHIYDCP  320 (321)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9999964

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.4e-41  Score=314.59  Aligned_cols=318  Identities=22%  Similarity=0.357  Sum_probs=271.8

Q ss_pred             CCCcccccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCc
Q 046226           48 SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEF  122 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~  122 (434)
                      ...+.+|...+... ..+++..+++++.+.+++.|     +++.++.+|.+.|.+++|++++|++|+.||.|++||+.++
T Consensus       111 ~~~l~~h~~~v~~~-~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  189 (445)
T 2ovr_B          111 PKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG  189 (445)
T ss_dssp             CEEEECSTTSCEEE-EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             eEEecccCCCcEEE-EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC
Confidence            34566777655332 34567888898888876655     4578899999999999999999999999999999999999


Q ss_pred             eeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI  202 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  202 (434)
                      +.+..+.+|...|.++.++++.+++++.||.|++||+.+++....+.                      +|...|.+++|
T Consensus       190 ~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~----------------------~~~~~v~~~~~  247 (445)
T 2ovr_B          190 ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM----------------------GHVAAVRCVQY  247 (445)
T ss_dssp             EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEE----------------------CCSSCEEEEEE
T ss_pred             cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEc----------------------CCcccEEEEEE
Confidence            99999999999999999999999999999999999998766554442                      69999999999


Q ss_pred             ecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc
Q 046226          203 NVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA  281 (434)
Q Consensus       203 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  281 (434)
                        +++++++|+.||.|++||+++++.+..+.+|...|.++.+  ++ .+++++.|+.|++||++      .......+..
T Consensus       248 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~  317 (445)
T 2ovr_B          248 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE------TGNCIHTLTG  317 (445)
T ss_dssp             --CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT------TCCEEEEECC
T ss_pred             --CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC------CCCEEEEEcC
Confidence              7889999999999999999999999999999999999999  45 99999999999999987      2345566778


Q ss_pred             cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCc
Q 046226          282 KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGR  361 (434)
Q Consensus       282 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  361 (434)
                      |...+.++.++  ++++++|+.||.|++||++.......+ .....|...|.++++++++|++|+.||.|++||+.++  
T Consensus       318 ~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~--  392 (445)
T 2ovr_B          318 HQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTL-QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG--  392 (445)
T ss_dssp             CCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE-CSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC--
T ss_pred             CcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEE-ccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCC--
Confidence            88888888774  679999999999999999755433322 1223488899999999999999999999999999988  


Q ss_pred             eeeEEEe-----eccccceeEEEEeecccCCCCCCcccEEEEeecCCe----EEEEecCCC
Q 046226          362 HTMLAVL-----VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV----LKMWRVTRP  413 (434)
Q Consensus       362 ~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~----v~iw~~~~~  413 (434)
                       +.+..+     .+|.+.|++++|+|+         +.+|++|+.||+    |.+||+...
T Consensus       393 -~~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          393 -EFIRNLVTLESGGSGGVVWRIRASNT---------KLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             -CEEEEEEECTTGGGTCEEEEEEECSS---------EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             -ceeeeeeccccCCCCceEEEEEecCC---------EEEEEEcccCCCCccEEEEEECCCC
Confidence             555555     478899999999999         899999999998    999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-40  Score=300.75  Aligned_cols=291  Identities=11%  Similarity=0.191  Sum_probs=251.3

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeE
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKI  154 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i  154 (434)
                      .-.......+.+|.+.|++++|  ++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|+  .+++++.||.|
T Consensus        19 ~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i   98 (369)
T 3zwl_B           19 QGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI   98 (369)
T ss_dssp             SCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             eccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            3345556678999999999999  8999999999999999999999999999999999999999986  89999999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC-----CcEEEEEcCCCe--
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD-----KTIKVWRIRDSK--  227 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~--  227 (434)
                      ++||+.+++....+                       .+...|.+++|+|++++|++++.+     |.|++||+....  
T Consensus        99 ~iwd~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~  155 (369)
T 3zwl_B           99 KLWDVSNGQCVATW-----------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT  155 (369)
T ss_dssp             EEEETTTCCEEEEE-----------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred             EEEECCCCcEEEEe-----------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc
Confidence            99999877655554                       377889999999999999999998     999999997653  


Q ss_pred             ---------eEEEcccCcc--CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC
Q 046226          228 ---------CIETIQAHSE--PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD  295 (434)
Q Consensus       228 ---------~~~~~~~~~~--~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  295 (434)
                               .+..+..|..  .+.+++|+|++ .|++++.||.|++||++     ........+..|...|.+++|+|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~v~~~~~~~~~  230 (369)
T 3zwl_B          156 HELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS-----NNYEYVDSIDLHEKSISDMQFSPDL  230 (369)
T ss_dssp             CCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETT-----TTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             eeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECC-----CCcEeEEEEecCCCceeEEEECCCC
Confidence                     3344455655  89999999999 99999999999999987     1134556677788999999999999


Q ss_pred             CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC--------------cEEEEeccCC
Q 046226          296 GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS--------------TSRVWAREQD  359 (434)
Q Consensus       296 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--------------~i~iwd~~~~  359 (434)
                      ++|++++.||.|++||++.......+     .+...+.++.++  ++++++++.++              .+++||+.++
T Consensus       231 ~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  305 (369)
T 3zwl_B          231 TYFITSSRDTNSFLVDVSTLQVLKKY-----ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE  305 (369)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEE-----ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred             CEEEEecCCceEEEEECCCCceeeee-----cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence            99999999999999999765443332     255677777775  67999999888              8999999987


Q ss_pred             CceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          360 GRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       360 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                         ..+..+.+|...|++++|+|+         +++|++++.||.|++|+++.+.
T Consensus       306 ---~~~~~~~~~~~~v~~~~~s~~---------~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          306 ---EEIGRVQGHFGPLNTVAISPQ---------GTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTT---------SSEEEEEETTSEEEEEEECHHH
T ss_pred             ---cchhheecccCcEEEEEECCC---------CCEEEEEcCCCeEEEEECcccc
Confidence               778888999999999999998         8999999999999999998754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.4e-41  Score=311.25  Aligned_cols=294  Identities=14%  Similarity=0.191  Sum_probs=244.2

Q ss_pred             eeeeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCce------eEeeccCCCccEEEEEEeCC---------EEE
Q 046226           82 YRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFT------ECGRLKAKTSMVVAMEVSHD---------RVY  146 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~l~~~~~---------~l~  146 (434)
                      ..+...+.+|.+.|++++|+.++|++|+.||.|++||+.+++      .+..+..|...|.+++|+++         .|+
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            345667889999999999966999999999999999999887      78888899999999999865         688


Q ss_pred             EEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc-----CCCeEEEEEe----cCCCE-EEEEecCC
Q 046226          147 AAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH-----MGPITSIAIN----VSDDT-LYSASLDK  216 (434)
Q Consensus       147 ~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~s~~~dg  216 (434)
                      +++.||.|++||+...+........                 .+..|     ...|.+++|+    |++++ |++++.||
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg  148 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFE-----------------KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG  148 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEE-----------------EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS
T ss_pred             EEcCCCCEEEEEccCCcccccccce-----------------eecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence            8899999999999876641111000                 01146     5899999999    99999 99999999


Q ss_pred             cEEEEEcCC------CeeEE-----Ec-------ccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226          217 TIKVWRIRD------SKCIE-----TI-------QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       217 ~i~vwd~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  278 (434)
                      .|++||+.+      ++.+.     .+       ..|...|.+++|+|++.+++++.||.|++||++      .......
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~------~~~~~~~  222 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELS------TLRPLYN  222 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETT------TTEEEEE
T ss_pred             cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECC------CCceeEE
Confidence            999999998      66665     66       448889999999998888899999999999987      2344555


Q ss_pred             ecc---c---ccCeEEEEEecCCCEEEEEcCC---CeEEEEEcCcccccccccCcccC-------------cccceEEEE
Q 046226          279 LTA---K---YSPVKTLTLTLDDGLLYGGCTD---GYIHYWHKGWFSAQLQYGGALQG-------------HTHAVMCLA  336 (434)
Q Consensus       279 ~~~---~---~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~-------------~~~~v~~~~  336 (434)
                      +..   |   ...+.+++|+|++++|++++.|   |.|++||++......    .+.+             |...|.+++
T Consensus       223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~  298 (397)
T 1sq9_A          223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG----SLSVPTHSSQASLGEFAHSSWVMSLS  298 (397)
T ss_dssp             EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE----EECBC--------CCBSBSSCEEEEE
T ss_pred             EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc----eeccCcccccccccccccCCcEEEEE
Confidence            666   7   8899999999999999999999   999999987554332    3445             888999999


Q ss_pred             ee--CCEEEEecCCCcEEEEeccCCCceeeEEEee------cc---------------ccceeEEEEeecccCCCCCCcc
Q 046226          337 SV--ANYVISGSADSTSRVWAREQDGRHTMLAVLV------GH---------------RGPIRCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       337 ~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~h---------------~~~v~~~~~~~~~~~~~~~~~~  393 (434)
                      |+  +++|++++.||.|++||+.++   +.+..+.      +|               ...|++++|+|+         +
T Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~---------g  366 (397)
T 1sq9_A          299 FNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK---------G  366 (397)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT---------T
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc---------c
Confidence            96  679999999999999999987   7788888      78               999999999998         5


Q ss_pred             ----------cEEEEeecCCeEEEEecCCCC
Q 046226          394 ----------CTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       394 ----------~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                                .+|++++.||.|++|++.+++
T Consensus       367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                      799999999999999998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.6e-40  Score=326.82  Aligned_cols=284  Identities=20%  Similarity=0.297  Sum_probs=232.4

Q ss_pred             eeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCC-----ceeEeeccCCCccEEEEEEeCC--EEEEEEcC
Q 046226           82 YRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE-----FTECGRLKAKTSMVVAMEVSHD--RVYAAYGD  151 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d  151 (434)
                      ......+.+|.+.|++++|   ++++|+||+.|++|++||+.+     +.....+.+|...|.+++|+++  .|++|+.|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            4455678999999999999   457999999999999999875     3455678899999999999997  89999999


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  231 (434)
                      |.|++||+.++.....+                      .+|...|.+++|+|++++|++|+.|++|++||+........
T Consensus       452 g~v~vwd~~~~~~~~~~----------------------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~  509 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRF----------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI  509 (694)
T ss_dssp             SEEEEEETTTTEEEEEE----------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CcEEEEECCCCcceeEE----------------------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceee
Confidence            99999999876544433                      26999999999999999999999999999999865543332


Q ss_pred             c---ccCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226          232 I---QAHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG  305 (434)
Q Consensus       232 ~---~~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  305 (434)
                      .   .+|...|.+++|+|++   .+++++.|+.|++||++      .......+.+|...|.+++|+|++++|++|+.||
T Consensus       510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~------~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg  583 (694)
T 3dm0_A          510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS------NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG  583 (694)
T ss_dssp             CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC------CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            2   4688899999999986   79999999999999987      2345567788999999999999999999999999


Q ss_pred             eEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEEEeecc------------
Q 046226          306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLAVLVGH------------  371 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h------------  371 (434)
                      .|++||++.......    +. +...|.+++|++  .+|+++ .|+.|++||++++   ..+..+..+            
T Consensus       584 ~i~iwd~~~~~~~~~----~~-~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~  654 (694)
T 3dm0_A          584 VVLLWDLAEGKKLYS----LE-ANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSG  654 (694)
T ss_dssp             BCEEEETTTTEEEEC----CB-CSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTT---EEEEEECCCCC----------
T ss_pred             eEEEEECCCCceEEE----ec-CCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCC---CChhhhccccccccccccccc
Confidence            999999976544332    22 345688888874  355555 5677999999987   455444322            


Q ss_pred             -------ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          372 -------RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       372 -------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                             ...+++++|+|+         +.+|++|+.||.|++|++.
T Consensus       655 ~~~~~~~~~~~~~l~~spd---------g~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          655 PAATKRKVIYCTSLNWSAD---------GSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ------CCCCEEEEEECTT---------SSEEEEEETTSEEEEEEC-
T ss_pred             cccCCceeEEeeeEEEcCC---------CCEEEEEcCCCeEEEEecc
Confidence                   123788999999         9999999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.4e-40  Score=294.79  Aligned_cols=311  Identities=15%  Similarity=0.216  Sum_probs=251.8

Q ss_pred             cCCCCCCCCCCCCCccCCCCCCCcc-----cceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEee
Q 046226           55 TSPLSSPRHPFNPTAAAGSSSPETS-----SSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGR  127 (434)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~  127 (434)
                      ..++.+..++++++.++.+..+..+     ..........+|.+.|++++|  ++++|++++ ||.|++||+.+++....
T Consensus         9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~   87 (337)
T 1gxr_A            9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP   87 (337)
T ss_dssp             EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred             CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence            3445566667777777655543322     122223344579999999999  889999999 99999999987653322


Q ss_pred             ---c--cCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226          128 ---L--KAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       128 ---~--~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (434)
                         +  ..|...|.+++|+|+  .+++++.||.|++||+...+......                    +..|...|.++
T Consensus        88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--------------------~~~~~~~i~~~  147 (337)
T 1gxr_A           88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE--------------------LTSSAPACYAL  147 (337)
T ss_dssp             SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE--------------------EECSSSCEEEE
T ss_pred             eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee--------------------cccCCCceEEE
Confidence               2  278999999999997  79999999999999998765322211                    12588999999


Q ss_pred             EEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226          201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       201 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      +|+|++++|++++.||.|++||+++++.+..+..|...|.+++|+|++ .+++++.||.|++||++.      .......
T Consensus       148 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~  221 (337)
T 1gxr_A          148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE------GRQLQQH  221 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT------TEEEEEE
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC------CceEeee
Confidence            999999999999999999999999999999999999999999999999 999999999999999872      1222222


Q ss_pred             cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEecc
Q 046226          280 TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~  357 (434)
                       .+...+.+++|+|++++|++++.|+.|++||++....     ..+..|...|.++.|+  +++|++++.||.|++||+.
T Consensus       222 -~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          222 -DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             -ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             -cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence             3567899999999999999999999999999875432     2355788899999997  6799999999999999999


Q ss_pred             CCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          358 QDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       358 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      ++   ..+ ....|...|.+++|+|+         +++|++++.||.|++|++.
T Consensus       296 ~~---~~~-~~~~~~~~v~~~~~s~~---------~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          296 YG---ASI-FQSKESSSVLSCDISVD---------DKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             TC---CEE-EEEECSSCEEEEEECTT---------SCEEEEEETTSCEEEEEEE
T ss_pred             CC---eEE-EEecCCCcEEEEEECCC---------CCEEEEecCCCeEEEEEEe
Confidence            87   333 33468899999999999         8999999999999999973

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.7e-40  Score=301.11  Aligned_cols=294  Identities=12%  Similarity=0.111  Sum_probs=236.0

Q ss_pred             cceeeeEEEeeccccEEEEEE--cC-CEEEEEeCCCeEEEecCCCceeEeecc--CCCccEEEEEEeC-C--EEEEEEcC
Q 046226           80 SSYRCISSVLKKDGQILCIAV--GN-GFIYTGSDSNVIRIWKQPEFTECGRLK--AKTSMVVAMEVSH-D--RVYAAYGD  151 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~--~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~-~--~l~~~s~d  151 (434)
                      ..+.....+.+|.+.|++++|  ++ ++|++|+.||.|+|||+.+++....+.  +|...|.+++|+| +  .+++++.|
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            457778889999999999999  66 899999999999999999877776665  6999999999999 3  89999999


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  231 (434)
                      +.|++||+.. .....+..                   ...|...|.+++|+|++++|++|+.||.|++||+ +++.+..
T Consensus       141 ~~i~iwd~~~-~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~  199 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAK-------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFK  199 (383)
T ss_dssp             TEEEEEETTS-CEEEEEEC-------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEE
T ss_pred             CEEEEEECCC-CceEEEec-------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEE
Confidence            9999999974 22222210                   1136688999999999999999999999999999 5788899


Q ss_pred             cccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEE
Q 046226          232 IQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIH  308 (434)
Q Consensus       232 ~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  308 (434)
                      +..|...|.+++|+|++  ++++++.|+.|++||++.....  ......+ .|...|.+++|+| ++++|++++.|+.|+
T Consensus       200 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            99999999999999998  7999999999999999832221  2233333 5889999999999 999999999999999


Q ss_pred             EEEcCcccccccccC---cccCccc----------ceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeec--c
Q 046226          309 YWHKGWFSAQLQYGG---ALQGHTH----------AVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVG--H  371 (434)
Q Consensus       309 i~d~~~~~~~~~~~~---~~~~~~~----------~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--h  371 (434)
                      +||++.......+..   ....|..          .+..+.++  +++  +|+.||.|++||+.++   +.+..+.+  |
T Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~~~l~~~~~  351 (383)
T 3ei3_B          277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLVHQLRDPNA  351 (383)
T ss_dssp             EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEEEEECBTTB
T ss_pred             EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---ceeeeecCCCC
Confidence            999976544332211   1111222          23334443  444  7889999999999987   67777776  5


Q ss_pred             ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          372 RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       372 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      ...+..++|+|+         +.+|++|+ ||.|++||+++
T Consensus       352 ~~~~~~~~~s~~---------g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          352 AGIISLNKFSPT---------GDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CSCCCEEEECTT---------SSEEEEEE-TTEEEEEECC-
T ss_pred             CceEEEEEEecC---------ccEEEEec-CCcEEEEecCC
Confidence            677888899999         89999997 99999999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.1e-41  Score=301.44  Aligned_cols=277  Identities=19%  Similarity=0.317  Sum_probs=240.5

Q ss_pred             CCCCcccccCCCCCCCCCCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecC
Q 046226           47 FSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQ  119 (434)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~  119 (434)
                      ....+.+|...+.+..+++++..+++++.|.+++.|+     ++..+..|.+.|.+++|  ++++|++|+.|+.|++||+
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            3456789999999999999999999999998887765     57788899999999999  8999999999999999999


Q ss_pred             CCc----eeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC
Q 046226          120 PEF----TECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM  194 (434)
Q Consensus       120 ~~~----~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (434)
                      .+.    .....+.+|...|.++.|+++ .+++++.|+.|++||+.+++....+                      .+|.
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~----------------------~~h~  184 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF----------------------TGHT  184 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE----------------------CCCS
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEE----------------------cCCC
Confidence            765    455678899999999999886 8999999999999999876544433                      2699


Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCccee
Q 046226          195 GPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLH  273 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~  273 (434)
                      ..|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++ .|++++.||.|++||++.      .
T Consensus       185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~------~  258 (340)
T 1got_B          185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA------D  258 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------T
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC------C
Confidence            999999999999999999999999999999999999999999999999999999 999999999999999872      1


Q ss_pred             EEEEEe--cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC
Q 046226          274 TLILTL--TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS  349 (434)
Q Consensus       274 ~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  349 (434)
                      .....+  ..+...|.+++|+|++++|++|+.||.|++||+.....    ...+.+|...|.+++|+  +.+|++|+.||
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~----~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR----AGVLAGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE----eeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence            122222  23345799999999999999999999999999864432    34567899999999996  56999999999


Q ss_pred             cEEEEe
Q 046226          350 TSRVWA  355 (434)
Q Consensus       350 ~i~iwd  355 (434)
                      .|+|||
T Consensus       335 ~i~iWd  340 (340)
T 1got_B          335 FLKIWN  340 (340)
T ss_dssp             CEEEEC
T ss_pred             cEEecC
Confidence            999997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-39  Score=290.39  Aligned_cols=289  Identities=19%  Similarity=0.292  Sum_probs=248.6

Q ss_pred             cceeeeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEE
Q 046226           80 SSYRCISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRV  156 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~v  156 (434)
                      ..++++.++.+|.+.|++++| ++++|++|+.||.|++||+.+++....+..|...|.+++|+|+  .+++++.||.|++
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            356788999999999999999 9999999999999999999999999999999999999999997  8999999999999


Q ss_pred             eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc
Q 046226          157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS  236 (434)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  236 (434)
                      |++..........                   .+.+|...|.+++|  ++++|++++.||.|++||  .++.+..+..|.
T Consensus        86 ~~~~~~~~~~~~~-------------------~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~  142 (313)
T 3odt_A           86 VPLFATSGEDPLY-------------------TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN  142 (313)
T ss_dssp             EETTCCTTSCC-C-------------------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCS
T ss_pred             EEeeecCCCCccc-------------------chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCC
Confidence            9987643222111                   11269999999999  578999999999999999  678888899999


Q ss_pred             cCeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc-cccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          237 EPINALVVAD-DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       237 ~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      ..+.++.+.+ ++ .+++++.||.|++||..        .....+.. +...+.+++|+|++. +++++.||.|++||++
T Consensus       143 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~  213 (313)
T 3odt_A          143 ASVWDAKVVSFSENKFLTASADKTIKLWQND--------KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMH  213 (313)
T ss_dssp             SCEEEEEEEETTTTEEEEEETTSCEEEEETT--------EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETT
T ss_pred             CceeEEEEccCCCCEEEEEECCCCEEEEecC--------ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECC
Confidence            9999999988 56 99999999999999944        23334444 888999999999988 9999999999999987


Q ss_pred             cccccccccCcccCcccceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCc
Q 046226          314 WFSAQLQYGGALQGHTHAVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDE  392 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  392 (434)
                      ....    ...+.+|...|.+++++++ .|++++.||.|++||+.++   +.+..+..|...|.+++|+|+         
T Consensus       214 ~~~~----~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~---------  277 (313)
T 3odt_A          214 TGDV----LRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSN---------  277 (313)
T ss_dssp             TCCE----EEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTT---------
T ss_pred             chhh----hhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccC---------
Confidence            5433    3345688999999999744 7999999999999999988   778888999999999999998         


Q ss_pred             ccEEEEeecCCeEEEEecCCCCccc
Q 046226          393 YCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       393 ~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      +. +++++.||.|++|++.+++...
T Consensus       278 ~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          278 GD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             SC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             CC-EEEEeCCCcEEEEeCCCCceee
Confidence            66 6779999999999999876543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.5e-39  Score=305.07  Aligned_cols=287  Identities=17%  Similarity=0.270  Sum_probs=246.4

Q ss_pred             eeEEEeecccc-EEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCC
Q 046226           84 CISSVLKKDGQ-ILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTW  161 (434)
Q Consensus        84 ~~~~~~~h~~~-v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~  161 (434)
                      ....+.+|.+. +.|+.+++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.+
T Consensus       113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~  192 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK  192 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTT
T ss_pred             ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCC
Confidence            45678899887 5788889999999999999999999999999999999999999999987 999999999999999987


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe--cCCCEEEEEecCCcEEEEEcCCCee-----------
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN--VSDDTLYSASLDKTIKVWRIRDSKC-----------  228 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~-----------  228 (434)
                      ++....+                      .+|...|.+++|+  +++++|++|+.||.|++||+.+++.           
T Consensus       193 ~~~~~~~----------------------~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  250 (464)
T 3v7d_B          193 GCCTHVF----------------------EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP  250 (464)
T ss_dssp             TEEEEEE----------------------CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSS
T ss_pred             CcEEEEE----------------------CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcc
Confidence            6544433                      2699999999999  4778999999999999999987652           


Q ss_pred             ------------EEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC
Q 046226          229 ------------IETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD  295 (434)
Q Consensus       229 ------------~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  295 (434)
                                  +..+.+|...+.++.  +++ .+++++.|+.|++||++      .......+.+|...|.+++|+|++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~------~~~~~~~~~~~~~~v~~~~~~~~~  322 (464)
T 3v7d_B          251 LVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVA------QMKCLYILSGHTDRIYSTIYDHER  322 (464)
T ss_dssp             EEESCGGGCTTEEEEECCCSSCEEEEE--EETTEEEEEETTSCEEEEETT------TTEEEEEECCCSSCEEEEEEETTT
T ss_pred             eEeeccCCCeEEEEEccCccceEEEEc--CCCCEEEEEeCCCeEEEEECC------CCcEEEEecCCCCCEEEEEEcCCC
Confidence                        556778888888874  445 99999999999999987      344566778899999999999999


Q ss_pred             CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccce
Q 046226          296 GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPI  375 (434)
Q Consensus       296 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v  375 (434)
                      +++++|+.||.|++||++...    ....+.+|...|.++.+++++|++++.||.|++||+.+..   ..... .|...+
T Consensus       323 ~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~---~~~~~-~~~~~~  394 (464)
T 3v7d_B          323 KRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS---RKFSY-HHTNLS  394 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC---EEEEE-ECTTCC
T ss_pred             CEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc---eeeee-cCCCCc
Confidence            999999999999999987543    3345668999999999999999999999999999999863   33332 366778


Q ss_pred             eEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcccc
Q 046226          376 RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCG  418 (434)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~  418 (434)
                      ..++|+++         +.+|++|+ ||.|++||+.+++.+..
T Consensus       395 ~~~~~~~~---------~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          395 AITTFYVS---------DNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             CEEEEEEC---------SSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             cEEEEEeC---------CCEEEEec-CCeEEEEECCCCcEEeh
Confidence            88999998         88999998 99999999999886643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3e-39  Score=302.79  Aligned_cols=285  Identities=22%  Similarity=0.379  Sum_probs=250.2

Q ss_pred             eeeeEEEeecccc-EEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecC
Q 046226           82 YRCISSVLKKDGQ-ILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRST  160 (434)
Q Consensus        82 ~~~~~~~~~h~~~-v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~  160 (434)
                      .+....+.+|.+. +.|+.+++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+++.+++++.||.|++||+.
T Consensus       108 ~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             cceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECC
Confidence            3456778999886 588888999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN  240 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  240 (434)
                      +++....+                      .+|...|.+++|+  ++.+++|+.||.|++||+.+++.+..+.+|...|.
T Consensus       188 ~~~~~~~~----------------------~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~  243 (445)
T 2ovr_B          188 TGECIHTL----------------------YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR  243 (445)
T ss_dssp             TTEEEEEE----------------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred             cCcEEEEE----------------------CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEE
Confidence            76544433                      2699999999996  67899999999999999999999999999999999


Q ss_pred             EEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc
Q 046226          241 ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ  320 (434)
Q Consensus       241 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  320 (434)
                      ++.+. ...+++++.||.|++||++      .......+..|...+.+++|  ++.++++++.||.|++||++.....  
T Consensus       244 ~~~~~-~~~l~~~~~dg~i~iwd~~------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~--  312 (445)
T 2ovr_B          244 CVQYD-GRRVVSGAYDFMVKVWDPE------TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI--  312 (445)
T ss_dssp             EEEEC-SSCEEEEETTSCEEEEEGG------GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE--
T ss_pred             EEEEC-CCEEEEEcCCCEEEEEECC------CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE--
Confidence            99992 3399999999999999987      34456677789999999999  7899999999999999998754432  


Q ss_pred             ccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeec---cccceeEEEEeecccCCCCCCcccEEE
Q 046226          321 YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG---HRGPIRCAIAFLGRFGEETEDEYCTIC  397 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~l~  397 (434)
                        ..+.+|...+.++.++++++++|+.||.|++||++++   ..+..+.+   |...|++++|+           +.+|+
T Consensus       313 --~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~  376 (445)
T 2ovr_B          313 --HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN-----------KNFVI  376 (445)
T ss_dssp             --EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC-----------SSEEE
T ss_pred             --EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC-----------CCEEE
Confidence              3456888999999999999999999999999999887   66677765   88999999996           45899


Q ss_pred             EeecCCeEEEEecCCCCccc
Q 046226          398 TGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       398 s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      +|+.||.|++||+.+++...
T Consensus       377 s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          377 TSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             EEETTSEEEEEETTTCCEEE
T ss_pred             EEeCCCeEEEEECCCCceee
Confidence            99999999999999987654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.3e-41  Score=304.60  Aligned_cols=298  Identities=15%  Similarity=0.228  Sum_probs=239.9

Q ss_pred             eeeeEEEe-eccccEEEEEEc------CCEEEEEeCCCeEEEecCCCceeEeeccC-----CCccEEEEEEeCC------
Q 046226           82 YRCISSVL-KKDGQILCIAVG------NGFIYTGSDSNVIRIWKQPEFTECGRLKA-----KTSMVVAMEVSHD------  143 (434)
Q Consensus        82 ~~~~~~~~-~h~~~v~~~~~~------~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~~~~------  143 (434)
                      +++...+. +|.+.|++++|.      ...+++++.++.|++||+.+++.+..+..     |...|.+++|+++      
T Consensus         7 ~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   86 (366)
T 3k26_A            7 FKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP   86 (366)
T ss_dssp             CEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE
T ss_pred             EEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC
Confidence            45544544 799999999993      45677777778999999998777666553     5678999999987      


Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEE
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWR  222 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd  222 (434)
                      .+++++.||.|++||+.+++.+..+.                      +|...|.+++|+| ++++|++++.||.|++||
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~~~~~~~----------------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd  144 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQCIKHYV----------------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWN  144 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCCEEEEEE----------------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             EEEEecCCCEEEEEEchhceEeeeec----------------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            79999999999999998766554442                      6999999999999 899999999999999999


Q ss_pred             cCCCeeEEEc---ccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce----------------------eEEE
Q 046226          223 IRDSKCIETI---QAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL----------------------HTLI  276 (434)
Q Consensus       223 ~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~----------------------~~~~  276 (434)
                      +++++.+..+   ..|...|.+++|+|++ +|++++.||.|++||++.......                      ....
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T 3k26_A          145 IQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF  224 (366)
T ss_dssp             TTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred             eecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence            9999998888   6899999999999999 999999999999999873211000                      0112


Q ss_pred             EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc----------cccCcccCcccceEEEEe--e--CCEE
Q 046226          277 LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL----------QYGGALQGHTHAVMCLAS--V--ANYV  342 (434)
Q Consensus       277 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~v~~~~~--~--~~~l  342 (434)
                      .....|...|.+++|+  +++|++++.||.|++||++......          .....+..|...|.++++  +  +++|
T Consensus       225 ~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          225 STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred             ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence            2334588899999998  7899999999999999987654321          123345567777776665  4  7899


Q ss_pred             EEecCCCcEEEEeccCCCcee-eEEEeecc--ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          343 ISGSADSTSRVWAREQDGRHT-MLAVLVGH--RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       343 ~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      ++|+.||.|++||+.++.... ....+.+|  ...|++++|+|+         +++|++++.||.|++||+.+
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD---------SSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT---------SSEEEEEETTSEEEEEEC--
T ss_pred             EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC---------CCeEEEEeCCCEEEEEEecC
Confidence            999999999999999874332 55577777  799999999998         89999999999999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.7e-41  Score=300.86  Aligned_cols=272  Identities=16%  Similarity=0.131  Sum_probs=221.8

Q ss_pred             ccCCCCCCCCCCCCCccCCCCCCCcccceeee----------------EEEeeccccEEEEEE-cCCEEEEEeCCCeEEE
Q 046226           54 HTSPLSSPRHPFNPTAAAGSSSPETSSSYRCI----------------SSVLKKDGQILCIAV-GNGFIYTGSDSNVIRI  116 (434)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~i  116 (434)
                      +...+.+..+++++..+++++ +.+.+.|+..                .....|...|.+++| .++.|++|+.||+|+|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~l  107 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVEL  107 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEE
Confidence            344567778889999888776 5556655421                123446778999999 6678999999999999


Q ss_pred             ecCCCceeEee----ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226          117 WKQPEFTECGR----LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM  190 (434)
Q Consensus       117 wd~~~~~~~~~----~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
                      ||+.+++.+..    ..+|...|.+++|+|+  .|++|+.|++|++||+.+++.+..+                      
T Consensus       108 Wd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~----------------------  165 (344)
T 4gqb_B          108 WELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY----------------------  165 (344)
T ss_dssp             EEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----------------------
T ss_pred             EeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE----------------------
Confidence            99988765443    4589999999999997  8999999999999999877555444                      


Q ss_pred             cCcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcCCC--eEEEEeCCCeEEEEecc
Q 046226          191 MKHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQA--HSEPINALVVADDG--VLYSASDDATVRVWRRY  265 (434)
Q Consensus       191 ~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~  265 (434)
                      .+|...|.+++|++++. +|++|+.|++|++||+++++.+..+..  +...+.+++|+|++  +|++|+.||.|++||++
T Consensus       166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            26999999999999874 788999999999999999998887753  55679999999865  78899999999999987


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--C-CE
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--A-NY  341 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~  341 (434)
                            ..+.+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||++....     ..+.+|...|.+++|+  + .+
T Consensus       246 ------~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-----~~~~~H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          246 ------STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-----FRSQAHRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             ------C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-----EEECCCSSCEEEEEECSSSTTE
T ss_pred             ------CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-----EEEcCCCCCEEEEEEeCCCCeE
Confidence                  334456678899999999999987 5799999999999999875432     2356899999999996  3 37


Q ss_pred             EEEecCCCcEEEEeccCC
Q 046226          342 VISGSADSTSRVWAREQD  359 (434)
Q Consensus       342 l~s~~~dg~i~iwd~~~~  359 (434)
                      |++|+.|++|++|++.+.
T Consensus       315 las~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          315 LTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEETTSCEEEEECCC-
T ss_pred             EEEEcCCCeEEEEECCCC
Confidence            889999999999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.5e-41  Score=314.65  Aligned_cols=301  Identities=14%  Similarity=0.107  Sum_probs=225.4

Q ss_pred             cccceeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCcee--EeeccCCCccEEEEEEeC-C--EEEEEE
Q 046226           78 TSSSYRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFTE--CGRLKAKTSMVVAMEVSH-D--RVYAAY  149 (434)
Q Consensus        78 ~~~~~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~-~--~l~~~s  149 (434)
                      .+..++......+|...|+||+|   ++++||+|+.||.|+|||+.+++.  ...+.+|.+.|.+|+|+| +  .|++++
T Consensus       105 ~~~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          105 TLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             TTTTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             cccceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            34556667778889999999999   567999999999999999977653  445678999999999997 3  899999


Q ss_pred             cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE
Q 046226          150 GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI  229 (434)
Q Consensus       150 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  229 (434)
                      .||+|++||++.... ..+..                   ...+...+.+++|+|++++|++|+.||.|++||++ ++.+
T Consensus       185 ~D~~v~iwd~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~  243 (435)
T 4e54_B          185 MEGTTRLQDFKGNIL-RVFAS-------------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKEL  243 (435)
T ss_dssp             SSSCEEEEETTSCEE-EEEEC-------------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBC
T ss_pred             CCCEEEEeeccCCce-eEEec-------------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-ccee
Confidence            999999999865321 11110                   01345568899999999999999999999999986 5667


Q ss_pred             EEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeE
Q 046226          230 ETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYI  307 (434)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  307 (434)
                      ..+.+|...|.+++|+|++  ++++++.|+.|++||++......   ......+|...|.+++|+|++++|++++.||.|
T Consensus       244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i  320 (435)
T 4e54_B          244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA---SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEI  320 (435)
T ss_dssp             CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS---CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCE
T ss_pred             EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc---eEEEeeeccccccceeECCCCCeeEEEcCCCEE
Confidence            8889999999999999987  78899999999999998332221   222345688899999999999999999999999


Q ss_pred             EEEEcCcccccccccCcccCcc-------------cceEEEEe--eCC-EEEEecCCCcEEEEeccCCCceeeEEEe-ec
Q 046226          308 HYWHKGWFSAQLQYGGALQGHT-------------HAVMCLAS--VAN-YVISGSADSTSRVWAREQDGRHTMLAVL-VG  370 (434)
Q Consensus       308 ~i~d~~~~~~~~~~~~~~~~~~-------------~~v~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~  370 (434)
                      ++||+...............+.             ..+..+.+  ++. .++++..++.|++||..++   ..+..+ .+
T Consensus       321 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~  397 (435)
T 4e54_B          321 RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDP  397 (435)
T ss_dssp             EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCS
T ss_pred             EEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCC
Confidence            9999976544332221111110             11111211  122 2222334568999999987   555554 57


Q ss_pred             cccceeEE-EEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          371 HRGPIRCA-IAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       371 h~~~v~~~-~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      |...|.++ +|+|+         |.+|++|+ |+.|+||++++++.
T Consensus       398 ~~~~v~s~~~fspd---------g~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          398 ESSGISSLNEFNPM---------GDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             SCCCCCCEEEECTT---------SSCEEEEC-SSEEEECCCC----
T ss_pred             CCCcEEEEEEECCC---------CCEEEEEc-CCcEEEEECCcCee
Confidence            88889887 69998         88999876 88999999998874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.6e-40  Score=298.73  Aligned_cols=291  Identities=10%  Similarity=0.046  Sum_probs=223.1

Q ss_pred             cccEEEEEE--cCCEEEEEeCC-------CeEEEecCCCcee----------EeeccCCCccEEEEEEeCCEEEEEEc--
Q 046226           92 DGQILCIAV--GNGFIYTGSDS-------NVIRIWKQPEFTE----------CGRLKAKTSMVVAMEVSHDRVYAAYG--  150 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~d-------g~i~iwd~~~~~~----------~~~~~~~~~~v~~l~~~~~~l~~~s~--  150 (434)
                      .-+|+|++|  ++++|++|+.|       +.|++|++.....          ...+..|...|.+++++++.+++++.  
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            458999999  89999998754       3699999865321          23467888999999999998888754  


Q ss_pred             ---------CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE--ecCCcEE
Q 046226          151 ---------DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA--SLDKTIK  219 (434)
Q Consensus       151 ---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~~dg~i~  219 (434)
                               |+.+++|++...........             .........+...+.+++|+|||++++++  +.|++|+
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~  160 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLT-------------SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR  160 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEE-------------EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEee-------------eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence                     55666776654332211110             00011122456679999999999998754  4789999


Q ss_pred             EEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226          220 VWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL  298 (434)
Q Consensus       220 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  298 (434)
                      +||+++++++..+. |...|.+++|+|++ ++++++.++ +++|+..    ............|...+.+++|+|+++++
T Consensus       161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~----~~~~~~~~~~~~~~~~v~~v~fspdg~~l  234 (365)
T 4h5i_A          161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTV----TGSCIARKTDFDKNWSLSKINFIADDTVL  234 (365)
T ss_dssp             EEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETT----TCCEEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred             EeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEec----cCcceeeeecCCCCCCEEEEEEcCCCCEE
Confidence            99999999998886 77889999999999 777777555 5566544    11222334455678889999999999999


Q ss_pred             EEEcCCC----eEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEE-eecc
Q 046226          299 YGGCTDG----YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAV-LVGH  371 (434)
Q Consensus       299 ~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h  371 (434)
                      ++++.|+    .+++||+............+.+|...|.+++|+  |++|++|+.|+.|+|||++++   +++.. +.+|
T Consensus       235 ~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH  311 (365)
T 4h5i_A          235 IAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAH  311 (365)
T ss_dssp             EEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSS
T ss_pred             EEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcc
Confidence            9998887    688898765544444445667899999999986  679999999999999999987   77776 4799


Q ss_pred             ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          372 RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       372 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      ..+|++++|+|+         |++|||||.|++|+||+++..
T Consensus       312 ~~~V~~v~fSpd---------g~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          312 SFAITEVTISPD---------STYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SSCEEEEEECTT---------SCEEEEEETTSEEEEEECCTT
T ss_pred             cCCEEEEEECCC---------CCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999         999999999999999999754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.8e-40  Score=300.73  Aligned_cols=296  Identities=14%  Similarity=0.168  Sum_probs=241.0

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce--eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCC
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT--ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTW  161 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~  161 (434)
                      +..|.++|++++|  ++++|++|+.|+.|++||+.+++  .+..+.+|...|.+++|+|+  .+++++.||.|++||+..
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            3459999999999  89999999999999999999887  88889999999999999987  899999999999999976


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee----EEEcccCcc
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC----IETIQAHSE  237 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~  237 (434)
                      ++......                    +..|...|.+++|+|++++|++++.||.|++||++.++.    ......|..
T Consensus        84 ~~~~~~~~--------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~  143 (372)
T 1k8k_C           84 RTWKPTLV--------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS  143 (372)
T ss_dssp             TEEEEEEE--------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             CeeeeeEE--------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence            54322221                    125889999999999999999999999999999988762    333356889


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEecccccC------------cceeEEEEEecccccCeEEEEEecCCCEEEEEcCC
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWRRYFYSE------------NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD  304 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  304 (434)
                      .|.+++|+|++ +|++++.||.|++||++....            .........+..|...+.+++|+|++++|++++.|
T Consensus       144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  223 (372)
T 1k8k_C          144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD  223 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence            99999999999 999999999999999742110            11234566677889999999999999999999999


Q ss_pred             CeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccC--CC--------------------
Q 046226          305 GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQ--DG--------------------  360 (434)
Q Consensus       305 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~--~~--------------------  360 (434)
                      |.|++||++....    ...+..|...|.+++|+  +.+|++| .|+.|++|++.+  +.                    
T Consensus       224 ~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (372)
T 1k8k_C          224 STVCLADADKKMA----VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  298 (372)
T ss_dssp             TEEEEEEGGGTTE----EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             CEEEEEECCCCce----eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence            9999999875433    33456788889999886  4566666 899999999987  31                    


Q ss_pred             ---------ceeeE------EEe-eccccceeEEEEeecccCCCCCCcc---cEEEEeecCCeEEEEecCCCCcc
Q 046226          361 ---------RHTML------AVL-VGHRGPIRCAIAFLGRFGEETEDEY---CTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       361 ---------~~~~~------~~~-~~h~~~v~~~~~~~~~~~~~~~~~~---~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                               .....      ..+ .+|.+.|++++|.+..        +   .+|+||+.||.|++|++.+++..
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          299 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG--------KAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEEST--------TTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             hhhhhhcccccccccCccccccccccccCCcceeEEecCC--------CcceeeEEEecCCCceEEEEecChhHh
Confidence                     00010      223 4899999999987552        6   89999999999999999876654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.7e-40  Score=307.20  Aligned_cols=281  Identities=21%  Similarity=0.380  Sum_probs=238.0

Q ss_pred             eeccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceee
Q 046226           89 LKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHV  168 (434)
Q Consensus        89 ~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~  168 (434)
                      .+|...|+|+++++++|++|+.||.|++||+.+++.+..+.+|...|.+++|.++.+++|+.||.|++||+.+++.+..+
T Consensus       130 ~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  209 (435)
T 1p22_A          130 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTL  209 (435)
T ss_dssp             CSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred             cCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            45778899999999999999999999999999999999999999999999998889999999999999999877655444


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE---EEcccCccCeEEEEEc
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI---ETIQAHSEPINALVVA  245 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~  245 (434)
                                            .+|...|.+++|+  ++++++|+.||.|++||+.+++.+   ..+.+|...|.++++.
T Consensus       210 ----------------------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  265 (435)
T 1p22_A          210 ----------------------IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  265 (435)
T ss_dssp             ----------------------CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred             ----------------------cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC
Confidence                                  2699999999996  569999999999999999987655   6778899999999992


Q ss_pred             CCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc
Q 046226          246 DDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL  325 (434)
Q Consensus       246 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  325 (434)
                       ...+++|+.||.|++||++      .......+..|...+.++.++  ++++++|+.||.|++||++....    ...+
T Consensus       266 -~~~l~s~~~dg~i~vwd~~------~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~----~~~~  332 (435)
T 1p22_A          266 -DKYIVSASGDRTIKVWNTS------TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC----LRVL  332 (435)
T ss_dssp             -TTEEEEEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE----EEEE
T ss_pred             -CCEEEEEeCCCeEEEEECC------cCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCE----EEEE
Confidence             3399999999999999987      334556677899999999984  68999999999999999875433    3356


Q ss_pred             cCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCce------eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226          326 QGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRH------TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       326 ~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                      .+|...|.++++++++|++|+.||.|++||+.++...      .++..+.+|.+.|.+++|  +         +.+|++|
T Consensus       333 ~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~---------~~~l~s~  401 (435)
T 1p22_A          333 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D---------EFQIVSS  401 (435)
T ss_dssp             CCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C---------SSCEEEC
T ss_pred             eCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C---------CCEEEEE
Confidence            6899999999999999999999999999999765211      178888999999999999  4         6789999


Q ss_pred             ecCCeEEEEecCCCCccc
Q 046226          400 SLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       400 ~~Dg~v~iw~~~~~~~~~  417 (434)
                      +.||.|++||+.+.....
T Consensus       402 s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          402 SHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             CSSSEEEEEC--------
T ss_pred             eCCCEEEEEECCCCCCcc
Confidence            999999999998876544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-40  Score=307.20  Aligned_cols=330  Identities=14%  Similarity=0.120  Sum_probs=267.6

Q ss_pred             cccCCCCCCCCCCCCC-ccCCCCCCCcccceee---------------eEEEee----------ccccEEEEEE--cCCE
Q 046226           53 LHTSPLSSPRHPFNPT-AAAGSSSPETSSSYRC---------------ISSVLK----------KDGQILCIAV--GNGF  104 (434)
Q Consensus        53 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~----------h~~~v~~~~~--~~~~  104 (434)
                      .|...+.+..+.+++. .+++++.+..+..|+.               ...+..          |.+.|++++|  ++++
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            4458899999999999 9999999988888877               223333          6889999999  8999


Q ss_pred             EEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeE
Q 046226          105 IYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN  182 (434)
Q Consensus       105 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (434)
                      |++|+.||.|++|| .+++.+..+..|...|.+++|+|+  .+++++.|+.|++||+..++....+........  .+. 
T Consensus       123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~-  198 (425)
T 1r5m_A          123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS--SIN-  198 (425)
T ss_dssp             EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred             EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc--cee-
Confidence            99999999999999 678888899999999999999987  899999999999999987765544422110000  000 


Q ss_pred             EEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEE
Q 046226          183 LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRV  261 (434)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~i  261 (434)
                          ..........+.+++|++++ .+++++.||.|++||+.+++.+..+..|...|.+++|+|++ +|++++.|+.|++
T Consensus       199 ----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  273 (425)
T 1r5m_A          199 ----AENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI  273 (425)
T ss_dssp             -----------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ----eccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence                00001122338999999874 68889999999999999999999999999999999999999 9999999999999


Q ss_pred             EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--C
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--A  339 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  339 (434)
                      ||++.      ......+..|...+.+++|+|++ ++++++.||.|++||++....    ...+..|...|.+++++  +
T Consensus       274 ~d~~~------~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~  342 (425)
T 1r5m_A          274 WHGGN------GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL----LALSIVDGVPIFAGRISQDG  342 (425)
T ss_dssp             ECSSS------BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE----EEEEECTTCCEEEEEECTTS
T ss_pred             EECCC------CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE----eEecccCCccEEEEEEcCCC
Confidence            99872      23344556788999999999999 999999999999999875433    23455788899999986  6


Q ss_pred             CEEEEecCCCcEEEEeccCCC-----------------ceeeEEEeecccc--ceeEEEEeecccCCCCCCcccEEEEee
Q 046226          340 NYVISGSADSTSRVWAREQDG-----------------RHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       340 ~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                      ++|++++.||.|++||+.++.                 ....+..+.+|..  .|++++|+|+         +.+|++++
T Consensus       343 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~~~~  413 (425)
T 1r5m_A          343 QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA---------GNKISVAY  413 (425)
T ss_dssp             SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT---------SSEEEEEE
T ss_pred             CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC---------CceEEEEe
Confidence            799999999999999998762                 0117888999977  9999999999         89999999


Q ss_pred             cCCeEEEEecC
Q 046226          401 LDGVLKMWRVT  411 (434)
Q Consensus       401 ~Dg~v~iw~~~  411 (434)
                      .||.|++|+++
T Consensus       414 ~dg~i~iw~~~  424 (425)
T 1r5m_A          414 SLQEGSVVAIP  424 (425)
T ss_dssp             SSSCCEEEECC
T ss_pred             cCceEEEEeec
Confidence            99999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.5e-40  Score=303.87  Aligned_cols=316  Identities=12%  Similarity=0.131  Sum_probs=254.1

Q ss_pred             CCCCCCCCCCCCccCCCCCCCcccceeeeEE-----EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeecc
Q 046226           57 PLSSPRHPFNPTAAAGSSSPETSSSYRCISS-----VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLK  129 (434)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  129 (434)
                      ......+++++..+++++.+..+..|+....     +..| ..+....+  ++++|++|+.||.|++||+.+++....+.
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence            3456677888999999998888777765322     3334 33333344  89999999999999999999999999999


Q ss_pred             CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226          130 AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD  207 (434)
Q Consensus       130 ~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (434)
                      .|...|.+++|+|+  .|++++.|+.|++||+..++.+..+.                      +|...|.+++|+|+++
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----------------------~h~~~v~~~~~~~~~~  194 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI----------------------GHRATVTDIAIIDRGR  194 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE----------------------CCSSCEEEEEEETTTT
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc----------------------CCCCcEEEEEEcCCCC
Confidence            99999999999997  89999999999999998776655543                      6999999999999999


Q ss_pred             EEEEEecCCcEEEEEcCCCeeEEEccc---CccCeEEEE---------------------EcCCC-eEEEEeCCCeEEEE
Q 046226          208 TLYSASLDKTIKVWRIRDSKCIETIQA---HSEPINALV---------------------VADDG-VLYSASDDATVRVW  262 (434)
Q Consensus       208 ~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~---------------------~~~~~-~l~s~~~dg~i~iw  262 (434)
                      +|++++.||.|++||+++++.+..+..   +...+.+++                     |+|++ +|++++.||.|++|
T Consensus       195 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH  274 (420)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred             EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence            999999999999999999999888875   334455544                     56788 99999999999999


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEecCCC-EEEEEcCCCeEEEEEcCcccccccccCcccC-cccceEEEEee-C
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGGCTDGYIHYWHKGWFSAQLQYGGALQG-HTHAVMCLASV-A  339 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~  339 (434)
                      |++.     ..........|...+.+++|+|++. +|++|+.||.|++||++......   ..+.. |...|.++.+. +
T Consensus       275 d~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~  346 (420)
T 3vl1_A          275 NVFS-----KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV---GEFLINEGTPINNVYFAAG  346 (420)
T ss_dssp             ETTT-----CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS---EEEEESTTSCEEEEEEETT
T ss_pred             ECCC-----CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch---hhhhccCCCCceEEEeCCC
Confidence            9871     2223333456788999999999998 99999999999999997653322   22333 66778888775 6


Q ss_pred             CEEEEecCCCcEEEEeccCCCcee------eEEEeeccccceeEEEEeecccCCCCCCccc---EEEEeecCCeEEEEec
Q 046226          340 NYVISGSADSTSRVWAREQDGRHT------MLAVLVGHRGPIRCAIAFLGRFGEETEDEYC---TICTGSLDGVLKMWRV  410 (434)
Q Consensus       340 ~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~---~l~s~~~Dg~v~iw~~  410 (434)
                      ++|++++.||.|++|++.......      ....+.+|.+.|.+++|+|+         +.   .|++++.+|.+.+|++
T Consensus       347 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~~g~l~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          347 ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD---------DESNGEVLEVGKNNFCALYNL  417 (420)
T ss_dssp             EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC---------SSSSCEEEEEETTTEEEEEES
T ss_pred             CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccC---------CCCcceEEEEcCCceEEEEec
Confidence            699999999999999998743221      22346688999999999999         66   6777788999999998


Q ss_pred             CC
Q 046226          411 TR  412 (434)
Q Consensus       411 ~~  412 (434)
                      ++
T Consensus       418 ~~  419 (420)
T 3vl1_A          418 SN  419 (420)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-40  Score=305.57  Aligned_cols=318  Identities=14%  Similarity=0.237  Sum_probs=241.0

Q ss_pred             CCCCCCccCCCCCCCcccceeeeEEE-eeccccEEEEEE---cCCEEEEEeCCCeEEEecCCC---ce---eEeeccCCC
Q 046226           63 HPFNPTAAAGSSSPETSSSYRCISSV-LKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE---FT---ECGRLKAKT  132 (434)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~---~~---~~~~~~~~~  132 (434)
                      +.++...++++. .+ ....+++..+ .+|.+.|++++|   ++++|++|+.||+|+|||+.+   +.   ....+ .|.
T Consensus        35 f~~~~~~~~~~~-~w-~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~  111 (437)
T 3gre_A           35 FGPIQEIVRSPN-MG-NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCS  111 (437)
T ss_dssp             GCCCCCCCCCCC-GG-GCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECS
T ss_pred             cCCccccccccc-cc-cccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCC
Confidence            344444554443 23 2556788888 889999999999   478999999999999999866   32   22222 489


Q ss_pred             ccEEEEEEeCC--EEEEEEcCCeEEEeecC---CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE--EecC
Q 046226          133 SMVVAMEVSHD--RVYAAYGDGKIRVWRST---WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA--INVS  205 (434)
Q Consensus       133 ~~v~~l~~~~~--~l~~~s~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~  205 (434)
                      ..|.+++|+|+  .|++++.||.|++||+.   .++........       .+..+....   .++...+.++.  ++++
T Consensus       112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------~i~~~~~~~---~~~~~~~~~~~~~~~~~  181 (437)
T 3gre_A          112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-------CIRKINLKN---FGKNEYAVRMRAFVNEE  181 (437)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-------EEEEEEGGG---GSSCCCEEEEEEEECSS
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc-------eeEEEEccC---cccccCceEEEEEEcCC
Confidence            99999999996  89999999999999985   33333222111       111111100   01667788888  5588


Q ss_pred             CCEEEEEecCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec-c
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKCIETIQA--HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT-A  281 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~  281 (434)
                      +.+|++|+.||.|++||+++++++..+..  |...|.+++|+|++ +|++|+.||.|++||++      .......+. .
T Consensus       182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~------~~~~~~~~~~~  255 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR------FNVLIRSWSFG  255 (437)
T ss_dssp             CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT------TTEEEEEEBCT
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC------CccEEEEEecC
Confidence            99999999999999999999999999988  88999999999999 99999999999999998      233444443 6


Q ss_pred             cccCeEEEEEec----CCCEEEEEcCCCeEEEEEcCcccccccccC--------------------cccC--cccceEEE
Q 046226          282 KYSPVKTLTLTL----DDGLLYGGCTDGYIHYWHKGWFSAQLQYGG--------------------ALQG--HTHAVMCL  335 (434)
Q Consensus       282 ~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------~~~~--~~~~v~~~  335 (434)
                      |...|.+++|+|    ++.+|++|+.||.|++||++.......+..                    .+.+  |...|.++
T Consensus       256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l  335 (437)
T 3gre_A          256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI  335 (437)
T ss_dssp             TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred             CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence            777899996654    677999999999999999975542222110                    1233  78889999


Q ss_pred             EeeC-CEEEEecCCCcEEEEeccCCCceeeEEEeec-------------------------------------cccceeE
Q 046226          336 ASVA-NYVISGSADSTSRVWAREQDGRHTMLAVLVG-------------------------------------HRGPIRC  377 (434)
Q Consensus       336 ~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------------------------h~~~v~~  377 (434)
                      ++++ ++|++|+.||.|++||+.++.   ....+.+                                     |.+.|++
T Consensus       336 ~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  412 (437)
T 3gre_A          336 SVSNDKILLTDEATSSIVMFSLNELS---SSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS  412 (437)
T ss_dssp             EEETTEEEEEEGGGTEEEEEETTCGG---GCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEE
T ss_pred             EECCceEEEecCCCCeEEEEECCCcc---cceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceee
Confidence            8874 489999999999999998873   3333332                                     8999999


Q ss_pred             EEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      ++|+++.       ++.+|++|+.||.|+||+
T Consensus       413 i~~~~~~-------~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          413 ISTCEVD-------ETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEESS-------SSEEEEEEETTSCEEEEC
T ss_pred             EeeeccC-------CceEEEEEcCCceEEEeC
Confidence            9999871       167999999999999995

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=295.00  Aligned_cols=292  Identities=14%  Similarity=0.137  Sum_probs=234.5

Q ss_pred             eEEEeeccccEEEEEE--cCC-EEEEEeC---CCeEEEecCCCceeEeec-cCCCccEEEEEEeCC-----EEEEEEcCC
Q 046226           85 ISSVLKKDGQILCIAV--GNG-FIYTGSD---SNVIRIWKQPEFTECGRL-KAKTSMVVAMEVSHD-----RVYAAYGDG  152 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~-~l~tg~~---dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~-----~l~~~s~dg  152 (434)
                      ...+.+|.+.|.+++|  ++. ++++|+.   ||.|++||+.+++..... ..|...|.+++|+|+     .+++++.||
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            3456789999999999  564 5566766   999999999987765443 368999999999984     689999999


Q ss_pred             eEEEeecCCCC-CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE------ecCCCEEEEEecCCcEEEEEcCC
Q 046226          153 KIRVWRSTWDN-GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI------NVSDDTLYSASLDKTIKVWRIRD  225 (434)
Q Consensus       153 ~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~dg~i~vwd~~~  225 (434)
                      .|++||+...+ ....+                      .+|...|.+++|      +|++++|++++.||.|++||+++
T Consensus        91 ~i~iwd~~~~~~~~~~~----------------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~  148 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSV----------------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ  148 (357)
T ss_dssp             CEEEECTTSCSSCSEEE----------------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS
T ss_pred             eEEEEeCCCCCccEEEE----------------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC
Confidence            99999998765 33333                      269999999955      67899999999999999999998


Q ss_pred             Ce-eEEEcccCcc----CeEEEE----EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec--
Q 046226          226 SK-CIETIQAHSE----PINALV----VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL--  293 (434)
Q Consensus       226 ~~-~~~~~~~~~~----~v~~~~----~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  293 (434)
                      ++ .+..+..|.+    .+.+++    |++++ ++++++.||.|++||++..      .. .....+...+.+++|+|  
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~-~~~~~~~~~v~~~~~~~~~  221 (357)
T 3i2n_A          149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------AL-RWETNIKNGVCSLEFDRKD  221 (357)
T ss_dssp             CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT------EE-EEEEECSSCEEEEEESCSS
T ss_pred             CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC------ce-eeecCCCCceEEEEcCCCC
Confidence            86 6777766554    889998    67788 9999999999999998721      11 23355778999999999  


Q ss_pred             -CCCEEEEEcCCCeEEEEEcCccccccccc-CcccCcccceEEEEeeCC---EEEEecCCCcEEEEeccCCCce------
Q 046226          294 -DDGLLYGGCTDGYIHYWHKGWFSAQLQYG-GALQGHTHAVMCLASVAN---YVISGSADSTSRVWAREQDGRH------  362 (434)
Q Consensus       294 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~------  362 (434)
                       ++.+|++++.||.|++||++.......+. ..+.+|...|.+++|+++   +|++++.||.|++||++.+...      
T Consensus       222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  301 (357)
T 3i2n_A          222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE  301 (357)
T ss_dssp             SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred             CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence             99999999999999999987543322211 123388999999999754   7999999999999999865432      


Q ss_pred             ----------eeEEEeeccccceeEEEEeecccCCCCCCcccEEE-EeecCCeEEEEecCCCC
Q 046226          363 ----------TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC-TGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       363 ----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~~Dg~v~iw~~~~~~  414 (434)
                                ..+..+.+|...|++++|+|+         +.+|+ +++.||.|++|++.+.+
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPD---------KRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             SCCCCCCCEEEEEEEEECCSSCEEEEEECSS---------STTEEEEEETTSEEEEEEECC--
T ss_pred             CCccccccccceeeccccCCCCeeEEEEcCC---------CCeEEEEecCCCcEEEEECCCcc
Confidence                      578889999999999999999         78887 89999999999998764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=292.46  Aligned_cols=292  Identities=21%  Similarity=0.271  Sum_probs=238.7

Q ss_pred             CCcccccC-CCCCCCCCCCCCccCCCCCCCcccceeee-------EE-EeeccccEEEEEE--cCCEEEEEeCCCeEEEe
Q 046226           49 SPISLHTS-PLSSPRHPFNPTAAAGSSSPETSSSYRCI-------SS-VLKKDGQILCIAV--GNGFIYTGSDSNVIRIW  117 (434)
Q Consensus        49 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iw  117 (434)
                      ..+.+|.. .+....+++++..+++++.|.+++.|+..       .. ..+|.+.|.+++|  ++++|++|+.|++|++|
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw   88 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW   88 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence            34556766 77788889999999999999999888652       12 2579999999999  89999999999999999


Q ss_pred             cCCCc--eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226          118 KQPEF--TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH  193 (434)
Q Consensus       118 d~~~~--~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
                      |+...  +.+..+.+|...|.+++|+|+  .|++++.|+.|++||+...........                   +.+|
T Consensus        89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------------~~~h  149 (345)
T 3fm0_A           89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-------------------LNSH  149 (345)
T ss_dssp             EECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE-------------------ECCC
T ss_pred             EccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE-------------------ecCc
Confidence            98765  467788999999999999997  899999999999999976544332211                   1269


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe--eEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCc
Q 046226          194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      ...|.+++|+|++++|++|+.|+.|++||+++++  +...+.+|...|.+++|+|++ +|++++.|+.|++||.......
T Consensus       150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence            9999999999999999999999999999998875  457888999999999999999 9999999999999997522211


Q ss_pred             ---------ceeEEEEEecc-cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc-----cCcccCcccceEEE
Q 046226          271 ---------QLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY-----GGALQGHTHAVMCL  335 (434)
Q Consensus       271 ---------~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~v~~~  335 (434)
                               ........+.+ |...|.+++|++++..|++++.|+.|++|+..........     .....+|...|.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence                     12233334444 7889999999999999999999999999998654322111     12245899999999


Q ss_pred             EeeC---CEEEEecCCCcEEEEeccCC
Q 046226          336 ASVA---NYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       336 ~~~~---~~l~s~~~dg~i~iwd~~~~  359 (434)
                      +|++   .+|++|+.||.|++|++.+.
T Consensus       310 ~~~p~~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          310 AWNPKEPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred             EEeCCCceEEEEcCCCCcEEEEEecCC
Confidence            9974   48999999999999999886

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-40  Score=303.82  Aligned_cols=297  Identities=12%  Similarity=0.102  Sum_probs=227.1

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc--eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCC
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF--TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTW  161 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~  161 (434)
                      +..|.++|++++|  ++++|++|+.|+.|+|||+.++  +.+..+.+|...|.+++|+|+  .|++++.|+.|++||+..
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            4457889999999  8999999999999999999988  788889999999999999997  899999999999999987


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe---eEEEccc-Ccc
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK---CIETIQA-HSE  237 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~-~~~  237 (434)
                      +.......                   .+.+|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |..
T Consensus        87 ~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  147 (377)
T 3dwl_C           87 DGTWKQTL-------------------VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS  147 (377)
T ss_dssp             --CCCCEE-------------------ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred             CCceeeee-------------------EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence            65111110                   123699999999999999999999999999999999877   4677777 999


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCc------------ceeEEEEEecccccCeEEEEEecCCCEEEEEcCC
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWRRYFYSEN------------QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD  304 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  304 (434)
                      .|.+++|+|++ +|++++.|+.|++||++.....            ........+ .|...|.+++|+|++++|++++.|
T Consensus       148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d  226 (377)
T 3dwl_C          148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD  226 (377)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT
T ss_pred             CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC
Confidence            99999999999 9999999999999998521111            134455556 889999999999999999999999


Q ss_pred             CeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCc---------------------
Q 046226          305 GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGR---------------------  361 (434)
Q Consensus       305 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---------------------  361 (434)
                      |.|++||++...........+.+|...|.+++|+  +++|++|+.|+.+ +|+....+.                     
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T 3dwl_C          227 SSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNT  305 (377)
T ss_dssp             TEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSB
T ss_pred             CcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccc
Confidence            9999999986655433356777899999999886  6688888766665 666542210                     


Q ss_pred             ------eeeE------EEe----------------eccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          362 ------HTML------AVL----------------VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       362 ------~~~~------~~~----------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                            ...+      ..+                ..|.+.|+++.+.+...     .+...|+|||.||.|++||+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~-----~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          306 GEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP-----GNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET-----TEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC-----CceEEEEeecCCCcEEEecC
Confidence                  0000      111                13999999999877620     00126999999999999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-41  Score=312.89  Aligned_cols=320  Identities=13%  Similarity=0.118  Sum_probs=258.3

Q ss_pred             CCCCCCCCCCCC-ccCCC----------CCCCcccceeee-------EEEeeccccEEEEEE--cCCEEEEEeCCCeEEE
Q 046226           57 PLSSPRHPFNPT-AAAGS----------SSPETSSSYRCI-------SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRI  116 (434)
Q Consensus        57 ~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~-------~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~i  116 (434)
                      .+.+..+++++. .++++          +.+..+..|+..       .....|.+.|++++|  ++++|++|+.||.|++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v   93 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL   93 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence            455556666655 56666          677777777642       112458999999999  8999999999999999


Q ss_pred             ecCCC----ceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCC------ceeeEeeeccCCCCceeEE
Q 046226          117 WKQPE----FTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNG------VKHVKLATIPKTGGAVRNL  183 (434)
Q Consensus       117 wd~~~----~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~  183 (434)
                      ||+.+    .+.+..+..|...|.+++|+|+   .+++++.|+.|++||+...+.      ....               
T Consensus        94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------  158 (416)
T 2pm9_A           94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP---------------  158 (416)
T ss_dssp             ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC---------------
T ss_pred             eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc---------------
Confidence            99987    4578889999999999999975   799999999999999987651      1111               


Q ss_pred             EeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEcccC------ccCeEEEEEcCCC--eEEEEe
Q 046226          184 IVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQAH------SEPINALVVADDG--VLYSAS  254 (434)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~--~l~s~~  254 (434)
                          .....|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..+      ...|.+++|+|++  ++++++
T Consensus       159 ----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  234 (416)
T 2pm9_A          159 ----GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT  234 (416)
T ss_dssp             ----CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred             ----ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence                012368999999999999 789999999999999999999999888876      7899999999997  899999


Q ss_pred             CCC---eEEEEecccccCcceeEEEEEec-ccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc
Q 046226          255 DDA---TVRVWRRYFYSENQLHTLILTLT-AKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT  329 (434)
Q Consensus       255 ~dg---~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  329 (434)
                      .|+   .|++||++...     .....+. .|...|.+++|+| ++++|++++.||.|++||++....    ...+.+|.
T Consensus       235 ~d~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~----~~~~~~~~  305 (416)
T 2pm9_A          235 GSDNDPSILIWDLRNAN-----TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ----LSQFPARG  305 (416)
T ss_dssp             CCSSSCCCCEEETTSTT-----SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE----EEEEECSS
T ss_pred             CCCCCceEEEEeCCCCC-----CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc----ceeecCCC
Confidence            998   99999998221     2233445 7889999999999 999999999999999999875433    33556888


Q ss_pred             cceEEEEee--C-CEEEEecCCCcEEEEeccCCCceeeEE--------------------------------Eeeccccc
Q 046226          330 HAVMCLASV--A-NYVISGSADSTSRVWAREQDGRHTMLA--------------------------------VLVGHRGP  374 (434)
Q Consensus       330 ~~v~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------------------~~~~h~~~  374 (434)
                      ..|.+++|+  + .+|++++.||.|++||+.+........                                ....|..+
T Consensus       306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (416)
T 2pm9_A          306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP  385 (416)
T ss_dssp             SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCC
T ss_pred             CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCC
Confidence            899999987  3 699999999999999998764211110                                01116778


Q ss_pred             eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      +.+++|+|+         |++|++++.||.|+||++.++
T Consensus       386 ~~~~~~s~d---------g~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          386 SPAAHWAFG---------GKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             SCCCEEETT---------TEEECBCTTSSCBCCBCCCCC
T ss_pred             ccceEEeeC---------CeEEEEeCCCCeEEEEEeccC
Confidence            889999999         999999999999999999865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.8e-39  Score=288.06  Aligned_cols=280  Identities=18%  Similarity=0.258  Sum_probs=233.8

Q ss_pred             CCcccccCCCCCCCCCCC-CCccCCCCCCCcccceee----------eEEEeeccccEEEEEE--cCCEEEEEeCCCeEE
Q 046226           49 SPISLHTSPLSSPRHPFN-PTAAAGSSSPETSSSYRC----------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIR  115 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~  115 (434)
                      ..+.+|...+.+..+.++ +..+++++.|.+++.|+.          +.++.+|.+.|.+++|  ++++|++|+.|++|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~   90 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR   90 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence            357789999988877664 578999999999988854          5678999999999999  899999999999999


Q ss_pred             EecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226          116 IWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH  193 (434)
Q Consensus       116 iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
                      +||+.+++.+..+.+|...|.+++|+++  .+++++.|+.|++||+... .+..                      +.+|
T Consensus        91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~----------------------~~~h  147 (319)
T 3frx_A           91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLAT----------------------LLGH  147 (319)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEE----------------------ECCC
T ss_pred             EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEE----------------------Eecc
Confidence            9999999999999999999999999997  8999999999999998632 1111                      1269


Q ss_pred             CCCeEEEEEecC------CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEeccc
Q 046226          194 MGPITSIAINVS------DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYF  266 (434)
Q Consensus       194 ~~~v~~~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~  266 (434)
                      ...|.+++|+|.      +..|++++.|+.|++||+++++....+.+|...|.+++|+|++ +|++++.||.|++||+. 
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~-  226 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA-  226 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT-
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Confidence            999999999985      4589999999999999999999999999999999999999999 99999999999999987 


Q ss_pred             ccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccccc----CcccCcccceEEEEee--CC
Q 046226          267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYG----GALQGHTHAVMCLASV--AN  340 (434)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~~v~~~~~~--~~  340 (434)
                           .......+.. ...+.+++|+|++.+|++++.+ .+++|++..........    .....|...+.+++|+  |+
T Consensus       227 -----~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  299 (319)
T 3frx_A          227 -----AKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ  299 (319)
T ss_dssp             -----TTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred             -----CCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence                 2223334433 4689999999999999988755 59999987543322221    1223456678888885  67


Q ss_pred             EEEEecCCCcEEEEeccCC
Q 046226          341 YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~  359 (434)
                      +|++|+.||.|++||+.++
T Consensus       300 ~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          300 TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEEETTSCEEEEEEEEC
T ss_pred             EEEEeecCceEEEEEEeec
Confidence            9999999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.5e-39  Score=297.89  Aligned_cols=301  Identities=15%  Similarity=0.184  Sum_probs=238.3

Q ss_pred             eeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCceeEeecc-------------CCCccEEEEEEeC-C-
Q 046226           82 YRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFTECGRLK-------------AKTSMVVAMEVSH-D-  143 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~l~~~~-~-  143 (434)
                      .+....+.+|.+.|++++|   ++++|++|+.||.|++||+.+++....+.             +|...|.+++|+| + 
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            3456677889999999999   68999999999999999998876554442             5999999999998 4 


Q ss_pred             -EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---CCEEEEEecCCcEE
Q 046226          144 -RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---DDTLYSASLDKTIK  219 (434)
Q Consensus       144 -~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~  219 (434)
                       .+++++.||.|++||+...+....+                       .+...+.++.+++.   +.++++++.||.|+
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTADVF-----------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ  169 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEEEE-----------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred             cEEEEEeCCCeEEEeeCCCCccceec-----------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence             7999999999999999876554444                       37778999999885   45999999999999


Q ss_pred             EEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcce----------eEEEEEecccccCeE
Q 046226          220 VWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQL----------HTLILTLTAKYSPVK  287 (434)
Q Consensus       220 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~~~~~v~  287 (434)
                      +||+++++.+..+..|...|.+++|+|++  ++++++.||.|++||++.......          .........|...|.
T Consensus       170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence            99999999999999999999999999998  588999999999999973221000          000111246788999


Q ss_pred             EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc--cceEEEEe-eCCEEEEecCCCcEEEEeccCCCceee
Q 046226          288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT--HAVMCLAS-VANYVISGSADSTSRVWAREQDGRHTM  364 (434)
Q Consensus       288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~  364 (434)
                      +++|+|++++|++++.||.|++||+.................  ........ .+..+++++.|+.|++||+.++   ..
T Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~  326 (408)
T 4a11_B          250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQ  326 (408)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CE
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cc
Confidence            999999999999999999999999986554333221111111  11112222 2456777788999999999987   78


Q ss_pred             EEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          365 LAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       365 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      +..+.+|.+.|++++|+|+         +.+|++++.||.|++|++.+++.+.
T Consensus       327 ~~~~~~~~~~v~~~~~s~~---------~~~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          327 ITMLKGHYKTVDCCVFQSN---------FQELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             EEEECCCSSCEEEEEEETT---------TTEEEEEETTSCEEEEEECC-----
T ss_pred             eeeeccCCCeEEEEEEcCC---------CCEEEEECCCCeEEEEeCCCCCccC
Confidence            8899999999999999999         8999999999999999999887654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-39  Score=298.06  Aligned_cols=282  Identities=19%  Similarity=0.296  Sum_probs=237.7

Q ss_pred             EeeccccEEEEEE--cCC-EEEEEeCCCeEEEecC----CCce------eEeeccC----------CCccEEEEEEeCC-
Q 046226           88 VLKKDGQILCIAV--GNG-FIYTGSDSNVIRIWKQ----PEFT------ECGRLKA----------KTSMVVAMEVSHD-  143 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~-~l~tg~~dg~i~iwd~----~~~~------~~~~~~~----------~~~~v~~l~~~~~-  143 (434)
                      ...|.+.|++++|  +++ +|++|+.||.|++||+    .+++      ....+..          |...|.+++|+|+ 
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            4457799999999  788 9999999999999999    8877      4544444          6889999999997 


Q ss_pred             -EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 046226          144 -RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR  222 (434)
Q Consensus       144 -~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  222 (434)
                       .|++++.||.|++||. .+.....+                      ..|...|.+++|+|++++|++++.||.|++||
T Consensus       121 ~~l~~~~~dg~i~i~~~-~~~~~~~~----------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  177 (425)
T 1r5m_A          121 NSIVTGVENGELRLWNK-TGALLNVL----------------------NFHRAPIVSVKWNKDGTHIISMDVENVTILWN  177 (425)
T ss_dssp             SEEEEEETTSCEEEEET-TSCEEEEE----------------------CCCCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEeC-CCCeeeec----------------------cCCCccEEEEEECCCCCEEEEEecCCeEEEEE
Confidence             8999999999999993 33332222                      25999999999999999999999999999999


Q ss_pred             cCCCeeEEEcccCccC---------------eEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeE
Q 046226          223 IRDSKCIETIQAHSEP---------------INALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVK  287 (434)
Q Consensus       223 ~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  287 (434)
                      +.+++.+..+..+...               +.++.|++++.+++++.||.|++||+..      ......+..|...|.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~------~~~~~~~~~~~~~i~  251 (425)
T 1r5m_A          178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITE------KTPTGKLIGHHGPIS  251 (425)
T ss_dssp             TTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTC------SSCSEEECCCSSCEE
T ss_pred             CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCC------CceeeeeccCCCceE
Confidence            9999999998887776               9999999999999999999999999872      223345567889999


Q ss_pred             EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEE
Q 046226          288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLA  366 (434)
Q Consensus       288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (434)
                      +++|+|++++|++++.||.|++||++....    ...+.+|...|.++.|+++ ++++++.|+.|++||+.++   ..+.
T Consensus       252 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~  324 (425)
T 1r5m_A          252 VLEFNDTNKLLLSASDDGTLRIWHGGNGNS----QNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN---TLLA  324 (425)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEECSSSBSC----SEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT---EEEE
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECCCCcc----ceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC---cEeE
Confidence            999999999999999999999999875433    2345578889999999754 9999999999999999987   7888


Q ss_pred             EeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       367 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      .+..|...|.+++|+|+         +.+|++++.||.|++|++.+++
T Consensus       325 ~~~~~~~~i~~~~~s~~---------~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          325 LSIVDGVPIFAGRISQD---------GQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEECTTCCEEEEEECTT---------SSEEEEEETTSCEEEEECHHHH
T ss_pred             ecccCCccEEEEEEcCC---------CCEEEEEECCCeEEEEECCCCc
Confidence            88999999999999999         8999999999999999998765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.4e-38  Score=290.65  Aligned_cols=285  Identities=19%  Similarity=0.243  Sum_probs=233.1

Q ss_pred             eccc--cEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccC-CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCC
Q 046226           90 KKDG--QILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKA-KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNG  164 (434)
Q Consensus        90 ~h~~--~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~  164 (434)
                      +|.+  .+.+++|+++.+++++.|+.|++||+.+++....+.. |...|.+++|+|+  .|++++.||.|++||+..++.
T Consensus        89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  168 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK  168 (401)
T ss_dssp             TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE
Confidence            4544  4666888777788899999999999999988877765 7899999999997  899999999999999987665


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC-CCeeEEEcccCccCeEEEE
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIR-DSKCIETIQAHSEPINALV  243 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~  243 (434)
                      +..+.                      +|...|.+++|+  +++|++|+.||.|++||++ ....+..+..|...|.+++
T Consensus       169 ~~~~~----------------------~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~  224 (401)
T 4aez_A          169 LRTMA----------------------GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA  224 (401)
T ss_dssp             EEEEC----------------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred             EEEec----------------------CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE
Confidence            54442                      699999999994  6799999999999999998 5677888899999999999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC-EEEEEc--CCCeEEEEEcCcccccc
Q 046226          244 VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGGC--TDGYIHYWHKGWFSAQL  319 (434)
Q Consensus       244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~  319 (434)
                      |+|++ +|++++.|+.|++||++      .......+..|...|.+++|+|++. ++++++  .|+.|++||++......
T Consensus       225 ~~~~~~~l~s~~~d~~v~iwd~~------~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~  298 (401)
T 4aez_A          225 WRSDGLQLASGGNDNVVQIWDAR------SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN  298 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETT------CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEccCC------CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence            99999 99999999999999988      2344556678899999999999764 555554  79999999987654333


Q ss_pred             cccCcccCcccceEEEEee--CCEEEE--ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccE
Q 046226          320 QYGGALQGHTHAVMCLASV--ANYVIS--GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT  395 (434)
Q Consensus       320 ~~~~~~~~~~~~v~~~~~~--~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  395 (434)
                      .+     .+...|.++.|+  ++++++  |+.||.|++||+.++. ......+.+|...|.+++|+|+         +.+
T Consensus       299 ~~-----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~~~~~h~~~v~~~~~s~d---------g~~  363 (401)
T 4aez_A          299 TV-----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQVDIPAHDTRVLYSALSPD---------GRI  363 (401)
T ss_dssp             EE-----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEEEEECCSSCCCEEEECTT---------SSE
T ss_pred             EE-----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEEEecCCCCCEEEEEECCC---------CCE
Confidence            22     345678999886  668887  5689999999998852 2455567899999999999999         899


Q ss_pred             EEEeecCCeEEEEecCCCCccccc
Q 046226          396 ICTGSLDGVLKMWRVTRPKSSCGH  419 (434)
Q Consensus       396 l~s~~~Dg~v~iw~~~~~~~~~~~  419 (434)
                      |++++.||.|++|++.+++.....
T Consensus       364 l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          364 LSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEECTTSEEEEEECCC-------
T ss_pred             EEEEeCCCcEEEEECCCCcccccc
Confidence            999999999999999988765543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.5e-40  Score=302.23  Aligned_cols=291  Identities=18%  Similarity=0.257  Sum_probs=242.9

Q ss_pred             CCCCCcccccCCCCCCCCCCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226           46 RFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK  118 (434)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd  118 (434)
                      .....+.+|...+.+..+.+++..+++++.|.+++.|+     ++.++..|...|.+++|  ++++|++|+.|+.|++||
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN  136 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            34567889999999999999999999999999888775     47788999999999999  899999999999999999


Q ss_pred             CCCce-------eEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226          119 QPEFT-------ECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD  188 (434)
Q Consensus       119 ~~~~~-------~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
                      +.+..       ....+.+|.+.|.++.|.|+   .+++|+.|++|++||+.+++.+..+...                 
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-----------------  199 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-----------------  199 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-----------------
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-----------------
Confidence            86532       34557889999999999985   6999999999999999887655443110                 


Q ss_pred             cccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcC-CCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226          189 KMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIR-DSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~  265 (434)
                      ...+|...|.+++|++ ++++|++|+.|+.|++||++ .++.+..+.+|...|.+++|+|++ +|++++.||.|++||++
T Consensus       200 ~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred             cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence            1126999999999987 78999999999999999998 557888899999999999999999 99999999999999998


Q ss_pred             cccCcceeEEEEEeccc-------ccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee
Q 046226          266 FYSENQLHTLILTLTAK-------YSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV  338 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  338 (434)
                      .      ......+..+       ...+.+++|+|++++|++|+.||.|++||+........+.....+|...|.+++|+
T Consensus       280 ~------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s  353 (380)
T 3iz6_a          280 T------GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS  353 (380)
T ss_dssp             T------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC
T ss_pred             C------CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC
Confidence            2      1222222222       23489999999999999999999999999876554444434446899999999986


Q ss_pred             --CCEEEEecCCCcEEEEeccCC
Q 046226          339 --ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       339 --~~~l~s~~~dg~i~iwd~~~~  359 (434)
                        +++|++|+.||.|++|++...
T Consensus       354 ~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          354 SDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             SSSSEEEEECTTSCEEEEECCSS
T ss_pred             CCCCEEEEeeCCCCEEEEecCCC
Confidence              679999999999999999764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-38  Score=283.94  Aligned_cols=263  Identities=21%  Similarity=0.261  Sum_probs=209.6

Q ss_pred             CCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          120 PEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       120 ~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      .+.+.+..+++|...|.+++|+++.|++++.|+.|++||+..+.......+                  ...+|...|.+
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~------------------~~~~h~~~v~~   63 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVL------------------DETAHKKAIRS   63 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEE------------------CTTCCCSCEEE
T ss_pred             cccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEE------------------ecCCccCCEEE
Confidence            345677889999999999999999999999999999999875432111100                  00139999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCC-------CeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226          200 IAINVSDDTLYSASLDKTIKVWRIRD-------SKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ  271 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~  271 (434)
                      ++|+|++++|++|+.|++|++||++.       .+.+..+.+|...|.+++|+|++ +|++|+.|+.|++||++.  ...
T Consensus        64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~--~~~  141 (330)
T 2hes_X           64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE--SGE  141 (330)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT--TCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC--CCC
Confidence            99999999999999999999999853       45677888999999999999999 999999999999999851  222


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC----CEEEEecC
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA----NYVISGSA  347 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~s~~~  347 (434)
                      .......+.+|...|.+++|+|++.+|++++.|+.|++||+....  ......+.+|...|.+++|++    .+|++|+.
T Consensus       142 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~  219 (330)
T 2hes_X          142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD  219 (330)
T ss_dssp             CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred             CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence            334566778899999999999999999999999999999975332  233346779999999999974    38999999


Q ss_pred             CCcEEEEeccCCCc-----eeeEEEeec-cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          348 DSTSRVWAREQDGR-----HTMLAVLVG-HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       348 dg~i~iwd~~~~~~-----~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      |++|++||+..+..     ..+...+.+ |...|.+++|+++          .+|++++.||.|++|++.+++
T Consensus       220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----------~~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN----------GLIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT----------SCEEEEETTSCEEEEEEETTE
T ss_pred             CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC----------CEEEEEeCCCEEEEEEcCCCc
Confidence            99999999975421     134445555 9999999999965          489999999999999987663

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.9e-39  Score=290.52  Aligned_cols=280  Identities=20%  Similarity=0.258  Sum_probs=238.7

Q ss_pred             CCCCCcccccCCCCCCCCCCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226           46 RFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK  118 (434)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd  118 (434)
                      .....+.+|...+.+..+.+++..+++++.|.+++.|+     ....+..|...|.+++|  ++.+|++|+.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            34457889999999999999999999999999988875     56778889999999999  899999999999999998


Q ss_pred             CCCc------eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226          119 QPEF------TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM  190 (434)
Q Consensus       119 ~~~~------~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
                      +...      .....+..|...|.+++|+++  .+++++.|++|++||+.+++.+..+.                     
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~---------------------  193 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH---------------------  193 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---------------------
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc---------------------
Confidence            8543      334556789999999999997  89999999999999998776555442                     


Q ss_pred             cCcCCCeEEEEEec--CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccc
Q 046226          191 MKHMGPITSIAINV--SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFY  267 (434)
Q Consensus       191 ~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~  267 (434)
                       +|...|.+++|+|  ++++|++|+.||.|++||+++++++..+..|...|.+++|+|++ .|++++.|+.|++||++..
T Consensus       194 -~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          194 -GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             -CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             -CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence             6999999999987  46899999999999999999999999999999999999999999 9999999999999998721


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEe
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISG  345 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~  345 (434)
                          ..........+...+.+++|+|++++|++|+.|+.|++||+.....    ...+.+|...|.+++|+  +++|++|
T Consensus       273 ----~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~----~~~l~~h~~~v~~l~~spdg~~l~sg  344 (354)
T 2pbi_B          273 ----REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR----VSILFGHENRVSTLRVSPDGTAFCSG  344 (354)
T ss_dssp             ----EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE----EEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             ----cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce----EEEEECCCCcEEEEEECCCCCEEEEE
Confidence                1111112223345789999999999999999999999999865432    23566899999999996  6699999


Q ss_pred             cCCCcEEEEe
Q 046226          346 SADSTSRVWA  355 (434)
Q Consensus       346 ~~dg~i~iwd  355 (434)
                      +.||.|++|+
T Consensus       345 s~D~~v~vW~  354 (354)
T 2pbi_B          345 SWDHTLRVWA  354 (354)
T ss_dssp             ETTSEEEEEC
T ss_pred             cCCCCEEecC
Confidence            9999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.9e-39  Score=294.45  Aligned_cols=275  Identities=13%  Similarity=0.106  Sum_probs=217.4

Q ss_pred             ccccCCCCCCCCCCCCCccCCCCCCC------ccccee---------eeEEEeeccccEEEEEE-cCCEEEEEeCCCeEE
Q 046226           52 SLHTSPLSSPRHPFNPTAAAGSSSPE------TSSSYR---------CISSVLKKDGQILCIAV-GNGFIYTGSDSNVIR  115 (434)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---------~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~  115 (434)
                      ..|...+.+..++++++.+++++.+.      .+..|+         ......+|.+.|++++| ..+.+++++.||+|+
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~  118 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVE  118 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEE
Confidence            46888899999999999999988743      222222         13345679999999999 455677788999999


Q ss_pred             EecCCCceeEe----eccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccc
Q 046226          116 IWKQPEFTECG----RLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDK  189 (434)
Q Consensus       116 iwd~~~~~~~~----~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (434)
                      |||+.+++...    ...+|...|.+++|+|+  .|++++.|+.|++||+.+++.+..+                     
T Consensus       119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~---------------------  177 (357)
T 4g56_B          119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY---------------------  177 (357)
T ss_dssp             EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE---------------------
T ss_pred             EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------------------
Confidence            99998876543    23479999999999997  8999999999999999876554444                     


Q ss_pred             ccCcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEcc--cCccCeEEEEEcCCC--eEEEEeCCCeEEEEec
Q 046226          190 MMKHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQ--AHSEPINALVVADDG--VLYSASDDATVRVWRR  264 (434)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~  264 (434)
                       .+|...|.+++|++++. ++++++.||.|++||+++++++..+.  .+...+.+++|+|++  +|++|+.|+.|++||+
T Consensus       178 -~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~  256 (357)
T 4g56_B          178 -NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI  256 (357)
T ss_dssp             -CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred             -cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEEC
Confidence             26999999999999875 78999999999999999988766554  467789999999976  7889999999999998


Q ss_pred             ccccCcceeEEEEEecccccCeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee---CC
Q 046226          265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---AN  340 (434)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~  340 (434)
                      +.      ......+..|...|.+++|+|++ ++|++|+.|+.|+|||++..+..     ...+|...|.+++|+   +.
T Consensus       257 ~~------~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~-----~~~~H~~~V~~vafsP~d~~  325 (357)
T 4g56_B          257 KN------PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF-----RDLSHRDFVTGVAWSPLDHS  325 (357)
T ss_dssp             SC------GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE-----EECCCSSCEEEEEECSSSTT
T ss_pred             CC------CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe-----EECCCCCCEEEEEEeCCCCC
Confidence            72      22345567888999999999987 57999999999999998754332     223799999999986   56


Q ss_pred             EEEEecCCCcEEEEeccCC
Q 046226          341 YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~  359 (434)
                      +|++++.||.|++|++...
T Consensus       326 ~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          326 KFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEEEETTSCEEEEECC--
T ss_pred             EEEEEcCCCeEEEEECCCC
Confidence            9999999999999999765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-38  Score=334.94  Aligned_cols=327  Identities=16%  Similarity=0.237  Sum_probs=277.0

Q ss_pred             CcccccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc
Q 046226           50 PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF  122 (434)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~  122 (434)
                      .+.+|...+.+..+++++..+++++.+.++..|     +++.++.+|.+.|.+++|  ++++|++|+.||.|+|||+.++
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~  689 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG  689 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence            456889999999999999999999988876655     457889999999999999  8999999999999999999999


Q ss_pred             eeEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT  198 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  198 (434)
                      +.+..+.+|...|.+++|+++    .+++++.|+.|++||+.++.....+                      .+|...|.
T Consensus       690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~----------------------~~h~~~v~  747 (1249)
T 3sfz_A          690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM----------------------FGHTNSVN  747 (1249)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE----------------------CCCSSCEE
T ss_pred             ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee----------------------cCCCCCEE
Confidence            999999999999999999984    7889999999999999877654443                      26999999


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc---------------------------------------------
Q 046226          199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ---------------------------------------------  233 (434)
Q Consensus       199 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------------------------------------------  233 (434)
                      +++|+|++++|++++.||.|++||+.+++....+.                                             
T Consensus       748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~  827 (1249)
T 3sfz_A          748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH  827 (1249)
T ss_dssp             EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred             EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence            99999999999999999999999998765443321                                             


Q ss_pred             ----------cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226          234 ----------AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       234 ----------~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  302 (434)
                                +|...|.+++|+|++ .+++++.||.|++||+.      .......+.+|...|.+++|+|++++|++++
T Consensus       828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~------~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s  901 (1249)
T 3sfz_A          828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID------SRLKVADCRGHLSWVHGVMFSPDGSSFLTAS  901 (1249)
T ss_dssp             TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT------TTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC------CCceeeecCCCccceEEEEECCCCCEEEEEe
Confidence                      567789999999999 99999999999999987      3445667788999999999999999999999


Q ss_pred             CCCeEEEEEcCcccccccc---------------------------------cCcccCcccceEEEEee--CCEEEEecC
Q 046226          303 TDGYIHYWHKGWFSAQLQY---------------------------------GGALQGHTHAVMCLASV--ANYVISGSA  347 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~~~~---------------------------------~~~~~~~~~~v~~~~~~--~~~l~s~~~  347 (434)
                      .||.|++||+.........                                 ......+...+.+++++  ++++++|+.
T Consensus       902 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~  981 (1249)
T 3sfz_A          902 DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE  981 (1249)
T ss_dssp             TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcC
Confidence            9999999997532111000                                 00001123456777775  679999999


Q ss_pred             CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          348 DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       348 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      ||.|++||+.++   ..+..+.+|...|++++|+|+         +++|++++.||.|++|++.+++..
T Consensus       982 ~g~i~i~d~~~~---~~~~~~~~h~~~v~~l~~s~d---------g~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A          982 DGAIKIIELPNN---RVFSSGVGHKKAVRHIQFTAD---------GKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp             TSCCEEEETTTT---SCEEECCCCSSCCCCEEECSS---------SSCEEEECSSSBEEEEETTTTEEE
T ss_pred             CCCEEEEEcCCC---ceeeecccCCCceEEEEECCC---------CCEEEEEcCCCEEEEEECCCCceE
Confidence            999999999987   677788899999999999999         899999999999999999887543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-39  Score=305.04  Aligned_cols=304  Identities=10%  Similarity=0.077  Sum_probs=217.0

Q ss_pred             CCCccCCCCCCCcccceee---------eEEEeeccccEEEEEE--c------CCEEEEEeCCCeEEEecCCCcee----
Q 046226           66 NPTAAAGSSSPETSSSYRC---------ISSVLKKDGQILCIAV--G------NGFIYTGSDSNVIRIWKQPEFTE----  124 (434)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~---------~~~~~~h~~~v~~~~~--~------~~~l~tg~~dg~i~iwd~~~~~~----  124 (434)
                      +...+++++.|.+++.|+.         ..++.+|.+.|.+++|  +      +++||+|+.||+|+|||+.++..    
T Consensus       172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~  251 (524)
T 2j04_B          172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV  251 (524)
T ss_dssp             ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred             hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence            3445677788888888764         1346678899999999  3      46999999999999999976532    


Q ss_pred             -------EeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCC
Q 046226          125 -------CGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGP  196 (434)
Q Consensus       125 -------~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (434)
                             ...+.+|...|.+++|+++ .|++|+.||+|++||+.++......                     +.+|...
T Consensus       252 ~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~---------------------~~~H~~~  310 (524)
T 2j04_B          252 FKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFY---------------------DQVHDSY  310 (524)
T ss_dssp             EECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEE---------------------EECSSSC
T ss_pred             ceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEE---------------------eeccccc
Confidence                   2367789999999999876 8999999999999999865322111                     1269999


Q ss_pred             eEEE--EEecCC-CEEEEEecCCcEEEEEcCCCeeEEEcccCcc--CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCc
Q 046226          197 ITSI--AINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQAHSE--PINALVVADDG-VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       197 v~~~--~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      |.+|  +|++++ .+|++|+.|++|++||+++++++..+.+|..  .|.+++|+|++ .+++++.|+.|++||++..   
T Consensus       311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---  387 (524)
T 2j04_B          311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---  387 (524)
T ss_dssp             EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---
T ss_pred             EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---
Confidence            9999  567887 8999999999999999999887777766653  58899999988 8999999999999998821   


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC-----cccceEEEEee--CCEEE
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG-----HTHAVMCLASV--ANYVI  343 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~v~~~~~~--~~~l~  343 (434)
                         .....+.+|...|.+++|+|++++|++|+.||+|++||+...     .......     +...+..++++  ++.+ 
T Consensus       388 ---~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-----~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-  458 (524)
T 2j04_B          388 ---FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-----LLHGIKNSSATQKSLRLWKWDYSIKDDKY-  458 (524)
T ss_dssp             ---TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-----TTTCC------CCCCEEEECBCCSSSCEE-
T ss_pred             ---ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-----hccccccCccceeeeEEEEeccCCCCCeE-
Confidence               122345579999999999999999999999999999997532     1111111     11245677665  3433 


Q ss_pred             EecCCCcEEEEecc-CCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          344 SGSADSTSRVWARE-QDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       344 s~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      ....  .+++|+.. ++   .++..+.+|...|.+++|+|+.      +.+..+++|+.||.|+||++.-.
T Consensus       459 ~~~~--~~~~~~~~~~g---~~~~~l~gh~~~V~~Vafsp~~------~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          459 RIDS--SYEVYPLTVND---VSKAKIDAHGINITCTKWNETS------AGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             EECC--CCCCCC----------------CCCSCCCEEECCST------TTTTEEEEECTTSEEEEEECSCC
T ss_pred             EccC--CceecccccCC---cceeeecCCCceEEEEECCCCC------CccHHHHhhccCceEEEEEcccc
Confidence            2222  23344332 22   5777889999999999999982      11349999999999999998743

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4e-38  Score=278.61  Aligned_cols=253  Identities=18%  Similarity=0.228  Sum_probs=207.2

Q ss_pred             eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCC--CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226          126 GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDN--GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA  201 (434)
Q Consensus       126 ~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  201 (434)
                      ..+.+|...|.+++|+++  +|++|+.|++|++||+....  .+..                      +.+|.++|.+++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~----------------------l~gH~~~V~~v~   60 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDT----------------------LTGHEGPVWRVD   60 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEE----------------------ECCCSSCEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEE----------------------EccccCCeEEEE
Confidence            456789999999999997  89999999999999986432  1222                      237999999999


Q ss_pred             EecC--CCEEEEEecCCcEEEEEcCCCe--eEEEcccCccCeEEEEEcCC--C-eEEEEeCCCeEEEEecccccCcceeE
Q 046226          202 INVS--DDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADD--G-VLYSASDDATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       202 ~~~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~  274 (434)
                      |+++  +++|++|+.|++|++||+++++  .+..+..|...|.+++|+|+  + +|++++.|+.|++||++....  .  
T Consensus        61 ~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--~--  136 (297)
T 2pm7_B           61 WAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--T--  136 (297)
T ss_dssp             ECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC--B--
T ss_pred             ecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc--e--
Confidence            9863  8999999999999999998874  56677889999999999997  6 999999999999999872211  1  


Q ss_pred             EEEEecccccCeEEEEEecC-------------CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--
Q 046226          275 LILTLTAKYSPVKTLTLTLD-------------DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--  339 (434)
Q Consensus       275 ~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  339 (434)
                      ....+.+|...|.+++|+|+             +++|++|+.|+.|++||++...........+.+|...|.+++|++  
T Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC
T ss_pred             eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC
Confidence            12345678899999999996             579999999999999998755433334456779999999999974  


Q ss_pred             ---CEEEEecCCCcEEEEeccCCCceeeEEEe--eccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          340 ---NYVISGSADSTSRVWAREQDGRHTMLAVL--VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       340 ---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                         .+|++++.|++|+|||++..........+  ..|...|.+++|+|+         +++|++++.||.|++|+....
T Consensus       217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS---------GNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS---------SCCEEEEETTSCEEEEEECTT
T ss_pred             CCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC---------CCEEEEEcCCCcEEEEEECCC
Confidence               58999999999999999875321122233  578899999999999         899999999999999998743

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2e-38  Score=286.62  Aligned_cols=283  Identities=16%  Similarity=0.192  Sum_probs=228.7

Q ss_pred             CCcccccCCCCCCCC-----C-CCCCccCCCCCCCcccceee------------eEEEeeccccEEEEEE--cCCEEEEE
Q 046226           49 SPISLHTSPLSSPRH-----P-FNPTAAAGSSSPETSSSYRC------------ISSVLKKDGQILCIAV--GNGFIYTG  108 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~h~~~v~~~~~--~~~~l~tg  108 (434)
                      ..+.+|...+.+..+     . .++..+++++.|.+++.|+.            ...+.+|.+.|.+++|  ++.+|++|
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~   94 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS   94 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence            456788888877754     3 37888999999999888864            4568899999999999  88999999


Q ss_pred             eCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226          109 SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG  186 (434)
Q Consensus       109 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
                      +.|++|++||+.+++.+..+.+|...|.+++|+|+  .+++++.|+.|++||+.... ....                  
T Consensus        95 s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~------------------  155 (343)
T 2xzm_R           95 SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSS------------------  155 (343)
T ss_dssp             ETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEEC------------------
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeee------------------
Confidence            99999999999999999999999999999999997  89999999999999986321 1100                  


Q ss_pred             cccccCcCCCeEEEEEecCC----------CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC
Q 046226          187 KDKMMKHMGPITSIAINVSD----------DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD  255 (434)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~~~----------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~  255 (434)
                       ....+|...|.+++|+|++          .+|++++.||.|++|| ...+....+.+|...|.+++|+|++ +|++|+.
T Consensus       156 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~  233 (343)
T 2xzm_R          156 -AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGK  233 (343)
T ss_dssp             -CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             -ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence             0112588999999999986          7899999999999999 4567778889999999999999999 9999999


Q ss_pred             CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc--ccc-------Cccc
Q 046226          256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL--QYG-------GALQ  326 (434)
Q Consensus       256 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~-------~~~~  326 (434)
                      ||.|++||+....  ...   ..+ .+...|.+++|+|++.+++++ .|+.|++||+.......  .+.       ....
T Consensus       234 dg~v~iwd~~~~~--~~~---~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  306 (343)
T 2xzm_R          234 DKKLLIWDILNLT--YPQ---REF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK  306 (343)
T ss_dssp             TCEEEEEESSCCS--SCS---EEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred             CCeEEEEECCCCc--ccc---eee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence            9999999985211  111   111 234579999999999887655 57889999987543322  111       1123


Q ss_pred             CcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          327 GHTHAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       327 ~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      +|...|.+++|+  +++|++|+.||.|++|+++++
T Consensus       307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            688889999986  679999999999999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.2e-37  Score=302.12  Aligned_cols=331  Identities=13%  Similarity=0.110  Sum_probs=262.6

Q ss_pred             CCCCCcccccCC-CCCCCCCC--CCCccCCCCCCCcccceee-------------eEEEeeccccEEEEEE--cCCEEEE
Q 046226           46 RFSSPISLHTSP-LSSPRHPF--NPTAAAGSSSPETSSSYRC-------------ISSVLKKDGQILCIAV--GNGFIYT  107 (434)
Q Consensus        46 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------------~~~~~~h~~~v~~~~~--~~~~l~t  107 (434)
                      +....+.+|... +.+..+.+  ++..+++++.+..+..|+.             +..+..|.+.|.+++|  ++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            455677889988 99999999  9999999999988777665             3456779999999999  8999999


Q ss_pred             EeCC----CeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCce
Q 046226          108 GSDS----NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAV  180 (434)
Q Consensus       108 g~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      ++.+    +.|++||  .++.+..+..|...|.+++|+|+   .+++++.|+.|++||+...+....+            
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~------------  199 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD------------  199 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE------------
T ss_pred             eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee------------
Confidence            9988    7999998  56788889999999999999997   6999999999999998765444333            


Q ss_pred             eEEEeccccccCcCC---CeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEc-c---cCccCeEEEEEcCCC-eEE
Q 046226          181 RNLIVGKDKMMKHMG---PITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETI-Q---AHSEPINALVVADDG-VLY  251 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~-~l~  251 (434)
                                .+|..   .|.+++|+|+ +++|++++.||.|++||+.+++.+..+ .   .|...|.+++|+ ++ +|+
T Consensus       200 ----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~  268 (615)
T 1pgu_A          200 ----------RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA  268 (615)
T ss_dssp             ----------CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred             ----------cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEE
Confidence                      25888   9999999999 999999999999999999999999999 6   899999999999 77 999


Q ss_pred             EEeCCCeEEEEecccccCcc---------------------------------------eeEEEEEecccccCeEEEEEe
Q 046226          252 SASDDATVRVWRRYFYSENQ---------------------------------------LHTLILTLTAKYSPVKTLTLT  292 (434)
Q Consensus       252 s~~~dg~i~iwd~~~~~~~~---------------------------------------~~~~~~~~~~~~~~v~~~~~~  292 (434)
                      +++.|+.|++||++......                                       .......+..|...|.+++| 
T Consensus       269 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-  347 (615)
T 1pgu_A          269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-  347 (615)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-
Confidence            99999999999986221000                                       01222333344444444433 


Q ss_pred             c---------------------------------CCCEEEEEcCCCeEEEEEcCcccc----------------------
Q 046226          293 L---------------------------------DDGLLYGGCTDGYIHYWHKGWFSA----------------------  317 (434)
Q Consensus       293 ~---------------------------------~~~~l~~~~~dg~i~i~d~~~~~~----------------------  317 (434)
                      |                                 ++..|++++.|+.|++||+.....                      
T Consensus       348 ~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  427 (615)
T 1pgu_A          348 NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD  427 (615)
T ss_dssp             TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTS
T ss_pred             cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCC
Confidence            2                                 244555555555555555432100                      


Q ss_pred             ------------------------------------------------ccccc-CcccCcccceEEEEee--CCEEEEec
Q 046226          318 ------------------------------------------------QLQYG-GALQGHTHAVMCLASV--ANYVISGS  346 (434)
Q Consensus       318 ------------------------------------------------~~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~  346 (434)
                                                                      ..... ..+.+|...|.+++|+  +++|++++
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  507 (615)
T 1pgu_A          428 DLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD  507 (615)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC
Confidence                                                            00000 3456788899999995  67999999


Q ss_pred             CCCcEEEEeccCCCceeeEEEeec-cccceeEEEEee----------cccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          347 ADSTSRVWAREQDGRHTMLAVLVG-HRGPIRCAIAFL----------GRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~----------~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      .||.|++||+.++   +.+..+.+ |...|++++|+|          +         +.+|++++.||.|++|++.++.
T Consensus       508 ~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~---------~~~l~~~~~dg~i~iw~~~~~~  574 (615)
T 1pgu_A          508 VMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIE---------EDLVATGSLDTNIFIYSVKRPM  574 (615)
T ss_dssp             TTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC------CCS---------CCEEEEEETTSCEEEEESSCTT
T ss_pred             CCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCccccccccccC---------CCEEEEEcCCCcEEEEECCCCc
Confidence            9999999999987   77788888 999999999999          7         8999999999999999999873

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-37  Score=274.34  Aligned_cols=260  Identities=15%  Similarity=0.158  Sum_probs=209.8

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC--ceeEeeccCCCccEEEEEEeC----CEEEEEEcCCeEEE
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE--FTECGRLKAKTSMVVAMEVSH----DRVYAAYGDGKIRV  156 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~~~----~~l~~~s~dg~i~v  156 (434)
                      +..+.+|.+.|++++|  +|++||+|+.|++|+|||+.+  .+.+..+.+|...|.+++|++    +.|++++.|++|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            3457789999999999  899999999999999999874  467788999999999999974    38999999999999


Q ss_pred             eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC--CCEEEEEecCCcEEEEEcCCCe--eEEEc
Q 046226          157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS--DDTLYSASLDKTIKVWRIRDSK--CIETI  232 (434)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~  232 (434)
                      ||+..+.......                    +.+|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+
T Consensus        82 Wd~~~~~~~~~~~--------------------~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~  141 (297)
T 2pm7_B           82 WKEENGRWSQIAV--------------------HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII  141 (297)
T ss_dssp             EEBSSSCBCCCEE--------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred             EEcCCCceEEEEE--------------------eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee
Confidence            9997653211111                    1258999999999997  8899999999999999998763  24567


Q ss_pred             ccCccCeEEEEEcCC-------------C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC---
Q 046226          233 QAHSEPINALVVADD-------------G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD---  295 (434)
Q Consensus       233 ~~~~~~v~~~~~~~~-------------~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---  295 (434)
                      .+|...|.+++|+|+             + +|++|+.|+.|++||++  ...........+.+|...|.+++|+|++   
T Consensus       142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~--~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~  219 (297)
T 2pm7_B          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN--SDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (297)
T ss_dssp             ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEE--TTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEc--CCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence            789999999999986             3 89999999999999987  2233344566788999999999999984   


Q ss_pred             CEEEEEcCCCeEEEEEcCccccccc-ccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEE
Q 046226          296 GLLYGGCTDGYIHYWHKGWFSAQLQ-YGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLA  366 (434)
Q Consensus       296 ~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (434)
                      .+|++++.|+.|++||++....... .......|...|.+++|+  +++|++++.||.|++|+....+.+.++.
T Consensus       220 ~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~~  293 (297)
T 2pm7_B          220 SYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAG  293 (297)
T ss_dssp             EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC-
T ss_pred             eEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEecc
Confidence            8999999999999999875322111 111124677889999886  6799999999999999987554444443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.1e-38  Score=289.19  Aligned_cols=279  Identities=20%  Similarity=0.339  Sum_probs=231.1

Q ss_pred             cccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeecc------------------ccEEEEEE--cCCEEEE
Q 046226           53 LHTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKD------------------GQILCIAV--GNGFIYT  107 (434)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~------------------~~v~~~~~--~~~~l~t  107 (434)
                      .|...+.+..+++++..+++++ +..+..|     +.+..+..|.                  ..|.+++|  ++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            5889999999999999998876 4444433     4455565543                  24999999  8999999


Q ss_pred             EeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226          108 GSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV  185 (434)
Q Consensus       108 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
                      |+.|+.|+|||+.+++.+..+.+|...|.+++|+|+  .|++++.|+.|++||+.+++....+                 
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----------------  203 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-----------------  203 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----------------
Confidence            999999999999999999999999999999999997  8999999999999999876544333                 


Q ss_pred             ccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEc-------ccCccCeEEEEEcCCC-eEEEEeCC
Q 046226          186 GKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETI-------QAHSEPINALVVADDG-VLYSASDD  256 (434)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~-~l~s~~~d  256 (434)
                            .+...+.+++|+| ++++|++|+.||.|++||+++++.+..+       .+|...|.+++|+|++ +|++++.|
T Consensus       204 ------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d  277 (393)
T 1erj_A          204 ------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  277 (393)
T ss_dssp             ------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence                  3667899999999 8999999999999999999999887776       5789999999999999 99999999


Q ss_pred             CeEEEEecccccCc------ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCccc
Q 046226          257 ATVRVWRRYFYSEN------QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH  330 (434)
Q Consensus       257 g~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  330 (434)
                      +.|++||++.....      ........+.+|...|.+++|++++.+|++|+.||.|++||+.....    ...+.+|..
T Consensus       278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~----~~~l~~h~~  353 (393)
T 1erj_A          278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP----LLMLQGHRN  353 (393)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE----EEEEECCSS
T ss_pred             CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE----EEEECCCCC
Confidence            99999998732211      11233456678999999999999999999999999999999875433    235678999


Q ss_pred             ceEEEEee--------CCEEEEecCCCcEEEEeccCC
Q 046226          331 AVMCLASV--------ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       331 ~v~~~~~~--------~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      .|.++++.        +++|++|+.||.|+||++...
T Consensus       354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            99999985        458999999999999998753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-39  Score=296.55  Aligned_cols=286  Identities=13%  Similarity=0.200  Sum_probs=234.8

Q ss_pred             ccccEEEEEE--cCC-EEEEE----------eCCCeEEEecCCCce---eEeeccCCCccEEEEEEeCC--EEEEEEcCC
Q 046226           91 KDGQILCIAV--GNG-FIYTG----------SDSNVIRIWKQPEFT---ECGRLKAKTSMVVAMEVSHD--RVYAAYGDG  152 (434)
Q Consensus        91 h~~~v~~~~~--~~~-~l~tg----------~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg  152 (434)
                      +...|.+++|  +++ +|++|          +.|+.|+|||+.++.   .+..+ .|...|.+++|+|+  .|++++.||
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            4456888999  665 99999          899999999998875   33333 58899999999997  899999999


Q ss_pred             eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCe----
Q 046226          153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSK----  227 (434)
Q Consensus       153 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~----  227 (434)
                      .|++||+.........           +.       .+.+|...|.+++|+|+ +++|++++.||.|++||+.+++    
T Consensus        90 ~v~vw~~~~~~~~~~~-----------~~-------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  151 (416)
T 2pm9_A           90 SLELYSTNEANNAINS-----------MA-------RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS  151 (416)
T ss_dssp             CEEEECCSSTTSCCCE-----------EE-------ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred             eEEEeecccccccccc-----------hh-------hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence            9999999762111000           00       12369999999999998 8999999999999999999876    


Q ss_pred             --eEE---EcccCccCeEEEEEcCC-C-eEEEEeCCCeEEEEecccccCcceeEEEEEeccc------ccCeEEEEEecC
Q 046226          228 --CIE---TIQAHSEPINALVVADD-G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK------YSPVKTLTLTLD  294 (434)
Q Consensus       228 --~~~---~~~~~~~~v~~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~  294 (434)
                        ...   .+..|...|.+++|+|+ + ++++++.|+.|++||++      .......+..+      ...+.+++|+|+
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  225 (416)
T 2pm9_A          152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK------AKKEVIHLSYTSPNSGIKQQLSVVEWHPK  225 (416)
T ss_dssp             TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT------TTEEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred             cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC------CCCcceEEeccccccccCCceEEEEECCC
Confidence              333   34678999999999998 4 89999999999999987      22334444444      788999999998


Q ss_pred             C-CEEEEEcCCC---eEEEEEcCcccccccccCccc-CcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEE
Q 046226          295 D-GLLYGGCTDG---YIHYWHKGWFSAQLQYGGALQ-GHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLA  366 (434)
Q Consensus       295 ~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (434)
                      + .++++++.|+   .|++||++....   ....+. +|...|.+++|+   +++|++++.||.|++||++++   +.+.
T Consensus       226 ~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~  299 (416)
T 2pm9_A          226 NSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLS  299 (416)
T ss_dssp             CTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEE
T ss_pred             CCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccce
Confidence            7 6899999998   999999975432   233455 789999999985   569999999999999999987   7888


Q ss_pred             EeeccccceeEEEEeecccCCCCCCcc-cEEEEeecCCeEEEEecCCCCcc
Q 046226          367 VLVGHRGPIRCAIAFLGRFGEETEDEY-CTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       367 ~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      .+.+|...|.+++|+|+         + .+|++++.||.|++|++.+.+..
T Consensus       300 ~~~~~~~~v~~~~~s~~---------~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          300 QFPARGNWCFKTKFAPE---------APDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EEECSSSCCCCEEECTT---------CTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             eecCCCCceEEEEECCC---------CCCEEEEEecCCcEEEEEccCCCCC
Confidence            89999999999999998         6 89999999999999999987653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.8e-37  Score=288.29  Aligned_cols=279  Identities=18%  Similarity=0.235  Sum_probs=227.9

Q ss_pred             ccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeec--cCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCcee
Q 046226           93 GQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRL--KAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        93 ~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      -.+.+|+| .+++|++|. |++|+|||..+++....+  ..|...|++|+|+|+  .|++|+.||.|++||+.+++.+..
T Consensus       106 ~y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          106 YYLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TTCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ccceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            45788999 677888876 899999999999877655  467888999999997  899999999999999987765544


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEEEEEcC
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVVAD  246 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~  246 (434)
                      +                      .+|...+.+++++  +.+|++|+.|+.+++||.... ..+..+.+|...+..+.+++
T Consensus       185 ~----------------------~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          185 M----------------------TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             E----------------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             E----------------------eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence            4                      2699999988875  789999999999999998764 56678889999999999999


Q ss_pred             CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC-EEEE--EcCCCeEEEEEcCccccccccc
Q 046226          247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG-LLYG--GCTDGYIHYWHKGWFSAQLQYG  322 (434)
Q Consensus       247 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~  322 (434)
                      ++ .+++++.|+.+++||....  ............|...|.+++|+|.+. ++++  |+.|+.|++||+.+......  
T Consensus       241 ~g~~l~s~~~D~~v~i~~~~~~--~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~--  316 (420)
T 4gga_A          241 DGRHLASGGNDNLVNVWPSAPG--EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA--  316 (420)
T ss_dssp             TSSEEEEEETTSCEEEEESSCC--SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE--
T ss_pred             CCCeeeeeeccccceEEeeccc--cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee--
Confidence            99 9999999999999998732  222233455677889999999999654 4544  46799999999876544332  


Q ss_pred             CcccCcccceEEEEee--CCEEEEe--cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEE
Q 046226          323 GALQGHTHAVMCLASV--ANYVISG--SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICT  398 (434)
Q Consensus       323 ~~~~~~~~~v~~~~~~--~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s  398 (434)
                        +..| ..+.++.+.  ++.++++  +.|+.|+|||+.++   +++..+.+|.+.|++++|+|+         |.+|+|
T Consensus       317 --~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~spd---------g~~l~S  381 (420)
T 4gga_A          317 --VDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPD---------GATVAS  381 (420)
T ss_dssp             --EECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTT---------SSCEEE
T ss_pred             --eccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCC---------CCEEEE
Confidence              2233 456677665  5566554  47999999999987   788999999999999999999         899999


Q ss_pred             eecCCeEEEEecCCCCc
Q 046226          399 GSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       399 ~~~Dg~v~iw~~~~~~~  415 (434)
                      |+.||+|+|||+.+..+
T Consensus       382 ~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          382 AAADETLRLWRCFELDP  398 (420)
T ss_dssp             EETTTEEEEECCSCSSC
T ss_pred             EecCCeEEEEECCCCCc
Confidence            99999999999986543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.6e-37  Score=291.28  Aligned_cols=329  Identities=18%  Similarity=0.303  Sum_probs=259.3

Q ss_pred             CCCcccccCCCCCCCCCCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCC
Q 046226           48 SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPE  121 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~  121 (434)
                      ...+.+|...+... ..+++..+++++.+.+++.|+     ++..+.+|.+.|++++| .+.+|++|+.||+|++||+.+
T Consensus       114 ~~~l~~h~~~v~~~-~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~  192 (464)
T 3v7d_B          114 RTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK  192 (464)
T ss_dssp             EEEEECCSSSCEEE-EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTT
T ss_pred             eEEEcCCCCCcEEE-EEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCC
Confidence            34567777665322 233567889999888876654     68889999999999999 555999999999999999999


Q ss_pred             ceeEeeccCCCccEEEEEEeC--C--EEEEEEcCCeEEEeecCCCCCceeeEeee-------ccCCCCceeEEEeccccc
Q 046226          122 FTECGRLKAKTSMVVAMEVSH--D--RVYAAYGDGKIRVWRSTWDNGVKHVKLAT-------IPKTGGAVRNLIVGKDKM  190 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~--~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  190 (434)
                      ++.+..+.+|...|.+++|++  +  .+++++.||.|++||+.............       .+.......      ..+
T Consensus       193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  266 (464)
T 3v7d_B          193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV------GVL  266 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE------EEE
T ss_pred             CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE------EEc
Confidence            999999999999999999984  3  79999999999999998765443221100       000000000      123


Q ss_pred             cCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccC
Q 046226          191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSE  269 (434)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~  269 (434)
                      .+|...|.++  +++++++++|+.||.|++||+.+++++..+.+|...|.+++|+|++ .+++++.||.|++||++    
T Consensus       267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~----  340 (464)
T 3v7d_B          267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE----  340 (464)
T ss_dssp             CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT----
T ss_pred             cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----
Confidence            4688888887  5679999999999999999999999999999999999999999998 99999999999999987    


Q ss_pred             cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCC
Q 046226          270 NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADS  349 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg  349 (434)
                        .......+.+|...|.+++++  +.+|++++.||.|++||++........   ...+...+.++..+++++++|+ ||
T Consensus       341 --~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          341 --NGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---HHTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             --TTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             --CCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---cCCCCccEEEEEeCCCEEEEec-CC
Confidence              345667788899999999997  589999999999999999765433322   1233445567777889999998 89


Q ss_pred             cEEEEeccCCCceeeEEE-eeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          350 TSRVWAREQDGRHTMLAV-LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                      .|++||++++   +.+.. +.+|.+.|.+++|+.          ..++++++.||.+.+|-+
T Consensus       413 ~i~iwd~~~g---~~~~~~~~~~~~~v~~v~~~~----------~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          413 QFNIYNLRSG---KLVHANILKDADQIWSVNFKG----------KTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             EEEEEETTTC---CEEESCTTTTCSEEEEEEEET----------TEEEEEEEETTEEEEEEE
T ss_pred             eEEEEECCCC---cEEehhhccCCCcEEEEEecC----------CEEEEEEEeCCeEEEEEe
Confidence            9999999998   56654 678899999999973          457777778887766644

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-38  Score=316.31  Aligned_cols=341  Identities=10%  Similarity=0.051  Sum_probs=258.8

Q ss_pred             ccccCCCCCCCCCCCCCccCCCCCCCcccceeee----EEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEe
Q 046226           52 SLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCI----SSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECG  126 (434)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~  126 (434)
                      .+|...+.+..+.+++..+++++.+.+++.|...    .....|.+.|.+++| .+++|++++.|++|+|||+.+++.+.
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~   93 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLT   93 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEE
Confidence            4677888899999999999999999988877531    223458889999999 67799999999999999999999888


Q ss_pred             eccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec
Q 046226          127 RLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV  204 (434)
Q Consensus       127 ~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  204 (434)
                      .+. |...|++++|+|+  .+++|+.||.|++||+...... .+.+....          .......+|.+.|.+++|+|
T Consensus        94 ~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~----------~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           94 TVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQ----------KSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             EEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHH----------HHHTCSSSCCCCCCEEEEET
T ss_pred             EEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccc----------ccccccccCCCCeEEEEEcc
Confidence            886 6688999999997  8999999999999999865432 11110000          00012246999999999999


Q ss_pred             C-CCEEEEEecCCcEEEEEcCCCeeEEEcccC------------------ccCeEEEEEcCCC-eEEEEeCCCeEEEEec
Q 046226          205 S-DDTLYSASLDKTIKVWRIRDSKCIETIQAH------------------SEPINALVVADDG-VLYSASDDATVRVWRR  264 (434)
Q Consensus       205 ~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~  264 (434)
                      + +..|++|+.||.| +||+++++++..+..|                  ...|.+++|+|++ +|++++.||.|++||+
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            6 5789999999999 9999999988888765                  4779999999999 9999999999999998


Q ss_pred             ccccC-------------------------c-ce-------------eEEEE--------------Eec-----------
Q 046226          265 YFYSE-------------------------N-QL-------------HTLIL--------------TLT-----------  280 (434)
Q Consensus       265 ~~~~~-------------------------~-~~-------------~~~~~--------------~~~-----------  280 (434)
                      +....                         . ..             ...+.              .+.           
T Consensus       241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s  320 (902)
T 2oaj_A          241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS  320 (902)
T ss_dssp             TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred             CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence            52110                         0 00             00000              000           


Q ss_pred             -------------------c-----------------------------------------------------------c
Q 046226          281 -------------------A-----------------------------------------------------------K  282 (434)
Q Consensus       281 -------------------~-----------------------------------------------------------~  282 (434)
                                         .                                                           |
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~  400 (902)
T 2oaj_A          321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL  400 (902)
T ss_dssp             HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred             hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence                               0                                                           0


Q ss_pred             ccCeEEE----------------------------------EEecCCCEEEEEcCCCeEEEEEcCccccccc--ccCcc-
Q 046226          283 YSPVKTL----------------------------------TLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ--YGGAL-  325 (434)
Q Consensus       283 ~~~v~~~----------------------------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~-  325 (434)
                      ...|+++                                  +|+|++++|++|+.|++|++||+........  +...+ 
T Consensus       401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~  480 (902)
T 2oaj_A          401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS  480 (902)
T ss_dssp             TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred             CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence            0112222                                  2356778899999999999999875532110  00001 


Q ss_pred             ----cCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCc--------------------------------------
Q 046226          326 ----QGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGR--------------------------------------  361 (434)
Q Consensus       326 ----~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--------------------------------------  361 (434)
                          .+|...|.+++|+  +++||+|+.||+|+|||+.++..                                      
T Consensus       481 ~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (902)
T 2oaj_A          481 RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG  560 (902)
T ss_dssp             HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred             hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence                2788899999987  67999999999999999986521                                      


Q ss_pred             ----eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          362 ----HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       362 ----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                          .+++..+.+|.+.|++++|+|+         | +||+|+.||+|++||++.+..
T Consensus       561 ~~~g~~~~~~l~~h~~~V~svafSpd---------G-~lAsgs~D~tv~lwd~~~~~~  608 (902)
T 2oaj_A          561 VRQGFMPSTAVHANKGKTSAINNSNI---------G-FVGIAYAAGSLMLIDRRGPAI  608 (902)
T ss_dssp             CSEEEEEEEEECCCSCSEEEEEECBT---------S-EEEEEETTSEEEEEETTTTEE
T ss_pred             CCCccceeEEEEcCCCcEEEEEecCC---------c-EEEEEeCCCcEEEEECCCCeE
Confidence                1357788899999999999999         9 999999999999999887654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-38  Score=295.27  Aligned_cols=276  Identities=18%  Similarity=0.205  Sum_probs=222.9

Q ss_pred             EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226           95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKL  170 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~  170 (434)
                      +++++|  ++++|++|+.||.|++||+.+++....+..| ..+....|+++  .|++++.||.|++||+..+.....+  
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--  135 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID--  135 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET--
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec--
Confidence            346777  8999999999999999999988877777666 33444466765  8999999999999998755433222  


Q ss_pred             eeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-e
Q 046226          171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-V  249 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~  249 (434)
                                          .+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ +
T Consensus       136 --------------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  195 (420)
T 3vl1_A          136 --------------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN  195 (420)
T ss_dssp             --------------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE
T ss_pred             --------------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE
Confidence                                2699999999999999999999999999999999999999999999999999999999 9


Q ss_pred             EEEEeCCCeEEEEecccccCcceeEEEEEec---ccc---------------------cCeEEEEEecCCCEEEEEcCCC
Q 046226          250 LYSASDDATVRVWRRYFYSENQLHTLILTLT---AKY---------------------SPVKTLTLTLDDGLLYGGCTDG  305 (434)
Q Consensus       250 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~---------------------~~v~~~~~~~~~~~l~~~~~dg  305 (434)
                      |++++.|+.|++||++.      ......+.   .+.                     ..+.+++|+|++++|++|+.||
T Consensus       196 l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  269 (420)
T 3vl1_A          196 VLSASLDGTIRLWECGT------GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG  269 (420)
T ss_dssp             EEEEETTSCEEEEETTT------TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred             EEEEcCCCcEEEeECCC------CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence            99999999999999872      22223332   233                     3444555678899999999999


Q ss_pred             eEEEEEcCcccccccccCcccCcccceEEEEeeC--C-EEEEecCCCcEEEEeccCCCceeeEEEeec-cccceeEEEEe
Q 046226          306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--N-YVISGSADSTSRVWAREQDGRHTMLAVLVG-HRGPIRCAIAF  381 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~  381 (434)
                      .|++||++........   ...|...|.+++|++  . +|++|+.||.|++||++++.  .++..+.+ |...|.++.+ 
T Consensus       270 ~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~-  343 (420)
T 3vl1_A          270 VITVHNVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF-  343 (420)
T ss_dssp             CEEEEETTTCCEEEEE---CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE-
T ss_pred             eEEEEECCCCceeEEc---ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe-
Confidence            9999999765443332   346788999999974  4 99999999999999999863  33555655 6677887755 


Q ss_pred             ecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          382 LGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       382 ~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      ++         +.+|++++.||.|++|++..+.
T Consensus       344 ~~---------~~~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          344 AA---------GALFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             ET---------TEEEEEETTTEEEEEEEECCTT
T ss_pred             CC---------CCEEEEecCCccEEEEeccCCC
Confidence            45         7799999999999999998753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.1e-38  Score=280.38  Aligned_cols=262  Identities=16%  Similarity=0.144  Sum_probs=206.3

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce--eEeeccCCCccEEEEEEeC----CEEEEEEcCCeEEEeec
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT--ECGRLKAKTSMVVAMEVSH----DRVYAAYGDGKIRVWRS  159 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~----~~l~~~s~dg~i~vwd~  159 (434)
                      +.+|.+.|++++|  +|++|++|+.|++|+|||+.++.  .+..+.+|...|.+++|++    +.|++++.|++|++||+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence            5689999999999  89999999999999999998764  4677899999999999974    38999999999999998


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC--CCEEEEEecCCcEEEEEcCCCe---eEEEccc
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS--DDTLYSASLDKTIKVWRIRDSK---CIETIQA  234 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~  234 (434)
                      ..+.......                    +.+|...|.+++|+|+  +.+|++|+.|+.|++||++.+.   ....+.+
T Consensus        89 ~~~~~~~~~~--------------------~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~  148 (316)
T 3bg1_A           89 ENGTWEKSHE--------------------HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA  148 (316)
T ss_dssp             SSSCCCEEEE--------------------ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred             CCCcceEEEE--------------------ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence            7653221111                    1269999999999998  7899999999999999998763   2456678


Q ss_pred             CccCeEEEEEcCC-----------------C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC-
Q 046226          235 HSEPINALVVADD-----------------G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-  295 (434)
Q Consensus       235 ~~~~v~~~~~~~~-----------------~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  295 (434)
                      |...|.+++|+|+                 + +|++|+.|+.|++||++   ..........+.+|...|.+++|+|++ 
T Consensus       149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~---~~~~~~~~~~l~~h~~~V~~v~~sp~~~  225 (316)
T 3bg1_A          149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE---EDGQWKEEQKLEAHSDWVRDVAWAPSIG  225 (316)
T ss_dssp             SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC---TTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred             ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeC---CCCccceeeecccCCCceEEEEecCCCC
Confidence            9999999999987                 3 79999999999999986   122234556778899999999999986 


Q ss_pred             ---CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeec
Q 046226          296 ---GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVG  370 (434)
Q Consensus       296 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (434)
                         .+|++++.||+|++||++...........+..|...|.+++|+  +++|++++.|+.|++|+....+...++..+..
T Consensus       226 ~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~  305 (316)
T 3bg1_A          226 LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNK  305 (316)
T ss_dssp             CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC-
T ss_pred             CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeeccC
Confidence               8899999999999999875321111112345678899999987  66999999999999999875555556655554


Q ss_pred             cc
Q 046226          371 HR  372 (434)
Q Consensus       371 h~  372 (434)
                      ..
T Consensus       306 ~~  307 (316)
T 3bg1_A          306 GQ  307 (316)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.6e-37  Score=272.59  Aligned_cols=276  Identities=17%  Similarity=0.225  Sum_probs=223.3

Q ss_pred             EEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeec--cCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeE
Q 046226           95 ILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRL--KAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus        95 v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~  169 (434)
                      +.+|+| .+++||+|. |++|+|||+.+++.+..+  ..|...|.+++|+|+  .+++|+.||.|++||+.+++.+..+.
T Consensus        28 ~~~l~WS~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             CBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            567899 566787765 899999999999887765  467888999999997  89999999999999998776555442


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEEEEEcCCC
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVVADDG  248 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~  248 (434)
                                            +|...+.++.+  ++..+++++.++.+++|+.... ..+..+.+|...+.++.+.+++
T Consensus       107 ----------------------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A          107 ----------------------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             ----------------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             ----------------------CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence                                  58888877655  5789999999999999998865 5667788899999999999999


Q ss_pred             -eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE---EEEcCCCeEEEEEcCcccccccccCc
Q 046226          249 -VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL---YGGCTDGYIHYWHKGWFSAQLQYGGA  324 (434)
Q Consensus       249 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~  324 (434)
                       ++++++.|+.|++||++...  ...........+...|..+.+++++..+   ++++.++.|++||.+.......    
T Consensus       163 ~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~----  236 (318)
T 4ggc_A          163 RHLASGGNDNLVNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA----  236 (318)
T ss_dssp             SEEEEEETTSCEEEEESSCBT--TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE----
T ss_pred             CEEEEEecCcceeEEECCCCc--ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc----
Confidence             99999999999999987322  2233344556677899999999976533   4677899999999865443322    


Q ss_pred             ccCcccceEEEEee--CCEEEE--ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226          325 LQGHTHAVMCLASV--ANYVIS--GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       325 ~~~~~~~v~~~~~~--~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                       ..+...+..+.+.  ++.+++  |+.|+.|++||++++   +++..+.+|.+.|++++|+|+         +.+|+|||
T Consensus       237 -~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~spd---------g~~l~S~s  303 (318)
T 4ggc_A          237 -VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPD---------GATVASAA  303 (318)
T ss_dssp             -EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTT---------SSCEEEEE
T ss_pred             -ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCC---------CCEEEEEe
Confidence             2344566666665  555544  458999999999988   788899999999999999999         89999999


Q ss_pred             cCCeEEEEecCCCC
Q 046226          401 LDGVLKMWRVTRPK  414 (434)
Q Consensus       401 ~Dg~v~iw~~~~~~  414 (434)
                      .||+|+|||+.+..
T Consensus       304 ~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          304 ADETLRLWRCFELD  317 (318)
T ss_dssp             TTTEEEEECCSCCC
T ss_pred             cCCeEEEEECCCCC
Confidence            99999999997654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.6e-37  Score=300.54  Aligned_cols=330  Identities=15%  Similarity=0.144  Sum_probs=261.9

Q ss_pred             CCCcccccCCCCCCCCCCCCC-ccCCCCCCCcccce-----eeeEEEeeccc---cEEEEEE--c-CCEEEEEeCCCeEE
Q 046226           48 SSPISLHTSPLSSPRHPFNPT-AAAGSSSPETSSSY-----RCISSVLKKDG---QILCIAV--G-NGFIYTGSDSNVIR  115 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~h~~---~v~~~~~--~-~~~l~tg~~dg~i~  115 (434)
                      ...+..|...+.+..+.++.. .+++++.+..+..|     +++..+.+|.+   .|.+++|  + +++|++|+.||.|+
T Consensus       153 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          153 LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  232 (615)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence            345567788888888888877 68888887775554     56788899999   9999999  6 89999999999999


Q ss_pred             EecCCCceeEeec-c---CCCccEEEEEEe-CCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226          116 IWKQPEFTECGRL-K---AKTSMVVAMEVS-HDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM  190 (434)
Q Consensus       116 iwd~~~~~~~~~~-~---~~~~~v~~l~~~-~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
                      +||+.+++.+..+ .   .|...|.+++|+ ...+++++.|+.|++||+.+++....+....                  
T Consensus       233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------------  294 (615)
T 1pgu_A          233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK------------------  294 (615)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT------------------
T ss_pred             EEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC------------------
Confidence            9999999999998 6   899999999997 2289999999999999998766555443210                  


Q ss_pred             cCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEE--------------------------
Q 046226          191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVV--------------------------  244 (434)
Q Consensus       191 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------------------------  244 (434)
                      ..+...+.++.|. +++++++++.||.|++||+.+++.+..+.+|...|.+++|                          
T Consensus       295 ~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~  373 (615)
T 1pgu_A          295 QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSN  373 (615)
T ss_dssp             TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCS
T ss_pred             CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccC
Confidence            1245678888885 8999999999999999999988888888776666655555                          


Q ss_pred             -------cCCCeEEEEeCCCeEEEEecccccC------------------------------------------------
Q 046226          245 -------ADDGVLYSASDDATVRVWRRYFYSE------------------------------------------------  269 (434)
Q Consensus       245 -------~~~~~l~s~~~dg~i~iwd~~~~~~------------------------------------------------  269 (434)
                             .++..+++++.|+.|++||+.....                                                
T Consensus       374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (615)
T 1pgu_A          374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS  453 (615)
T ss_dssp             CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence                   2223667777777777776542110                                                


Q ss_pred             -------------cc-------eeEEE-EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC-
Q 046226          270 -------------NQ-------LHTLI-LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG-  327 (434)
Q Consensus       270 -------------~~-------~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-  327 (434)
                                   ..       ..... ..+..|...|.+++|+|++++|++++.||.|++||+......    ..+.+ 
T Consensus       454 ~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~----~~~~~~  529 (615)
T 1pgu_A          454 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK----TSRWAF  529 (615)
T ss_dssp             ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE----ECCSCC
T ss_pred             EcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce----eEeecC
Confidence                         00       00111 445667889999999999999999999999999998754433    23445 


Q ss_pred             cccceEEEEe------------eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccE
Q 046226          328 HTHAVMCLAS------------VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT  395 (434)
Q Consensus       328 ~~~~v~~~~~------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  395 (434)
                      |...|.+++|            ++++|++++.||.|++||+.++.  .++..+.+|...|++++|+|+         +. 
T Consensus       530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~l~~s~~---------~~-  597 (615)
T 1pgu_A          530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETP---------ST-  597 (615)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEET---------TE-
T ss_pred             CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc--eechhhhcCccceEEEEEcCC---------CC-
Confidence            8999999998            45699999999999999998863  567788999999999999999         88 


Q ss_pred             EEEeecCCeEEEEecCC
Q 046226          396 ICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       396 l~s~~~Dg~v~iw~~~~  412 (434)
                      |++++.||.|++|+++.
T Consensus       598 l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          598 LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEEEETTSCEEEEEEC-
T ss_pred             eEEecCCceEEEEeeec
Confidence            99999999999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.2e-37  Score=279.67  Aligned_cols=282  Identities=11%  Similarity=0.067  Sum_probs=233.5

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce---eEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEE
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT---ECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRV  156 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~v  156 (434)
                      +....+|.+.|++++|  ++++|++|+.||.|++||+.++.   ....+..|...|.+++|+|+   .+++++.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            3344579999999999  89999999999999999998766   34555689999999999975   6999999999999


Q ss_pred             eec-CCCCCceeeEeeeccCCCCceeEEEeccccccC--cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC--------
Q 046226          157 WRS-TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK--HMGPITSIAINVSDDTLYSASLDKTIKVWRIRD--------  225 (434)
Q Consensus       157 wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~--------  225 (434)
                      ||+ ..+.. ..                      +.+  |...|.+++|+| +++|++++.|+.|++||+++        
T Consensus        84 wd~~~~~~~-~~----------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~  139 (342)
T 1yfq_A           84 VDLIGSPSF-QA----------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             ECSSSSSSE-EE----------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             EEeccCCce-Ee----------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccc
Confidence            998 65532 11                      125  999999999999 99999999999999999987        


Q ss_pred             -CeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEeccc-ccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEc
Q 046226          226 -SKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYF-YSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGC  302 (434)
Q Consensus       226 -~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  302 (434)
                       ++++..+. |...|.+++|++++ +++++.|+.|++||++. ..    .........+...+.+++|+| +++++++++
T Consensus       140 ~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  213 (342)
T 1yfq_A          140 KNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCED----DNGTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             EESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTT----CCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             cCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCcccc----ccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence             77777776 88999999999887 99999999999999882 11    112233446778999999999 999999999


Q ss_pred             CCCeEEEEEcCcc--cccccccCcccCcc---------cceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEee
Q 046226          303 TDGYIHYWHKGWF--SAQLQYGGALQGHT---------HAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       303 ~dg~i~i~d~~~~--~~~~~~~~~~~~~~---------~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  369 (434)
                      .||.|++||++..  .........+..|.         ..|.+++|+  +++|++++.||.|++||+.++   +.+..+.
T Consensus       214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~  290 (342)
T 1yfq_A          214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFA  290 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECC
T ss_pred             cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---hHhhhhh
Confidence            9999999998765  11122233444554         489999986  679999999999999999987   7888899


Q ss_pred             cc-ccceeEEEEeecccCCCCCCcccEEEEeecCCe-EEEEec
Q 046226          370 GH-RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV-LKMWRV  410 (434)
Q Consensus       370 ~h-~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~-v~iw~~  410 (434)
                      +| ...|.+++  |+         +.+|++++.||. .+.|..
T Consensus       291 ~~h~~~v~~~~--~~---------~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          291 KFNEDSVVKIA--CS---------DNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CCSSSEEEEEE--EC---------SSEEEEEEECTHHHHCSSS
T ss_pred             cccCCCceEec--CC---------CCeEEEEecCCcccccccc
Confidence            98 99999999  87         899999999998 666664

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-37  Score=327.43  Aligned_cols=354  Identities=18%  Similarity=0.237  Sum_probs=289.1

Q ss_pred             CCCCcccccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEE----cCCEEEEEeCCCeEEEe
Q 046226           47 FSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV----GNGFIYTGSDSNVIRIW  117 (434)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~----~~~~l~tg~~dg~i~iw  117 (434)
                      ....+.+|...+.+..+++++..+++++.+..+..|     +++.++.+|.+.|.+++|    ++.++++|+.||.|++|
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw  728 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW  728 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence            344566788899999999999999999988776555     568889999999999999    45589999999999999


Q ss_pred             cCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeec--------------------cC
Q 046226          118 KQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATI--------------------PK  175 (434)
Q Consensus       118 d~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~--------------------~~  175 (434)
                      |+.+++.+..+.+|...|.+++|+|+  .+++++.||.|++||+..+.....+.....                    ..
T Consensus       729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  808 (1249)
T 3sfz_A          729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA  808 (1249)
T ss_dssp             ETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred             ECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence            99999999999999999999999997  899999999999999987755444332110                    00


Q ss_pred             CCCc--------eeEEEec-----cccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEE
Q 046226          176 TGGA--------VRNLIVG-----KDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINAL  242 (434)
Q Consensus       176 ~~~~--------~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  242 (434)
                      .+..        +..+...     .....+|...|.+++|+|+++++++++.||.|++||+.+++.+..+.+|...|.++
T Consensus       809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v  888 (1249)
T 3sfz_A          809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV  888 (1249)
T ss_dssp             TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEE
Confidence            0100        0000000     00122688999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCC-eEEEEeCCCeEEEEecccccCc---------------------------------------------------
Q 046226          243 VVADDG-VLYSASDDATVRVWRRYFYSEN---------------------------------------------------  270 (434)
Q Consensus       243 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~---------------------------------------------------  270 (434)
                      +|+|++ .+++++.||.|++||+......                                                   
T Consensus       889 ~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  968 (1249)
T 3sfz_A          889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC  968 (1249)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence            999999 9999999999999996521000                                                   


Q ss_pred             ----------------------ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226          271 ----------------------QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       271 ----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                                            ........+.+|...|.+++|+|++++|++++.||.|++||+......     ....|
T Consensus       969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~ 1043 (1249)
T 3sfz_A          969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-----FLQAH 1043 (1249)
T ss_dssp             ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-----CCBCC
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-----EEecC
Confidence                                  000112234567888999999999999999999999999998754432     24478


Q ss_pred             ccceEEEEeeC-CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226          329 THAVMCLASVA-NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM  407 (434)
Q Consensus       329 ~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i  407 (434)
                      ...|.++.+.+ ..+++++.||.|++||+.++   .....+.+|.+.|++++|+|+         +.+|++++.||+|++
T Consensus      1044 ~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~s~d---------~~~l~s~s~d~~v~i 1111 (1249)
T 3sfz_A         1044 QETVKDFRLLQDSRLLSWSFDGTVKVWNVITG---RIERDFTCHQGTVLSCAISSD---------ATKFSSTSADKTAKI 1111 (1249)
T ss_dssp             SSCEEEEEECSSSEEEEEESSSEEEEEETTTT---CCCEEEECCSSCCCCEEECSS---------SSSCEEECCSSCCCE
T ss_pred             CCcEEEEEEcCCCcEEEEECCCcEEEEECCCC---ceeEEEcccCCcEEEEEECCC---------CCEEEEEcCCCcEEE
Confidence            88999999974 58999999999999999988   677888999999999999999         899999999999999


Q ss_pred             EecCCCCccc
Q 046226          408 WRVTRPKSSC  417 (434)
Q Consensus       408 w~~~~~~~~~  417 (434)
                      ||+.+++...
T Consensus      1112 wd~~~~~~~~ 1121 (1249)
T 3sfz_A         1112 WSFDLLSPLH 1121 (1249)
T ss_dssp             ECSSSSSCSB
T ss_pred             EECCCcceee
Confidence            9999887543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.2e-37  Score=277.16  Aligned_cols=284  Identities=16%  Similarity=0.180  Sum_probs=238.9

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCce
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVK  166 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~  166 (434)
                      |.+.|.+++|  +|++++++..++.+.+|+............|...|.+++|+|+  .+++++ ||.|++||+..+....
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            6778999999  8999999988888888877776655556689999999999997  667766 9999999998765433


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe--eEEEcccCccCeEEEEE
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVV  244 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~  244 (434)
                      ......                 ..+|...|.+++|+|++++|++++.||.|++||+.+++  ....+..|...|.+++|
T Consensus        87 ~~~~~~-----------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  149 (337)
T 1gxr_A           87 PVSQLD-----------------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             CSEEEE-----------------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             eeeccc-----------------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence            332111                 11588999999999999999999999999999999877  66778889999999999


Q ss_pred             cCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC
Q 046226          245 ADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG  323 (434)
Q Consensus       245 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  323 (434)
                      +|++ .+++++.||.|++||++      .......+..|...+.+++|+|++++|++++.||.|++||++........  
T Consensus       150 ~~~~~~l~~~~~dg~v~~~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--  221 (337)
T 1gxr_A          150 SPDSKVCFSCCSDGNIAVWDLH------NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--  221 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETT------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--
T ss_pred             CCCCCEEEEEeCCCcEEEEeCC------CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee--
Confidence            9999 99999999999999987      23455667788999999999999999999999999999999765443332  


Q ss_pred             cccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226          324 ALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL  401 (434)
Q Consensus       324 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  401 (434)
                         .+...+.+++++  +++|++++.|+.|++||+.++.    ...+..|...|.+++|+|+         +++|++++.
T Consensus       222 ---~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~  285 (337)
T 1gxr_A          222 ---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYC---------GKWFVSTGK  285 (337)
T ss_dssp             ---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTT---------SSEEEEEET
T ss_pred             ---cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCC---------CCEEEEecC
Confidence               356678888885  6699999999999999999862    3467789999999999999         899999999


Q ss_pred             CCeEEEEecCCCCcc
Q 046226          402 DGVLKMWRVTRPKSS  416 (434)
Q Consensus       402 Dg~v~iw~~~~~~~~  416 (434)
                      ||.|++|++.+++..
T Consensus       286 dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          286 DNLLNAWRTPYGASI  300 (337)
T ss_dssp             TSEEEEEETTTCCEE
T ss_pred             CCcEEEEECCCCeEE
Confidence            999999999988754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.1e-37  Score=280.24  Aligned_cols=298  Identities=13%  Similarity=0.123  Sum_probs=219.4

Q ss_pred             EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc----eeEeeccCCCccEEEEEEeC---C-EEEEEEcCCeEE
Q 046226           86 SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF----TECGRLKAKTSMVVAMEVSH---D-RVYAAYGDGKIR  155 (434)
Q Consensus        86 ~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~~~---~-~l~~~s~dg~i~  155 (434)
                      ..+.+|.+.|++++|  ++++|++|+.||.|++||+.++    +....+.+|...|.+++|+|   . .|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            346789999999999  8999999999999999999875    56777889999999999987   2 899999999999


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC--CCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS--DDTLYSASLDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~  233 (434)
                      +||+..+......         .....    ...+..|...|.+++|+|+  +.+|++++.||.|++||+++++.+..+.
T Consensus        85 vwd~~~~~~~~~~---------~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  151 (351)
T 3f3f_A           85 LWEEDPDQEECSG---------RRWNK----LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT  151 (351)
T ss_dssp             EEEECTTSCTTSS---------CSEEE----EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred             EEecCCCcccccc---------cCcce----eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence            9999866431100         00000    0012369999999999999  9999999999999999998876554433


Q ss_pred             -------------cCccCeEEEEEcCC---C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC-
Q 046226          234 -------------AHSEPINALVVADD---G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-  295 (434)
Q Consensus       234 -------------~~~~~v~~~~~~~~---~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  295 (434)
                                   .|...+.+++|+|+   + .+++++.|+.+.+|+..    .........+.+|...|.+++|+|++ 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~~~~~p~~~  227 (351)
T 3f3f_A          152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK----DGKLHVAAKLPGHKSLIRSISWAPSIG  227 (351)
T ss_dssp             EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT----TSCEEEEEECCCCCSCEEEEEECCCSS
T ss_pred             ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC----CCceeeeeecCCCCcceeEEEECCCCC
Confidence                         57789999999997   5 99999999999777755    22334466778899999999999998 


Q ss_pred             ---CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe------eCCEEEEecCCCcEEEEeccCCCceeeEE
Q 046226          296 ---GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS------VANYVISGSADSTSRVWAREQDGRHTMLA  366 (434)
Q Consensus       296 ---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (434)
                         ++|++++.||.|++||++.........    .+...+.....      .......+.....+.+|+....   ..+.
T Consensus       228 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  300 (351)
T 3f3f_A          228 RWYQLIATGCKDGRIRIFKITEKLSPLASE----ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV---ELLS  300 (351)
T ss_dssp             CSSEEEEEEETTSCEEEEEEEECC-------------------------------------------CCSEEE---EEEE
T ss_pred             CcceEEEEEcCCCeEEEEeCCCCcCccccC----CcccceeccCCCcccccccccccccccceeeeecccccc---cEEE
Confidence               899999999999999987543322211    11111111111      1222233334455666665554   7888


Q ss_pred             EeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       367 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      .+.+|...|++++|+|+         +++|++++.||.|++|++.+++..
T Consensus       301 ~~~~h~~~v~~~~~s~~---------~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          301 EHDDHNGEVWSVSWNLT---------GTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             EECTTSSCEEEEEECSS---------SCCEEEEETTSCEEEEEECTTSCE
T ss_pred             EEecccccEEEEEEcCC---------CCEEEEecCCCcEEEEecCcCcch
Confidence            99999999999999999         899999999999999999987654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.7e-36  Score=270.35  Aligned_cols=253  Identities=22%  Similarity=0.356  Sum_probs=214.5

Q ss_pred             ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          122 FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      ......+.+|...|.+++|+|+  .+++++.||.|++|++..++....+                      .+|...|.+
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------------------~~h~~~v~~   70 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----------------------SGHKLGISD   70 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE----------------------CCCSSCEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh----------------------ccCCCceEE
Confidence            4566778899999999999997  8999999999999998766544333                      269999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226          200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  278 (434)
                      ++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++ +|++++.|+.|++||++      .......
T Consensus        71 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~------~~~~~~~  144 (312)
T 4ery_A           71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK------TGKCLKT  144 (312)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT------TCCEEEE
T ss_pred             EEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC------CCEEEEE
Confidence            9999999999999999999999999999999999999999999999999 99999999999999987      2344566


Q ss_pred             ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEec
Q 046226          279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAR  356 (434)
Q Consensus       279 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~  356 (434)
                      +..|..+|.+++|+|++++|++++.||.|++||++........   ...+...+.+++++  +++|++++.||.|++||+
T Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  221 (312)
T 4ery_A          145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY  221 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE---eccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            7788899999999999999999999999999998755433222   23456678888875  679999999999999999


Q ss_pred             cCCCceeeEEEeeccccceeE--EEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          357 EQDGRHTMLAVLVGHRGPIRC--AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       357 ~~~~~~~~~~~~~~h~~~v~~--~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      .++   +++..+.+|...+.+  ..+++..        +.+|++|+.||.|++||+.+++..
T Consensus       222 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~sg~~dg~i~vwd~~~~~~~  272 (312)
T 4ery_A          222 SKG---KCLKTYTGHKNEKYCIFANFSVTG--------GKWIVSGSEDNLVYIWNLQTKEIV  272 (312)
T ss_dssp             TTT---EEEEEECSSCCSSSCCCEEEECSS--------SCEEEECCTTSCEEEEETTTCCEE
T ss_pred             CCC---cEEEEEEecCCceEEEEEEEEeCC--------CcEEEEECCCCEEEEEECCCchhh
Confidence            987   778888888776543  3344332        789999999999999999987653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.1e-37  Score=279.48  Aligned_cols=304  Identities=17%  Similarity=0.185  Sum_probs=241.6

Q ss_pred             ccCCCCCCCcccceeeeEEEeeccccEEEEEE--c---CCEEEEEeCCCeEEEecCCC-ceeE-eeccCCCccEEEEEEe
Q 046226           69 AAAGSSSPETSSSYRCISSVLKKDGQILCIAV--G---NGFIYTGSDSNVIRIWKQPE-FTEC-GRLKAKTSMVVAMEVS  141 (434)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~---~~~l~tg~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~l~~~  141 (434)
                      .+......+.....+.+..+.+|.+.|+|++|  +   |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~   95 (368)
T 3mmy_A           16 SMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS   95 (368)
T ss_dssp             ECC----CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC
T ss_pred             cEEEEeccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEEC
Confidence            33333334455667778889999999999999  4   58999999999999999987 5444 7788899999999999


Q ss_pred             CC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE--ecCCCEEEEEecCCc
Q 046226          142 HD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI--NVSDDTLYSASLDKT  217 (434)
Q Consensus       142 ~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~  217 (434)
                      |+  .|++++.||.|++||+..++.....                       .|...|.+++|  ++++++|++++.||.
T Consensus        96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~  152 (368)
T 3mmy_A           96 DDGSKVFTASCDKTAKMWDLSSNQAIQIA-----------------------QHDAPVKTIHWIKAPNYSCVMTGSWDKT  152 (368)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------ECSSCEEEEEEEECSSCEEEEEEETTSE
T ss_pred             cCCCEEEEEcCCCcEEEEEcCCCCceeec-----------------------cccCceEEEEEEeCCCCCEEEEccCCCc
Confidence            97  8999999999999999876543322                       59999999999  889999999999999


Q ss_pred             EEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226          218 IKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL  297 (434)
Q Consensus       218 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  297 (434)
                      |++||+++++.+..+..+. .+.++.+.++ .+++++.++.+++||++.  .  ..........+...+.++++.++...
T Consensus       153 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (368)
T 3mmy_A          153 LKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLEN--Q--PSEFRRIESPLKHQHRCVAIFKDKQN  226 (368)
T ss_dssp             EEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSS--S--CEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred             EEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEecc--c--cchhhhccccccCCCceEEEcccCCC
Confidence            9999999999888888664 6677777644 788888999999999872  1  12222223334456677777766554


Q ss_pred             ----EEEEcCCCeEEEEEcCcccccccccCcccCccc------------ceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          298 ----LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH------------AVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       298 ----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                          +++++.||.|++||++..... .....+.+|..            .|.+++|+  +++|++++.||.|++||+.++
T Consensus       227 ~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          227 KPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             CEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             CCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence                999999999999999755321 22223445554            79999986  569999999999999999987


Q ss_pred             CceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          360 GRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       360 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                         .++..+.+|...|++++|+|+         +.+|++++.|+..+.|++...+
T Consensus       306 ---~~~~~~~~~~~~v~~~~~s~~---------g~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          306 ---TKLKTSEQLDQPISACCFNHN---------GNIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             ---EEEEECCCCSSCEEEEEECTT---------SSCEEEEECCCSTTCGGGCCTT
T ss_pred             ---cEEEEecCCCCCceEEEECCC---------CCeEEEEecccccccccccCCC
Confidence               788999999999999999999         9999999999977777765544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.2e-36  Score=304.61  Aligned_cols=290  Identities=19%  Similarity=0.204  Sum_probs=249.0

Q ss_pred             eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEee
Q 046226           83 RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWR  158 (434)
Q Consensus        83 ~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd  158 (434)
                      +..+.+.+|.+.|.+++|  ++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|+  .|++++.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            456788999999999999  8999999999999999999999999999999999999999997  899999999999999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCcc
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSE  237 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~  237 (434)
                      +.+++.+..+.                      +|...|.+++|+|++++|++++.||.|++||+.++ .....+..|..
T Consensus        84 ~~~~~~~~~~~----------------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  141 (814)
T 3mkq_A           84 YNTGEKVVDFE----------------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (814)
T ss_dssp             TTTCCEEEEEE----------------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred             CCCCcEEEEEe----------------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence            98776555442                      59999999999999999999999999999999887 77788889999


Q ss_pred             CeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec--CCCEEEEEcCCCeEEEEEcC
Q 046226          238 PINALVVAD-DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL--DDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       238 ~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~  313 (434)
                      .|.+++|+| ++ .+++++.||.|++||+...  ...   ......+...+..++|+|  ++.+|++++.||.|++||++
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~--~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~  216 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS--TPN---FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCS--SCS---EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cce---eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            999999999 66 9999999999999998721  111   112233447899999999  99999999999999999986


Q ss_pred             cccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCC
Q 046226          314 WFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETED  391 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  391 (434)
                      ....    ...+.+|...|.+++|+  +++|++++.||.|++||+.++   ..+..+..|...+.+++|+|+        
T Consensus       217 ~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~--------  281 (814)
T 3mkq_A          217 TKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPT--------  281 (814)
T ss_dssp             TTEE----EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTT--------
T ss_pred             CCcE----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccC--------
Confidence            5433    33456788899999886  569999999999999999987   778888899999999999998        


Q ss_pred             ccc-EEEEeecCCeEEEEecCCCCc
Q 046226          392 EYC-TICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       392 ~~~-~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                       +. .+++++.|+.+.+|++..+..
T Consensus       282 -~~~~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          282 -GRKNYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             -CGGGEEEEEETTEEEEEECSCCSC
T ss_pred             -CCceEEEEEeCCCEEEEEcCCCCc
Confidence             44 335555678899999876543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.6e-37  Score=274.24  Aligned_cols=254  Identities=15%  Similarity=0.186  Sum_probs=200.6

Q ss_pred             eccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec
Q 046226          127 RLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV  204 (434)
Q Consensus       127 ~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  204 (434)
                      .+.+|...|.+++|+++  +|++|+.|++|++||+..+......                    .+.+|...|.+++|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~--------------------~l~gH~~~V~~v~~~~   67 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA--------------------DLRGHEGPVWQVAWAH   67 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEE--------------------EEECCSSCEEEEEECC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEE--------------------EEcCCCccEEEEEeCC
Confidence            35689999999999986  8999999999999998754321111                    1237999999999986


Q ss_pred             --CCCEEEEEecCCcEEEEEcCCC--eeEEEcccCccCeEEEEEcCC--C-eEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226          205 --SDDTLYSASLDKTIKVWRIRDS--KCIETIQAHSEPINALVVADD--G-VLYSASDDATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       205 --~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  277 (434)
                        ++++|++|+.|++|++||++++  +.+..+.+|...|.+++|+|+  + +|++++.|+.|++||++.   ........
T Consensus        68 ~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~---~~~~~~~~  144 (316)
T 3bg1_A           68 PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG---EGQWEVKK  144 (316)
T ss_dssp             GGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS---SSCEEECC
T ss_pred             CCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC---CCCcceee
Confidence              4899999999999999999887  466778889999999999997  5 899999999999999872   11222334


Q ss_pred             EecccccCeEEEEEecC-----------------CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC-
Q 046226          278 TLTAKYSPVKTLTLTLD-----------------DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA-  339 (434)
Q Consensus       278 ~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  339 (434)
                      .+..|...+.+++|+|+                 +++|++|+.|+.|++||++... .......+.+|...|.+++|++ 
T Consensus       145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~  223 (316)
T 3bg1_A          145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPS  223 (316)
T ss_dssp             BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCC
T ss_pred             eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCC
Confidence            55678889999999997                 4789999999999999985321 1123346779999999999974 


Q ss_pred             -----CEEEEecCCCcEEEEeccCCCce-eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          340 -----NYVISGSADSTSRVWAREQDGRH-TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       340 -----~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                           ++|++++.|++|++|++.+.... .....+..|.+.|.+++|+|+         +.+|++++.||+|++|+....
T Consensus       224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~---------g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT---------ANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT---------TCCEEEEESSSCEEEEEECTT
T ss_pred             CCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC---------CCEEEEEcCCCeEEEEEECCC
Confidence                 58999999999999999863211 122345678999999999999         899999999999999998643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-36  Score=300.46  Aligned_cols=198  Identities=12%  Similarity=0.085  Sum_probs=168.6

Q ss_pred             EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCC
Q 046226           88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNG  164 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~  164 (434)
                      ..+|.+.|+|++|  ++++||+|+.||+|+||+..+.+....+. |...|.+++|+|+ +|++++.|+.|++||+.+++.
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcE
Confidence            4689999999999  89999999999999999998877766554 7889999999997 699999999999999987665


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE-----------EEcc
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI-----------ETIQ  233 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~  233 (434)
                      +..+                       .|...|++++|+|++++|++|+.||.|++||+++++..           ..+.
T Consensus        92 ~~~~-----------------------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~  148 (902)
T 2oaj_A           92 LTTV-----------------------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA  148 (902)
T ss_dssp             EEEE-----------------------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred             EEEE-----------------------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence            4444                       26678999999999999999999999999999988754           2346


Q ss_pred             cCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecc------------------cccCeEEEEEec
Q 046226          234 AHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTA------------------KYSPVKTLTLTL  293 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~~~  293 (434)
                      +|.+.|.+++|+|++  .+++|+.||.| +||++.      ......+..                  |...|.+++|+|
T Consensus       149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE------NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT------TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC------CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence            788999999999974  89999999999 999972      222333333                  346799999999


Q ss_pred             CCCEEEEEcCCCeEEEEEcCccc
Q 046226          294 DDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       294 ~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                      +|++|++|+.||.|++||++..+
T Consensus       222 dg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          222 NSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             TSSEEEEEETTCCEEEEETTTCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCc
Confidence            99999999999999999997643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.1e-36  Score=272.30  Aligned_cols=284  Identities=13%  Similarity=0.104  Sum_probs=235.7

Q ss_pred             cccccCCCCCCCCCCCCCccCCCCCCCccccee-------eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC
Q 046226           51 ISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-------CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE  121 (434)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~  121 (434)
                      +..|..++.+..+.+++..+++++.+..+..|+       ++..+.+|.+.|.+++|  ++++|++|+.||.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            345778889988999999999998888876665       67778899999999999  799999999999999999988


Q ss_pred             ceeEee--ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCe
Q 046226          122 FTECGR--LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPI  197 (434)
Q Consensus       122 ~~~~~~--~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  197 (434)
                      ++....  +..|...|.+++|+|+  .+++++.|+.|++||+............                  ...|...|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~------------------~~~~~~~i  145 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI------------------KKPIRSTV  145 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE------------------CTTCCSCE
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee------------------ecccCCCe
Confidence            765443  4678999999999987  8999999999999999876542222111                  12588999


Q ss_pred             EEEEEecCCCEEEEEecCCcEEEEEc------------------CCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCe
Q 046226          198 TSIAINVSDDTLYSASLDKTIKVWRI------------------RDSKCIETIQAHSEPINALVVADDG-VLYSASDDAT  258 (434)
Q Consensus       198 ~~~~~~~~~~~l~s~~~dg~i~vwd~------------------~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~  258 (434)
                      .+++|+|++++|++++.||.|++||+                  ..++.+..+..|...|.+++|+|++ +|++++.|+.
T Consensus       146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  225 (372)
T 1k8k_C          146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST  225 (372)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred             eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE
Confidence            99999999999999999999999995                  4678889999999999999999999 9999999999


Q ss_pred             EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc--cc--------------------
Q 046226          259 VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW--FS--------------------  316 (434)
Q Consensus       259 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~--------------------  316 (434)
                      |++||++      .......+..|...+.+++|+|++.+|++| .|+.|++||++.  ..                    
T Consensus       226 i~i~d~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (372)
T 1k8k_C          226 VCLADAD------KKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  298 (372)
T ss_dssp             EEEEEGG------GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             EEEEECC------CCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence            9999997      223455667788899999999999988888 899999999876  21                    


Q ss_pred             --------ccccc-------cCcccCcccceEEEEee---C---CEEEEecCCCcEEEEeccCC
Q 046226          317 --------AQLQY-------GGALQGHTHAVMCLASV---A---NYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       317 --------~~~~~-------~~~~~~~~~~v~~~~~~---~---~~l~s~~~dg~i~iwd~~~~  359 (434)
                              .....       .....+|...|.++++.   |   ++|++|+.||.|++||+.++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          299 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             hhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                    00000       11224899999999853   4   79999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=282.38  Aligned_cols=298  Identities=13%  Similarity=0.145  Sum_probs=217.8

Q ss_pred             eccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce-----------eEeeccCCC------------ccEEEEEEeCC-
Q 046226           90 KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT-----------ECGRLKAKT------------SMVVAMEVSHD-  143 (434)
Q Consensus        90 ~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~l~~~~~-  143 (434)
                      .|.+.|++++|  ++++||+|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|+ 
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            37899999999  89999999999999999998776           577888998            88999999986 


Q ss_pred             ---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC-----------ce---------eEEEeccccccCcCCCeEEE
Q 046226          144 ---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG-----------AV---------RNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       144 ---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----------~~---------~~~~~~~~~~~~~~~~v~~~  200 (434)
                         .+++++.|+.|++||+.........  .......+           .+         ...........+|...|.++
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEG--YNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEEC--CSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcce--ecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence               5999999999999998753321100  00000000           00         00000001124799999999


Q ss_pred             EEecCCCEEEEEecCCcEEEEEcCC-CeeEE-------EcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCc
Q 046226          201 AINVSDDTLYSASLDKTIKVWRIRD-SKCIE-------TIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       201 ~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      +|+|++++|++| .|+.|++||+++ ++.+.       .+..|...|.+++|+|++  +|++++.||.|++||++.... 
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-  261 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL-  261 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS-
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc-
Confidence            999999999999 799999999984 44444       366899999999999986  899999999999999983221 


Q ss_pred             ceeEEEEEeccccc------------CeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccc-------
Q 046226          271 QLHTLILTLTAKYS------------PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHA-------  331 (434)
Q Consensus       271 ~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------  331 (434)
                       .......+..+..            .|.+++|+|++++|++++. +.|++||++...   .....+.+|...       
T Consensus       262 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          262 -CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN---RPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             -SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS---SCSCCEESCGGGTTTHHHH
T ss_pred             -ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc---cccceeecccccccccccc
Confidence             1111234445554            8999999999999999999 999999997522   223344455432       


Q ss_pred             --------eEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEee--------------------------------
Q 046226          332 --------VMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLV--------------------------------  369 (434)
Q Consensus       332 --------v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------------------------  369 (434)
                              +..++|  ++++|++|+.||.|++||+.++..   + .+.                                
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD---I-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS  412 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE---E-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGG
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc---e-eeeecccccccccccCCccccccCCcccccccccc
Confidence                    122454  577999999999999999998732   2 222                                


Q ss_pred             -ccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          370 -GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       370 -~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                       .+...|..++|+|+         +.+||+++.|+ +++|.-
T Consensus       413 ~~~~~~i~~~~~~p~---------~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          413 LDFNKKILHTAWHPK---------ENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CCTTSCCCEEEECSS---------SSEEEEECSSC-EEEEEC
T ss_pred             cccCCceeEEEECCC---------CCEEEEEecce-eeeecc
Confidence             23456888999999         89999998876 777763

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.6e-36  Score=281.87  Aligned_cols=275  Identities=21%  Similarity=0.322  Sum_probs=231.7

Q ss_pred             cccCCCCCCCCCCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEee
Q 046226           53 LHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGR  127 (434)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~  127 (434)
                      .|...+.+..+  ++..+++++.+..+..|+     ++..+.+|.+.|.+++|++++|++|+.||.|++||+.+++.+..
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  208 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT  208 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            34444554433  688888888888766654     67889999999999999999999999999999999999999999


Q ss_pred             ccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226          128 LKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD  207 (434)
Q Consensus       128 ~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (434)
                      +..|...|.+++|+++.+++++.||.|++||+...........                   +.+|...|.+++|  +++
T Consensus       209 ~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------------------~~~~~~~v~~~~~--~~~  267 (435)
T 1p22_A          209 LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV-------------------LVGHRAAVNVVDF--DDK  267 (435)
T ss_dssp             ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEE-------------------ECCCSSCEEEEEE--ETT
T ss_pred             EcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeE-------------------ecCCCCcEEEEEe--CCC
Confidence            9999999999999999999999999999999987655432211                   1369999999999  688


Q ss_pred             EEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeE
Q 046226          208 TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVK  287 (434)
Q Consensus       208 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  287 (434)
                      +|++|+.||.|++||+++++.+..+.+|...|.++.+. +..+++|+.||.|++||++      .......+.+|...|.
T Consensus       268 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~iwd~~------~~~~~~~~~~h~~~v~  340 (435)
T 1p22_A          268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIE------CGACLRVLEGHEELVR  340 (435)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEEEETT------TCCEEEEECCCSSCEE
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEEEECC------CCCEEEEEeCCcCcEE
Confidence            99999999999999999999999999999999999995 3499999999999999987      3345667788999999


Q ss_pred             EEEEecCCCEEEEEcCCCeEEEEEcCccccccc-----ccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226          288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ-----YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ++++  ++.+|++|+.||.|++||+........     ....+.+|...|.++++++++|++|+.||.|++||+.+.
T Consensus       341 ~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          341 CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             EEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred             EEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence            9999  789999999999999999865432111     234567899999999999999999999999999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-35  Score=273.76  Aligned_cols=276  Identities=12%  Similarity=0.149  Sum_probs=225.1

Q ss_pred             cccCCCCCCCCCCCCCccCCCCCCCccccee-----eeEEEee-ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCcee
Q 046226           53 LHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----CISSVLK-KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTE  124 (434)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~  124 (434)
                      ++............+..+++++.+..+..|+     +...+.. |.+.|++++|  ++++|++|+.||.|++||+.+++.
T Consensus        89 ~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  168 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK  168 (401)
T ss_dssp             TCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE
Confidence            4444444433444455667777777766654     3445544 8999999999  899999999999999999999999


Q ss_pred             EeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCC-ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe
Q 046226          125 CGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNG-VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN  203 (434)
Q Consensus       125 ~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  203 (434)
                      +..+..|...|.+++|+++.+++++.||.|++||+..... ...+                      .+|...|.+++|+
T Consensus       169 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------~~~~~~v~~~~~~  226 (401)
T 4aez_A          169 LRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL----------------------QGHSSEVCGLAWR  226 (401)
T ss_dssp             EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE----------------------ECCSSCEEEEEEC
T ss_pred             EEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEE----------------------cCCCCCeeEEEEc
Confidence            9999999999999999999999999999999999974332 2222                      2699999999999


Q ss_pred             cCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEe--CCCeEEEEecccccCcceeEEEEEe
Q 046226          204 VSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSAS--DDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       204 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      |++++|++|+.||.|++||+++++.+..+..|...|.+++|+|++  ++++++  .|+.|++||++.      ......+
T Consensus       227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~------~~~~~~~  300 (401)
T 4aez_A          227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT------GARVNTV  300 (401)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT------CCEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC------CCEEEEE
Confidence            999999999999999999999999999999999999999999977  666665  799999999872      2222333


Q ss_pred             cccccCeEEEEEecCCCEEEE--EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEe
Q 046226          280 TAKYSPVKTLTLTLDDGLLYG--GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWA  355 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd  355 (434)
                      . +...+.+++|+|+++++++  |+.||.|++||+......  ....+.+|...|.+++|+  +.+|++++.||.|++||
T Consensus       301 ~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          301 D-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             E-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             e-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            2 5578999999999999999  558999999998753222  223456888999999986  67999999999999999


Q ss_pred             ccCC
Q 046226          356 REQD  359 (434)
Q Consensus       356 ~~~~  359 (434)
                      +.++
T Consensus       378 ~~~~  381 (401)
T 4aez_A          378 VYDG  381 (401)
T ss_dssp             CCC-
T ss_pred             CCCC
Confidence            9987

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=270.17  Aligned_cols=263  Identities=15%  Similarity=0.160  Sum_probs=216.1

Q ss_pred             eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC--CceeEeeccCCCccEEEEEEeC----CEEEEEEcCCeE
Q 046226           83 RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP--EFTECGRLKAKTSMVVAMEVSH----DRVYAAYGDGKI  154 (434)
Q Consensus        83 ~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~~~----~~l~~~s~dg~i  154 (434)
                      +++..+.+|.+.|++++|  ++++|++|+.||.|+|||+.  +.+.+..+.+|...|.+++|++    +.|++++.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            456778999999999999  89999999999999999997  6677888999999999999974    489999999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC--CCEEEEEecCCcEEEEEcCCCe--eEE
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS--DDTLYSASLDKTIKVWRIRDSK--CIE  230 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~--~~~  230 (434)
                      ++||+..++.....                    .+..|...|.+++|+|+  +.+|++++.||.|++||+.++.  ...
T Consensus        82 ~iwd~~~~~~~~~~--------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           82 LIWKEENGRWSQIA--------------------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             EEEEEETTEEEEEE--------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred             EEEEcCCCceeEee--------------------eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE
Confidence            99999765421111                    11258999999999999  9999999999999999998873  445


Q ss_pred             EcccCccCeEEEEEcC-------------CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC--
Q 046226          231 TIQAHSEPINALVVAD-------------DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD--  294 (434)
Q Consensus       231 ~~~~~~~~v~~~~~~~-------------~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--  294 (434)
                      .+..|...|.+++|+|             ++ .+++++.|+.|++||++  ...........+..|...|.+++|+|+  
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN--SDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEE--TTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEec--CCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            6678999999999999             46 99999999999999997  334445566778889999999999999  


Q ss_pred             -CCEEEEEcCCCeEEEEEcCcccccc-cccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEE
Q 046226          295 -DGLLYGGCTDGYIHYWHKGWFSAQL-QYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAV  367 (434)
Q Consensus       295 -~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  367 (434)
                       +++|++++.||.|++||++...... ........|...|.+++|+  +++|++++.||.|++|++........+..
T Consensus       220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~  296 (379)
T 3jrp_A          220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGE  296 (379)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEEEE
T ss_pred             CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccccc
Confidence             8999999999999999997643221 1222334578889999985  66999999999999999987654444443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-36  Score=274.50  Aligned_cols=258  Identities=17%  Similarity=0.204  Sum_probs=213.0

Q ss_pred             eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (434)
                      +.+..+.+|...|.+++|+|+  .|++++.||.|++||+.........                    .+.+|...|.++
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------------~~~~h~~~v~~~   61 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID--------------------TLTGHEGPVWRV   61 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE--------------------EECCCSSCEEEE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeee--------------------EecCCCCcEEEE
Confidence            456678899999999999997  8999999999999998632211111                    123699999999


Q ss_pred             EEecC--CCEEEEEecCCcEEEEEcCCCe--eEEEcccCccCeEEEEEcCC--C-eEEEEeCCCeEEEEecccccCccee
Q 046226          201 AINVS--DDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADD--G-VLYSASDDATVRVWRRYFYSENQLH  273 (434)
Q Consensus       201 ~~~~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~  273 (434)
                      +|+++  +++|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  + ++++++.|+.|++||++....    
T Consensus        62 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----  137 (379)
T 3jrp_A           62 DWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----  137 (379)
T ss_dssp             EECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC----
T ss_pred             EeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc----
Confidence            99977  9999999999999999999987  77888889999999999998  7 999999999999999983211    


Q ss_pred             EEEEEecccccCeEEEEEec-------------CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--
Q 046226          274 TLILTLTAKYSPVKTLTLTL-------------DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--  338 (434)
Q Consensus       274 ~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--  338 (434)
                      .....+..|...|.+++|+|             ++.+|++++.||.|++||++...........+.+|...|.+++|+  
T Consensus       138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  217 (379)
T 3jrp_A          138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPT  217 (379)
T ss_dssp             CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCC
T ss_pred             eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCC
Confidence            22234567889999999999             699999999999999999976655555556777899999999986  


Q ss_pred             ---CCEEEEecCCCcEEEEeccCCCceeeEE--EeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          339 ---ANYVISGSADSTSRVWAREQDGRHTMLA--VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       339 ---~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                         +++|++++.||.|++||+..+.......  ....|...|++++|+|+         +.+|++++.||.|++|++..+
T Consensus       218 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          218 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS---------GNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS---------SCCEEEEESSSSEEEEEEEET
T ss_pred             CCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC---------CCEEEEecCCCcEEEEeCCCC
Confidence               5689999999999999999864322233  33448899999999999         899999999999999999854

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4e-35  Score=264.60  Aligned_cols=283  Identities=17%  Similarity=0.229  Sum_probs=233.9

Q ss_pred             CCCcccccCCCCCCCCCCC-CCccCCCCCCCcccceee----------eEEEeeccccEEEEEE--cCCEEEEEeCCCeE
Q 046226           48 SSPISLHTSPLSSPRHPFN-PTAAAGSSSPETSSSYRC----------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVI  114 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i  114 (434)
                      ...+.+|...+.+..+.++ +..+++++.|.+++.|+.          ..++.+|.+.|.+++|  ++++|++|+.|+.|
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            3457899999999988876 678999999999998873          5678999999999999  89999999999999


Q ss_pred             EEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccC
Q 046226          115 RIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK  192 (434)
Q Consensus       115 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (434)
                      ++|+............+...+..+.++++  .+++++.|+.+++||+........                     ...+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~---------------------~~~~  169 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV---------------------QDES  169 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE---------------------CSSS
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE---------------------Eecc
Confidence            99999999988888889999999999886  899999999999999864322111                     1236


Q ss_pred             cCCCeEEEEEecCC--CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccC
Q 046226          193 HMGPITSIAINVSD--DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSE  269 (434)
Q Consensus       193 ~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~  269 (434)
                      |...+.+++|++++  .++++++.|+.|++||+++++.+..+.+|...|++++|+|++ +|++|+.|+.|++||++    
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~----  245 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN----  245 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT----
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec----
Confidence            89999999998764  578899999999999999999999999999999999999999 99999999999999987    


Q ss_pred             cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc-----cCcccCcccceEEEEee--CCEE
Q 046226          270 NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY-----GGALQGHTHAVMCLASV--ANYV  342 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~v~~~~~~--~~~l  342 (434)
                        .......+. +...+.+++|+|++.+ ++++.|+.|++||++.......+     .....+|...|.+++|+  +++|
T Consensus       246 --~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  321 (340)
T 4aow_A          246 --EGKHLYTLD-GGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL  321 (340)
T ss_dssp             --TTEEEEEEE-CSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred             --cCceeeeec-CCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence              222333333 3468999999998765 55667999999998754332222     12345788899999986  6699


Q ss_pred             EEecCCCcEEEEeccCC
Q 046226          343 ISGSADSTSRVWAREQD  359 (434)
Q Consensus       343 ~s~~~dg~i~iwd~~~~  359 (434)
                      ++|+.||.|+|||+++|
T Consensus       322 ~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          322 FAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             EEEETTSCEEEEEEEC-
T ss_pred             EEEeCCCEEEEEeCCCc
Confidence            99999999999999987

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.2e-36  Score=274.08  Aligned_cols=282  Identities=13%  Similarity=0.102  Sum_probs=217.3

Q ss_pred             ccccCCCCCCCCCCCCCccCCCCCCCccccee-------eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc
Q 046226           52 SLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-------CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF  122 (434)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~  122 (434)
                      ..+..++.+..+.+++..+++++.+..+..|+       ++..+.+|.+.|.+++|  ++++|++|+.|+.|++||+.++
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            34567899999999999999999998877764       45567889999999999  7899999999999999999987


Q ss_pred             e---eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccC-cCCC
Q 046226          123 T---ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK-HMGP  196 (434)
Q Consensus       123 ~---~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  196 (434)
                      +   ....+..|...|.+++|+|+  .+++++.|+.|++||+...+.......                   +.+ |...
T Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~~h~~~  148 (377)
T 3dwl_C           88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH-------------------LKRPLRST  148 (377)
T ss_dssp             -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE-------------------ECSSCCSC
T ss_pred             CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE-------------------eecccCCC
Confidence            7   67778889999999999987  899999999999999987653111110                   114 8999


Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcC------------------CCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCC
Q 046226          197 ITSIAINVSDDTLYSASLDKTIKVWRIR------------------DSKCIETIQAHSEPINALVVADDG-VLYSASDDA  257 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg  257 (434)
                      |.+++|+|++++|++++.|+.|++||+.                  .++++..+ .|...|.+++|+|++ +|++++.||
T Consensus       149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~  227 (377)
T 3dwl_C          149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS  227 (377)
T ss_dssp             EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT
T ss_pred             eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC
Confidence            9999999999999999999999999985                  35567777 899999999999999 999999999


Q ss_pred             eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc----cc-------------
Q 046226          258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ----LQ-------------  320 (434)
Q Consensus       258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~-------------  320 (434)
                      .|++||+..  ..........+..|...|.+++|+|++++|++++.++.+ +|+.......    ..             
T Consensus       228 ~i~iwd~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T 3dwl_C          228 SVTIAYPSA--PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGN  304 (377)
T ss_dssp             EEC-CEECS--TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSS
T ss_pred             cEEEEECCC--CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccc
Confidence            999999982  222223355677888999999999999999999876665 6665421100    00             


Q ss_pred             -------------------------------ccCcccCcccceEEEEee---CC---EEEEecCCCcEEEEec
Q 046226          321 -------------------------------YGGALQGHTHAVMCLASV---AN---YVISGSADSTSRVWAR  356 (434)
Q Consensus       321 -------------------------------~~~~~~~~~~~v~~~~~~---~~---~l~s~~~dg~i~iwd~  356 (434)
                                                     .......|...|.++.+.   +.   .|++|+.||.|++||+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          305 TGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             BCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                           000112388999999864   23   6999999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.1e-35  Score=272.85  Aligned_cols=283  Identities=16%  Similarity=0.197  Sum_probs=219.3

Q ss_pred             EEEEcCC---EEEEEeCCCeEEEecCCCce----eEeeccCCCccEEEEEEeC-C--EEEEEEcCCeEEEeecCCCCCce
Q 046226           97 CIAVGNG---FIYTGSDSNVIRIWKQPEFT----ECGRLKAKTSMVVAMEVSH-D--RVYAAYGDGKIRVWRSTWDNGVK  166 (434)
Q Consensus        97 ~~~~~~~---~l~tg~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~-~--~l~~~s~dg~i~vwd~~~~~~~~  166 (434)
                      .++++.+   ++++|+.||.|+||++....    .+..+.+|...|.+++|+| +  .|++++.||.|++||+..+....
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~  118 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL  118 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence            4555333   34457889999999986542    3445778999999999998 5  89999999999999998764321


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEc--ccCccCeEEEE
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETI--QAHSEPINALV  243 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~  243 (434)
                      ...        ..+.       .+.+|...|.+++|+|++ ++|++++.||.|++||+++++.+..+  ..|...|.+++
T Consensus       119 ~~~--------~~~~-------~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  183 (402)
T 2aq5_A          119 PLR--------EPVI-------TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD  183 (402)
T ss_dssp             CBC--------SCSE-------EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEE
T ss_pred             ccC--------CceE-------EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEE
Confidence            110        0111       112699999999999998 69999999999999999999999999  78999999999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe-cccccC-eEEEEEecCCCEEEEE---cCCCeEEEEEcCcccc
Q 046226          244 VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL-TAKYSP-VKTLTLTLDDGLLYGG---CTDGYIHYWHKGWFSA  317 (434)
Q Consensus       244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~  317 (434)
                      |+|++ +|++++.|+.|++||++      .......+ ..|... +.++.|+|++.+|++|   +.|+.|++||++....
T Consensus       184 ~~~~~~~l~~~~~d~~i~iwd~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          184 WSRDGALICTSCRDKRVRVIEPR------KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             ECTTSSCEEEEETTSEEEEEETT------TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             ECCCCCEEEEEecCCcEEEEeCC------CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence            99999 99999999999999987      22344444 566655 8999999999999999   7999999999976543


Q ss_pred             cccccCcccCcccceEEEEee--CCEEE-EecCCCcEEEEeccCCCc-eeeEEEeeccccceeEEEEeecccCCCCCCcc
Q 046226          318 QLQYGGALQGHTHAVMCLASV--ANYVI-SGSADSTSRVWAREQDGR-HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       318 ~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  393 (434)
                      ....  ....|...+.++.|+  +++|+ +|+.||.|++||+.++.. ...+..+. |...|.+++|+|+         +
T Consensus       258 ~~~~--~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~---------~  325 (402)
T 2aq5_A          258 PLSL--QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPK---------R  325 (402)
T ss_dssp             CSEE--EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCG---------G
T ss_pred             CceE--EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecc---------c
Confidence            2221  112456678888886  55665 666899999999998743 23333333 6689999999999         7


Q ss_pred             cEEEEeecCCeEEEEecCCCC
Q 046226          394 CTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       394 ~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      .++++  .|+.+++|++.+++
T Consensus       326 ~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          326 GLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             GSCGG--GTEEEEEEEEETTE
T ss_pred             cccee--cceeEEEEEcCCCc
Confidence            77765  56799999998754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3e-35  Score=296.36  Aligned_cols=323  Identities=17%  Similarity=0.213  Sum_probs=263.2

Q ss_pred             CCCcccccCCCCCCCCCCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226           48 SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~  120 (434)
                      .+.+.+|...+.+..+++++..+++++.+..+..|+     .+..+.+|.+.|.+++|  ++++|++|+.||.|++||+.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            345678999999999999999999998887765554     67889999999999999  89999999999999999999


Q ss_pred             CceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeE
Q 046226          121 EFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT  198 (434)
Q Consensus       121 ~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  198 (434)
                      +++.+..+..|...|.+++|+|+  .+++++.||.|++||+..+......                     +.+|...|.
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---------------------~~~~~~~v~  144 (814)
T 3mkq_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT---------------------FEGHEHFVM  144 (814)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE---------------------EECCSSCEE
T ss_pred             CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE---------------------EcCCCCcEE
Confidence            99999999999999999999997  7999999999999999765222111                     126999999


Q ss_pred             EEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEcccCc-cCeEEEEEcC--CC-eEEEEeCCCeEEEEecccccCccee
Q 046226          199 SIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQAHS-EPINALVVAD--DG-VLYSASDDATVRVWRRYFYSENQLH  273 (434)
Q Consensus       199 ~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~  273 (434)
                      +++|+| ++..|++++.||.|++||+.+++....+..+. ..+.+++|+|  ++ .+++++.||.|++||+.      ..
T Consensus       145 ~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~------~~  218 (814)
T 3mkq_A          145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TK  218 (814)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT------TT
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC------CC
Confidence            999999 88999999999999999999888777776654 8999999998  77 99999999999999987      23


Q ss_pred             EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC----EEEEecCCC
Q 046226          274 TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN----YVISGSADS  349 (434)
Q Consensus       274 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~s~~~dg  349 (434)
                      .....+..|...|.+++|+|++++|++++.||.|++||+.....    ...+..|...+.+++++++    +++++ .|+
T Consensus       219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~  293 (814)
T 3mkq_A          219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV----EKTLNVGLERSWCIATHPTGRKNYIASG-FDN  293 (814)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE----EEEECCSSSSEEEEEECTTCGGGEEEEE-ETT
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEeecCCCcEEEEEEccCCCceEEEEE-eCC
Confidence            45566778889999999999999999999999999999875433    2345567789999998744    35555 467


Q ss_pred             cEEEEeccCCCce-------eeE---------------------------------EEeeccccceeEEEEeecccCCCC
Q 046226          350 TSRVWAREQDGRH-------TML---------------------------------AVLVGHRGPIRCAIAFLGRFGEET  389 (434)
Q Consensus       350 ~i~iwd~~~~~~~-------~~~---------------------------------~~~~~h~~~v~~~~~~~~~~~~~~  389 (434)
                      .+.+|++......       ..+                                 ..+..+...+.+++|+|+      
T Consensus       294 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd------  367 (814)
T 3mkq_A          294 GFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPN------  367 (814)
T ss_dssp             EEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTT------
T ss_pred             CEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCC------
Confidence            7888887643210       011                                 122345556788999988      


Q ss_pred             CCcccEEEEeecCCeEEEEecCC
Q 046226          390 EDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       390 ~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                         |++|++++ ||.+.+|++..
T Consensus       368 ---g~~la~~~-~~~~~i~~~~~  386 (814)
T 3mkq_A          368 ---GRFVTVVG-DGEYVIYTALA  386 (814)
T ss_dssp             ---SSEEEEEE-TTEEEEEETTT
T ss_pred             ---CCEEEEec-CCEEEEEECcc
Confidence               77787777 78888888654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2e-35  Score=291.95  Aligned_cols=281  Identities=19%  Similarity=0.277  Sum_probs=228.6

Q ss_pred             CcccccCCCCCCCCCCC-CCccCCCCCCCcccceee----------eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEE
Q 046226           50 PISLHTSPLSSPRHPFN-PTAAAGSSSPETSSSYRC----------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRI  116 (434)
Q Consensus        50 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~i  116 (434)
                      .+.+|...+.+..++++ ...+++++.|.+++.|+.          ...+.+|.+.|.+++|  ++++|++|+.||+|+|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            57789999998887765 467889999999988854          4678999999999999  8999999999999999


Q ss_pred             ecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC
Q 046226          117 WKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM  194 (434)
Q Consensus       117 wd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (434)
                      ||+.+++.+..+.+|...|.+++|+|+  .+++++.|++|++||+.........                   ....+|.
T Consensus       457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~-------------------~~~~~h~  517 (694)
T 3dm0_A          457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS-------------------EGGEGHR  517 (694)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC-------------------SSTTSCS
T ss_pred             EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec-------------------cCCCCCC
Confidence            999999999999999999999999997  8999999999999997533111100                   0112689


Q ss_pred             CCeEEEEEecCC--CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226          195 GPITSIAINVSD--DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ  271 (434)
Q Consensus       195 ~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~  271 (434)
                      ..|.+++|+|++  ..|++|+.|+.|++||++++++...+.+|...|.+++|+|++ +|++++.||.|++||++      
T Consensus       518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~------  591 (694)
T 3dm0_A          518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA------  591 (694)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT------
T ss_pred             CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC------
Confidence            999999999986  689999999999999999999999999999999999999999 99999999999999987      


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc---------------cCcccceEEEE
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL---------------QGHTHAVMCLA  336 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~~~~~v~~~~  336 (434)
                      .......+. +...+.+++|+|++.+|++++ ++.|++||++.......+....               ..+...+.+++
T Consensus       592 ~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  669 (694)
T 3dm0_A          592 EGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN  669 (694)
T ss_dssp             TTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred             CCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence            222333333 346799999999988887765 5669999997654332221111               11122367777


Q ss_pred             ee--CCEEEEecCCCcEEEEecc
Q 046226          337 SV--ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       337 ~~--~~~l~s~~~dg~i~iwd~~  357 (434)
                      |+  +++|++|+.||.|++|++.
T Consensus       670 ~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          670 WSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EcCCCCEEEEEcCCCeEEEEecc
Confidence            75  6799999999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.7e-35  Score=273.12  Aligned_cols=292  Identities=13%  Similarity=0.083  Sum_probs=233.6

Q ss_pred             CCcccccCCCCCCCCCCCCCccCCCCCCCccccee-----------eeEEEeeccccEEEEEE--c----C---CEEEEE
Q 046226           49 SPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----------CISSVLKKDGQILCIAV--G----N---GFIYTG  108 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~--~----~---~~l~tg  108 (434)
                      ..+.+|...+.+..+.+  ..+++++.+..+..|+           ++..+.+|.+.|++++|  +    +   ++|++|
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            34667888888887765  7888888887766654           47778899999999999  6    7   899999


Q ss_pred             eCCCeEEEecCCCcee-----EeeccCC-----CccEEEEEEe----CC--E-EEEEEcCCeEEEeecCC------CCCc
Q 046226          109 SDSNVIRIWKQPEFTE-----CGRLKAK-----TSMVVAMEVS----HD--R-VYAAYGDGKIRVWRSTW------DNGV  165 (434)
Q Consensus       109 ~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~l~~~----~~--~-l~~~s~dg~i~vwd~~~------~~~~  165 (434)
                      +.||.|++||+.+++.     ...+..|     ...|.+++|+    |+  . +++++.||.|++||+..      ...+
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  167 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  167 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence            9999999999988776     7888888     5899999999    76  7 99999999999999987      4443


Q ss_pred             eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc---C---ccCe
Q 046226          166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA---H---SEPI  239 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~---~~~v  239 (434)
                      .....          ..+.........|...|.+++|+|++ +|++++.||.|++||+++++.+..+..   |   ...|
T Consensus       168 ~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i  236 (397)
T 1sq9_A          168 NWSPT----------LELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  236 (397)
T ss_dssp             CCCCE----------EEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             eccCc----------ceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence            30000          00000000112488999999999999 999999999999999999999999998   8   9999


Q ss_pred             EEEEEcCCC-eEEEEeCC---CeEEEEecccccCcceeEEEEEecc-------------cccCeEEEEEecCCCEEEEEc
Q 046226          240 NALVVADDG-VLYSASDD---ATVRVWRRYFYSENQLHTLILTLTA-------------KYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       240 ~~~~~~~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~  302 (434)
                      .+++|+|++ +|++++.|   +.|++||++      .......+..             |...|.+++|+|++++|++++
T Consensus       237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  310 (397)
T 1sq9_A          237 RSVKFSPQGSLLAIAHDSNSFGCITLYETE------FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  310 (397)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETT------TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             ceEEECCCCCEEEEEecCCCCceEEEEECC------CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence            999999999 99999999   999999987      2234455666             889999999999999999999


Q ss_pred             CCCeEEEEEcCcccccccccCc--ccCc---------------ccceEEEEeeC------------CEEEEecCCCcEEE
Q 046226          303 TDGYIHYWHKGWFSAQLQYGGA--LQGH---------------THAVMCLASVA------------NYVISGSADSTSRV  353 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~~~~~~~--~~~~---------------~~~v~~~~~~~------------~~l~s~~~dg~i~i  353 (434)
                      .||.|++||++.......+...  ..+|               ...|.+++|++            ++|++++.||.|++
T Consensus       311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i  390 (397)
T 1sq9_A          311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  390 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence            9999999999765433332100  0044               88999999973            49999999999999


Q ss_pred             EeccCC
Q 046226          354 WAREQD  359 (434)
Q Consensus       354 wd~~~~  359 (434)
                      ||+.++
T Consensus       391 w~~~~g  396 (397)
T 1sq9_A          391 FREAGG  396 (397)
T ss_dssp             EEEEC-
T ss_pred             EEcCCC
Confidence            999875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.2e-36  Score=271.52  Aligned_cols=286  Identities=15%  Similarity=0.248  Sum_probs=228.3

Q ss_pred             ccccCCCCCCCCCCC----CCccCCCCCCCcccceee-----eEEEee-----ccccEEEEEE--c----CCEEEEEeCC
Q 046226           52 SLHTSPLSSPRHPFN----PTAAAGSSSPETSSSYRC-----ISSVLK-----KDGQILCIAV--G----NGFIYTGSDS  111 (434)
Q Consensus        52 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~-----h~~~v~~~~~--~----~~~l~tg~~d  111 (434)
                      .+|..++.+..+.+.    ...+..+..+..+..|+.     +..+..     |.+.|++++|  +    +++|++|+.|
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   94 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR   94 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence            467888888777753    333444444445555554     344544     5578999999  4    5799999999


Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeC-C--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSH-D--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD  188 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
                      |.|++||+.+++.+..+.+|...|.+++|+| +  .+++++.||.|++||+..++....+.                   
T Consensus        95 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------  155 (366)
T 3k26_A           95 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG-------------------  155 (366)
T ss_dssp             CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC-------------------
T ss_pred             CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec-------------------
Confidence            9999999999999999999999999999998 4  89999999999999998665443331                   


Q ss_pred             cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc----------------------------CccCeE
Q 046226          189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA----------------------------HSEPIN  240 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------------------------~~~~v~  240 (434)
                      .+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+..                            |...|.
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  235 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD  235 (366)
T ss_dssp             STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred             ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence            0126999999999999999999999999999999998765544443                            899999


Q ss_pred             EEEEcCCCeEEEEeCCCeEEEEecccccC--------cceeEEEEEecccccCeEEEEEecC--CCEEEEEcCCCeEEEE
Q 046226          241 ALVVADDGVLYSASDDATVRVWRRYFYSE--------NQLHTLILTLTAKYSPVKTLTLTLD--DGLLYGGCTDGYIHYW  310 (434)
Q Consensus       241 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~  310 (434)
                      +++|+ ..++++++.|+.|++||++....        .........+..|...|.+++|+|+  +++|++|+.||.|++|
T Consensus       236 ~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw  314 (366)
T 3k26_A          236 CVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW  314 (366)
T ss_dssp             EEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred             EEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
Confidence            99999 44999999999999999873221        1123456677888899999999999  9999999999999999


Q ss_pred             EcCcccccccccCcccCc--ccceEEEEee--CCEEEEecCCCcEEEEecc
Q 046226          311 HKGWFSAQLQYGGALQGH--THAVMCLASV--ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       311 d~~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~  357 (434)
                      |+............+.+|  ...|.+++|+  +++|++++.||.|++||+.
T Consensus       315 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          315 DLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            998665443333355566  7899999996  6699999999999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-35  Score=270.33  Aligned_cols=267  Identities=8%  Similarity=-0.032  Sum_probs=209.4

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceee
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHV  168 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~  168 (434)
                      -...|.+++|  ||+++|+++.|++|+  |...+   ..+++|...|.+++|+|+.     .++.+.+|+.+   ....+
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~---~~~~~   80 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-----FENKLDFELAQ---QNGLL   80 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-----CCCTTTTSCCC---SSCSS
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-----CcceEEEEeCC---CceEe
Confidence            4577999999  999999999999999  64444   4557999999999999986     45555555432   22111


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc-----CeEEEE
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE-----PINALV  243 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~  243 (434)
                      .                     ..|...|.+++|+|+|.+|++++.||.|++||.+.  ++..+. |..     .|.+++
T Consensus        81 ~---------------------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sva  136 (588)
T 2j04_A           81 N---------------------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFE  136 (588)
T ss_dssp             T---------------------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEE
T ss_pred             e---------------------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEE
Confidence            1                     14678899999999999999999999999999644  667777 665     499999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEecccccCcc-eeEEEEEe----cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          244 VADDG-VLYSASDDATVRVWRRYFYSENQ-LHTLILTL----TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      |+|+| +|++|+.||+|++||+....... .......+    .+|...|.+++|+|+|  +++++.|+.|++||+.....
T Consensus       137 fSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          137 WNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             ECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred             EcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence            99999 99999999999999987321100 00123333    6677899999999999  88889999999999865442


Q ss_pred             cccccCcc-cCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEE--eecccCCCCCCccc
Q 046226          318 QLQYGGAL-QGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIA--FLGRFGEETEDEYC  394 (434)
Q Consensus       318 ~~~~~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~  394 (434)
                      . .....+ .+|...|.+++|+++.|++++ ++.|++||+.++   .......+|.+.|..++|  +|+         +.
T Consensus       215 ~-~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~---~~~~~~~gh~~~V~~va~~~s~d---------~~  280 (588)
T 2j04_A          215 Q-PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNY---SISSLKTGSLENFHIIPLNHEKE---------ST  280 (588)
T ss_dssp             C-CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTT---EEEEEECSCCSCCCEEEETTCSS---------CE
T ss_pred             c-cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCC---eEEEEEcCCCceEEEEEeeeCCC---------CC
Confidence            1 111224 378889999999988999997 699999999986   442333389999999999  888         89


Q ss_pred             EEEEeecCCeEEEEecC
Q 046226          395 TICTGSLDGVLKMWRVT  411 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~~~  411 (434)
                      .|+++++||+ ++|.++
T Consensus       281 ~La~a~edG~-klw~~d  296 (588)
T 2j04_A          281 ILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEEECSSCEE-EEEESS
T ss_pred             EEEEEcCCCC-EEEeec
Confidence            9999999999 999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-34  Score=258.98  Aligned_cols=288  Identities=17%  Similarity=0.228  Sum_probs=241.9

Q ss_pred             CCcccccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC
Q 046226           49 SPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE  121 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~  121 (434)
                      ..+.+|...+.+..+.+++..+++++.+..+..|     +++..+.+|.+.|.+++|  ++++|++++.||.|++||+.+
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  105 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN  105 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            3578899999999999999999999888776555     467889999999999999  799999999999999999999


Q ss_pred             ceeEeeccCCCccEEEEEEeCC--EEEEEEcC-----CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC
Q 046226          122 FTECGRLKAKTSMVVAMEVSHD--RVYAAYGD-----GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM  194 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (434)
                      ++.+..+. +...|.+++|+|+  .+++++.+     +.|++||+........+....    ......+       ..|.
T Consensus       106 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~----~~~~~~~-------~~~~  173 (369)
T 3zwl_B          106 GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS----EEPIHKI-------ITHE  173 (369)
T ss_dssp             CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC----SSCSEEE-------ECCT
T ss_pred             CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc----cceeeec-------cCCc
Confidence            99988887 8889999999997  88888888     999999998776544433211    1111111       2355


Q ss_pred             C--CeEEEEEecCCCEEEEEecCCcEEEEEcCC-CeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCc
Q 046226          195 G--PITSIAINVSDDTLYSASLDKTIKVWRIRD-SKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       195 ~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      .  .+.+++|+|++++|++++.||.|++||+.+ ++.+..+..|...|.+++|+|++ +|++++.|+.|++||++.    
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----  249 (369)
T 3zwl_B          174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST----  249 (369)
T ss_dssp             TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----
T ss_pred             CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC----
Confidence            5  999999999999999999999999999998 78889999999999999999999 999999999999999872    


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC--------------eEEEEEcCcccccccccCcccCcccceEEEE
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG--------------YIHYWHKGWFSAQLQYGGALQGHTHAVMCLA  336 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  336 (434)
                        ......+. +...+..++|+|+++++++++.++              .+++||+.....    ...+.+|...|.+++
T Consensus       250 --~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~v~~~~  322 (369)
T 3zwl_B          250 --LQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE----IGRVQGHFGPLNTVA  322 (369)
T ss_dssp             --CCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE----EEEEECCSSCEEEEE
T ss_pred             --Cceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc----hhheecccCcEEEEE
Confidence              22223333 667899999999999999999988              899999865433    234568999999999


Q ss_pred             ee--CCEEEEecCCCcEEEEeccCC
Q 046226          337 SV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       337 ~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      |+  +++|++++.||.|++|+++.+
T Consensus       323 ~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          323 ISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             ECCCCCEEEEEcCCCeEEEEECccc
Confidence            96  669999999999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-34  Score=254.92  Aligned_cols=277  Identities=19%  Similarity=0.249  Sum_probs=233.4

Q ss_pred             CCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEe
Q 046226           45 PRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIW  117 (434)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iw  117 (434)
                      .+....+.+|...+.+..+ ++...+++++.+..+..|+.     ...+..|.+.|.+++|  ++++|++|+.||.|++|
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence            3455677889999999888 78888999999988777664     6778889999999999  89999999999999999


Q ss_pred             cCCCc---eeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC
Q 046226          118 KQPEF---TECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM  194 (434)
Q Consensus       118 d~~~~---~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (434)
                      ++.+.   +.+..+..|...|.++.|.++.+++++.||.|++||  .......+                      ..|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~----------------------~~~~  142 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNL----------------------QAHN  142 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEE----------------------ECCS
T ss_pred             EeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEec----------------------ccCC
Confidence            98653   567778899999999999988999999999999999  22222222                      2599


Q ss_pred             CCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEccc-CccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcce
Q 046226          195 GPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQA-HSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       195 ~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      ..+.+++|.+ +++++++++.||.|++||  ..+.+..+.. |...+.+++|+|++.+++++.||.|++||++      .
T Consensus       143 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~------~  214 (313)
T 3odt_A          143 ASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMH------T  214 (313)
T ss_dssp             SCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETT------T
T ss_pred             CceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECC------c
Confidence            9999999998 899999999999999999  4566777776 8999999999999999999999999999987      2


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-EEEEecCCCcE
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-YVISGSADSTS  351 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i  351 (434)
                      ......+..|...|.+++|+|++ .|++++.||.|++||++....    ...+..|...|.+++|+++ .+++++.||.|
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i  289 (313)
T 3odt_A          215 GDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL----KQVITLPAISIWSVDCMSNGDIIVGSSDNLV  289 (313)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE----EEEEECSSSCEEEEEECTTSCEEEEETTSCE
T ss_pred             hhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce----eEEEeccCceEEEEEEccCCCEEEEeCCCcE
Confidence            34556677899999999999998 688999999999999875533    2345678889999999733 47789999999


Q ss_pred             EEEeccCC
Q 046226          352 RVWAREQD  359 (434)
Q Consensus       352 ~iwd~~~~  359 (434)
                      ++||++++
T Consensus       290 ~iw~~~~~  297 (313)
T 3odt_A          290 RIFSQEKS  297 (313)
T ss_dssp             EEEESCGG
T ss_pred             EEEeCCCC
Confidence            99999876

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=261.70  Aligned_cols=290  Identities=13%  Similarity=0.109  Sum_probs=227.1

Q ss_pred             CcccccCCCCCCCCCCCCCcc-CCCCC---CCcccceee-----eEE-EeeccccEEEEEE--c---CCEEEEEeCCCeE
Q 046226           50 PISLHTSPLSSPRHPFNPTAA-AGSSS---PETSSSYRC-----ISS-VLKKDGQILCIAV--G---NGFIYTGSDSNVI  114 (434)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~-----~~~-~~~h~~~v~~~~~--~---~~~l~tg~~dg~i  114 (434)
                      ...+|...+.+..+.+++..+ ++++.   +..+..|+.     ... ..+|.+.|.+++|  +   +++|++|+.||.|
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            446788999999888887555 45554   677777664     222 3479999999999  4   6999999999999


Q ss_pred             EEecCCCce-eEeeccCCCccEEEEEEe------CC--EEEEEEcCCeEEEeecCCCC-CceeeEeeeccCCCCceeEEE
Q 046226          115 RIWKQPEFT-ECGRLKAKTSMVVAMEVS------HD--RVYAAYGDGKIRVWRSTWDN-GVKHVKLATIPKTGGAVRNLI  184 (434)
Q Consensus       115 ~iwd~~~~~-~~~~~~~~~~~v~~l~~~------~~--~l~~~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~  184 (434)
                      ++||+.+++ .+..+.+|...|.++.|.      ++  .+++++.||.|++||+.... ....+....            
T Consensus        93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~------------  160 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ------------  160 (357)
T ss_dssp             EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT------------
T ss_pred             EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC------------
Confidence            999999888 888899999999999764      44  89999999999999998765 333332100            


Q ss_pred             eccccccCcCCCeEEEE----EecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcC---CC-eEEEEeCC
Q 046226          185 VGKDKMMKHMGPITSIA----INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD---DG-VLYSASDD  256 (434)
Q Consensus       185 ~~~~~~~~~~~~v~~~~----~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~l~s~~~d  256 (434)
                            ..+...|.+++    |++++++|++++.||.|++||+++++.... ..|...|.+++|+|   ++ .+++++.|
T Consensus       161 ------~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d  233 (357)
T 3i2n_A          161 ------GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLE  233 (357)
T ss_dssp             ------TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred             ------CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence                  01244788888    778999999999999999999999887554 56889999999999   77 99999999


Q ss_pred             CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC-EEEEEcCCCeEEEEEcCcccccc---------------c
Q 046226          257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGGCTDGYIHYWHKGWFSAQL---------------Q  320 (434)
Q Consensus       257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~---------------~  320 (434)
                      |.|++||++......... ......|...|.+++|+|++. +|++++.||.|++||++......               .
T Consensus       234 g~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~  312 (357)
T 3i2n_A          234 GKFHVFDMRTQHPTKGFA-SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVS  312 (357)
T ss_dssp             TEEEEEEEEEEETTTEEE-EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEE
T ss_pred             CeEEEEeCcCCCccccee-eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccc
Confidence            999999998433222221 224457889999999999998 89999999999999987543221               2


Q ss_pred             ccCcccCcccceEEEEee--CCEEE-EecCCCcEEEEeccCC
Q 046226          321 YGGALQGHTHAVMCLASV--ANYVI-SGSADSTSRVWAREQD  359 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~iwd~~~~  359 (434)
                      ....+.+|...|.+++|+  +++|+ +++.||.|++||+.+.
T Consensus       313 ~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          313 LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             eeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            334567899999999997  55676 8999999999999865

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=262.43  Aligned_cols=258  Identities=13%  Similarity=0.166  Sum_probs=203.1

Q ss_pred             EecCCCceeEeec-cCCCccEEEEEEeC-C--EEEEEEcCCeEEEeecCC---CCCceeeEeeeccCCCCceeEEEeccc
Q 046226          116 IWKQPEFTECGRL-KAKTSMVVAMEVSH-D--RVYAAYGDGKIRVWRSTW---DNGVKHVKLATIPKTGGAVRNLIVGKD  188 (434)
Q Consensus       116 iwd~~~~~~~~~~-~~~~~~v~~l~~~~-~--~l~~~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
                      .|+ .+++.+..+ .+|.+.|.+++|+| +  .|++|+.||.|++||+..   +.......                   
T Consensus        47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-------------------  106 (437)
T 3gre_A           47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL-------------------  106 (437)
T ss_dssp             GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE-------------------
T ss_pred             ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee-------------------
Confidence            388 567788888 88999999999999 6  899999999999999865   22111000                   


Q ss_pred             cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC---CCeeEEEccc------------CccCeEEEE--EcCCC-eE
Q 046226          189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIR---DSKCIETIQA------------HSEPINALV--VADDG-VL  250 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~-~l  250 (434)
                       ..+|...|.+++|+|++++|++|+.||.|++||++   +++.+..+..            +...+.++.  +++++ +|
T Consensus       107 -~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (437)
T 3gre_A          107 -TYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL  185 (437)
T ss_dssp             -EEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred             -eccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence             01489999999999999999999999999999995   5544443322            445666666  45677 99


Q ss_pred             EEEeCCCeEEEEecccccCcceeEEEEEecc--cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCccc-C
Q 046226          251 YSASDDATVRVWRRYFYSENQLHTLILTLTA--KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ-G  327 (434)
Q Consensus       251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~  327 (434)
                      ++++.|+.|++||++      .......+..  |...|.+++|+|++++|++|+.||.|++||++......    .+. .
T Consensus       186 ~~~~~d~~i~iwd~~------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~  255 (437)
T 3gre_A          186 VALTNLSRVIIFDIR------TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR----SWSFG  255 (437)
T ss_dssp             EEEETTSEEEEEETT------TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE----EEBCT
T ss_pred             EEEeCCCeEEEEeCC------CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE----EEecC
Confidence            999999999999997      2334445555  78899999999999999999999999999997543322    222 5


Q ss_pred             cccceEEEEee------CCEEEEecCCCcEEEEeccCCCceeeEEEeec--------------------------cccce
Q 046226          328 HTHAVMCLASV------ANYVISGSADSTSRVWAREQDGRHTMLAVLVG--------------------------HRGPI  375 (434)
Q Consensus       328 ~~~~v~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------------h~~~v  375 (434)
                      |...|.++.+.      +.+|++|+.||.|++||++++   .++..+.+                          |...|
T Consensus       256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v  332 (437)
T 3gre_A          256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNAL  332 (437)
T ss_dssp             TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGG
T ss_pred             CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCce
Confidence            67789999665      339999999999999999987   55555554                          55567


Q ss_pred             eEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          376 RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      ++++|+ +         +.+|++|+.||.|++||+.+++...
T Consensus       333 ~~l~~~-~---------~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          333 STISVS-N---------DKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             CCEEEE-T---------TEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             EEEEEC-C---------ceEEEecCCCCeEEEEECCCcccce
Confidence            777777 4         7899999999999999999887543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.1e-33  Score=259.72  Aligned_cols=259  Identities=12%  Similarity=0.101  Sum_probs=207.0

Q ss_pred             EecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccC
Q 046226          116 IWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK  192 (434)
Q Consensus       116 iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (434)
                      +|++...+....+.+|...|.+++|+|+   .+++++.||.|++||+...+....+.                    ..+
T Consensus        57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~~~  116 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ--------------------GMG  116 (383)
T ss_dssp             HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC--------------------CCS
T ss_pred             cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee--------------------cCC
Confidence            4455667778888999999999999986   69999999999999998766544432                    125


Q ss_pred             cCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEcccC---ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccc
Q 046226          193 HMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQAH---SEPINALVVADDG-VLYSASDDATVRVWRRYFY  267 (434)
Q Consensus       193 ~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~  267 (434)
                      |...|.+++|+| ++++|++++.|+.|++||+.+ +.+..+..+   ...|.+++|+|++ .|++++.|+.|++||++  
T Consensus       117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--  193 (383)
T 3ei3_B          117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--  193 (383)
T ss_dssp             TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--
T ss_pred             cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--
Confidence            999999999999 789999999999999999985 555555443   4789999999999 99999999999999985  


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecCCC-EEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC---CEEE
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA---NYVI  343 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~  343 (434)
                           ......+..|...|.+++|+|+++ +|++++.|+.|++||++...........+ +|...|.+++|++   ++|+
T Consensus       194 -----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~  267 (383)
T 3ei3_B          194 -----GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLL  267 (383)
T ss_dssp             -----SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEE
T ss_pred             -----CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEE
Confidence                 224556678999999999999998 99999999999999998644333333333 6888999999865   6999


Q ss_pred             EecCCCcEEEEeccCCCceeeEEEeecc-------ccc----------eeEEEEeecccCCCCCCcccEEEEeecCCeEE
Q 046226          344 SGSADSTSRVWAREQDGRHTMLAVLVGH-------RGP----------IRCAIAFLGRFGEETEDEYCTICTGSLDGVLK  406 (434)
Q Consensus       344 s~~~dg~i~iwd~~~~~~~~~~~~~~~h-------~~~----------v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~  406 (434)
                      +++.|+.|++||++++..   ...+.+|       ...          +..++++|+         +++  +|+.||.|+
T Consensus       268 ~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d---------g~~--s~s~d~~i~  333 (383)
T 3ei3_B          268 TTDQRNEIRVYSSYDWSK---PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD---------DQL--LLNDKRTID  333 (383)
T ss_dssp             EEESSSEEEEEETTBTTS---CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC---------TTT--CTTCCCCEE
T ss_pred             EEcCCCcEEEEECCCCcc---ccccccccccccccccceEEeccCCCCceEEEecCC---------ccc--ccCCCCeEE
Confidence            999999999999998743   2333333       233          334555555         665  888999999


Q ss_pred             EEecCCCCccc
Q 046226          407 MWRVTRPKSSC  417 (434)
Q Consensus       407 iw~~~~~~~~~  417 (434)
                      +||+.+++.+.
T Consensus       334 iwd~~~~~~~~  344 (383)
T 3ei3_B          334 IYDANSGGLVH  344 (383)
T ss_dssp             EEETTTCCEEE
T ss_pred             EEecCCCceee
Confidence            99999887643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.3e-32  Score=255.46  Aligned_cols=252  Identities=16%  Similarity=0.230  Sum_probs=208.5

Q ss_pred             CCcccce-----eeeEEE--eeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEE
Q 046226           76 PETSSSY-----RCISSV--LKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVY  146 (434)
Q Consensus        76 ~~~~~~~-----~~~~~~--~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~  146 (434)
                      +.+++.|     +++..+  .+|.+.|+||+|  +|++|++|+.||.|+|||+.+++.+..+.+|...+.++.+++..++
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~  203 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS  203 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEE
Confidence            5555555     445554  467889999999  8999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC
Q 046226          147 AAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS  226 (434)
Q Consensus       147 ~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  226 (434)
                      +++.|+.+++||..........                     +.+|...+..+.++|+++++++++.|+.|++||..++
T Consensus       204 sgs~d~~i~~~d~~~~~~~~~~---------------------~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          204 SGSRSGHIHHHDVRVAEHHVAT---------------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             EEETTSEEEEEETTSSSCEEEE---------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EEeCCCceeEeeecccceeeEE---------------------ecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            9999999999998754332211                     1269999999999999999999999999999999876


Q ss_pred             e----eEEEcccCccCeEEEEEcCCC--eEEE--EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226          227 K----CIETIQAHSEPINALVVADDG--VLYS--ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL  298 (434)
Q Consensus       227 ~----~~~~~~~~~~~v~~~~~~~~~--~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  298 (434)
                      +    .+.....|...|.+++|+|.+  .+++  |+.|+.|++||+.      .......+. +...+.++.|+++++.+
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~------t~~~~~~~~-~~~~v~~~~~~~~~~~l  335 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC------SGACLSAVD-AHSQVCSILWSPHYKEL  335 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT------TTEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC------ccccceeec-cccceeeeeecCCCCeE
Confidence            5    355667799999999999977  5554  4579999999987      222333333 34678999999999988


Q ss_pred             EEEc--CCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          299 YGGC--TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       299 ~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ++++  .|+.|+|||+....    ....+.+|...|.+++|+  |++|++|+.|++|+|||+...
T Consensus       336 v~~sg~~d~~I~iwd~~~~~----~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          336 ISGHGFAQNQLVIWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             EEEECTTTCCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             EEEEecCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            8764  79999999986543    334567999999999996  679999999999999999865

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-34  Score=282.77  Aligned_cols=253  Identities=15%  Similarity=0.164  Sum_probs=208.0

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC--CceeEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEE
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP--EFTECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRV  156 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~v  156 (434)
                      +..+.+|.+.|++++|  ++++|++|+.||.|+|||+.  +++.+..+.+|...|.+++|+++    .+++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            4567899999999999  89999999999999999987  56778889999999999999853    8999999999999


Q ss_pred             eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC--CCEEEEEecCCcEEEEEcCCC--eeEEEc
Q 046226          157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS--DDTLYSASLDKTIKVWRIRDS--KCIETI  232 (434)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~--~~~~~~  232 (434)
                      ||+..+......                    .+.+|...|.+++|+|+  ++++++|+.||.|++||+.++  .....+
T Consensus        82 wd~~~~~~~~~~--------------------~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~  141 (753)
T 3jro_A           82 WKEENGRWSQIA--------------------VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII  141 (753)
T ss_dssp             EEEETTEEEEEE--------------------EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred             EECCCCcccccc--------------------cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe
Confidence            998765311111                    11269999999999999  999999999999999999877  344566


Q ss_pred             ccCccCeEEEEEcC-------------CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC---C
Q 046226          233 QAHSEPINALVVAD-------------DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD---D  295 (434)
Q Consensus       233 ~~~~~~v~~~~~~~-------------~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~  295 (434)
                      ..|...|.+++|+|             ++ .+++|+.||.|++||++  ...........+..|...|.+++|+|+   +
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~  219 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN--SDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE--TTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc--CCcccceeeeeecCCCCcEEEEEeccCCCCC
Confidence            78999999999999             35 99999999999999998  333445666778899999999999999   8


Q ss_pred             CEEEEEcCCCeEEEEEcCccccccc-ccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          296 GLLYGGCTDGYIHYWHKGWFSAQLQ-YGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       296 ~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ++|++++.||.|++||++....... .......|...|.+++|+  +++|++|+.||.|++|++..+
T Consensus       220 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            9999999999999999976532211 223345688889888885  669999999999999999854

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-34  Score=270.81  Aligned_cols=261  Identities=11%  Similarity=0.031  Sum_probs=194.6

Q ss_pred             ccccEEEEEE--cC---------CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEe
Q 046226           91 KDGQILCIAV--GN---------GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVW  157 (434)
Q Consensus        91 h~~~v~~~~~--~~---------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vw  157 (434)
                      +.+.|.+|+|  ++         ++||+|+.++..                  .     ..+|+  .+++++.|++|+||
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------~-----~~~~~~~~laS~s~D~tI~iW  188 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------E-----PLNEHLEMFDKEKHSSCIQIF  188 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------C-----ccchhhhhhccCCCCceEEEE
Confidence            7899999999  54         799999876521                  0     12454  67889999999999


Q ss_pred             ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC------CCEEEEEecCCcEEEEEcCCCee---
Q 046226          158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS------DDTLYSASLDKTIKVWRIRDSKC---  228 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~---  228 (434)
                      |+..++.......                  .+..|.+.|.+++|+|+      +.+|++++.||+|++||+.+++.   
T Consensus       189 d~~~~~~~~~~~~------------------~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~  250 (524)
T 2j04_B          189 KMNTSTLHCVKVQ------------------TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH  250 (524)
T ss_dssp             EEETTTCCEEEEE------------------EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred             EccCCCCCceEEE------------------EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence            9876543211100                  01147789999999996      57999999999999999986642   


Q ss_pred             --------EEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEE--EEecCC-CE
Q 046226          229 --------IETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTL--TLTLDD-GL  297 (434)
Q Consensus       229 --------~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~  297 (434)
                              ...+.+|...|.+++|++++.|++|+.||+|++||++...     .....+..|...|.++  +|++++ .+
T Consensus       251 ~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~-----~~~~~~~~H~~~V~sv~~~~s~~g~~~  325 (524)
T 2j04_B          251 VFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE-----VPSFYDQVHDSYILSVSTAYSDFEDTV  325 (524)
T ss_dssp             EEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS-----SCSEEEECSSSCEEEEEEECCTTSCCE
T ss_pred             cceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC-----CceEEeecccccEEEEEEEcCCCCCeE
Confidence                    2367789999999999987899999999999999997221     1223466899999999  568887 89


Q ss_pred             EEEEcCCCeEEEEEcCcccccccccCcccCccc--ceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecccc
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH--AVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG  373 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  373 (434)
                      |++|+.|++|+|||++......    .+.+|..  .|.+++|+  +..+++++.|++|++||++++   .++..+.+|.+
T Consensus       326 laS~S~D~tvklWD~~~~~~~~----~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~  398 (524)
T 2j04_B          326 VSTVAVDGYFYIFNPKDIATTK----TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRET  398 (524)
T ss_dssp             EEEEETTSEEEEECGGGHHHHC----EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSS
T ss_pred             EEEeccCCeEEEEECCCCCccc----ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCC
Confidence            9999999999999987544322    2334432  46677776  568999999999999999987   56667889999


Q ss_pred             ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          374 PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       374 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      .|++++|+|+         +.+|++|+.||+|++|++...
T Consensus       399 ~V~sva~Sp~---------g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          399 TITAIGVSRL---------HPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             CEEEEECCSS---------CCBCEEEETTTEEECCBSCSS
T ss_pred             ceEEEEeCCC---------CCeEEEEECCCEEEEEechHh
Confidence            9999999999         899999999999999998643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-33  Score=256.94  Aligned_cols=275  Identities=15%  Similarity=0.122  Sum_probs=209.5

Q ss_pred             CCCCCCCCCCCCCccCCCCCCCc-------ccceee---------------eEEEeeccccEEEEEEcCCEEEEEe----
Q 046226           56 SPLSSPRHPFNPTAAAGSSSPET-------SSSYRC---------------ISSVLKKDGQILCIAVGNGFIYTGS----  109 (434)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---------------~~~~~~h~~~v~~~~~~~~~l~tg~----  109 (434)
                      .|+++..|.+++..+++++.+.+       ++.|+.               ...+.+|.+.|++++++++.+++|.    
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~   94 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS   94 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence            46788888888888888654332       444443               1245678899999999888888774    


Q ss_pred             -------CCCeEEEecCCCcee----Eee-----ccCCCccEEEEEEeCC--EEEEEE--cCCeEEEeecCCCCCceeeE
Q 046226          110 -------DSNVIRIWKQPEFTE----CGR-----LKAKTSMVVAMEVSHD--RVYAAY--GDGKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus       110 -------~dg~i~iwd~~~~~~----~~~-----~~~~~~~v~~l~~~~~--~l~~~s--~dg~i~vwd~~~~~~~~~~~  169 (434)
                             .|+.+++|++.+...    ...     ...+...+.+++|+||  ++++|+  .|++|++||+.+.+.+..+ 
T Consensus        95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-  173 (365)
T 4h5i_A           95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-  173 (365)
T ss_dssp             HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-
T ss_pred             cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-
Confidence                   467899998755321    111     1234567899999998  555554  5899999999876555444 


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE--EcccCccCeEEEEEcCC
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE--TIQAHSEPINALVVADD  247 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~  247 (434)
                                            .|...|.+++|+|++++|++++.+ .+++|+..+++.+.  ....|...|.+++|+|+
T Consensus       174 ----------------------~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd  230 (365)
T 4h5i_A          174 ----------------------ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIAD  230 (365)
T ss_dssp             ----------------------ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEET
T ss_pred             ----------------------CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCC
Confidence                                  378889999999999999999854 57777777776553  34568889999999999


Q ss_pred             C-eEEEEeCCC----eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccccc
Q 046226          248 G-VLYSASDDA----TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYG  322 (434)
Q Consensus       248 ~-~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  322 (434)
                      + .+++++.|+    .+++||+.  ...........+..|...|++++|+|+|++|++|+.|+.|+|||+++.+....  
T Consensus       231 g~~l~~~s~d~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~--  306 (365)
T 4h5i_A          231 DTVLIAASLKKGKGIVLTKISIK--SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI--  306 (365)
T ss_dssp             TEEEEEEEESSSCCEEEEEEEEE--TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--
T ss_pred             CCEEEEEecCCcceeEEeecccc--cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE--
Confidence            9 888888777    67888876  22223334456778889999999999999999999999999999875443222  


Q ss_pred             CcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          323 GALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       323 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                       .+.+|...|++++|+  |++|++|+.|++|+|||+...
T Consensus       307 -~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          307 -FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             -ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence             246899999999996  679999999999999999754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=254.54  Aligned_cols=277  Identities=10%  Similarity=0.016  Sum_probs=202.7

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCce
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAV  180 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      ++.+|++|+.||.|++||+.+++.+..+.  ...|.++.++|+ +++++.|+.|++|+......+...      ..+..+
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~------~~~~~~  117 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDS------KTNKVL  117 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEET------TTCCEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeec------CCccee
Confidence            78899999999999999999998887776  567888889998 999999999999987642111000      111112


Q ss_pred             eEEEeccccccCcCCCeEEEEEec--CCCEEEEEecCCcEEEEEcCCCeeEEEccc-CccCeEEEEEcCCC-eEEEEeCC
Q 046226          181 RNLIVGKDKMMKHMGPITSIAINV--SDDTLYSASLDKTIKVWRIRDSKCIETIQA-HSEPINALVVADDG-VLYSASDD  256 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~s~~~d  256 (434)
                      ....      .+|...|.+++|+|  ++++|++++.||.|++||+++++.+..... +...+.+++|+|++ +|++|+.|
T Consensus       118 ~~~~------~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          118 REIE------VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             EEEE------CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred             EEee------cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence            2221      25778999999999  999999999999999999999988776643 55689999999999 99999999


Q ss_pred             CeEEEEecccccCcceeEEEEEecc-cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce--E
Q 046226          257 ATVRVWRRYFYSENQLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV--M  333 (434)
Q Consensus       257 g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~  333 (434)
                      |.|++||++...  .   ....+.. |..+|.+++|+|++.+|++++ |+.|++||++.......+ ..+..|...+  .
T Consensus       192 g~i~iwd~~~~~--~---~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~  264 (343)
T 3lrv_A          192 GILDVYNLSSPD--Q---ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY-PTYTIPEFKTGTV  264 (343)
T ss_dssp             SCEEEEESSCTT--S---CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS-CCCBC-----CCE
T ss_pred             CEEEEEECCCCC--C---CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee-cccccccccccce
Confidence            999999998221  1   1133455 889999999999999999999 559999999865433222 1222233333  2


Q ss_pred             EEEee--CCEEEEecC-CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          334 CLASV--ANYVISGSA-DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       334 ~~~~~--~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                      +++|+  +++|++++. |+.|++|++......   ...    .++..+.|.+..      .+...|++++.||.+.++-.
T Consensus       265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~---~~~----~~~~~~~~~~~~------~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN---WTK----DEESALCLQSDT------ADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCS---EEE----EEEEECCC----------CCCCEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCCEEEEecCCCCcEEEEEEcccccc---eEe----cCceeEecCccc------cccceeEEEecCCceEEEEe
Confidence            46665  779999888 999999999765321   111    556777787710      01678999999999998865


Q ss_pred             CC
Q 046226          411 TR  412 (434)
Q Consensus       411 ~~  412 (434)
                      ..
T Consensus       332 ~~  333 (343)
T 3lrv_A          332 TN  333 (343)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-32  Score=256.72  Aligned_cols=285  Identities=14%  Similarity=0.050  Sum_probs=220.7

Q ss_pred             cccEEEEEE--cCCEEEEEeCCCeEEEecCCCce---eEeeccC------------------------------------
Q 046226           92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT---ECGRLKA------------------------------------  130 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~------------------------------------  130 (434)
                      ..++.|++|  +|++|+++ .++.|++||+.+++   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            346788889  78866666 57899999998887   5555442                                    


Q ss_pred             ------------------CCccEEEEEEeCC--EE-EEEEcCCeEEEeecC--CCCCceeeEeeeccCCCCceeEEEecc
Q 046226          131 ------------------KTSMVVAMEVSHD--RV-YAAYGDGKIRVWRST--WDNGVKHVKLATIPKTGGAVRNLIVGK  187 (434)
Q Consensus       131 ------------------~~~~v~~l~~~~~--~l-~~~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
                                        |...|.+++|+|+  .| ++++.||.|++||+.  .++....+..                 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-----------------  145 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-----------------  145 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-----------------
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-----------------
Confidence                              3337999999997  54 788889999999998  5555544421                 


Q ss_pred             ccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE----EcccCccCeEEEEEcCC---C-eEEEEeCCCeE
Q 046226          188 DKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE----TIQAHSEPINALVVADD---G-VLYSASDDATV  259 (434)
Q Consensus       188 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~-~l~s~~~dg~i  259 (434)
                         ..|...|.+++|+|++++|++|+.+|.|++|++.+++...    .+.+|...|.+++|+|+   + +|++++.|+.|
T Consensus       146 ---~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i  222 (450)
T 2vdu_B          146 ---FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHI  222 (450)
T ss_dssp             ---EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCE
T ss_pred             ---ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcE
Confidence               1377899999999999999999999999999998877544    77889999999999999   8 99999999999


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc-------c-------
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA-------L-------  325 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~-------  325 (434)
                      ++||++..  .   .......+|...|.+++|+ ++++|++++.|+.|++||++.......+...       .       
T Consensus       223 ~vwd~~~~--~---~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (450)
T 2vdu_B          223 KISHYPQC--F---IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP  296 (450)
T ss_dssp             EEEEESCT--T---CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--
T ss_pred             EEEECCCC--c---eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccc
Confidence            99998721  1   1222255788999999999 9999999999999999999765433222100       0       


Q ss_pred             -------cCcccceEEEEee--CCEEEEec-CCCcEEEEec--cCCCceeeEEEeeccccceeEEEEeecccCCCCCCcc
Q 046226          326 -------QGHTHAVMCLASV--ANYVISGS-ADSTSRVWAR--EQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       326 -------~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  393 (434)
                             ......|.++.+.  +++|++++ .|+.|++|++  ..+.....+..+..| +.|.+++|+|+         +
T Consensus       297 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~---------~  366 (450)
T 2vdu_B          297 RFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND---------E  366 (450)
T ss_dssp             --------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT---------E
T ss_pred             cccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC---------c
Confidence                   0223467778775  67888888 8999999999  555555777888888 88999999996         5


Q ss_pred             cEEEEeec------CCeEEEEecCCC
Q 046226          394 CTICTGSL------DGVLKMWRVTRP  413 (434)
Q Consensus       394 ~~l~s~~~------Dg~v~iw~~~~~  413 (434)
                      .++++++.      +..|.+|.+...
T Consensus       367 ~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          367 FQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             EEEEEecccCCCCCCcceEEEEEEcC
Confidence            55555553      556899987654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.5e-32  Score=238.03  Aligned_cols=293  Identities=12%  Similarity=0.062  Sum_probs=202.1

Q ss_pred             cceeeeEEEeecccc----EEEEEE--cC---CEEEEEeCCCeEEEecCCCc---eeEeeccCCCccEEEEEEeCC---E
Q 046226           80 SSYRCISSVLKKDGQ----ILCIAV--GN---GFIYTGSDSNVIRIWKQPEF---TECGRLKAKTSMVVAMEVSHD---R  144 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~----v~~~~~--~~---~~l~tg~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~---~  144 (434)
                      ...+.+..++...+.    +.++-|  .+   -.++++++ ..|++|+..++   +++++++.|+.+|..+.+.|+   .
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  101 (356)
T 2w18_A           23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL  101 (356)
T ss_dssp             -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred             ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence            346667777776553    455555  22   25677764 69999999888   899999999999999999996   3


Q ss_pred             EEEEEcCCeEE-EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe--cCCcEEEE
Q 046226          145 VYAAYGDGKIR-VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS--LDKTIKVW  221 (434)
Q Consensus       145 l~~~s~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vw  221 (434)
                      +.++-.+=.+. ++-+...           +........+..     .+|...|..+   ++++++.+++  .|+.|++|
T Consensus       102 ~~~~~~~~~~~~v~sla~s-----------pd~~~~~~~l~s-----~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~  162 (356)
T 2w18_A          102 VCVALGNLEIREIRALFCS-----------SDDESEKQVLLK-----SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVM  162 (356)
T ss_dssp             EEEEECSSSEEEEEEECC-----------------CCEEEEE-----EEEEEEEEEE---TTTEEEEEESSSTTCEEEEE
T ss_pred             eeeeeccccccceEEEEEC-----------CCccccccEEEe-----CCCeEEEEec---CCCcEEEecccCCCCcEEEE
Confidence            33332221111 1111100           000000000000     1344445544   5566555543  59999999


Q ss_pred             Ec-CCCeeEEEcccCccCeEEEEEcC---CC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccc---ccCeEEEEEec
Q 046226          222 RI-RDSKCIETIQAHSEPINALVVAD---DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK---YSPVKTLTLTL  293 (434)
Q Consensus       222 d~-~~~~~~~~~~~~~~~v~~~~~~~---~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~  293 (434)
                      ++ .+++.+..+..|...+..++|++   ++ .|++++.|++|++||+.      ..+.+..+.+|   ...+.+++|+|
T Consensus       163 ~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~------TGk~l~tL~g~~~~v~~v~~vafSp  236 (356)
T 2w18_A          163 TFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK------TGQLLKKMHIDDSYQASVCHKAYSE  236 (356)
T ss_dssp             EECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT------TCCEEEEEECCC---CCCEEEEEEE
T ss_pred             EECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC------CCcEEEEEcCCCcceeeeEEEEECC
Confidence            99 55888888889999999999998   55 99999999999999997      23344444443   23677889999


Q ss_pred             CCCEE------------EEEcCCCeEEEEEcCcccccccccCc-ccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCC
Q 046226          294 DDGLL------------YGGCTDGYIHYWHKGWFSAQLQYGGA-LQGHTHAVMCLASVANYVISGSADSTSRVWAREQDG  360 (434)
Q Consensus       294 ~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~  360 (434)
                      +|.++            ++|+.|++|++||..+......+... ..+|...+.+..+++.++++|+.|++|+|||+.++ 
T Consensus       237 dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG-  315 (356)
T 2w18_A          237 MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG-  315 (356)
T ss_dssp             TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC-
T ss_pred             CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC-
Confidence            99876            56788999999998755432221111 24676667777778899999999999999999998 


Q ss_pred             ceeeEEEeecccccee-EEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          361 RHTMLAVLVGHRGPIR-CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       361 ~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                        +++.++.+|...+. +++|+|+         |++|++|+.|++|+|||+
T Consensus       316 --k~l~tL~gH~~~vvs~vafSPD---------G~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          316 --QCTALLPPVSDQHWSFVKWSGT---------DSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --SEEEEECCC--CCCCEEEECSS---------SSEEEEECTTSCEEEEEE
T ss_pred             --cEEEEecCCCCCeEEEEEECCC---------CCEEEEEECCCcEEEecC
Confidence              88899999988765 5899999         999999999999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.8e-33  Score=252.25  Aligned_cols=290  Identities=10%  Similarity=0.071  Sum_probs=205.4

Q ss_pred             cceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC--CEE-EEEEcCCeE
Q 046226           80 SSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH--DRV-YAAYGDGKI  154 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~s~dg~i  154 (434)
                      .+...+.++..|.+.|+|++|  +|++|++|+.|+ ++|||+.+++.......+  .+..+++.+  +.+ ++++.|+.|
T Consensus         7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A            7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             ------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEE
T ss_pred             cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEE
Confidence            344556667889999999999  899999998775 789999988776655433  355555654  455 567778999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcc
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQ  233 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~  233 (434)
                      ++||+.+++.+..+                       .+...|.+++|+++  .++++. |+.|++||+.++ +.+..+.
T Consensus        84 ~iWd~~~~~~~~~~-----------------------~~~~~v~~v~~~~~--~~~~~~-~~~i~i~d~~~~~~~~~~~~  137 (355)
T 3vu4_A           84 HIWDDVKKQDVSRI-----------------------KVDAPVKDLFLSRE--FIVVSY-GDVISVFKFGNPWKRITDDI  137 (355)
T ss_dssp             EEEETTTTEEEEEE-----------------------ECSSCEEEEEECSS--EEEEEE-TTEEEEEESSTTCCBSSCCE
T ss_pred             EEEECCCCcEEEEE-----------------------ECCCceEEEEEcCC--EEEEEE-cCEEEEEECCCCceeeEEec
Confidence            99999877655544                       36778999999865  344444 789999999988 6666665


Q ss_pred             cCccCeEEEEEcCCCeEEE--EeCCCeEEEEecccccCc---------ceeEE-EEEecccccCeEEEEEecCCCEEEEE
Q 046226          234 AHSEPINALVVADDGVLYS--ASDDATVRVWRRYFYSEN---------QLHTL-ILTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~---------~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      .   ....+++++ ..++.  |+.||.|++||+......         ..... ...+.+|...|.+++|+|++++|++|
T Consensus       138 ~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~  213 (355)
T 3vu4_A          138 R---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC  213 (355)
T ss_dssp             E---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             c---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence            4   444556666 54444  689999999998732100         00011 46678999999999999999999999


Q ss_pred             cCCCe-EEEEEcCcccccccccCccc-C-cccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEe--------
Q 046226          302 CTDGY-IHYWHKGWFSAQLQYGGALQ-G-HTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVL--------  368 (434)
Q Consensus       302 ~~dg~-i~i~d~~~~~~~~~~~~~~~-~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------  368 (434)
                      +.||+ |++||++......    .+. + |...|.+++|+  +++|++++.|+.|++||++..... ....+        
T Consensus       214 s~d~~~v~iwd~~~~~~~~----~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~-~~~~~~~~~~~~~  288 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDGVLVR----EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDN-KRHALKGWINMKY  288 (355)
T ss_dssp             ETTCSEEEEEETTTCCEEE----EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCC-CSEETTTTEECCC
T ss_pred             eCCCCEEEEEECCCCcEEE----EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCc-ccccccceeeccc
Confidence            99998 9999997554332    343 4 88999999996  679999999999999999765211 11111        


Q ss_pred             -------------eccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          369 -------------VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       369 -------------~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                                   ..+......++|+++         +.+|++++.||.+++|++..++..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d---------~~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          289 FQSEWSLCNFKLSVDKHVRGCKIAWISE---------SSLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             CCCSSCSEEEECCCCTTCCCCEEEESSS---------SEEEEEETTTTEEEEEEEEEETTT
T ss_pred             cccccceeEEEeccCCCCCceEEEEeCC---------CCEEEEEeCCCeEEEEEEEcCCCC
Confidence                         111223466888888         899999999999999999876543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9e-33  Score=258.91  Aligned_cols=256  Identities=14%  Similarity=0.195  Sum_probs=195.5

Q ss_pred             CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC------------CC
Q 046226          131 KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM------------GP  196 (434)
Q Consensus       131 ~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  196 (434)
                      +.+.|.+++|+|+  .|++|+.||.|++||+.........       .......    ...+.+|.            ..
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-------~~~~~~~----~~~~~~h~~~~~~~~~~~~~~~   95 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-------SRGEYNV----YSTFQSHEPEFDYLKSLEIEEK   95 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-------CCCCEEE----EEEEECCCCEEEGGGTEEECCC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-------cccceeE----ecccccccccccccccccccCc
Confidence            5789999999997  8999999999999999865421100       0000000    00122576            88


Q ss_pred             eEEEEEecCC--CEEEEEecCCcEEEEEcCCCeeE---------------------------------------EE-ccc
Q 046226          197 ITSIAINVSD--DTLYSASLDKTIKVWRIRDSKCI---------------------------------------ET-IQA  234 (434)
Q Consensus       197 v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~---------------------------------------~~-~~~  234 (434)
                      |.+++|+|++  .+|++++.|+.|++||+.+++..                                       .. ..+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            9999999998  79999999999999999764432                                       12 357


Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE-------EecccccCeEEEEEecCC-CEEEEEcCCC
Q 046226          235 HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL-------TLTAKYSPVKTLTLTLDD-GLLYGGCTDG  305 (434)
Q Consensus       235 ~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg  305 (434)
                      |...|.+++|+|++ +|++| .|+.|++||++.     ......       .+..|...|.+++|+|++ ++|++|+.||
T Consensus       176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  249 (447)
T 3dw8_B          176 HTYHINSISINSDYETYLSA-DDLRINLWHLEI-----TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG  249 (447)
T ss_dssp             CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE-----EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC-----CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence            99999999999999 88887 899999999871     122222       356788899999999998 9999999999


Q ss_pred             eEEEEEcCcccccccccCcccCccc------------ceEEEEee--CCEEEEecCCCcEEEEeccC-CCceeeEEEeec
Q 046226          306 YIHYWHKGWFSAQLQYGGALQGHTH------------AVMCLASV--ANYVISGSADSTSRVWAREQ-DGRHTMLAVLVG  370 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~~~~~------------~v~~~~~~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~  370 (434)
                      .|++||++...........+.+|..            .|.+++|+  +++|++++. +.|++||++. +   .++..+.+
T Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~---~~~~~~~~  325 (447)
T 3dw8_B          250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN---RPVETYQV  325 (447)
T ss_dssp             CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS---SCSCCEES
T ss_pred             eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc---cccceeec
Confidence            9999999865542222344556654            89999986  669999998 9999999987 4   56677778


Q ss_pred             cccc---------------eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          371 HRGP---------------IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       371 h~~~---------------v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      |...               +..++|+|+         +.+|++|+.||.|++||+.+++..
T Consensus       326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~---------~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          326 HEYLRSKLCSLYENDCIFDKFECCWNGS---------DSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             CGGGTTTHHHHHHTSGGGCCCCEEECTT---------SSEEEEECSTTEEEEEETTTCCEE
T ss_pred             cccccccccccccccccccceEEEECCC---------CCEEEEeccCCEEEEEEcCCCcce
Confidence            8643               234899998         899999999999999999987653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=281.14  Aligned_cols=256  Identities=18%  Similarity=0.216  Sum_probs=210.1

Q ss_pred             eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe
Q 046226          126 GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN  203 (434)
Q Consensus       126 ~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  203 (434)
                      ..+.+|.+.|++++|+|+  .+++|+.||.|++||+..+......                    .+.+|.+.|.+++|+
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~--------------------~l~~h~~~V~~l~~s   62 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID--------------------TLTGHEGPVWRVDWA   62 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEE--------------------EECCCSSCEEEEEEC
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccce--------------------eccCCcCceEEEEec
Confidence            457899999999999987  7999999999999998633211111                    123699999999999


Q ss_pred             cC--CCEEEEEecCCcEEEEEcCCCe--eEEEcccCccCeEEEEEcCC--C-eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226          204 VS--DDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADD--G-VLYSASDDATVRVWRRYFYSENQLHTLI  276 (434)
Q Consensus       204 ~~--~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~  276 (434)
                      ++  +++|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  + .+++|+.||.|++||++....    ...
T Consensus        63 ~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~  138 (753)
T 3jro_A           63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSP  138 (753)
T ss_dssp             CTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----CCC
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----cce
Confidence            88  9999999999999999999987  77888889999999999998  7 999999999999999983211    122


Q ss_pred             EEecccccCeEEEEEec-------------CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-----
Q 046226          277 LTLTAKYSPVKTLTLTL-------------DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-----  338 (434)
Q Consensus       277 ~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-----  338 (434)
                      .....|...|.+++|+|             ++.+|++|+.||.|++||++...........+.+|...|.+++|+     
T Consensus       139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  218 (753)
T 3jro_A          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (753)
T ss_dssp             EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence            34567889999999999             589999999999999999986655545556777899999999986     


Q ss_pred             CCEEEEecCCCcEEEEeccCCCce--eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          339 ANYVISGSADSTSRVWAREQDGRH--TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       339 ~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      +++|++|+.||.|++||+.++...  ..+.....|.+.|++++|+|+         +.+|++|+.||.|++|++..+.
T Consensus       219 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd---------g~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS---------GNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTT---------TCCEEEECSSSCEECCBCCSSS
T ss_pred             CCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCC---------CCEEEEEcCCCEEEEEecCCCC
Confidence            568999999999999999886321  133344568999999999999         8999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-32  Score=255.56  Aligned_cols=261  Identities=16%  Similarity=0.172  Sum_probs=205.7

Q ss_pred             eeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE
Q 046226          126 GRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI  202 (434)
Q Consensus       126 ~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  202 (434)
                      .....|.+.|++++|+|+   .+++++.||.|++||+........     ..........       +.+|...|.+++|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----~~~~~~~~~~-------~~~h~~~v~~l~~  189 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----PSGECQPDLR-------LRGHQKEGYGLSW  189 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----TTCCCCCSEE-------EECCSSCCCCEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----ccccCCCcEE-------ecCCCCCeEEEEe
Confidence            345578999999999996   688888899999999975311100     0000111111       1269999999999


Q ss_pred             ecCCC-EEEEEecCCcEEEEEcCCCee-------EEEcccCccCeEEEEEcCC-C-eEEEEeCCCeEEEEecccccCcce
Q 046226          203 NVSDD-TLYSASLDKTIKVWRIRDSKC-------IETIQAHSEPINALVVADD-G-VLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       203 ~~~~~-~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      +|++. +|++|+.||.|++||+.++..       ...+..|...|.+++|+|+ + +|++++.||.|++||++....   
T Consensus       190 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---  266 (430)
T 2xyi_A          190 NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---  266 (430)
T ss_dssp             CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---
T ss_pred             CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---
Confidence            99988 999999999999999987322       4566789999999999994 4 899999999999999983211   


Q ss_pred             eEEEEEecccccCeEEEEEecCCC-EEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC---CEEEEecCC
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDG-LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA---NYVISGSAD  348 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~d  348 (434)
                      ......+..|...|++++|+|++. +|++|+.||.|++||++....   ....+..|...|.++.|++   .+|++++.|
T Consensus       267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d  343 (430)
T 2xyi_A          267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWSPHNETILASSGTD  343 (430)
T ss_dssp             SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeecCCCCEEEEEECCCCCCEEEEEeCC
Confidence            123334457889999999999887 688999999999999975332   2345667899999999973   379999999


Q ss_pred             CcEEEEeccCCCc-----------eeeEEEeeccccceeEEEEeecccCCCCCCccc-EEEEeecCCeEEEEecCCC
Q 046226          349 STSRVWAREQDGR-----------HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC-TICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       349 g~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~iw~~~~~  413 (434)
                      |.|+|||+.....           ...+..+.+|...|++++|+|+         +. +|++++.||.|+||++...
T Consensus       344 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---------~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---------EPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSS---------STTEEEEEETTSEEEEEEECHH
T ss_pred             CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCC---------CCCEEEEEECCCCEEEeEcccc
Confidence            9999999987321           2577788899999999999999         67 9999999999999999754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.1e-32  Score=247.45  Aligned_cols=264  Identities=13%  Similarity=0.155  Sum_probs=208.0

Q ss_pred             EEecCCCceeEeeccCCCccEEEEEEeCC-----EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccc
Q 046226          115 RIWKQPEFTECGRLKAKTSMVVAMEVSHD-----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDK  189 (434)
Q Consensus       115 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (434)
                      ..|+....+.+..+.+|...|.+++|+|+     .|++++.||.|++||+..........                    
T Consensus        22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~--------------------   81 (368)
T 3mmy_A           22 TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA--------------------   81 (368)
T ss_dssp             -CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE--------------------
T ss_pred             ccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE--------------------
Confidence            34566677788889999999999999985     68899999999999998632221111                    


Q ss_pred             ccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEE--cCCC-eEEEEeCCCeEEEEeccc
Q 046226          190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVV--ADDG-VLYSASDDATVRVWRRYF  266 (434)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~-~l~s~~~dg~i~iwd~~~  266 (434)
                      +.+|...|.+++|+|++++|++++.||.|++||+++++.+. +..|...|.+++|  ++++ +|++++.||.|++||++.
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            12599999999999999999999999999999999988766 5569999999999  8888 899999999999999872


Q ss_pred             ccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC----EE
Q 046226          267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN----YV  342 (434)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l  342 (434)
                      .      .....+..+ ..+.++.+.  ...+++++.++.+.+||++..............+...+.++.+++.    .+
T Consensus       161 ~------~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (368)
T 3mmy_A          161 S------NPMMVLQLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF  231 (368)
T ss_dssp             S------SCSEEEECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred             C------cEEEEEecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence            2      122223333 355555555  4688899999999999998665544444444455555566665544    39


Q ss_pred             EEecCCCcEEEEeccCCCceeeEEEeecccc------------ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          343 ISGSADSTSRVWAREQDGRHTMLAVLVGHRG------------PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       343 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~------------~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                      ++++.||.|++||++.......+..+.+|..            .|++++|+|+         +.+|++++.||.|++||+
T Consensus       232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------~~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV---------HGTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT---------TCCEEEEETTSCEEEEET
T ss_pred             EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC---------CCEEEEEccCCeEEEEEC
Confidence            9999999999999998754456667777776            7999999998         899999999999999999


Q ss_pred             CCCCccc
Q 046226          411 TRPKSSC  417 (434)
Q Consensus       411 ~~~~~~~  417 (434)
                      .+++.+.
T Consensus       303 ~~~~~~~  309 (368)
T 3mmy_A          303 DARTKLK  309 (368)
T ss_dssp             TTTEEEE
T ss_pred             CCCcEEE
Confidence            9886543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=254.63  Aligned_cols=323  Identities=14%  Similarity=0.116  Sum_probs=221.1

Q ss_pred             CCCcccccCCCCCCCCCC-CCCccCCCCCCCcccceeeeE-----EE-------------eeccccEEEEEE---cCCEE
Q 046226           48 SSPISLHTSPLSSPRHPF-NPTAAAGSSSPETSSSYRCIS-----SV-------------LKKDGQILCIAV---GNGFI  105 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~-------------~~h~~~v~~~~~---~~~~l  105 (434)
                      ...+..|...+.+..+.+ ++..+++++.+..+..|+...     .+             .+|.+.|.+++|   ++++|
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            345567889999999988 999999999998888776632     12             249999999999   56799


Q ss_pred             EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-----EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCce
Q 046226          106 YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAV  180 (434)
Q Consensus       106 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      ++++.||.|++||+.+++....+. +...+.++.+.+.     .+++++.|+.|++||+..++....+.           
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----------  183 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-----------  183 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-----------
T ss_pred             EEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-----------
Confidence            999999999999999998888776 6778999999873     79999999999999998776555442           


Q ss_pred             eEEEeccccccCcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCe-eEEEc---------------ccCccCeEEEE
Q 046226          181 RNLIVGKDKMMKHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSK-CIETI---------------QAHSEPINALV  243 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~---------------~~~~~~v~~~~  243 (434)
                                 .|...|.+++|+|+++ +|++|+.||.|++||++++. .+..+               ..|...|.+++
T Consensus       184 -----------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          184 -----------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             -----------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             -----------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence                       5999999999999998 58899999999999998765 34443               56888999999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccccc
Q 046226          244 VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYG  322 (434)
Q Consensus       244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  322 (434)
                      |+|++ +|++++.||.|++||+............ ........+........+..+++++.++.|++||+.....    .
T Consensus       253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----~  327 (408)
T 4a11_B          253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK-VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ----I  327 (408)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC-CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE----E
T ss_pred             EcCCCCEEEEecCCCeEEEEECCCCccceecccc-ccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc----e
Confidence            99999 9999999999999998732211110000 0001111222222233456677778899999999875433    3


Q ss_pred             CcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226          323 GALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       323 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                      ..+.+|...|.+++|+  +++|++++.||.|++||+.+.   +.+.....+..   ...+.+..        ...+.+.+
T Consensus       328 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~  393 (408)
T 4a11_B          328 TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY---EPVPDDDETTT---KSQLNPAF--------EDAWSSSD  393 (408)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred             eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC---CccCCCCceEe---cccccccc--------ceeecccC
Confidence            4566899999999986  569999999999999999987   33333322221   12233321        44667788


Q ss_pred             cCCeEEEEecCC
Q 046226          401 LDGVLKMWRVTR  412 (434)
Q Consensus       401 ~Dg~v~iw~~~~  412 (434)
                      .|+.+++|+...
T Consensus       394 ~~~~~~~W~~~~  405 (408)
T 4a11_B          394 EEGGTSAWSHPQ  405 (408)
T ss_dssp             ------------
T ss_pred             ccCceeecCCcc
Confidence            899999998663

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.2e-33  Score=256.85  Aligned_cols=267  Identities=17%  Similarity=0.195  Sum_probs=210.2

Q ss_pred             CccCCCCCCCcccceee---------eEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc-------eeEeec
Q 046226           68 TAAAGSSSPETSSSYRC---------ISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF-------TECGRL  128 (434)
Q Consensus        68 ~~~~~~~~~~~~~~~~~---------~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~  128 (434)
                      ..+++++.++.+..|+.         +..+.+|.+.|++++|   ++++|++|+.||.|+|||+.++       +.+..+
T Consensus        48 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~  127 (402)
T 2aq5_A           48 ALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL  127 (402)
T ss_dssp             EEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE
T ss_pred             EEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe
Confidence            34445666777666653         3457789999999999   6789999999999999999887       567788


Q ss_pred             cCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC
Q 046226          129 KAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS  205 (434)
Q Consensus       129 ~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  205 (434)
                      .+|...|.+++|+|+   .+++++.||.|++||+.+++....+.                    ...|...|.+++|+|+
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~~~~v~~~~~~~~  187 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG--------------------PDVHPDTIYSVDWSRD  187 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC--------------------TTTCCSCEEEEEECTT
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe--------------------cCCCCCceEEEEECCC
Confidence            899999999999986   68999999999999998765443331                    0259999999999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCCeeEEEc-ccCccC-eEEEEEcCCC-eEEEE---eCCCeEEEEecccccCcceeEEEEEe
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKCIETI-QAHSEP-INALVVADDG-VLYSA---SDDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~-~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      +++|++++.||.|++||+++++.+..+ ..|.+. +.++.|+|++ +|++|   +.|+.|++||++.....    .....
T Consensus       188 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~----~~~~~  263 (402)
T 2aq5_A          188 GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP----LSLQE  263 (402)
T ss_dssp             SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC----SEEEE
T ss_pred             CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC----ceEEe
Confidence            999999999999999999999999988 678765 8999999999 77777   69999999999832211    11112


Q ss_pred             cccccCeEEEEEecCCCEEE-EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226          280 TAKYSPVKTLTLTLDDGLLY-GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      ..+...+.+++|+|++++|+ +|+.||.|++||+.............. |...|.+++|+++..+.++.++.+++|++.+
T Consensus       264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~  342 (402)
T 2aq5_A          264 LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVNKCEIARFYKLHE  342 (402)
T ss_dssp             CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred             ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecccccceecceeEEEEEcCC
Confidence            24567899999999999986 566799999999976543222222222 5578999999765333345677999999987


Q ss_pred             C
Q 046226          359 D  359 (434)
Q Consensus       359 ~  359 (434)
                      +
T Consensus       343 ~  343 (402)
T 2aq5_A          343 R  343 (402)
T ss_dssp             T
T ss_pred             C
Confidence            5

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.7e-33  Score=257.54  Aligned_cols=254  Identities=14%  Similarity=0.122  Sum_probs=193.9

Q ss_pred             eEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226          124 ECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       124 ~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (434)
                      .......|...|++|+|+|.   .|++|+.||.|+|||+..++......                    +.+|.+.|++|
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~--------------------~~gH~~~V~~l  170 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK--------------------GIGAGGSITGL  170 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC--------------------CCSSSCCCCEE
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE--------------------ccCCCCCEEEE
Confidence            33445678889999999983   79999999999999998765443331                    23699999999


Q ss_pred             EEec-CCCEEEEEecCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226          201 AINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQA--HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI  276 (434)
Q Consensus       201 ~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~  276 (434)
                      +|+| ++++|++|+.||+|++||++++........  +...+.+++|++++ +|++|+.||.|++||++.       ...
T Consensus       171 ~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-------~~~  243 (435)
T 4e54_B          171 KFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-------KEL  243 (435)
T ss_dssp             EECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-------CBC
T ss_pred             EEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-------cee
Confidence            9998 688999999999999999987654333332  34467899999999 999999999999999861       123


Q ss_pred             EEecccccCeEEEEEecCCC-EEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEE
Q 046226          277 LTLTAKYSPVKTLTLTLDDG-LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRV  353 (434)
Q Consensus       277 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~i  353 (434)
                      ..+..|...|.+++|+|++. +|++|+.|+.|++||++.......+ ....+|...|.+++|+  +++|++++.||.|+|
T Consensus       244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~i  322 (435)
T 4e54_B          244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRV  322 (435)
T ss_dssp             CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEE
T ss_pred             EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-EEeeeccccccceeECCCCCeeEEEcCCCEEEE
Confidence            45678999999999999876 7889999999999999765544332 2345789999999986  679999999999999


Q ss_pred             EeccCCCceeeEEEeecccc------ceeEEEEeecccCCCCCCcccEEEEe------------ecCCeEEEEecCCCCc
Q 046226          354 WAREQDGRHTMLAVLVGHRG------PIRCAIAFLGRFGEETEDEYCTICTG------------SLDGVLKMWRVTRPKS  415 (434)
Q Consensus       354 wd~~~~~~~~~~~~~~~h~~------~v~~~~~~~~~~~~~~~~~~~~l~s~------------~~Dg~v~iw~~~~~~~  415 (434)
                      ||+.++   .....+..|..      .+..+.|+|+         +.+++++            ..++.|++||..+++.
T Consensus       323 wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          323 YSASQW---DCPLGLIPHPHRHFQHLTPIKAAWHPR---------YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             EESSSS---SSEEEECCCCCCCCSSSCCCBCEECSS---------SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             EECCCC---ccceEEecccccccccceeEEEEEcCC---------CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence            999987   44444444432      1233455555         3344433            3456899999998875


Q ss_pred             cc
Q 046226          416 SC  417 (434)
Q Consensus       416 ~~  417 (434)
                      ..
T Consensus       391 ~~  392 (435)
T 4e54_B          391 MC  392 (435)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.8e-32  Score=245.61  Aligned_cols=306  Identities=14%  Similarity=0.157  Sum_probs=221.3

Q ss_pred             CCCCcccccCCCCCCCCCCCCCccCCCCCCCccccee---------eeEEEeeccccEEEEEE----cCCEEEEEeCCCe
Q 046226           47 FSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR---------CISSVLKKDGQILCIAV----GNGFIYTGSDSNV  113 (434)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~v~~~~~----~~~~l~tg~~dg~  113 (434)
                      ....+.+|...+.+..+.+++..+++++.+..++.|+         .+..+.+|.+.|++++|    ++++|++|+.||.
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            3455678999999999999999999999999888774         45667899999999999    2899999999999


Q ss_pred             EEEecCCCc---------eeEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCce
Q 046226          114 IRIWKQPEF---------TECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAV  180 (434)
Q Consensus       114 i~iwd~~~~---------~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      |++||+.++         +.+..+..|...|.+++|+|+    .+++++.||.|++||+...+.+..+......      
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------  156 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM------  156 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE------
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc------
Confidence            999999876         667888899999999999975    7999999999999999888766554432110      


Q ss_pred             eEEEeccccccCcCCCeEEEEEecC---CCEEEEEecCCcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-----eE
Q 046226          181 RNLIVGKDKMMKHMGPITSIAINVS---DDTLYSASLDKTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-----VL  250 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-----~l  250 (434)
                         .........|...+.+++|+|+   +.+|++++.|+.+.+|+...++.  +..+.+|...|.+++|+|++     +|
T Consensus       157 ---~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l  233 (351)
T 3f3f_A          157 ---KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI  233 (351)
T ss_dssp             ---ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred             ---cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence               0001111258889999999997   89999999999998888877764  77888899999999999995     79


Q ss_pred             EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc----CCCeEEEEEcCcccccccccCccc
Q 046226          251 YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC----TDGYIHYWHKGWFSAQLQYGGALQ  326 (434)
Q Consensus       251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~  326 (434)
                      ++++.||.|++||++....      .................+....+..+.    ....+.+|+.    ........+.
T Consensus       234 ~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  303 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLS------PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN----LQVELLSEHD  303 (351)
T ss_dssp             EEEETTSCEEEEEEEECC---------------------------------------------CCS----EEEEEEEEEC
T ss_pred             EEEcCCCeEEEEeCCCCcC------ccccCCcccceeccCCCcccccccccccccccceeeeeccc----ccccEEEEEe
Confidence            9999999999999882211      111111222233333333333333333    2334444442    2334445667


Q ss_pred             CcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226          327 GHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       327 ~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                      +|...|.+++|+  +++|++++.||.|++||+.++....++..+..|
T Consensus       304 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~  350 (351)
T 3f3f_A          304 DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ  350 (351)
T ss_dssp             TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred             cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence            899999999996  669999999999999999998777777776655

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-32  Score=255.60  Aligned_cols=254  Identities=17%  Similarity=0.239  Sum_probs=208.0

Q ss_pred             EEEeeccccEEEEEE--c-CCEEEEEeCCCeEEEecCCC----------ceeEeeccCCCccEEEEEEeCC---EEEEEE
Q 046226           86 SSVLKKDGQILCIAV--G-NGFIYTGSDSNVIRIWKQPE----------FTECGRLKAKTSMVVAMEVSHD---RVYAAY  149 (434)
Q Consensus        86 ~~~~~h~~~v~~~~~--~-~~~l~tg~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~l~~~~~---~l~~~s  149 (434)
                      .....|.+.|++++|  + +.+|++|+.||.|++||+.+          ...+..+.+|...|.+++|+|+   .|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            456779999999999  3 67999999999999999976          5777888899999999999986   799999


Q ss_pred             cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCC--
Q 046226          150 GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDS--  226 (434)
Q Consensus       150 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~--  226 (434)
                      .||.|++||+..........               .....+.+|...|.+++|+| ++.+|++++.||.|++||++++  
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~---------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~  266 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVI---------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT  266 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEE---------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred             CCCeEEEEeCCCCCCCCcee---------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence            99999999998643321110               00112236999999999999 6789999999999999999987  


Q ss_pred             -eeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC-EEEEEc
Q 046226          227 -KCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGGC  302 (434)
Q Consensus       227 -~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~  302 (434)
                       +.+..+..|...|++++|+|++  ++++|+.||.|++||++..     ......+..|...|.+++|+|++. +|++++
T Consensus       267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~-----~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL-----KLKLHSFESHKDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-----TSCSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC-----CCCeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence             5777888899999999999988  6889999999999999821     123445667889999999999885 699999


Q ss_pred             CCCeEEEEEcCccccc----------ccccCcccCcccceEEEEeeC--C-EEEEecCCCcEEEEeccCC
Q 046226          303 TDGYIHYWHKGWFSAQ----------LQYGGALQGHTHAVMCLASVA--N-YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~  359 (434)
                      .||.|++||+......          ........+|...|.+++|++  . +|++++.||.|+||++...
T Consensus       342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9999999999753211          233445668889999999974  4 8999999999999998753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=5.2e-32  Score=248.95  Aligned_cols=234  Identities=12%  Similarity=0.092  Sum_probs=171.4

Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec--------CCCEEEEEecC
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV--------SDDTLYSASLD  215 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~s~~~d  215 (434)
                      .+++++.|++|++||+..++......+.                 .+.+|.+.|++++|+|        ++++|++|+.|
T Consensus       103 ~las~~~d~~v~lw~~~~~~~~~~~~~~-----------------~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKNETIITQHVLG-----------------GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEEC-----------------TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             EEEEEeCCCcEEEEECCCCccceeeeec-----------------ccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            6889999999999998766443322211                 2347999999999998        78999999999


Q ss_pred             CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeE-------------------
Q 046226          216 KTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHT-------------------  274 (434)
Q Consensus       216 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------  274 (434)
                      ++|+|||+.++.++..+..|...|.+++|+|++  +|++++.|+.|++||++.........                   
T Consensus       166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            999999999988888888899999999999987  79999999999999987322111100                   


Q ss_pred             EEEEecccccCeEEEEEe-cCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce-------------------EE
Q 046226          275 LILTLTAKYSPVKTLTLT-LDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV-------------------MC  334 (434)
Q Consensus       275 ~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-------------------~~  334 (434)
                      ......+|...+.++.|+ ++++.|++++.|+.+++||+........    +..|...+                   .+
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE----ISDSTMKLGPKNLLPNVQGISLFPSLLGA  321 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSCCSSCC
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce----EeeecCccccEEEccccccccccCcceeE
Confidence            011234567788899987 7999999999999999999865432221    11222211                   11


Q ss_pred             EEe---eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          335 LAS---VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       335 ~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      +.+   ++.++++|+.||.|++||+.++   .+...+.+|..+|++++|+|+         |++||+++.|| +.+|++.
T Consensus       322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~---~~~~~~~~~~~~V~svafspd---------G~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          322 CPHPRYMDYFATAHSQHGLIQLINTYEK---DSNSIPIQLGMPIVDFCWHQD---------GSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EECSSCTTEEEEEETTTTEEEEEETTCT---TCCEEEEECSSCEEEEEECTT---------SSEEEEEESSE-EEEEEEG
T ss_pred             EEccCCCCEEEEEECCCCEEEEEECCCC---cEEEEecCCCCcEEEEEEcCC---------CCEEEEEeCCC-eEEEEEe
Confidence            111   1236788999999999999987   556667789999999999999         99999998766 6666654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.3e-32  Score=243.49  Aligned_cols=257  Identities=12%  Similarity=0.101  Sum_probs=203.3

Q ss_pred             eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe
Q 046226          126 GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN  203 (434)
Q Consensus       126 ~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  203 (434)
                      ....+|...|.+++|+|+  .|++++.||.|++||+...........                   ..+|...|.+++|+
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~   65 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ-------------------SLRYKHPLLCCNFI   65 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE-------------------EEECSSCEEEEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccccee-------------------eeecCCceEEEEEC
Confidence            345689999999999987  899999999999999976652211110                   11599999999999


Q ss_pred             cCCC-EEEEEecCCcEEEEEc-CCCeeEEEccc--CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce---eEE
Q 046226          204 VSDD-TLYSASLDKTIKVWRI-RDSKCIETIQA--HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL---HTL  275 (434)
Q Consensus       204 ~~~~-~l~s~~~dg~i~vwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~---~~~  275 (434)
                      |+++ +|++|+.||.|++||+ .+++. ..+..  |...|.+++|+| + .+++++.|+.|++||++.......   ...
T Consensus        66 ~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  143 (342)
T 1yfq_A           66 DNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN  143 (342)
T ss_dssp             ESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC
T ss_pred             CCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe
Confidence            9999 9999999999999999 77754 77888  999999999999 6 999999999999999883111100   111


Q ss_pred             EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc-ccccccccCcccCcccceEEEEee---CCEEEEecCCCcE
Q 046226          276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW-FSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTS  351 (434)
Q Consensus       276 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i  351 (434)
                      ...+. +...+.+++|++++  +++++.|+.|++||++. ......  .....|...+.+++++   ++++++++.||.|
T Consensus       144 ~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  218 (342)
T 1yfq_A          144 SNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT--IEESGLKYQIRDVALLPKEQEGYACSSIDGRV  218 (342)
T ss_dssp             SSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE--EEECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred             eeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce--eeecCCCCceeEEEECCCCCCEEEEEecCCcE
Confidence            22233 77889999999876  99999999999999975 332211  1234677789998886   4699999999999


Q ss_pred             EEEeccCCC---ceeeEEEeecccc---------ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          352 RVWAREQDG---RHTMLAVLVGHRG---------PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       352 ~iwd~~~~~---~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      ++|+++...   .......+..|..         .|.+++|+|+         +.+|++++.||.|++||+.+++...
T Consensus       219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------~~~l~~~~~dg~i~vwd~~~~~~~~  287 (342)
T 1yfq_A          219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR---------HKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT---------TCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC---------CCEEEEecCCceEEEEcCccHhHhh
Confidence            999998751   0145566677755         9999999998         8999999999999999999887543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.1e-31  Score=234.47  Aligned_cols=258  Identities=16%  Similarity=0.214  Sum_probs=209.2

Q ss_pred             ccCCCCCCCcccce-----eeeEEEe--eccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEE
Q 046226           69 AAAGSSSPETSSSY-----RCISSVL--KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAME  139 (434)
Q Consensus        69 ~~~~~~~~~~~~~~-----~~~~~~~--~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  139 (434)
                      .++. +.|.+++.|     +++..+.  +|...|++++|  ++++|++|+.||+|++||+++++.+..+.+|...+.++.
T Consensus        38 ~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~  116 (318)
T 4ggc_A           38 VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS  116 (318)
T ss_dssp             EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee
Confidence            3443 346666555     4566654  67889999999  899999999999999999999999999999999999999


Q ss_pred             EeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEE
Q 046226          140 VSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIK  219 (434)
Q Consensus       140 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  219 (434)
                      +.+..+++++.++.+++|+..........                     +.+|...+.++.+.+++++|++++.||.|+
T Consensus       117 ~~~~~l~s~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  175 (318)
T 4ggc_A          117 WNSYILSSGSRSGHIHHHDVRVAEHHVAT---------------------LSGHSQEVCGLRWAPDGRHLASGGNDNLVN  175 (318)
T ss_dssp             EETTEEEEEETTSEEEEEETTSSSCEEEE---------------------EECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cCCCEEEEEecCCceEeeecCCCceeEEE---------------------EcCccCceEEEEEcCCCCEEEEEecCccee
Confidence            99999999999999999998755432221                     126999999999999999999999999999


Q ss_pred             EEEcCCCee----EEEcccCccCeEEEEEcCCC--e--EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEE
Q 046226          220 VWRIRDSKC----IETIQAHSEPINALVVADDG--V--LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTL  291 (434)
Q Consensus       220 vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~--~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  291 (434)
                      +||+++++.    ......+.+.|.++.+.+++  .  +++++.++.|++||...      ... .....+...+..+.|
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~------~~~-~~~~~~~~~v~~~~~  248 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GAC-LSAVDAHSQVCSILW  248 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT------CCE-EEEEECSSCEEEEEE
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc------ccc-cccccceeeeeeeee
Confidence            999987653    34455678899999999877  2  34667889999999871      111 122345678999999


Q ss_pred             ecCCCEEEEEc--CCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          292 TLDDGLLYGGC--TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       292 ~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ++++..+++++  .|+.|++||++...    ....+.+|...|.+++|+  +++|++|+.||+|+|||+.+.
T Consensus       249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~----~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          249 SPHYKELISGHGFAQNQLVIWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cccccceEEEEEcCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            99999887654  79999999987543    334567999999999996  669999999999999999764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=254.35  Aligned_cols=289  Identities=11%  Similarity=0.046  Sum_probs=218.0

Q ss_pred             CCCCCCCCCCCCCccCCCCCCCcccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeecc-CCC
Q 046226           56 SPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLK-AKT  132 (434)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~~  132 (434)
                      ..+.+..++++++.+++++.|.+++..+....+.+|.+.|.+++|  +|       .++   .|++.+++....+. .|.
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-------~~~---~~~~~~~~~~~~~~~~~~   85 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-------FEN---KLDFELAQQNGLLNSQPV   85 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-------CCC---TTTTSCCCSSCSSTTSCS
T ss_pred             ccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC-------Ccc---eEEEEeCCCceEeecCCC
Confidence            557778889999999999999999866666667899999999999  44       344   45544444333333 458


Q ss_pred             ccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC-----CCeEEEEEecC
Q 046226          133 SMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM-----GPITSIAINVS  205 (434)
Q Consensus       133 ~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~  205 (434)
                      ..|.+++|+|+  .|++++.||.|++||...  ....+                       .|.     ..|.+++|+||
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l-----------------------~~~~~~~~~sv~svafSPD  140 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL-----------------------DSKGNLSSRTYHCFEWNPI  140 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC-----------------------CCSSCSTTTCEEEEEECSS
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec-----------------------cCCCccccccEEEEEEcCC
Confidence            89999999998  899999999999999543  11111                       133     35999999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCCe-------eEEEc----ccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeE
Q 046226          206 DDTLYSASLDKTIKVWRIRDSK-------CIETI----QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  274 (434)
                      |++|++|+.||+|++||+.+++       .+.++    .+|...|.+++|+|++ +++++.|+.|++||+..   .....
T Consensus       141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~---~~~~~  216 (588)
T 2j04_A          141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSA---SSHQP  216 (588)
T ss_dssp             SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCS---SSSCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCC---Ccccc
Confidence            9999999999999999999875       35666    5678899999999999 99999999999999872   12111


Q ss_pred             EEEEe-cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCC--EEEEecCCC
Q 046226          275 LILTL-TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VAN--YVISGSADS  349 (434)
Q Consensus       275 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~--~l~s~~~dg  349 (434)
                      ....+ .+|...|.+++|+  ++.|++++ ++.|++||+.......    ...+|...|..+++  +++  .+++++.||
T Consensus       217 ~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~----~~~gh~~~V~~va~~~s~d~~~La~a~edG  289 (588)
T 2j04_A          217 VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISS----LKTGSLENFHIIPLNHEKESTILLMSNKTS  289 (588)
T ss_dssp             CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEE----EECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred             ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEE----EEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence            22233 3677899999999  68899887 6999999986443311    11279999999998  644  899999999


Q ss_pred             cEEEEeccC-----CCc---------------eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226          350 TSRVWAREQ-----DGR---------------HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL  401 (434)
Q Consensus       350 ~i~iwd~~~-----~~~---------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  401 (434)
                      + ++|..+.     ...               ...+..+.+ ...|.+++++|+         |+.+|+++.
T Consensus       290 ~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPd---------G~~lA~~~~  350 (588)
T 2j04_A          290 Y-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPD---------GYSIAIVYD  350 (588)
T ss_dssp             E-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTT---------SSEEEEEEE
T ss_pred             C-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCC---------CCEEEEEEe
Confidence            9 9998631     100               011222222 556999999999         999998873

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.3e-29  Score=236.52  Aligned_cols=281  Identities=12%  Similarity=0.042  Sum_probs=218.4

Q ss_pred             eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEe-----eccCCCccEEEEEEeCC--EEEEEEcCCe
Q 046226           83 RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECG-----RLKAKTSMVVAMEVSHD--RVYAAYGDGK  153 (434)
Q Consensus        83 ~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~~s~dg~  153 (434)
                      +.+..+..+. .+.+++|  ++.++++++.|+.|++||+.+++...     .+.+|...|.+++|+++  .+++++.|+.
T Consensus       114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            4455555444 4568888  67788888889999999999988877     45678899999999876  6778888999


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEc
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETI  232 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~  232 (434)
                      |++||+.+++....+.                      .|...+.+++|+|++++++++ +.|+.|++||+++++.+..+
T Consensus       193 v~~~d~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~  250 (433)
T 3bws_A          193 VHVFDLKTLAYKATVD----------------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT  250 (433)
T ss_dssp             EEEEETTTCCEEEEEE----------------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             EEEEECCCceEEEEEc----------------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe
Confidence            9999998765554442                      488899999999999988654 47999999999999988888


Q ss_pred             ccCccCeEEEEEcCCC-eEEEEe--------CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE-EEEc
Q 046226          233 QAHSEPINALVVADDG-VLYSAS--------DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL-YGGC  302 (434)
Q Consensus       233 ~~~~~~v~~~~~~~~~-~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~  302 (434)
                      ..+ ..+.+++|+|++ .+++++        .|+.|++||+..  .    ..... ..+...+..++|+|+++.+ ++++
T Consensus       251 ~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~--~----~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~  322 (433)
T 3bws_A          251 DKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK--E----KLIDT-IGPPGNKRHIVSGNTENKIYVSDM  322 (433)
T ss_dssp             CCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT--T----EEEEE-EEEEECEEEEEECSSTTEEEEEET
T ss_pred             cCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC--C----cEEee-ccCCCCcceEEECCCCCEEEEEec
Confidence            754 458999999999 777777        588999999872  1    12222 2344578899999999755 6668


Q ss_pred             CCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecC---------------CCcEEEEeccCCCceeeE
Q 046226          303 TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSA---------------DSTSRVWAREQDGRHTML  365 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~  365 (434)
                      .|+.|++||+........    + .+...+.+++++  ++++++++.               ||.|++||+.++   +.+
T Consensus       323 ~~~~v~v~d~~~~~~~~~----~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~  394 (433)
T 3bws_A          323 CCSKIEVYDLKEKKVQKS----I-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVK  394 (433)
T ss_dssp             TTTEEEEEETTTTEEEEE----E-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEE
T ss_pred             CCCEEEEEECCCCcEEEE----e-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEE
Confidence            999999999875433322    2 244567788886  567777765               579999999887   666


Q ss_pred             EEeeccccceeEEEEeecccCCCCCCcccEEEEeec-CCeEEEEecCC
Q 046226          366 AVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL-DGVLKMWRVTR  412 (434)
Q Consensus       366 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-Dg~v~iw~~~~  412 (434)
                      ..+.. ...+.+++|+|+         +++|++++. |+.|++|+++.
T Consensus       395 ~~~~~-~~~~~~~~~s~d---------g~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          395 EFWEA-GNQPTGLDVSPD---------NRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEC-SSSEEEEEECTT---------SCEEEEEETTTTEEEEEEETT
T ss_pred             EEecC-CCCCceEEEcCC---------CCEEEEEECCCCeEEEEEecC
Confidence            66665 457899999999         888887775 99999999863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1e-29  Score=233.91  Aligned_cols=264  Identities=13%  Similarity=0.062  Sum_probs=207.8

Q ss_pred             CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EE-EEEEcCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RV-YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      .++++++.|+.|++||+.+++.+..+..|.. +.+++|+|+  .+ ++++.|+.|++||+.+++....+.          
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~----------   71 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP----------   71 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE----------
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE----------
Confidence            4688899999999999999999998887754 899999997  45 556689999999998765544442          


Q ss_pred             eeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eE-EEEeCC
Q 046226          180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VL-YSASDD  256 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~d  256 (434)
                                   +...+.+++|+|++++|+++ ..++.|++||+.+++.+..+..+ ..+.+++|+|++ .+ ++++.|
T Consensus        72 -------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~  137 (391)
T 1l0q_A           72 -------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGD  137 (391)
T ss_dssp             -------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTT
T ss_pred             -------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCC
Confidence                         34489999999999988654 46799999999999988887754 568999999999 55 788889


Q ss_pred             CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE-EEEcCCCeEEEEEcCcccccccccCcccCcccceEEE
Q 046226          257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL-YGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL  335 (434)
Q Consensus       257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  335 (434)
                      +.|++||+.      .......+..+ ..+..++|+|++++| ++++.++.|++||++.......    + .+...+.++
T Consensus       138 ~~v~~~d~~------~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~----~-~~~~~~~~~  205 (391)
T 1l0q_A          138 KTVSVINTV------TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT----V-KVEAAPSGI  205 (391)
T ss_dssp             TEEEEEETT------TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE----E-ECSSEEEEE
T ss_pred             CEEEEEECC------CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE----E-ecCCCccce
Confidence            999999987      12233333333 467999999999887 5778899999999875543322    2 234467777


Q ss_pred             Eee--CCEEEEec---CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE-EEeecCCeEEEEe
Q 046226          336 ASV--ANYVISGS---ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI-CTGSLDGVLKMWR  409 (434)
Q Consensus       336 ~~~--~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg~v~iw~  409 (434)
                      +++  +++|++++   .++.|++||+.++   +.+..+..|. .+.+++|+|+         +++| ++++.|+.|++||
T Consensus       206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-~~~~~~~s~d---------g~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITARIPVGP-DPAGIAVTPD---------GKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEEEECCS-SEEEEEECTT---------SSEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEecCcCCCcEEEEECCCC---eEEEEEecCC-CccEEEEccC---------CCEEEEEcCCCCEEEEEE
Confidence            775  66788777   6899999999987   6677777765 4788999998         7666 7778999999999


Q ss_pred             cCCCCcc
Q 046226          410 VTRPKSS  416 (434)
Q Consensus       410 ~~~~~~~  416 (434)
                      +.+++..
T Consensus       273 ~~~~~~~  279 (391)
T 1l0q_A          273 TATNTIT  279 (391)
T ss_dssp             TTTTEEE
T ss_pred             CCCCcEE
Confidence            9987643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-29  Score=236.57  Aligned_cols=244  Identities=10%  Similarity=0.065  Sum_probs=192.5

Q ss_pred             eeccccEEEEEE--cCCEE-EEEeCCCeEEEecCC--CceeEeecc--CCCccEEEEEEeCC--EEEEEEcCCeEEEeec
Q 046226           89 LKKDGQILCIAV--GNGFI-YTGSDSNVIRIWKQP--EFTECGRLK--AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRS  159 (434)
Q Consensus        89 ~~h~~~v~~~~~--~~~~l-~tg~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~  159 (434)
                      .+|.+.|++++|  ++++| ++|+.||.|+|||+.  +++.+..+.  .|...|.+++|+|+  .|++++.||.|++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            356778999999  78886 899999999999998  888877776  56789999999997  8999999999999998


Q ss_pred             CCCCCce-eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---CCEEEEEecCCcEEEEEcCCCeeEEE-ccc
Q 046226          160 TWDNGVK-HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---DDTLYSASLDKTIKVWRIRDSKCIET-IQA  234 (434)
Q Consensus       160 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~  234 (434)
                      ....... ...                   .+.+|...|.+++|+|+   +++|++|+.|+.|++||+.+++.+.. +.+
T Consensus       179 ~~~~~~~~~~~-------------------~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          179 NSIPEEKFTQE-------------------PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             TSCCCSSCCCC-------------------CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             CCcccccccce-------------------eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence            7665432 100                   11259999999999999   99999999999999999999988877 668


Q ss_pred             CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec-------------------------ccccCeEE
Q 046226          235 HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT-------------------------AKYSPVKT  288 (434)
Q Consensus       235 ~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------------------~~~~~v~~  288 (434)
                      |...|.+++|+ ++ +|++++.|+.|++||+...      .....+.                         .....+..
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC------CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC------cEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            99999999999 88 9999999999999998721      1122221                         23357899


Q ss_pred             EEEecCCCEEEEEc-CCCeEEEEEc-CcccccccccCcccCcccceEEEEeeCC-EEEEe-cC------CCcEEEEeccC
Q 046226          289 LTLTLDDGLLYGGC-TDGYIHYWHK-GWFSAQLQYGGALQGHTHAVMCLASVAN-YVISG-SA------DSTSRVWAREQ  358 (434)
Q Consensus       289 ~~~~~~~~~l~~~~-~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~-~~------dg~i~iwd~~~  358 (434)
                      ++|+|++++|++++ .|+.|++||+ +...........+..| ..|.+++|+++ ++++. +.      +..|.+|.+..
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            99999999999998 8999999998 2222223334455566 78999999866 44443 32      45689998765


Q ss_pred             C
Q 046226          359 D  359 (434)
Q Consensus       359 ~  359 (434)
                      .
T Consensus       392 ~  392 (450)
T 2vdu_B          392 N  392 (450)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.1e-29  Score=228.34  Aligned_cols=249  Identities=12%  Similarity=0.112  Sum_probs=176.4

Q ss_pred             EecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226          116 IWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH  193 (434)
Q Consensus       116 iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
                      ||++.+.+.+.....|...|.+++|+|+  .|++|+.+ .+++||+.........                        +
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~------------------------~   57 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQ------------------------E   57 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEE------------------------E
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeee------------------------e
Confidence            5677777777778899999999999998  56665555 5899997644322211                        2


Q ss_pred             CCCeEEEEEecCCCEE-EEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcce
Q 046226          194 MGPITSIAINVSDDTL-YSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      ...+..+++.++++.+ ++++.|+.|++||+.+++++..+. +...|.++.++++..+++  .|+.|++||+.... ...
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~-~~~  133 (355)
T 3vu4_A           58 MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPW-KRI  133 (355)
T ss_dssp             CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTC-CBS
T ss_pred             cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCc-eee
Confidence            2347788888888877 567788999999999999998887 667999999998764333  47899999987320 111


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEE--EcCCCeEEEEEcCccccc-----------ccc-cCcccCcccceEEEEee
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYG--GCTDGYIHYWHKGWFSAQ-----------LQY-GGALQGHTHAVMCLASV  338 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~-----------~~~-~~~~~~~~~~v~~~~~~  338 (434)
                      ..    +..   +...+++++  .++++  |+.||.|++||++.....           ... ...+.+|...|.+++|+
T Consensus       134 ~~----~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s  204 (355)
T 3vu4_A          134 TD----DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN  204 (355)
T ss_dssp             SC----CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC
T ss_pred             EE----ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC
Confidence            11    111   333455666  56665  688999999999754310           011 34567999999999996


Q ss_pred             --CCEEEEecCCCc-EEEEeccCCCceeeEEEee-c-cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          339 --ANYVISGSADST-SRVWAREQDGRHTMLAVLV-G-HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       339 --~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                        +++|++|+.|++ |++||++++   +++..+. + |...|.+++|+|+         +.+|++++.||+|++||+..+
T Consensus       205 ~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~g~h~~~v~~~~~s~~---------~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          205 RKSDMVATCSQDGTIIRVFKTEDG---VLVREFRRGLDRADVVDMKWSTD---------GSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             TTSSEEEEEETTCSEEEEEETTTC---CEEEEEECTTCCSCEEEEEECTT---------SCEEEEEETTCEEEEEESSCC
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCCCCCcEEEEEECCC---------CCEEEEEECCCEEEEEEccCC
Confidence              679999999998 999999987   7778887 5 9999999999999         899999999999999999876


Q ss_pred             C
Q 046226          414 K  414 (434)
Q Consensus       414 ~  414 (434)
                      .
T Consensus       273 ~  273 (355)
T 3vu4_A          273 Q  273 (355)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=8.7e-28  Score=220.98  Aligned_cols=294  Identities=15%  Similarity=0.094  Sum_probs=216.9

Q ss_pred             ceeeeEEEeeccccEEEEEE--cCCEE-EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeE
Q 046226           81 SYRCISSVLKKDGQILCIAV--GNGFI-YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKI  154 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~--~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i  154 (434)
                      ..+++..+..|. .+.+++|  ++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+  .+++++ .++.|
T Consensus        21 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v   98 (391)
T 1l0q_A           21 SNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTL   98 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEE
Confidence            345666676665 4899999  77766 677799999999999999988887665 8999999997  565544 57999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEE-EEEecCCcEEEEEcCCCeeEEEcc
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTL-YSASLDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~  233 (434)
                      ++||+.+++....+                       .+...+.+++|+|++++| ++++.|+.|++||+.+++.+..+.
T Consensus        99 ~v~d~~~~~~~~~~-----------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  155 (391)
T 1l0q_A           99 SVIDTTSNTVAGTV-----------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (391)
T ss_dssp             EEEETTTTEEEEEE-----------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCeEEEEE-----------------------eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence            99999876554443                       245578999999999987 678889999999999999888887


Q ss_pred             cCccCeEEEEEcCCC-eE-EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc---CCCeEE
Q 046226          234 AHSEPINALVVADDG-VL-YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC---TDGYIH  308 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~  308 (434)
                      .+ ..+.+++|+|++ .+ ++++.++.|++||++.      ......+. +...+.+++|+|++++|++++   .++.|+
T Consensus       156 ~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~  227 (391)
T 1l0q_A          156 VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT------NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVS  227 (391)
T ss_dssp             CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT------TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred             cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC------CeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence            65 456999999999 55 6778899999999872      12222222 445789999999999999888   689999


Q ss_pred             EEEcCcccccccccCcccCcccceEEEEee--CCEE-EEecCCCcEEEEeccCCCceeeEEEeecccccee---EEEEee
Q 046226          309 YWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYV-ISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIR---CAIAFL  382 (434)
Q Consensus       309 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~---~~~~~~  382 (434)
                      +||+.......    .+..|. .+.+++++  +++| ++++.|+.|++||+.++   +.+..+..|..+..   .+.+.|
T Consensus       228 ~~d~~~~~~~~----~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~  299 (391)
T 1l0q_A          228 MIDTGTNKITA----RIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN---TITATMAVGKNPYASGQFIGSIP  299 (391)
T ss_dssp             EEETTTTEEEE----EEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECSSSEECCSSCEEECS
T ss_pred             EEECCCCeEEE----EEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC---cEEEEEECCcCCCccceeeeccc
Confidence            99987543322    233343 46777776  6666 67789999999999987   67777776665432   133332


Q ss_pred             cccC-----------CCCCCcc--cEEEEeecCCeEEEEecCCCCc
Q 046226          383 GRFG-----------EETEDEY--CTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       383 ~~~~-----------~~~~~~~--~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      +...           ..+.+..  ..+...+.|..+++|++.++..
T Consensus       300 ~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~  345 (391)
T 1l0q_A          300 VQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS  345 (391)
T ss_dssp             SCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred             ccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence            1100           0000001  4577788899999999987764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-29  Score=226.93  Aligned_cols=227  Identities=8%  Similarity=-0.024  Sum_probs=173.0

Q ss_pred             CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 046226          143 DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR  222 (434)
Q Consensus       143 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  222 (434)
                      ..+++|+.||.|++||+.+++.+..+.                        ...|.++.|+|+   +++++.|++|++|+
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~------------------------~~~v~~~~~~~~---~~s~s~D~~i~~w~  101 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDSKTITTIT------------------------TPNPRTGGEHPA---IISRGPCNRLLLLY  101 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEEEEE------------------------EECCCTTCCCCS---EEEECSTTEEEEEE
T ss_pred             CEEEEECCCCcEEEEECCCCcEEEEEe------------------------cCCceeeeeCCc---eEEecCCCeEEEEE
Confidence            379999999999999998877665552                        344667778777   99999999999997


Q ss_pred             cC---------CCeeEEEcc-cCccCeEEEEEcC--CC-eEEEEeCCCeEEEEecccccCcceeEEEEEe-cccccCeEE
Q 046226          223 IR---------DSKCIETIQ-AHSEPINALVVAD--DG-VLYSASDDATVRVWRRYFYSENQLHTLILTL-TAKYSPVKT  288 (434)
Q Consensus       223 ~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~  288 (434)
                      ..         +++.+..+. .|...|.+++++|  ++ ++++++.||.|++||++.      ....... ..+...+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~------~~~~~~~~~~~~~~i~~  175 (343)
T 3lrv_A          102 PGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED------DSQYIVHSAKSDVEYSS  175 (343)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS------SCEEEEECCCSSCCCCE
T ss_pred             ccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC------CcEEEEEecCCCCceEE
Confidence            65         445444444 5678899999999  88 999999999999999871      1122222 345567999


Q ss_pred             EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC-cccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeE
Q 046226          289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG-HTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTML  365 (434)
Q Consensus       289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~  365 (434)
                      ++|+|++.+|++|+.||.|++||++......   ..+.. |...|.+++|+  +.+|++++ |+.|++||+++......+
T Consensus       176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~---~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~  251 (343)
T 3lrv_A          176 GVLHKDSLLLALYSPDGILDVYNLSSPDQAS---SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY  251 (343)
T ss_dssp             EEECTTSCEEEEECTTSCEEEEESSCTTSCC---EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS
T ss_pred             EEECCCCCEEEEEcCCCEEEEEECCCCCCCc---cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee
Confidence            9999999999999999999999997654331   23445 89999999996  56999999 559999999987443333


Q ss_pred             EEeecccccee--EEEEeecccCCCCCCcccEEEEeec-CCeEEEEecCCCCc
Q 046226          366 AVLVGHRGPIR--CAIAFLGRFGEETEDEYCTICTGSL-DGVLKMWRVTRPKS  415 (434)
Q Consensus       366 ~~~~~h~~~v~--~~~~~~~~~~~~~~~~~~~l~s~~~-Dg~v~iw~~~~~~~  415 (434)
                      ..+..|...+.  +++|+|+         +++|++++. |+.|++|++.....
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~---------g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          252 PTYTIPEFKTGTVTYDIDDS---------GKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             CCCBC-----CCEEEEECTT---------SSEEEEEETTTTEEEEEEECTTTC
T ss_pred             cccccccccccceEEEECCC---------CCEEEEecCCCCcEEEEEEccccc
Confidence            33334555554  5999998         999999998 99999999976654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=7.9e-29  Score=227.73  Aligned_cols=234  Identities=11%  Similarity=0.061  Sum_probs=162.9

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeE-----eeccCCCccEEEEEEeC--------C--EEEEEEcCCe
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTEC-----GRLKAKTSMVVAMEVSH--------D--RVYAAYGDGK  153 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~l~~~~--------~--~l~~~s~dg~  153 (434)
                      |.+.+....+  ++.+|++|+.|++|+|||..+++..     ..+.+|.+.|++++|+|        +  .|++++.|++
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t  167 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT  167 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence            3333433344  6778999999999999999887543     45789999999999986        3  7999999999


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEc
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETI  232 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~  232 (434)
                      |+|||+..+.......                      +|..+|.+++|+|++. +|++|+.||+|++||+++++.....
T Consensus       168 v~~Wd~~~~~~~~~~~----------------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~  225 (393)
T 4gq1_A          168 LIIWRLTDEGPILAGY----------------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN  225 (393)
T ss_dssp             EEEEEEETTEEEEEEE----------------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred             EEEEECCCCceeeeec----------------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence            9999997654433332                      5889999999999874 7999999999999999887543322


Q ss_pred             -------------------------ccCccCeEEEEEc-CCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccC
Q 046226          233 -------------------------QAHSEPINALVVA-DDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSP  285 (434)
Q Consensus       233 -------------------------~~~~~~v~~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  285 (434)
                                               .+|...+.++.|. +++ .+++++.|+.+++||+.....      ...+..+...
T Consensus       226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~------~~~l~~~~~~  299 (393)
T 4gq1_A          226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND------YNEISDSTMK  299 (393)
T ss_dssp             -----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------
T ss_pred             cccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC------CceEeeecCc
Confidence                                     3567788899987 677 999999999999999873221      1111111111


Q ss_pred             ------------------eEEEEEec--CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEE
Q 046226          286 ------------------VKTLTLTL--DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVI  343 (434)
Q Consensus       286 ------------------v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  343 (434)
                                        .....+++  ++.++++|+.||.|++||+.......    ...+|..+|.+++|+  |++||
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~----~~~~~~~~V~svafspdG~~LA  375 (393)
T 4gq1_A          300 LGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS----IPIQLGMPIVDFCWHQDGSHLA  375 (393)
T ss_dssp             ----CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE----EEEECSSCEEEEEECTTSSEEE
T ss_pred             cccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE----EecCCCCcEEEEEEcCCCCEEE
Confidence                              12223333  34467788899999999987544332    344677899999986  77999


Q ss_pred             EecCCCcEEEEecc
Q 046226          344 SGSADSTSRVWARE  357 (434)
Q Consensus       344 s~~~dg~i~iwd~~  357 (434)
                      +++.|| +.+|.+.
T Consensus       376 ~as~~G-v~lvrL~  388 (393)
T 4gq1_A          376 IATEGS-VLLTRLM  388 (393)
T ss_dssp             EEESSE-EEEEEEG
T ss_pred             EEeCCC-eEEEEEe
Confidence            998766 6666554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=3.1e-27  Score=204.87  Aligned_cols=177  Identities=11%  Similarity=0.062  Sum_probs=137.3

Q ss_pred             CCCeEEEecC-CCceeEeeccCCCccEEEEEEeC-----CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEE
Q 046226          110 DSNVIRIWKQ-PEFTECGRLKAKTSMVVAMEVSH-----DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNL  183 (434)
Q Consensus       110 ~dg~i~iwd~-~~~~~~~~~~~~~~~v~~l~~~~-----~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (434)
                      .|+.|++|++ ++++.+..+..|...+..++|++     +.|++++.|++|+|||+.+++.+..+....           
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-----------  223 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD-----------  223 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----------
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC-----------
Confidence            4899999999 55888888888888888888887     389999999999999999888777663100           


Q ss_pred             EeccccccCcCCCeEEEEEecCCCEE------------EEEecCCcEEEEEcCCCeeEEEc-----ccCccCeEEEEEcC
Q 046226          184 IVGKDKMMKHMGPITSIAINVSDDTL------------YSASLDKTIKVWRIRDSKCIETI-----QAHSEPINALVVAD  246 (434)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~l------------~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~  246 (434)
                              .+...+.+++|+|++.++            ++|+.|++|++||..+++.+..+     .+|...+.+..++ 
T Consensus       224 --------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-  294 (356)
T 2w18_A          224 --------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-  294 (356)
T ss_dssp             -----------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-
T ss_pred             --------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC-
Confidence                    123478888999999876            56888999999999999987765     3566665555554 


Q ss_pred             CCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeE-EEEEecCCCEEEEEcCCCeEEEEEc
Q 046226          247 DGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVK-TLTLTLDDGLLYGGCTDGYIHYWHK  312 (434)
Q Consensus       247 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~  312 (434)
                      ...+++++.|++|+|||+.      ..+....+.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus       295 g~~lASgS~DgTIkIWDl~------tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          295 DHCAAAILTSGTIAIWDLL------LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTEEEEEETTSCEEEEETT------TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEcCCCcEEEEECC------CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            2289999999999999997      4455667777877655 6899999999999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3.1e-26  Score=213.58  Aligned_cols=266  Identities=12%  Similarity=0.034  Sum_probs=200.3

Q ss_pred             EeCCC--eEEEecCCCc--eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226          108 GSDSN--VIRIWKQPEF--TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR  181 (434)
Q Consensus       108 g~~dg--~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      ++.++  .|.+||..++  +.+..+..+. .+.+++|+|+  .+++++.|+.|++||+.+++.......           
T Consensus        95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-----------  162 (433)
T 3bws_A           95 KPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP-----------  162 (433)
T ss_dssp             SGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC-----------
T ss_pred             ccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc-----------
Confidence            44455  4555555434  5566666554 4568999986  455556688999999987665432211           


Q ss_pred             EEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eE-EEEeCCCeE
Q 046226          182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VL-YSASDDATV  259 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~i  259 (434)
                            ..+.+|...|.+++|++++.++++++.|+.|++||+++++.+..+..|...+.+++|+|++ .+ ++++.|+.|
T Consensus       163 ------~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  236 (433)
T 3bws_A          163 ------EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDI  236 (433)
T ss_dssp             ------HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ------ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcE
Confidence                  0123688899999999999999999999999999999999999998899999999999998 55 566689999


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc--------CCCeEEEEEcCcccccccccCcccCcccc
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC--------TDGYIHYWHKGWFSAQLQYGGALQGHTHA  331 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  331 (434)
                      ++||++      .......+.. ...+.+++|+|+++++++++        .||.|++||++.......     ..|...
T Consensus       237 ~~~d~~------~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-----~~~~~~  304 (433)
T 3bws_A          237 SVIDRK------TKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-----IGPPGN  304 (433)
T ss_dssp             EEEETT------TTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-----EEEEEC
T ss_pred             EEEECC------CCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-----ccCCCC
Confidence            999987      1223333333 34589999999999999888        589999999875433222     144556


Q ss_pred             eEEEEee--CC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec-------
Q 046226          332 VMCLASV--AN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL-------  401 (434)
Q Consensus       332 v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-------  401 (434)
                      +.+++++  ++ ++++++.|+.|++||+.++   +.+..+. +...+.+++|+|+         +++|++++.       
T Consensus       305 ~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~~~~~~~s~d---------g~~l~~~~~~~~~~~~  371 (433)
T 3bws_A          305 KRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFDKPNTIALSPD---------GKYLYVSCRGPNHPTE  371 (433)
T ss_dssp             EEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSSEEEEEECTT---------SSEEEEEECCCCCTTT
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCCCCCeEEEcCC---------CCEEEEEecCCCcccc
Confidence            7778776  54 5577789999999999976   5555554 6778999999999         888887776       


Q ss_pred             --------CCeEEEEecCCCCcc
Q 046226          402 --------DGVLKMWRVTRPKSS  416 (434)
Q Consensus       402 --------Dg~v~iw~~~~~~~~  416 (434)
                              ||.|++||+.+++..
T Consensus       372 ~~~~~g~~dg~v~~~d~~~~~~~  394 (433)
T 3bws_A          372 GYLKKGLVLGKVYVIDTTTDTVK  394 (433)
T ss_dssp             CTTSCCSSCCEEEEEETTTTEEE
T ss_pred             ccccccccceEEEEEECCCCcEE
Confidence                    679999999887654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=6.6e-26  Score=215.78  Aligned_cols=278  Identities=8%  Similarity=0.013  Sum_probs=213.4

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeec--CCCCCceeeEeeeccCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRS--TWDNGVKHVKLATIPKT  176 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~--~~~~~~~~~~~~~~~~~  176 (434)
                      ++.++++++.|++|.+||..+++.+.++..+.. +..++|+|+  ++++++.|+.|.+||+  .+.+.+..+        
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i--------  218 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI--------  218 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--------
T ss_pred             CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE--------
Confidence            778899999999999999999999999884433 889999998  8999999999999999  554433333        


Q ss_pred             CCceeEEEeccccccCcCCCeEEEEEec----CCCEEEEEec-CCcEEEEEcCCCeeEEEcccC-----------ccCeE
Q 046226          177 GGAVRNLIVGKDKMMKHMGPITSIAINV----SDDTLYSASL-DKTIKVWRIRDSKCIETIQAH-----------SEPIN  240 (434)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~-----------~~~v~  240 (434)
                                     .+...+..++|+|    +++++++++. +++|.+||..+++++..+..+           ...+.
T Consensus       219 ---------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~  283 (543)
T 1nir_A          219 ---------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA  283 (543)
T ss_dssp             ---------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred             ---------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceE
Confidence                           2445679999999    9999999874 899999999999998887652           23788


Q ss_pred             EEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccc
Q 046226          241 ALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSA  317 (434)
Q Consensus       241 ~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~  317 (434)
                      .+.+++++  ++++...++.|.+||+.....  ..  ...+ .+...+..+.|+|++++|+++ ..+++|.+||+.+.+.
T Consensus       284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~--l~--~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l  358 (543)
T 1nir_A          284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDN--LT--VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL  358 (543)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEECTTSSS--CE--EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEEecCCCc--ce--eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE
Confidence            99999977  778888999999999873221  11  1122 244568889999999987655 4589999999876544


Q ss_pred             cccccCcccCcccceEEEE-ee-CCEEEEec-CCCcEEEEeccCCCc----eeeEEEeeccccceeEEEEeecccCCCCC
Q 046226          318 QLQYGGALQGHTHAVMCLA-SV-ANYVISGS-ADSTSRVWAREQDGR----HTMLAVLVGHRGPIRCAIAFLGRFGEETE  390 (434)
Q Consensus       318 ~~~~~~~~~~~~~~v~~~~-~~-~~~l~s~~-~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  390 (434)
                      ...+......|......+. .+ +..++++. .|++|.+||+.+.+.    +++++++.+|.+.+..++++|+       
T Consensus       359 ~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pd-------  431 (543)
T 1nir_A          359 SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK-------  431 (543)
T ss_dssp             EEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT-------
T ss_pred             EEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCC-------
Confidence            3322211123544444442 33 44667765 689999999987321    4889999999999999999999       


Q ss_pred             CcccEEEEee-------cCCeEEEEecCCCCcc
Q 046226          391 DEYCTICTGS-------LDGVLKMWRVTRPKSS  416 (434)
Q Consensus       391 ~~~~~l~s~~-------~Dg~v~iw~~~~~~~~  416 (434)
                        +++|++++       .+++|.+||+.+.+..
T Consensus       432 --g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          432 --SSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             --CCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             --CCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence              89999987       3789999999988765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=7.8e-26  Score=208.96  Aligned_cols=271  Identities=13%  Similarity=0.023  Sum_probs=200.7

Q ss_pred             cEEEEEE---cCCEEEEEe----CCC----eEEEecC--CCceeE--eeccCCCccEEEEEEe----------------C
Q 046226           94 QILCIAV---GNGFIYTGS----DSN----VIRIWKQ--PEFTEC--GRLKAKTSMVVAMEVS----------------H  142 (434)
Q Consensus        94 ~v~~~~~---~~~~l~tg~----~dg----~i~iwd~--~~~~~~--~~~~~~~~~v~~l~~~----------------~  142 (434)
                      .+...+|   ..+++++|+    .||    .|++||+  .+++.+  ..+.+|...+..+++.                .
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            3444555   345677776    467    9999999  888877  4578888877777665                3


Q ss_pred             CEEEEEEcC------CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC
Q 046226          143 DRVYAAYGD------GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK  216 (434)
Q Consensus       143 ~~l~~~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  216 (434)
                      ..++.++.+      +.|++||+.... ...+.                      +|...+.+++|+|++++|++++.++
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~----------------------~~~~~v~~~~~Spdg~~la~~s~~~  200 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH----------------------RSPQPLMSPAWSPDGSKLAYVTFES  200 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE----------------------EESSCEEEEEECTTSSEEEEEECTT
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCCC-CEEEe----------------------CCCCcceeeEEcCCCCEEEEEEecC
Confidence            466666654      799999987432 22221                      4888999999999999999999875


Q ss_pred             ---cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCCe--EEEEecccccCcceeEEEEEecccccCeEEE
Q 046226          217 ---TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDAT--VRVWRRYFYSENQLHTLILTLTAKYSPVKTL  289 (434)
Q Consensus       217 ---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  289 (434)
                         .|++||+.+++.. .+..|...+.+++|+|++ .|+ +++.++.  |++||+..      .. ...+..+...+.++
T Consensus       201 ~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~------~~-~~~l~~~~~~~~~~  272 (415)
T 2hqs_A          201 GRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS------GQ-IRQVTDGRSNNTEP  272 (415)
T ss_dssp             SSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT------CC-EEECCCCSSCEEEE
T ss_pred             CCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC------CC-EEeCcCCCCcccce
Confidence               9999999998875 466688899999999999 566 6666654  89999862      11 23456677889999


Q ss_pred             EEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCC---CcEEEEeccCCCc
Q 046226          290 TLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSAD---STSRVWAREQDGR  361 (434)
Q Consensus       290 ~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~iwd~~~~~~  361 (434)
                      +|+|+|++|++++. ++  .|.+||+......     .+..+...+.+++|+  |++|++++.+   ..|++||+.++. 
T Consensus       273 ~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-----~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~-  346 (415)
T 2hqs_A          273 TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-  346 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTSSCCE-----ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-
T ss_pred             EECCCCCEEEEEECCCCCcEEEEEECCCCCEE-----EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC-
Confidence            99999999988876 45  6777787644321     223445567777775  6788877754   589999999862 


Q ss_pred             eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC---eEEEEecCCCC
Q 046226          362 HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG---VLKMWRVTRPK  414 (434)
Q Consensus       362 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg---~v~iw~~~~~~  414 (434)
                        . ..+..|. .+.+++|+|+         |++|++++.|+   .|++||+..+.
T Consensus       347 --~-~~l~~~~-~~~~~~~spd---------g~~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          347 --V-QVLSSTF-LDETPSLAPN---------GTMVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             --E-EECCCSS-SCEEEEECTT---------SSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             --E-EEecCCC-CcCCeEEcCC---------CCEEEEEEcCCCccEEEEEECCCCc
Confidence              2 3455554 8899999999         89999988887   89999987443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=7.1e-25  Score=202.54  Aligned_cols=256  Identities=10%  Similarity=-0.062  Sum_probs=194.9

Q ss_pred             EEEeeccccEEEEEEc----------------CCEEEEEeCC------CeEEEecCCCceeEeeccCCCccEEEEEEeCC
Q 046226           86 SSVLKKDGQILCIAVG----------------NGFIYTGSDS------NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD  143 (434)
Q Consensus        86 ~~~~~h~~~v~~~~~~----------------~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  143 (434)
                      ..+.+|...+..+++.                +..++.++.+      +.|++||+.. .....+..|...|.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            4477888887777662                7777777664      7999999874 456677788999999999998


Q ss_pred             --EEEEEEcCC---eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE-EEecCCc
Q 046226          144 --RVYAAYGDG---KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY-SASLDKT  217 (434)
Q Consensus       144 --~l~~~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~  217 (434)
                        .|++++.++   .|++||+.+++.....                       .|...+.+++|+|+|++|+ +++.++.
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~~l~-----------------------~~~~~~~~~~~spdg~~la~~~~~~g~  246 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVRQVA-----------------------SFPRHNGAPAFSPDGSKLAFALSKTGS  246 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEEEE-----------------------CCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEEEee-----------------------cCCCcccCEEEcCCCCEEEEEEecCCC
Confidence              788888875   9999999876543211                       4777899999999999888 6666654


Q ss_pred             --EEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC-CC--eEEEEecccccCcceeEEEEEecccccCeEEEEE
Q 046226          218 --IKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD-DA--TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTL  291 (434)
Q Consensus       218 --i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  291 (434)
                        |++||+.+++. ..+..|...+.+++|+|++ .|++++. ++  .|.+||+..  ..     ...+..+...+..++|
T Consensus       247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~--~~-----~~~l~~~~~~~~~~~~  318 (415)
T 2hqs_A          247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GA-----PQRITWEGSQNQDADV  318 (415)
T ss_dssp             CEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SC-----CEECCCSSSEEEEEEE
T ss_pred             ceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC--CC-----EEEEecCCCcccCeEE
Confidence              99999988875 5677788899999999999 6777665 45  577777661  11     1223345567889999


Q ss_pred             ecCCCEEEEEcCC---CeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC---cEEEEeccCCCcee
Q 046226          292 TLDDGLLYGGCTD---GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS---TSRVWAREQDGRHT  363 (434)
Q Consensus       292 ~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---~i~iwd~~~~~~~~  363 (434)
                      +|+|++|++++.+   ..|++||+......     .+..+. .+.+++|+  |++|++++.++   .|++||+..    .
T Consensus       319 spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-----~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g----~  388 (415)
T 2hqs_A          319 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-----VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG----R  388 (415)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCEE-----ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS----C
T ss_pred             CCCCCEEEEEECcCCceEEEEEECCCCCEE-----EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC----C
Confidence            9999999988764   58999998754332     122333 67777775  67888888776   799999975    4


Q ss_pred             eEEEeeccccceeEEEEeec
Q 046226          364 MLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       364 ~~~~~~~h~~~v~~~~~~~~  383 (434)
                      ....+.+|.+.|.+++|+|.
T Consensus       389 ~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          389 FKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             CEEECCCSSSEEEEEEECCC
T ss_pred             cEEEeeCCCCCCcCCccccc
Confidence            56778899999999999997

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=3.9e-23  Score=196.67  Aligned_cols=323  Identities=9%  Similarity=-0.012  Sum_probs=224.7

Q ss_pred             CCCCCccCCCCCCCcc-----cceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecC--CCceeEeeccCCCcc
Q 046226           64 PFNPTAAAGSSSPETS-----SSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQ--PEFTECGRLKAKTSM  134 (434)
Q Consensus        64 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~--~~~~~~~~~~~~~~~  134 (434)
                      .++...+++...+.++     .+.+++.++..+.. +.+++|  +|++|++++.|+.|++||+  .+++.+.++.. ...
T Consensus       146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~  223 (543)
T 1nir_A          146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIE  223 (543)
T ss_dssp             CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSE
T ss_pred             CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCC
Confidence            3445555555555543     44566777774333 889989  8999999999999999999  88888888874 456


Q ss_pred             EEEEEEeC----C--EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC-CCeEEEEEecCC
Q 046226          135 VVAMEVSH----D--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM-GPITSIAINVSD  206 (434)
Q Consensus       135 v~~l~~~~----~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~  206 (434)
                      +..++|+|    +  ++++++ .+++|.+||..+.+.+..+..........            .-|. ..+..+.++|++
T Consensus       224 p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~------------~~~~~~~v~~i~~s~~~  291 (543)
T 1nir_A          224 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ------------TYHPEPRVAAIIASHEH  291 (543)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSC------------CEESCCCEEEEEECSSS
T ss_pred             cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcc------------ccccCCceEEEEECCCC
Confidence            79999999    7  777777 48999999998777666554211000000            0033 378999999977


Q ss_pred             CE-EEEEecCCcEEEEEcCCCeeEE--EcccCccCeEEEEEcCCC-eEE-EEeCCCeEEEEecccccCcceeEEEEEecc
Q 046226          207 DT-LYSASLDKTIKVWRIRDSKCIE--TIQAHSEPINALVVADDG-VLY-SASDDATVRVWRRYFYSENQLHTLILTLTA  281 (434)
Q Consensus       207 ~~-l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  281 (434)
                      .. +++...++.|.+||+.+.+.+.  .+. +...+.++.|+|++ +++ ++..++.|.+||+..      .+....+..
T Consensus       292 ~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t------g~l~~~i~~  364 (543)
T 1nir_A          292 PEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD------RRLSALVDV  364 (543)
T ss_dssp             SEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT------TEEEEEEEC
T ss_pred             CEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCC------CeEEEeecc
Confidence            65 4566778999999998866443  333 56678899999999 555 455689999999871      222333322


Q ss_pred             ----cccCeEEEEEecC-CCEEEEEc-CCCeEEEEEcCcccc---cccccCcccCcccceEEEEee--CCEEEEec----
Q 046226          282 ----KYSPVKTLTLTLD-DGLLYGGC-TDGYIHYWHKGWFSA---QLQYGGALQGHTHAVMCLASV--ANYVISGS----  346 (434)
Q Consensus       282 ----~~~~v~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----  346 (434)
                          |......+ ++|+ +..++++. .|++|.+||+.....   ..+....+.+|...+..+.++  +++|++++    
T Consensus       365 g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~  443 (543)
T 1nir_A          365 GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP  443 (543)
T ss_dssp             SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCS
T ss_pred             CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCC
Confidence                43333333 4776 55666665 589999999875221   244455666776666666664  67999887    


Q ss_pred             ---CCCcEEEEeccCCCce-eeEE-----EeeccccceeEEEEeecccCCCCCCcccEEEEe-----ecCCeEEEEecCC
Q 046226          347 ---ADSTSRVWAREQDGRH-TMLA-----VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG-----SLDGVLKMWRVTR  412 (434)
Q Consensus       347 ---~dg~i~iwd~~~~~~~-~~~~-----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-----~~Dg~v~iw~~~~  412 (434)
                         .+++|.+||+.+.... +.+.     .+..+...+..+.|+|+         |+.|+.+     +.|+.|.|||..+
T Consensus       444 ~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          444 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR---------GDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS---------SSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             CcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC---------CCEEEEEeecCCCCCCeEEEEECCC
Confidence               2779999999987532 1110     02456788999999999         7777755     2489999999999


Q ss_pred             CCccc
Q 046226          413 PKSSC  417 (434)
Q Consensus       413 ~~~~~  417 (434)
                      ++...
T Consensus       515 ~~~~~  519 (543)
T 1nir_A          515 LKLKA  519 (543)
T ss_dssp             TEEEE
T ss_pred             ceEEE
Confidence            87654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=1.2e-22  Score=182.15  Aligned_cols=276  Identities=10%  Similarity=0.044  Sum_probs=189.8

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCCC-ceeeEeeeccCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDNG-VKHVKLATIPKT  176 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~~-~~~~~~~~~~~~  176 (434)
                      .+..+++++.++.|++||..+++....+..+...+ .++|+|+  .+++++. ++.|.+||+.+++. .....       
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------   80 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-------   80 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-------
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-------
Confidence            34557888889999999999999888887776777 9999997  5666666 89999999987655 33321       


Q ss_pred             CCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC---cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-
Q 046226          177 GGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK---TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-  251 (434)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-  251 (434)
                                     .+..+..+++|+|++++++++..++   .|.+||+.+++.+..+..+ ....+++|+|++ +++ 
T Consensus        81 ---------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           81 ---------------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLIL  144 (331)
T ss_dssp             ---------------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEE
T ss_pred             ---------------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEE
Confidence                           2445555599999999999665553   8999999999988877643 456899999999 444 


Q ss_pred             EEeCCCe-EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEE-EcCCCeEEEEEcCcccccccccCcccCcc
Q 046226          252 SASDDAT-VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG-GCTDGYIHYWHKGWFSAQLQYGGALQGHT  329 (434)
Q Consensus       252 s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  329 (434)
                      +...++. |.+|++...  ................+..++|+|+|+++++ +..++.|.+||+....... ....+..+ 
T Consensus       145 ~~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~~-  220 (331)
T 3u4y_A          145 IDRSSANTVRRFKIDAD--GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAVGTN-  220 (331)
T ss_dssp             EEETTTTEEEEEEECTT--CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEEECS-
T ss_pred             EecCCCceEEEEEECCC--CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeeccCC-
Confidence            4456678 999998721  1111111122233456899999999996655 4568999999987544300 01122222 


Q ss_pred             cceEEEEe--eCCEEEE-ecCCCcEEEEeccCCCceeeEEEeecc----ccc---eeEEEEeecccCCCCCCcccEEEE-
Q 046226          330 HAVMCLAS--VANYVIS-GSADSTSRVWAREQDGRHTMLAVLVGH----RGP---IRCAIAFLGRFGEETEDEYCTICT-  398 (434)
Q Consensus       330 ~~v~~~~~--~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~h----~~~---v~~~~~~~~~~~~~~~~~~~~l~s-  398 (434)
                      ..+..+++  +|+++++ ...++.|.+||+.++.. ..+..+..+    ..+   ...++|+|+         +++|++ 
T Consensus       221 ~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spd---------g~~l~v~  290 (331)
T 3u4y_A          221 NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKT---------ETKLFIS  290 (331)
T ss_dssp             SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTT---------SSEEEEE
T ss_pred             CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCC---------CCEEEEe
Confidence            34455555  4775554 45678999999988622 224443332    222   245899998         777655 


Q ss_pred             eecCCeEEEEecCCCC
Q 046226          399 GSLDGVLKMWRVTRPK  414 (434)
Q Consensus       399 ~~~Dg~v~iw~~~~~~  414 (434)
                      +..++.|.+||+....
T Consensus       291 ~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          291 ANISRELKVFTISGKV  306 (331)
T ss_dssp             ETTTTEEEEEETTSCE
T ss_pred             cCCCCcEEEEEecCCc
Confidence            4556799999998654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=4.1e-23  Score=186.03  Aligned_cols=273  Identities=10%  Similarity=0.089  Sum_probs=183.7

Q ss_pred             EEEEEeCCCeEEEecCC-Cc--eeEeeccCCCccEEEEEEeCC--EEEEEEcC-CeEEEeecC--CCCCceeeEeeeccC
Q 046226          104 FIYTGSDSNVIRIWKQP-EF--TECGRLKAKTSMVVAMEVSHD--RVYAAYGD-GKIRVWRST--WDNGVKHVKLATIPK  175 (434)
Q Consensus       104 ~l~tg~~dg~i~iwd~~-~~--~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d-g~i~vwd~~--~~~~~~~~~~~~~~~  175 (434)
                      ++++++.|+.|++||+. ++  +.+..+ .+...+.+++|+|+  .+++++.+ +.|.+|++.  .+.. .....     
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~-----   79 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAE-----   79 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-EEEEE-----
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-eeccc-----
Confidence            44555789999999985 33  333333 46677899999997  68888876 999999987  2221 11110     


Q ss_pred             CCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcC---CCeeEEEcccCccCeEEEEEcCCC-eE
Q 046226          176 TGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIR---DSKCIETIQAHSEPINALVVADDG-VL  250 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~-~l  250 (434)
                             +        .....+..++|+|++++|++++. ++.|.+||+.   ..+.+..+.. ...+.+++|+|++ .+
T Consensus        80 -------~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l  143 (343)
T 1ri6_A           80 -------S--------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTL  143 (343)
T ss_dssp             -------E--------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEE
T ss_pred             -------c--------ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEE
Confidence                   0        12237889999999998877665 7889999994   4445555543 3458899999999 66


Q ss_pred             EEEe-CCCeEEEEecccccCcceeEEE--EEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccc---cC
Q 046226          251 YSAS-DDATVRVWRRYFYSENQLHTLI--LTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQY---GG  323 (434)
Q Consensus       251 ~s~~-~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~---~~  323 (434)
                      ++++ .++.|.+||+..  ........  .........+..++|+|++++++++ ..++.|.+||+.........   ..
T Consensus       144 ~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~  221 (343)
T 1ri6_A          144 WVPALKQDRICLFTVSD--DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD  221 (343)
T ss_dssp             EEEEGGGTEEEEEEECT--TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred             EEecCCCCEEEEEEecC--CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc
Confidence            6666 899999999872  11111111  1122233578899999999977655 47899999998642222111   11


Q ss_pred             ccc-Cc--ccceEEEEee--CCEEE-EecCCCcEEEEeccC-CCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE
Q 046226          324 ALQ-GH--THAVMCLASV--ANYVI-SGSADSTSRVWAREQ-DGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI  396 (434)
Q Consensus       324 ~~~-~~--~~~v~~~~~~--~~~l~-s~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  396 (434)
                      .+. ++  ...+.+++|+  +++|+ ++..++.|++||+.. ++....+..+..+.. +.+++|+|+         +++|
T Consensus       222 ~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~d---------g~~l  291 (343)
T 1ri6_A          222 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHS---------GKYL  291 (343)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTT---------SSEE
T ss_pred             ccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCC---------CCEE
Confidence            111 11  2345567775  55665 566899999999984 223355656665555 889999998         7877


Q ss_pred             EEee-cCCeEEEEecC
Q 046226          397 CTGS-LDGVLKMWRVT  411 (434)
Q Consensus       397 ~s~~-~Dg~v~iw~~~  411 (434)
                      ++++ .|+.|.+|+++
T Consensus       292 ~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          292 IAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEECTTTCEEEEEEEE
T ss_pred             EEecCCCCeEEEEEEc
Confidence            7776 68999999665

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=4.1e-23  Score=205.74  Aligned_cols=281  Identities=10%  Similarity=-0.014  Sum_probs=199.9

Q ss_pred             cccEEEEEE--cCCEEEEEeC-CC-----eEEEecCCCceeEeeccCCCc------------------------cEEEEE
Q 046226           92 DGQILCIAV--GNGFIYTGSD-SN-----VIRIWKQPEFTECGRLKAKTS------------------------MVVAME  139 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~-dg-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~l~  139 (434)
                      ...|.+++|  +|++|++++. |+     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456889999  8999999998 88     999999999887666654432                        378999


Q ss_pred             EeCC--EEEEEEcCCeEEEeecCCCC--CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC
Q 046226          140 VSHD--RVYAAYGDGKIRVWRSTWDN--GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD  215 (434)
Q Consensus       140 ~~~~--~l~~~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  215 (434)
                      |+||  .|++++. +.|++||+.++.  ....+                      ..|...+.+++|+|||++|+.++ +
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l----------------------~~~~~~~~~~~~SPDG~~la~~~-~  171 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL----------------------THGEGFATDAKLSPKGGFVSFIR-G  171 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC----------------------CCSSSCEEEEEECTTSSEEEEEE-T
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc----------------------ccCCcccccccCCCCCCEEEEEe-C
Confidence            9998  6776665 999999998662  22222                      14778899999999999999988 5


Q ss_pred             CcEEEEEcCCCeeEEEcccCccC----------------eEEEEEcCCC-eEEEEeCCC---------------------
Q 046226          216 KTIKVWRIRDSKCIETIQAHSEP----------------INALVVADDG-VLYSASDDA---------------------  257 (434)
Q Consensus       216 g~i~vwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~-~l~s~~~dg---------------------  257 (434)
                      +.|++||+.+++.......+...                +.++.|+||| .|++++.|+                     
T Consensus       172 ~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~  251 (741)
T 2ecf_A          172 RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ  251 (741)
T ss_dssp             TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred             CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence            68999999988876655444332                4789999999 788877665                     


Q ss_pred             ------------eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-----CCeEEEEEcCccccccc
Q 046226          258 ------------TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-----DGYIHYWHKGWFSAQLQ  320 (434)
Q Consensus       258 ------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~  320 (434)
                                  .|.+||+...  .... .......+...+..++| |||++|++++.     +..|++||+.+......
T Consensus       252 ~~~~~g~~~~~~~l~~~d~~~~--~~~~-~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~  327 (741)
T 2ecf_A          252 RYPAAGDANVQVKLGVISPAEQ--AQTQ-WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL  327 (741)
T ss_dssp             ECCBTTSCCCEEEEEEECSSTT--CCCE-EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE
T ss_pred             ecCCCCCCCCeeEEEEEECCCC--CceE-EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE
Confidence                        7888887620  1111 11111146678899999 99999987653     57899999875543322


Q ss_pred             ccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEE-EEeecccCCCCCCcccEE-
Q 046226          321 YGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCA-IAFLGRFGEETEDEYCTI-  396 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~l-  396 (434)
                      ...........+..++|  +|+++++++.||.++||.+...+  . ...+..|...|..+ .|+|+         ++.| 
T Consensus       328 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~d---------g~~l~  395 (741)
T 2ecf_A          328 AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEK---------AGLAY  395 (741)
T ss_dssp             EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETT---------TTEEE
T ss_pred             EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCC---------CCEEE
Confidence            11111011002234444  57788999999988898876432  3 56777888888887 59998         7655 


Q ss_pred             EEeecCC--eEEEEecCC
Q 046226          397 CTGSLDG--VLKMWRVTR  412 (434)
Q Consensus       397 ~s~~~Dg--~v~iw~~~~  412 (434)
                      ++++.|+  .++||++..
T Consensus       396 ~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          396 FRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EEECSSCTTCBEEEEEET
T ss_pred             EEEeCCCCceEEEEEEEc
Confidence            4556666  899999874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=5.4e-23  Score=184.77  Aligned_cols=269  Identities=10%  Similarity=0.022  Sum_probs=192.2

Q ss_pred             CEEEEEeCCCeEEEecCCCceeEeeccCCCc--cEEEEEEeCC--EEEE-EEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226          103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTS--MVVAMEVSHD--RVYA-AYGDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~--~l~~-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      ++|++++.++.|++||..+++.+..+.....  .+..++|+|+  .+++ +..++.|.+||+.+++....+.....    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----
Confidence            5789999999999999999998887764332  4788999997  4544 44578999999987765544432100    


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe------------cCCcEEEEEcCCCeeEEEcccCccCeEEEEEc
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS------------LDKTIKVWRIRDSKCIETIQAHSEPINALVVA  245 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  245 (434)
                                   ..|...+.+++|+|++++|+++.            .++.|.+||+.+++.+..+.. ...+.+++|+
T Consensus        78 -------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s  143 (337)
T 1pby_B           78 -------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA  143 (337)
T ss_dssp             -------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC
T ss_pred             -------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC
Confidence                         00223577899999999999886            579999999999988877764 4567889999


Q ss_pred             CCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-------------------
Q 046226          246 DDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-------------------  305 (434)
Q Consensus       246 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------------------  305 (434)
                      |++ +++++  ++.|.+||+..      ......+..+.. ...+.|+|++..++..+.++                   
T Consensus       144 ~dg~~l~~~--~~~i~~~d~~~------~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          144 RDGSKLYGL--GRDLHVMDPEA------GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             TTSSCEEEE--SSSEEEEETTT------TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             CCCCEEEEe--CCeEEEEECCC------CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence            999 67766  68899999871      122222322220 11237889888776554432                   


Q ss_pred             -----eEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEE
Q 046226          306 -----YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCA  378 (434)
Q Consensus       306 -----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~  378 (434)
                           .|.+||+...... .  ..+..+...+.+++++  +++++++  ++.|++||+.++   +.+..+.. ...+.++
T Consensus       215 ~~~~~~v~~~d~~~~~~~-~--~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~---~~~~~~~~-~~~~~~~  285 (337)
T 1pby_B          215 TAYRTGLLTMDLETGEMA-M--REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---ASIKRVPL-PHSYYSV  285 (337)
T ss_dssp             GGEEEEEEEEETTTCCEE-E--EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---EEEEEEEC-SSCCCEE
T ss_pred             cccccceEEEeCCCCCce-E--eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC---cCcceecC-CCceeeE
Confidence                 4688998754432 1  1223444556667775  6688777  799999999887   55555543 3457889


Q ss_pred             EEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          379 IAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       379 ~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      +|+|+         +++|++++.|+.|++||+.+++..
T Consensus       286 ~~s~d---------g~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          286 NVSTD---------GSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EECTT---------SCEEEEESBSSEEEEEETTTCCEE
T ss_pred             EECCC---------CCEEEEEcCCCcEEEEECcCCcEE
Confidence            99998         888888899999999999988754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=3.3e-23  Score=182.41  Aligned_cols=254  Identities=11%  Similarity=-0.019  Sum_probs=183.3

Q ss_pred             EEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCC-CCCceeeEeeeccCCCCceeEE
Q 046226          107 TGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTW-DNGVKHVKLATIPKTGGAVRNL  183 (434)
Q Consensus       107 tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~  183 (434)
                      .++.|+.|++||+.+++... +..|...|.+++|+|+  .+++++ ++.|++||+.. ++......              
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~--------------   80 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT--------------   80 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC--------------
T ss_pred             CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc--------------
Confidence            34678999999999887664 4557889999999998  566654 88999999987 54332221              


Q ss_pred             EeccccccCcCCCeEEEEEecCCCEEEEEe--cCCcEEEE--EcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCC
Q 046226          184 IVGKDKMMKHMGPITSIAINVSDDTLYSAS--LDKTIKVW--RIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDA  257 (434)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg  257 (434)
                             ..+...+.+++|+|++++|++++  .++.+.+|  ++.+++ ...+..+ ..+..++|+|++ .|+ ++..++
T Consensus        81 -------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~  151 (297)
T 2ojh_A           81 -------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQ  151 (297)
T ss_dssp             -------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETT
T ss_pred             -------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCC
Confidence                   01346788999999999999998  33445555  445544 3444433 348899999999 555 788899


Q ss_pred             eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCcccccccccCcccCcccceEEEE
Q 046226          258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA  336 (434)
Q Consensus       258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  336 (434)
                      .+++|+++....     ....+..+...+.+++|+|++++|+.++ .++.+.+|++.......   ..+..|...+.++.
T Consensus       152 ~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~  223 (297)
T 2ojh_A          152 VFDIYSMDIDSG-----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV---ERITDSAYGDWFPH  223 (297)
T ss_dssp             EEEEEEEETTTC-----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE---EECCCCSEEEEEEE
T ss_pred             ceEEEEEECCCC-----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc---EEEecCCcccCCeE
Confidence            999999762211     1234556677899999999999887766 58999999885322222   23445666777787


Q ss_pred             ee--CCEEEEecCC-----------CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC
Q 046226          337 SV--ANYVISGSAD-----------STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG  403 (434)
Q Consensus       337 ~~--~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg  403 (434)
                      |+  +++|++++.+           +.|++||+.++. ...+..+.+|...+.+++|+|+         +++|++++.|.
T Consensus       224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spd---------g~~l~~~~~~~  293 (297)
T 2ojh_A          224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN-VETLFDLFGGQGTMNSPNWSPD---------GDEFAYVRYFP  293 (297)
T ss_dssp             ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS-CEEEEEEEESTTTSCSCCBCTT---------SSEEEEEEECC
T ss_pred             ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC-ceeeeccCCCCcccccceECCC---------CCEEEEEEecc
Confidence            75  6688877765           569999998763 2445566688889999999999         88888887664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=2.3e-21  Score=175.06  Aligned_cols=277  Identities=15%  Similarity=0.112  Sum_probs=181.5

Q ss_pred             EEEEEe----CCCeEEEecC--CCceeEe-eccCCCccEEEEEEeCC-EEEEEEc---CCeEEEeecCCCCCceeeEeee
Q 046226          104 FIYTGS----DSNVIRIWKQ--PEFTECG-RLKAKTSMVVAMEVSHD-RVYAAYG---DGKIRVWRSTWDNGVKHVKLAT  172 (434)
Q Consensus       104 ~l~tg~----~dg~i~iwd~--~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~s~---dg~i~vwd~~~~~~~~~~~~~~  172 (434)
                      .+++|+    .++.|.+|++  .+++... ....+......++|+|+ .+++++.   ++.|.+||+..+.. ..+..  
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~-~~~~~--   80 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTA-HKLNT--   80 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEE-EEEEE--
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcE-EEeee--
Confidence            355553    3456777755  4555433 22334566788999998 5666655   68999999854432 11110  


Q ss_pred             ccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCC-C--eeEEEccc---------CccCe
Q 046226          173 IPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRD-S--KCIETIQA---------HSEPI  239 (434)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~--~~~~~~~~---------~~~~v  239 (434)
                                       ...+...+..++|+|++++|++++ .++.|.+||+.. +  +.+..+..         +...+
T Consensus        81 -----------------~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~  143 (347)
T 3hfq_A           81 -----------------VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHI  143 (347)
T ss_dssp             -----------------EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCE
T ss_pred             -----------------eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCc
Confidence                             013667788999999999998887 678999999962 2  33333322         12248


Q ss_pred             EEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEE-EcCCCeEEEEEcCcccc
Q 046226          240 NALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG-GCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       240 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~  317 (434)
                      .+++|+|++ ++++...++.|.+||+..  .................+..++|+|+|+++++ +..++.|.+|++.....
T Consensus       144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~--~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  221 (347)
T 3hfq_A          144 HYTDLTPDNRLAVIDLGSDKVYVYNVSD--AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG  221 (347)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECT--TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             eEEEECCCCcEEEEeCCCCEEEEEEECC--CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence            899999999 666777789999999871  11111111111222346788999999996665 56789999999864222


Q ss_pred             cccccCcccCc------ccceEEEEee--CCEE-EEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCC
Q 046226          318 QLQYGGALQGH------THAVMCLASV--ANYV-ISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       318 ~~~~~~~~~~~------~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  388 (434)
                      .......+...      ...+..++++  |++| ++...++.|.+|++...+....+..+..+...+..++|+|+     
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spd-----  296 (347)
T 3hfq_A          222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPT-----  296 (347)
T ss_dssp             EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTT-----
T ss_pred             ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCC-----
Confidence            21111111111      1346666665  6666 55667899999999754445667777777777899999999     


Q ss_pred             CCCcccEEEEeec-CCeEEEEecC
Q 046226          389 TEDEYCTICTGSL-DGVLKMWRVT  411 (434)
Q Consensus       389 ~~~~~~~l~s~~~-Dg~v~iw~~~  411 (434)
                          +++|++++. ++.|.+|+++
T Consensus       297 ----g~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          297 ----EAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             ----SSEEEEEETTTTEEEEEEEC
T ss_pred             ----CCEEEEEEcCCCcEEEEEEe
Confidence                888877775 4899999654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=6.6e-21  Score=172.36  Aligned_cols=280  Identities=8%  Similarity=-0.003  Sum_probs=195.5

Q ss_pred             ccccEEEEEE--cCCEEEEEeC-------CCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEee
Q 046226           91 KDGQILCIAV--GNGFIYTGSD-------SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWR  158 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd  158 (434)
                      ....+..+++  ++++|++++.       ++.|.+||..+++.+..+... ..+..++|+++  .++++. .++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            4556888998  7788888774       568999999999888877643 34778899996  455554 479999999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe--cCCcEEEEEcCCCeeEEEcccCc
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS--LDKTIKVWRIRDSKCIETIQAHS  236 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~  236 (434)
                      ..+++....+........             .......+.+++|+|+++++++++  .++.|.+||+.+++.+..+..+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  184 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRT-------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG  184 (353)
T ss_dssp             TTTCCEEEEEESCCCCCC-------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC
T ss_pred             CCCCeeEEEEecCCCccc-------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC
Confidence            987766555532110000             000112368899999999888776  47889999999999988887666


Q ss_pred             cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCc
Q 046226          237 EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGW  314 (434)
Q Consensus       237 ~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  314 (434)
                      ..+.+++|+|++ .+++++.++.|.+||+..  ............++...+..++|+|+++++++++. ++.|.+||+..
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNADGELITIDTAD--NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECTTSEEEEEETTT--TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             CccceEEECCCCCEEEEEcCCCeEEEEECCC--CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            678899999999 888888999999999871  11111111111124456788999999998777665 59999999875


Q ss_pred             ccccccccCcccCcccceEEEEeeCCEE-EEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcc
Q 046226          315 FSAQLQYGGALQGHTHAVMCLASVANYV-ISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       315 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  393 (434)
                      ........    .....-..+..+++++ ++...++.|.+||+.++   +.+..+... ..+.+++|+|+         +
T Consensus       263 ~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~~-~~~~~~~~s~d---------g  325 (353)
T 3vgz_A          263 GNILAKVA----APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY---KVVKTFDTP-THPNSLALSAD---------G  325 (353)
T ss_dssp             CCEEEEEE----CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEEECC-SEEEEEEECTT---------S
T ss_pred             CcEEEEEE----cCCCceEEECCCCCEEEEEECCCCeEEEEECCCC---eEEEEEecC-CCCCeEEEcCC---------C
Confidence            54332221    1122223444567754 45557999999999887   556555543 46789999999         7


Q ss_pred             cEEEEeecCC
Q 046226          394 CTICTGSLDG  403 (434)
Q Consensus       394 ~~l~s~~~Dg  403 (434)
                      ++|+.+..++
T Consensus       326 ~~l~v~~~~~  335 (353)
T 3vgz_A          326 KTLYVSVKQK  335 (353)
T ss_dssp             CEEEEEEECC
T ss_pred             CEEEEEEccc
Confidence            7676666554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=4.8e-22  Score=204.76  Aligned_cols=315  Identities=10%  Similarity=0.036  Sum_probs=228.2

Q ss_pred             CCcccccCCCCCCCCCCCCCccCCCCCC----C--ccccee----eeEEEeeccccE-------EEEEE--cCCEEEEEe
Q 046226           49 SPISLHTSPLSSPRHPFNPTAAAGSSSP----E--TSSSYR----CISSVLKKDGQI-------LCIAV--GNGFIYTGS  109 (434)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~----~~~~~~~h~~~v-------~~~~~--~~~~l~tg~  109 (434)
                      ..+..|...+..+.++++++.++..+.+    .  .+..+.    ....+..|.+.+       .+++|  +|+++++++
T Consensus        46 ~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~  125 (1045)
T 1k32_A           46 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  125 (1045)
T ss_dssp             EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEEC
Confidence            4566777888889999999988876533    1  222222    256678888888       99999  788888887


Q ss_pred             CC------CeEEEecCCCceeEe-------------------------------------------------eccCCCcc
Q 046226          110 DS------NVIRIWKQPEFTECG-------------------------------------------------RLKAKTSM  134 (434)
Q Consensus       110 ~d------g~i~iwd~~~~~~~~-------------------------------------------------~~~~~~~~  134 (434)
                      .+      ..|.+|++.+++...                                                 .+..|...
T Consensus       126 ~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~  205 (1045)
T 1k32_A          126 AMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTH  205 (1045)
T ss_dssp             TTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSC
T ss_pred             CcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCc
Confidence            54      357778775544221                                                 12345667


Q ss_pred             EEEEEEeCCEE-EEEEcCCeEEEeecCCCC-CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226          135 VVAMEVSHDRV-YAAYGDGKIRVWRSTWDN-GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA  212 (434)
Q Consensus       135 v~~l~~~~~~l-~~~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  212 (434)
                      +.++.|+++.+ +++..|+.+.+|++.... ....+                      ..|. .+...+|+|+|++|+.+
T Consensus       206 v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l----------------------~~~~-~~~~~~~SpDG~~la~~  262 (1045)
T 1k32_A          206 VSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKH----------------------TSFT-DYYPRHLNTDGRRILFS  262 (1045)
T ss_dssp             CEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEEC----------------------CCCC-SSCEEEEEESSSCEEEE
T ss_pred             ccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEe----------------------cCCC-CcceeeEcCCCCEEEEE
Confidence            77888888844 455567888888765321 11111                      1233 46677999999999888


Q ss_pred             ecCCcEEEEEcCCCeeEEEccc-----------CccCeEEEEEc-CCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226          213 SLDKTIKVWRIRDSKCIETIQA-----------HSEPINALVVA-DDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       213 ~~dg~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      . ++.|++||+...+ +..+..           |...+.+++|+ |++ .|++++ ++.|.+|++..   .   . ...+
T Consensus       263 ~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~---~---~-~~~~  332 (1045)
T 1k32_A          263 K-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG---T---Y-VLKV  332 (1045)
T ss_dssp             E-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS---S---B-EEEC
T ss_pred             e-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC---C---c-eEEc
Confidence            5 8999999995443 445554           33468999999 999 677766 78999998761   1   1 1224


Q ss_pred             ccccc-CeEEEEEecCCCEEEEEcCCCeEE-EEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEe
Q 046226          280 TAKYS-PVKTLTLTLDDGLLYGGCTDGYIH-YWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWA  355 (434)
Q Consensus       280 ~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd  355 (434)
                      ..+.. .+..++|+ +|+.|+.++.++.+. +||+......     .+.+|...+..++|+  |++|++++.++.|++||
T Consensus       333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-----~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d  406 (1045)
T 1k32_A          333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-----KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD  406 (1045)
T ss_dssp             SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-----ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-----EecCCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence            45555 78999999 999999988888888 8997643221     222666778888875  67999999999999999


Q ss_pred             ccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC----------eEEEEecCCCC
Q 046226          356 REQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG----------VLKMWRVTRPK  414 (434)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg----------~v~iw~~~~~~  414 (434)
                      +.++   +......+|.+.+.+++|+|+         |++|++++.++          .|++||+.+++
T Consensus       407 ~~tg---~~~~~~~~~~~~v~~~~~SpD---------G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          407 LETG---KPTVIERSREAMITDFTISDN---------SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             TTTC---CEEEEEECSSSCCCCEEECTT---------SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CCCC---ceEEeccCCCCCccceEECCC---------CCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            9987   455556689999999999999         89998887755          99999998765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=3.3e-22  Score=199.17  Aligned_cols=327  Identities=12%  Similarity=0.016  Sum_probs=213.9

Q ss_pred             CCCCCCCCCCCCCccCCCCC-CC-----cccc-----eeeeEEEeeccc------------------------cEEEEEE
Q 046226           56 SPLSSPRHPFNPTAAAGSSS-PE-----TSSS-----YRCISSVLKKDG------------------------QILCIAV  100 (434)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~-~~-----~~~~-----~~~~~~~~~h~~------------------------~v~~~~~  100 (434)
                      ..+..+.++++++.++..+. +.     .+..     .+....+..|..                        .|.+++|
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            34566778888988887776 54     3333     334444444432                        3788899


Q ss_pred             --cCCEEEEEeCCCeEEEecCCCce--eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeecc
Q 046226          101 --GNGFIYTGSDSNVIRIWKQPEFT--ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIP  174 (434)
Q Consensus       101 --~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~  174 (434)
                        +|++|++++. +.|++||+.++.  ....+..|...+..++|+||  .|+.++ ++.|++||+.+++......     
T Consensus       117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~-----  189 (741)
T 2ecf_A          117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA-----  189 (741)
T ss_dssp             CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC-----
T ss_pred             CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc-----
Confidence              8999999986 999999998873  45567778888999999998  566665 6799999987653322110     


Q ss_pred             CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC---------------------------------cEEEE
Q 046226          175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK---------------------------------TIKVW  221 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---------------------------------~i~vw  221 (434)
                      .....+..- ............+..++|+|||++|++++.|+                                 .|++|
T Consensus       190 ~~~~~~~~g-~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          190 DGSTTIGNG-IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCSSEEES-CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CCccceecc-ccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            000000000 00000000112357899999999999987765                                 78999


Q ss_pred             EcCC-CeeEEEcc--cCccCeEEEEEcCCC-eEEEEeC-----CCeEEEEecccccCcceeEEEEEeccccc----CeEE
Q 046226          222 RIRD-SKCIETIQ--AHSEPINALVVADDG-VLYSASD-----DATVRVWRRYFYSENQLHTLILTLTAKYS----PVKT  288 (434)
Q Consensus       222 d~~~-~~~~~~~~--~~~~~v~~~~~~~~~-~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~v~~  288 (434)
                      |+.+ ++......  .|...+..++| ||+ .|++++.     +..|++||+..  . ...   .....+..    .+..
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~--g-~~~---~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS--N-QQR---VLAHETSPTWVPLHNS  341 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT--C-CEE---EEEEEECSSCCCCCSC
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC--C-ceE---EEEEcCCCCcCCcCCc
Confidence            9988 87655443  37788999999 999 6665543     57899999872  1 111   11222221    4567


Q ss_pred             EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEE-Ee--eCCEE-EEecCCC--cEEEEeccCCCce
Q 046226          289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL-AS--VANYV-ISGSADS--TSRVWAREQDGRH  362 (434)
Q Consensus       289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~--~~~~l-~s~~~dg--~i~iwd~~~~~~~  362 (434)
                      ++|+|||++++++..||.++||.++....    ...+..|...+..+ .|  +++.| ++++.++  .++||++...+  
T Consensus       342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~----~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g--  415 (741)
T 2ecf_A          342 LRFLDDGSILWSSERTGFQHLYRIDSKGK----AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG--  415 (741)
T ss_dssp             CEECTTSCEEEEECTTSSCEEEEECSSSC----EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC--
T ss_pred             eEECCCCeEEEEecCCCccEEEEEcCCCC----eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC--
Confidence            89999999999999999888887653222    22344566666554 35  46655 4555565  89999987532  


Q ss_pred             eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC----CeEEEEecCCC
Q 046226          363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD----GVLKMWRVTRP  413 (434)
Q Consensus       363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D----g~v~iw~~~~~  413 (434)
                      .....+.. ...+..++|+|+         +++|+....+    +.+.+|+...+
T Consensus       416 ~~~~~l~~-~~~~~~~~~spd---------g~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          416 GQPQRLSK-APGMHSASFARN---------ASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             CCCEECCC-SCSEEEEEECTT---------SSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             CCeeeccc-CCCceEEEECCC---------CCEEEEEecCCCCCCeEEEEEcCCC
Confidence            33344444 566889999999         7777665443    46888987543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=6e-22  Score=196.22  Aligned_cols=275  Identities=7%  Similarity=-0.023  Sum_probs=183.1

Q ss_pred             EEEcCCEEEEEeCCCeEEEecCCCceeE-eeccCCC-----------------ccEEEEEEeCCEEEEEEcCCeEEEeec
Q 046226           98 IAVGNGFIYTGSDSNVIRIWKQPEFTEC-GRLKAKT-----------------SMVVAMEVSHDRVYAAYGDGKIRVWRS  159 (434)
Q Consensus        98 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~l~~~~~~l~~~s~dg~i~vwd~  159 (434)
                      +.|.++.+++++.|+ | +||+.+++.+ ..+..+.                 ..|.+++|+|+..+..+.++.|++||+
T Consensus        31 ~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~i~~~d~  108 (706)
T 2z3z_A           31 LQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGFDM  108 (706)
T ss_dssp             CEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTEEEEEET
T ss_pred             CcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCEEEEEEC
Confidence            444366677777787 8 9999998773 3333322                 469999999984444446799999999


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC-----CeeEEEccc
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD-----SKCIETIQA  234 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~  234 (434)
                      .+++.....                       .+...+.+++|+|||++|+.+ .++.|++||+.+     ++.......
T Consensus       109 ~~~~~~~l~-----------------------~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~  164 (706)
T 2z3z_A          109 LARKVTYLF-----------------------DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTID  164 (706)
T ss_dssp             TTTEEEEEE-----------------------CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSC
T ss_pred             CCCceEEcc-----------------------CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccC
Confidence            765322211                       356678889999999999986 589999999998     776655544


Q ss_pred             CccC--------------eEEEEEcCCC-eEEEEe---------------------------------CCCeEEEEeccc
Q 046226          235 HSEP--------------INALVVADDG-VLYSAS---------------------------------DDATVRVWRRYF  266 (434)
Q Consensus       235 ~~~~--------------v~~~~~~~~~-~l~s~~---------------------------------~dg~i~iwd~~~  266 (434)
                      +...              +.++.|+||| +|++++                                 .+..|++||+..
T Consensus       165 ~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~  244 (706)
T 2z3z_A          165 GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT  244 (706)
T ss_dssp             CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred             CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence            4433              4899999999 787776                                 446799999861


Q ss_pred             ccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-----eEEEEEcCcccccccccC-cccCcccceE--EEEe-
Q 046226          267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-----YIHYWHKGWFSAQLQYGG-ALQGHTHAVM--CLAS-  337 (434)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-~~~~~~~~v~--~~~~-  337 (434)
                      .    ..........+...+..++|+|||++|++++.++     .|++||+.+......... ........+.  .++. 
T Consensus       245 ~----~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~  320 (706)
T 2z3z_A          245 G----KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPG  320 (706)
T ss_dssp             T----EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             C----ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecC
Confidence            1    1111111124556789999999999999887765     899999876521111110 0001111123  3344 


Q ss_pred             -eCCEEEEecCCCcEEEEecc-CCCceeeEEEeeccccceeE-EEEeecccCCCCCCcccEEEE-eecCC----eEEEEe
Q 046226          338 -VANYVISGSADSTSRVWARE-QDGRHTMLAVLVGHRGPIRC-AIAFLGRFGEETEDEYCTICT-GSLDG----VLKMWR  409 (434)
Q Consensus       338 -~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s-~~~Dg----~v~iw~  409 (434)
                       +|+++++++.|+.++||++. ++   ..+..+..|...+.. ++|+|+         ++.|+. ++.++    .|..|+
T Consensus       321 ~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spd---------g~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          321 SNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPK---------GTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             CSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTT---------SSEEEEEESSSCTTCBEEEEEE
T ss_pred             CCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCC---------CCEEEEEecCCCCceEEEEEEE
Confidence             66789999999999999887 33   456677778888877 799998         666654 44555    677777


Q ss_pred             cCCCC
Q 046226          410 VTRPK  414 (434)
Q Consensus       410 ~~~~~  414 (434)
                      +.+++
T Consensus       389 ~~~~~  393 (706)
T 2z3z_A          389 IKGGK  393 (706)
T ss_dssp             TTCCC
T ss_pred             cCCCC
Confidence            76654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=1.8e-20  Score=168.71  Aligned_cols=272  Identities=14%  Similarity=0.130  Sum_probs=178.9

Q ss_pred             eeccccEEEEEE--cCCEEEEEeCC-CeEEEecCC--Cce--eEeeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEee
Q 046226           89 LKKDGQILCIAV--GNGFIYTGSDS-NVIRIWKQP--EFT--ECGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWR  158 (434)
Q Consensus        89 ~~h~~~v~~~~~--~~~~l~tg~~d-g~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd  158 (434)
                      ..|...+.+++|  ++++|++++.+ +.|++|++.  +++  .+..+..+. .+..++|+|+  .+++++. ++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            457778999999  88888888876 999999987  443  444555444 7889999997  5666665 88999999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCC-CeeEE----Ec
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRD-SKCIE----TI  232 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~----~~  232 (434)
                      +..+........                    ......+.+++|+|+++++++++ .++.|.+||+.+ ++...    .+
T Consensus       113 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  172 (343)
T 1ri6_A          113 LEDGLPVGVVDV--------------------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV  172 (343)
T ss_dssp             EETTEEEEEEEE--------------------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCCcccccccc--------------------ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc
Confidence            852211111110                    02334588999999999888887 899999999987 65432    22


Q ss_pred             cc-CccCeEEEEEcCCC-eEE-EEeCCCeEEEEecccccCcce-eEEEEEeccc---ccCeEEEEEecCCCEEEE-EcCC
Q 046226          233 QA-HSEPINALVVADDG-VLY-SASDDATVRVWRRYFYSENQL-HTLILTLTAK---YSPVKTLTLTLDDGLLYG-GCTD  304 (434)
Q Consensus       233 ~~-~~~~v~~~~~~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~l~~-~~~d  304 (434)
                      .. ....+.+++|+|++ .++ ++..++.|.+||+........ ..........   ...+..++|+|++++|++ +..+
T Consensus       173 ~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~  252 (343)
T 1ri6_A          173 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA  252 (343)
T ss_dssp             ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence            22 34578899999999 554 445889999999862222111 1111112111   235678999999988874 4579


Q ss_pred             CeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEec-CCCcEEEEeccCC-CceeeEEEeeccccceeEEEE
Q 046226          305 GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGS-ADSTSRVWAREQD-GRHTMLAVLVGHRGPIRCAIA  380 (434)
Q Consensus       305 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~  380 (434)
                      +.|.+||+............+..+.. +.+++|+  +++|++++ .++.|.+|+++.. +..+.+..+... ....+++|
T Consensus       253 ~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~  330 (343)
T 1ri6_A          253 SLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVV  330 (343)
T ss_dssp             TEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEE
T ss_pred             CEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEE
Confidence            99999998732222222222323332 5666665  67777766 6899999966532 233455555543 44567888


Q ss_pred             eec
Q 046226          381 FLG  383 (434)
Q Consensus       381 ~~~  383 (434)
                      .++
T Consensus       331 ~~~  333 (343)
T 1ri6_A          331 NAH  333 (343)
T ss_dssp             EEE
T ss_pred             Ecc
Confidence            776

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=7.6e-21  Score=188.33  Aligned_cols=291  Identities=10%  Similarity=0.024  Sum_probs=192.1

Q ss_pred             ccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCC-----CC
Q 046226           93 GQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTW-----DN  163 (434)
Q Consensus        93 ~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~-----~~  163 (434)
                      ..|.+++|  + +.++.+. |+.|++||+.+++... +..+...+.+++|+|+  .|+. +.|+.|++||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCC
Confidence            46999999  6 6665554 5999999998887654 3446677889999998  5665 5789999999987     54


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe------------------------------
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS------------------------------  213 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------------------------------  213 (434)
                      .......     ....+   ..+......+...+.+++|+|||++|++++                              
T Consensus       158 ~~~~~~~-----~~~~~---~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g  229 (706)
T 2z3z_A          158 AIAVTID-----GTETL---VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG  229 (706)
T ss_dssp             CEESCSC-----CBTTE---EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred             cEEeccC-----CCCCe---EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence            3322110     00000   000001112334468999999999999987                              


Q ss_pred             ---cCCcEEEEEcCCCeeEEEcc--cCccCeEEEEEcCCC-eEEEEeCCC-----eEEEEecccccCcceeEEEEEe-cc
Q 046226          214 ---LDKTIKVWRIRDSKCIETIQ--AHSEPINALVVADDG-VLYSASDDA-----TVRVWRRYFYSENQLHTLILTL-TA  281 (434)
Q Consensus       214 ---~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~-~~  281 (434)
                         .+..|++||+.+++......  .|...+.+++|+||+ .|++++.++     .|++||+..  ........... ..
T Consensus       230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~--g~~~~~~~~~~~~~  307 (706)
T 2z3z_A          230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET--GRFVRTLFVETDKH  307 (706)
T ss_dssp             SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT--CCEEEEEEEEECSS
T ss_pred             CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC--CceeeEEEEccCCC
Confidence               34679999999888655442  466789999999999 788877665     899999872  11111111111 11


Q ss_pred             cccCeEEEEEec--CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEE-EEee--CCEEEE-ecCCC----cE
Q 046226          282 KYSPVKTLTLTL--DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC-LASV--ANYVIS-GSADS----TS  351 (434)
Q Consensus       282 ~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~--~~~l~s-~~~dg----~i  351 (434)
                      ....+..++|+|  +|++++++..||.++||+++.....   ...+..+...+.. ++|+  ++.|+. +..++    .|
T Consensus       308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~---~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l  384 (706)
T 2z3z_A          308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL---IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF  384 (706)
T ss_dssp             CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE---EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred             eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE---EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence            111346789999  9999999999999999987522221   1233455555654 5665  665554 44444    56


Q ss_pred             EEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC----CeEEEEecCCCC
Q 046226          352 RVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD----GVLKMWRVTRPK  414 (434)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D----g~v~iw~~~~~~  414 (434)
                      +.||+.++.    ...+ .|...+.+++|+|+         |++|+..+.+    +.|++||+.+++
T Consensus       385 ~~~d~~~~~----~~~l-~~~~~~~~~~~spd---------g~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          385 YCIDIKGGK----TKDL-TPESGMHRTQLSPD---------GSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEETTCCC----CEES-CCSSSEEEEEECTT---------SSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEEcCCCC----ceec-cCCCceEEEEECCC---------CCEEEEEecCCCCCcEEEEEECCCCe
Confidence            666766642    2233 36677899999999         7877766443    569999998775

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=8.3e-21  Score=175.89  Aligned_cols=200  Identities=12%  Similarity=0.057  Sum_probs=144.1

Q ss_pred             ccEEEEEE--cCCEEEEEeCCCeEEEecCCCce----------eEee-----ccCCCccEEEEEEeCC--EEE----EEE
Q 046226           93 GQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT----------ECGR-----LKAKTSMVVAMEVSHD--RVY----AAY  149 (434)
Q Consensus        93 ~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~----------~~~~-----~~~~~~~v~~l~~~~~--~l~----~~s  149 (434)
                      ..+..+++  ++.++++|+.|+ ++||+.....          .+..     ...+...|.+++|+++  .|+    +++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            34666777  788999999888 8887642110          0110     1125667999999997  666    567


Q ss_pred             cCCeEEEeecCCC--------CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEE
Q 046226          150 GDGKIRVWRSTWD--------NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKV  220 (434)
Q Consensus       150 ~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~v  220 (434)
                      .|+.|++||+...        +.+....                   .+.+|...|.+++|+|+ +.+|++++.||+|++
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i  176 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHK-------------------LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV  176 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEE-------------------CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeee-------------------ccCCCCCceEEEEECCCCCCEEEEEECCCeEEE
Confidence            7999999998653        1111111                   12369999999999998 789999999999999


Q ss_pred             EEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe---cccccCeEEEEEecCCC
Q 046226          221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL---TAKYSPVKTLTLTLDDG  296 (434)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~  296 (434)
                      ||++++..+.....|...|.+++|+|++ +|++|+.||.|++||++   ...........   ..|...+.+++|++++.
T Consensus       177 wD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~  253 (434)
T 2oit_A          177 LQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT---LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV  253 (434)
T ss_dssp             EEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT---CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred             EEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC---CcccccccCCcccCCCCceeEEEEEEecCce
Confidence            9999988777777789999999999999 99999999999999986   11111110000   01234789999999887


Q ss_pred             EEEEE-cCCC------eEEEEEcCcc
Q 046226          297 LLYGG-CTDG------YIHYWHKGWF  315 (434)
Q Consensus       297 ~l~~~-~~dg------~i~i~d~~~~  315 (434)
                      ++++. ..+|      .+++|+++..
T Consensus       254 ~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          254 FAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEEccCCCccCCCCceEEEEeccC
Confidence            77543 3343      3899999754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1e-20  Score=175.31  Aligned_cols=226  Identities=12%  Similarity=0.115  Sum_probs=153.5

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccc
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDK  189 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (434)
                      +.+++|+....       .+...+..++++++  .+++++.|+ +++|+........     .  ...............
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~-----~--~~~~~~~~~~~~~~~   87 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN-----K--PGDDPNKIVDKVQGL   87 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC-----C--TTCCTTCEEECCCCE
T ss_pred             eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc-----c--cccCcccccccCccc
Confidence            56888875321       12345788888876  778887777 8898753211000     0  000000000000001


Q ss_pred             ccCcCCCeEEEEEecCCCEEE----EEecCCcEEEEEcCCC--------e---eEEEcccCccCeEEEEEcCC-C-eEEE
Q 046226          190 MMKHMGPITSIAINVSDDTLY----SASLDKTIKVWRIRDS--------K---CIETIQAHSEPINALVVADD-G-VLYS  252 (434)
Q Consensus       190 ~~~~~~~v~~~~~~~~~~~l~----s~~~dg~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~-~l~s  252 (434)
                      ...+...|.+++|+|++++|+    +|+.|+.|++||+.++        +   .+..+.+|...|.+++|+|+ + +|++
T Consensus        88 ~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A           88 LVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred             cccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence            124677899999999999999    7888999999998754        1   24566779999999999998 5 8999


Q ss_pred             EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc---cCcc
Q 046226          253 ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL---QGHT  329 (434)
Q Consensus       253 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~  329 (434)
                      ++.||.|++||++.      .........|...|.+++|+|+|++|++|+.||.|++||++ ...........   ..|.
T Consensus       168 ~s~Dg~v~iwD~~~------~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~  240 (434)
T 2oit_A          168 CLADGSIAVLQVTE------TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHP  240 (434)
T ss_dssp             EETTSCEEEEEESS------SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSC
T ss_pred             EECCCeEEEEEcCC------CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCc
Confidence            99999999999982      12333445688899999999999999999999999999987 22111111111   1345


Q ss_pred             cceEEEEeeCC--EEE-EecCCC------cEEEEeccCC
Q 046226          330 HAVMCLASVAN--YVI-SGSADS------TSRVWAREQD  359 (434)
Q Consensus       330 ~~v~~~~~~~~--~l~-s~~~dg------~i~iwd~~~~  359 (434)
                      ..|.++.|+++  +++ ....||      .+++|++...
T Consensus       241 ~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          241 VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            58899999855  332 233443      3899999865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=6.8e-22  Score=196.39  Aligned_cols=279  Identities=9%  Similarity=-0.013  Sum_probs=186.4

Q ss_pred             EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCc---cEEEEEEeCC--EEEEEEcC---------CeEEEee
Q 046226           95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS---MVVAMEVSHD--RVYAAYGD---------GKIRVWR  158 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~l~~~~~--~l~~~s~d---------g~i~vwd  158 (434)
                      +.+++|  +|+++++ +.||+|++||+.+++....+..|..   .|.+++|+||  .|++++.+         +.|.+||
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            456777  7787766 7899999999999988877777665   4999999998  78887764         7888999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP  238 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  238 (434)
                      +.+++. ..+.  .                 ..+|...+..++|+|||++|+.++. +.|++||+.+++.......+...
T Consensus        98 ~~~~~~-~~l~--~-----------------~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~  156 (723)
T 1xfd_A           98 IPHGDP-QSLD--P-----------------PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG  156 (723)
T ss_dssp             SSSCCC-EECC--C-----------------TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT
T ss_pred             CCCCce-Eecc--C-----------------CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC
Confidence            987654 1111  0                 0135556889999999999999885 79999999998876665554433


Q ss_pred             e------------------EEEEEcCCC-eEEEEeCCC----------------------------------eEEEEecc
Q 046226          239 I------------------NALVVADDG-VLYSASDDA----------------------------------TVRVWRRY  265 (434)
Q Consensus       239 v------------------~~~~~~~~~-~l~s~~~dg----------------------------------~i~iwd~~  265 (434)
                      +                  .+++|+||| .|++++.|+                                  .|++||+.
T Consensus       157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~  236 (723)
T 1xfd_A          157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (723)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence            3                  789999999 777776543                                  78888876


Q ss_pred             cccCcceeEEEEEecc------cccCeEEEEEecCCCEEEEEcC----CCeEEEEEcCcccccccccCcccCcccce---
Q 046226          266 FYSENQLHTLILTLTA------KYSPVKTLTLTLDDGLLYGGCT----DGYIHYWHKGWFSAQLQYGGALQGHTHAV---  332 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v---  332 (434)
                      ...  .    ...+..      +...+..++|+|||++|++...    +..|++||+.+.........   .+...+   
T Consensus       237 ~~~--~----~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~  307 (723)
T 1xfd_A          237 GPT--H----DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED---ESEAWLHRQ  307 (723)
T ss_dssp             SSC--C----CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE---ECSSCCCCC
T ss_pred             CCc--e----eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe---ccCCEEecc
Confidence            211  1    112222      2567889999999998877643    36899999875443221111   111221   


Q ss_pred             -EEEEe--eCCEEEE--ecCCC------cEEEEeccCCCceeeEEEeeccccceeE-EEEeecccCCCCCCcccEEEEee
Q 046226          333 -MCLAS--VANYVIS--GSADS------TSRVWAREQDGRHTMLAVLVGHRGPIRC-AIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       333 -~~~~~--~~~~l~s--~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                       ..+.|  +|+.|+.  +..++      .|++||+..++...+...+..+...+.. ++|+|+         ++.|+..+
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd---------g~~l~~~~  378 (723)
T 1xfd_A          308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK---------GNKIYFLS  378 (723)
T ss_dssp             CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT---------TTEEEEEE
T ss_pred             CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC---------CCEEEEEE
Confidence             13444  5675553  55677      5666773233210013333333344444 689999         88887655


Q ss_pred             cC---CeEEEEecCCC
Q 046226          401 LD---GVLKMWRVTRP  413 (434)
Q Consensus       401 ~D---g~v~iw~~~~~  413 (434)
                      .+   +.+++|++...
T Consensus       379 ~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          379 TEDLPRRRQLYSANTV  394 (723)
T ss_dssp             SSSCTTCCEEEEECSS
T ss_pred             cCCCCcceEEEEEeCC
Confidence            54   88999998753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=8.9e-21  Score=183.43  Aligned_cols=265  Identities=6%  Similarity=-0.007  Sum_probs=184.8

Q ss_pred             ccccEEEEEE--cCCEEEEEeC-CCeEEEecCCCceeEeeccCCC-ccEEEEEEeCCE-EEEEEc---CCeEEEeecCC-
Q 046226           91 KDGQILCIAV--GNGFIYTGSD-SNVIRIWKQPEFTECGRLKAKT-SMVVAMEVSHDR-VYAAYG---DGKIRVWRSTW-  161 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~-l~~~s~---dg~i~vwd~~~-  161 (434)
                      +..+|++++|  ||+.||+++. ||+++||++.+++... +..|. ..+..++|+|+. ++++..   +....+|.+.. 
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETT
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCCeEEEEeccCCCCcceEEEEEecc
Confidence            3567999998  9999999887 9999999986666544 44444 689999999994 444443   45567766543 


Q ss_pred             -CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE-EEEEecCCcEEEEEcCCCeeEEEcccCccCe
Q 046226          162 -DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT-LYSASLDKTIKVWRIRDSKCIETIQAHSEPI  239 (434)
Q Consensus       162 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v  239 (434)
                       ......+                       .....+...+|+|+++. +++...++.+.+||+.+++.......+.   
T Consensus        99 ~~g~~~~l-----------------------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---  152 (582)
T 3o4h_A           99 RPGEEQRL-----------------------EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---  152 (582)
T ss_dssp             STTCCEEC-----------------------TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---
T ss_pred             CCCccccc-----------------------cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---
Confidence             2211111                       12223446688888853 3344445556699999987655554333   


Q ss_pred             EEEEEcCCC-eEEEEeCC----CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC--eEEEEEc
Q 046226          240 NALVVADDG-VLYSASDD----ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG--YIHYWHK  312 (434)
Q Consensus       240 ~~~~~~~~~-~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~  312 (434)
                      .+++|+||| .|++++.+    +.|++||+..  + ..    ..+..+...+..++|+|||++|+++..++  .|++||+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~--g-~~----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS--G-GL----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDP  225 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTT--C-CC----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC--C-Cc----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence            789999999 78877766    7899999761  1 11    23456777889999999999999888888  8999998


Q ss_pred             CcccccccccCcccCcccceEE----------EEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          313 GWFSAQLQYGGALQGHTHAVMC----------LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~v~~----------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      ......     .+.+|...+..          ++.+|.++++++.|+.+++|++  +   +...   ...+.+.+++|+ 
T Consensus       226 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g---~~~~---~~~~~v~~~~~s-  291 (582)
T 3o4h_A          226 RDGSVE-----DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G---ERVE---APQGNHGRVVLW-  291 (582)
T ss_dssp             TTCCEE-----ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T---EEEC---CCSSEEEEEEEE-
T ss_pred             CCCcEE-----EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C---Ceec---cCCCceEEEEec-
Confidence            754433     23344443333          3345778899999999999999  4   3332   344678899999 


Q ss_pred             cccCCCCCCcccEEEEeecCCe---EEEEecCC
Q 046226          383 GRFGEETEDEYCTICTGSLDGV---LKMWRVTR  412 (434)
Q Consensus       383 ~~~~~~~~~~~~~l~s~~~Dg~---v~iw~~~~  412 (434)
                      +         +.++++++.+..   |.+|+...
T Consensus       292 d---------g~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          292 R---------GKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             T---------TEEEEEEEETTEEEEEEEETTCC
T ss_pred             C---------CEEEEEEcCCCCCCeEEEEcCCC
Confidence            7         888998888754   66666553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=4.8e-20  Score=189.90  Aligned_cols=274  Identities=8%  Similarity=-0.042  Sum_probs=203.9

Q ss_pred             ccccEEEEEE---cCCEEEEEeCCCeEEEecCCCceeEeeccCCCc-cEEEEEEeCC--EEEEEEcCCeEE-EeecCCCC
Q 046226           91 KDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS-MVVAMEVSHD--RVYAAYGDGKIR-VWRSTWDN  163 (434)
Q Consensus        91 h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~--~l~~~s~dg~i~-vwd~~~~~  163 (434)
                      |.+.|.+++|   +|++|++++ ++.|.+|+..+++.. .+..|.. .+..++|+ +  .++.++.++.+. +||+..+.
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~  370 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK  370 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence            4456777777   577888887 789999999877654 3666777 89999999 8  688888888888 88876543


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV  243 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  243 (434)
                      .. .+                      .+|...+..++|+|||++|++++.++.|++||+.+++....+..|...+.+++
T Consensus       371 ~~-~l----------------------~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~  427 (1045)
T 1k32_A          371 AE-KF----------------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT  427 (1045)
T ss_dssp             EE-EC----------------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE
T ss_pred             ce-Ee----------------------cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceE
Confidence            21 11                      14778899999999999999999999999999999998887778999999999


Q ss_pred             EcCCC-eEEEEeCC----------CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226          244 VADDG-VLYSASDD----------ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK  312 (434)
Q Consensus       244 ~~~~~-~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  312 (434)
                      |+||+ +|++++.+          +.|++||+..      .. ...+..+...+..++|+|+|++|++++.++...+|+.
T Consensus       428 ~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~------g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          428 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG------RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT------TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ECCCCCeEEEEecCccccccCCCCCeEEEEECCC------Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence            99999 77777654          4899999871      12 4456667778889999999999999998877777764


Q ss_pred             Cccccc---------------------------------------ccccCcccCcccceEEEEeeC--CEEEE-------
Q 046226          313 GWFSAQ---------------------------------------LQYGGALQGHTHAVMCLASVA--NYVIS-------  344 (434)
Q Consensus       313 ~~~~~~---------------------------------------~~~~~~~~~~~~~v~~~~~~~--~~l~s-------  344 (434)
                      ......                                       ......+..|...+..+.+++  .++++       
T Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~  580 (1045)
T 1k32_A          501 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF  580 (1045)
T ss_dssp             SSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSH
T ss_pred             hccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcc
Confidence            321110                                       000112234556677777764  45664       


Q ss_pred             ------ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          345 ------GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       345 ------~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                            ...+..|.+||+.++..    ..+.   ..+..++++|+         |+.|++++.| .|++||+.+++
T Consensus       581 ~~~~~~~~~~~~l~~~d~~~~~~----~~l~---~~v~~~~~S~D---------G~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          581 AAYYQGAPEKGVLLKYDVKTRKV----TEVK---NNLTDLRLSAD---------RKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             HHHHHCCCCCEEEEEEETTTCCE----EEEE---EEEEEEEECTT---------SCEEEEEETT-SCEEEEESSCT
T ss_pred             cccccccCCCceEEEEECCCCcE----EEee---cCcceEEECCC---------CCEEEEEcCC-cEEEEeCccCc
Confidence                  12355788889887632    2222   56788999999         9999998866 89999998876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=9.4e-21  Score=166.62  Aligned_cols=224  Identities=8%  Similarity=-0.047  Sum_probs=165.4

Q ss_pred             EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC-C
Q 046226          148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD-S  226 (434)
Q Consensus       148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~  226 (434)
                      ++.|+.|++||+.+++.....                       .|...|.+++|+|++++|++++ ++.|++||+.+ +
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~-----------------------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~   73 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVW-----------------------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP   73 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEE-----------------------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC
T ss_pred             CCcceeEEEEeCCCCceeeec-----------------------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC
Confidence            346899999998765433222                       4888999999999999999987 88999999999 8


Q ss_pred             eeEEEcccC-ccCeEEEEEcCCC-eEEEEe--CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEE-EE
Q 046226          227 KCIETIQAH-SEPINALVVADDG-VLYSAS--DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLY-GG  301 (434)
Q Consensus       227 ~~~~~~~~~-~~~v~~~~~~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~  301 (434)
                      +.......+ ...+.+++|+|++ .|++++  .++...+|.+......     ...+.. ...+..++|+|++++|+ ++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~-~~~~~~~~~spdg~~l~~~~  147 (297)
T 2ojh_A           74 SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-----PRLMTK-NLPSYWHGWSPDGKSFTYCG  147 (297)
T ss_dssp             SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-----CEECCS-SSSEEEEEECTTSSEEEEEE
T ss_pred             CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-----eEEeec-CCCccceEECCCCCEEEEEE
Confidence            777666555 4678999999999 788877  4456666665421111     122222 23588899999999887 77


Q ss_pred             cCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEec-CCCcEEEEeccCCCceeeEEEeeccccceeEE
Q 046226          302 CTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGS-ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCA  378 (434)
Q Consensus       302 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~  378 (434)
                      ..++.+.+|+++......   ..+..+...+.++.|+  +++|+.++ .++.+++|++....  ..+..+..|...+..+
T Consensus       148 ~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~  222 (297)
T 2ojh_A          148 IRDQVFDIYSMDIDSGVE---TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFP  222 (297)
T ss_dssp             EETTEEEEEEEETTTCCE---EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEE
T ss_pred             CCCCceEEEEEECCCCcc---eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCe
Confidence            789999999975332222   2334566678888886  56666555 58999999987322  3456677788889999


Q ss_pred             EEeecccCCCCCCcccEEEEeecC-----------CeEEEEecCCCCc
Q 046226          379 IAFLGRFGEETEDEYCTICTGSLD-----------GVLKMWRVTRPKS  415 (434)
Q Consensus       379 ~~~~~~~~~~~~~~~~~l~s~~~D-----------g~v~iw~~~~~~~  415 (434)
                      +|+|+         +++|++++.+           +.|++||+.+++.
T Consensus       223 ~~s~d---------g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          223 HPSPS---------GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EECTT---------SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             EECCC---------CCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            99999         8888888876           5699999988764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=7.6e-20  Score=181.66  Aligned_cols=313  Identities=8%  Similarity=-0.039  Sum_probs=189.5

Q ss_pred             CCCCCCCCCCCccCCCCCCCccc-----ceeeeEEEeeccc---cEEEEEE--cCCEEEEEeCC---------CeEEEec
Q 046226           58 LSSPRHPFNPTAAAGSSSPETSS-----SYRCISSVLKKDG---QILCIAV--GNGFIYTGSDS---------NVIRIWK  118 (434)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~---~v~~~~~--~~~~l~tg~~d---------g~i~iwd  118 (434)
                      ...+.++++++.+++ +.+.++.     +.++...+.+|..   .|.+++|  +|++|++++.+         +.|.+||
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            455667777776665 4455544     3445566666665   4999999  99999999774         7888999


Q ss_pred             CCCcee--EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC
Q 046226          119 QPEFTE--CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM  194 (434)
Q Consensus       119 ~~~~~~--~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (434)
                      +.+++.  +.....|...+..++|+||  .|+.++. +.|++||+.+++........    ....+..-.........-.
T Consensus        98 ~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~----~~~~~~~g~~~~v~~ee~~  172 (723)
T 1xfd_A           98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG----KEGVIYNGLSDWLYEEEIL  172 (723)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCC----BTTTEEEEECCHHHHHTTS
T ss_pred             CCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCC----CCCceECcccceeEEEEec
Confidence            998775  2222345556889999998  6666664 89999999876543322100    0000000000000000001


Q ss_pred             CCeEEEEEecCCCEEEEEecCC----------------------------------cEEEEEcCCCeeEEEcccC-----
Q 046226          195 GPITSIAINVSDDTLYSASLDK----------------------------------TIKVWRIRDSKCIETIQAH-----  235 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~-----  235 (434)
                      ..+.+++|+|||++|++++.|+                                  .|++||+.+++....+..+     
T Consensus       173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~  252 (723)
T 1xfd_A          173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (723)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence            2348999999999999887553                                  7999999988865666554     


Q ss_pred             -ccCeEEEEEcCCC-eEEEEeC----CCeEEEEecccccCcceeEEEEEecccccCe----EEEEEecCCCEEEE--EcC
Q 046226          236 -SEPINALVVADDG-VLYSASD----DATVRVWRRYFYSENQLHTLILTLTAKYSPV----KTLTLTLDDGLLYG--GCT  303 (434)
Q Consensus       236 -~~~v~~~~~~~~~-~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~  303 (434)
                       ...+..++|+||| ++++...    +..|++||+..  . .......  ..+...+    ..++|+|||+.|+.  +..
T Consensus       253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~--g-~~~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  327 (723)
T 1xfd_A          253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT--G-VCTKKHE--DESEAWLHRQNEEPVFSKDGRKFFFIRAIP  327 (723)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT--C-CEEEEEE--EECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred             ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC--C-cceEEEE--eccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence             5678999999999 6655542    35799999862  1 1111111  1122223    37899999997775  456


Q ss_pred             CC------eEEEEEcCcccccccccCcccCcccceE---EEEeeCCEEEEecC-C--CcEEEEeccCCCceeeEEEeec-
Q 046226          304 DG------YIHYWHKGWFSAQLQYGGALQGHTHAVM---CLASVANYVISGSA-D--STSRVWAREQDGRHTMLAVLVG-  370 (434)
Q Consensus       304 dg------~i~i~d~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~-  370 (434)
                      ++      .|.+||+...... .....+..+...+.   +++.+++.|+..+. +  +.++||++...+. .....+.. 
T Consensus       328 ~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~  405 (723)
T 1xfd_A          328 QGGRGKFYHITVSSSQPNSSN-DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN-FNRQCLSCD  405 (723)
T ss_dssp             CSSSSCEEEEEEECSSCCSSS-CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT-CCCBCSSTT
T ss_pred             cCCCcceeEEEEEeccCCCCc-cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC-CCcceeccc
Confidence            67      4666662111110 00112222222333   33445777765544 4  7899999875432 11222333 


Q ss_pred             --cccceeEEEEeec
Q 046226          371 --HRGPIRCAIAFLG  383 (434)
Q Consensus       371 --h~~~v~~~~~~~~  383 (434)
                        |...+..++|+|+
T Consensus       406 ~~~~~~~~~~~~spd  420 (723)
T 1xfd_A          406 LVENCTYFSASFSHS  420 (723)
T ss_dssp             SSSSCCCCEEEECTT
T ss_pred             ccCCCCeEEEEECCC
Confidence              6777889999999

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=1.9e-19  Score=162.69  Aligned_cols=242  Identities=12%  Similarity=0.047  Sum_probs=174.1

Q ss_pred             CccEEEEEEeCC--EEEEEEc-------CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE
Q 046226          132 TSMVVAMEVSHD--RVYAAYG-------DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI  202 (434)
Q Consensus       132 ~~~v~~l~~~~~--~l~~~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  202 (434)
                      ...+..++|+|+  .+++++.       ++.|.+||..+++....+.                       ....+..++|
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----------------------~~~~~~~~~~   96 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-----------------------NDLKPFGATI   96 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-----------------------ESSCCCSEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-----------------------cCCCcceEEE
Confidence            345788999997  6777663       5689999998776555553                       2344678999


Q ss_pred             ecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccC---------eEEEEEcCCC-eEEEEe--CCCeEEEEecccccC
Q 046226          203 NVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEP---------INALVVADDG-VLYSAS--DDATVRVWRRYFYSE  269 (434)
Q Consensus       203 ~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~-~l~s~~--~dg~i~iwd~~~~~~  269 (434)
                      +|++++++++ ..++.|.+||..+++.+..+..+...         +.+++++|++ .+++++  .++.|.+||+.    
T Consensus        97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~----  172 (353)
T 3vgz_A           97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG----  172 (353)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT----
T ss_pred             CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC----
Confidence            9999966555 55799999999999988887764432         6889999998 555554  57899999987    


Q ss_pred             cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEec-
Q 046226          270 NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGS-  346 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-  346 (434)
                        .......+..+...+..++|+|+++++++++.++.|.+||+..............++...+.+++++  ++++++++ 
T Consensus       173 --~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  250 (353)
T 3vgz_A          173 --NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS  250 (353)
T ss_dssp             --TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred             --CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence              2233344443445678899999999999999999999999876544333222222344556666665  66655554 


Q ss_pred             CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccE-EEEeecCCeEEEEecCCCCcc
Q 046226          347 ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT-ICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      .++.|.+||+.++   +.+..+....  ...++|+|+         +++ +++...++.|.+||+.+++..
T Consensus       251 ~~~~v~~~d~~~~---~~~~~~~~~~--~~~~~~s~d---------g~~l~v~~~~~~~v~~~d~~~~~~~  307 (353)
T 3vgz_A          251 KAAEVLVVDTRNG---NILAKVAAPE--SLAVLFNPA---------RNEAYVTHRQAGKVSVIDAKSYKVV  307 (353)
T ss_dssp             SSSEEEEEETTTC---CEEEEEECSS--CCCEEEETT---------TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCEEEEEECCCC---cEEEEEEcCC--CceEEECCC---------CCEEEEEECCCCeEEEEECCCCeEE
Confidence            5599999999887   4444444433  256899998         764 455557999999999887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1.8e-19  Score=161.42  Aligned_cols=251  Identities=10%  Similarity=0.087  Sum_probs=166.0

Q ss_pred             ceeeeEEEeeccccEEEEEE--cCCEEEEEeC-CCeEEEecCCCcee-EeeccCCCccEEEEEEeCC--EEEEEEcCC--
Q 046226           81 SYRCISSVLKKDGQILCIAV--GNGFIYTGSD-SNVIRIWKQPEFTE-CGRLKAKTSMVVAMEVSHD--RVYAAYGDG--  152 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~-dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~--~l~~~s~dg--  152 (434)
                      +.+.+..+..+...+ +++|  ++++|++++. ++.|.+||..+++. ...+..+..+..+++|+|+  .++++..++  
T Consensus        29 ~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  107 (331)
T 3u4y_A           29 TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHP  107 (331)
T ss_dssp             TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSS
T ss_pred             ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCc
Confidence            344556666566667 8999  7876666655 89999999999887 7777777776666999997  666444442  


Q ss_pred             -eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCc-EEEEEcCCCeeE
Q 046226          153 -KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKT-IKVWRIRDSKCI  229 (434)
Q Consensus       153 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~-i~vwd~~~~~~~  229 (434)
                       .|.+||+..++.+..+.                       ......+++|+|++++++++ ..++. |.+|++.....+
T Consensus       108 ~~i~v~d~~~~~~~~~~~-----------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~  164 (331)
T 3u4y_A          108 FNMQSYSFLKNKFISTIP-----------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL  164 (331)
T ss_dssp             CEEEEEETTTTEEEEEEE-----------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE
T ss_pred             ccEEEEECCCCCeEEEEE-----------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE
Confidence             89999998765544332                       34456899999999866655 55588 999998754332


Q ss_pred             ----EEcccCccCeEEEEEcCCC-eE-EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-
Q 046226          230 ----ETIQAHSEPINALVVADDG-VL-YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-  302 (434)
Q Consensus       230 ----~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  302 (434)
                          ............++|+|++ ++ +++..++.|.+||+....  . ......+. ....+..++|+|+|++++++. 
T Consensus       165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~--~-~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE--N-ITLLNAVG-TNNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT--S-CEEEEEEE-CSSCCCCEEECTTSSEEEEECS
T ss_pred             eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc--c-cceeeecc-CCCCCceEEECCCCCEEEEEEc
Confidence                1112344568899999999 44 555578999999987222  1 11122233 235678899999999776665 


Q ss_pred             CCCeEEEEEcCcccccc--cccCcccCcccce-----EEEEeeCCEEE-EecCCCcEEEEeccCC
Q 046226          303 TDGYIHYWHKGWFSAQL--QYGGALQGHTHAV-----MCLASVANYVI-SGSADSTSRVWAREQD  359 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~v-----~~~~~~~~~l~-s~~~dg~i~iwd~~~~  359 (434)
                      .++.|.+||+.+.....  .....+..+....     .++..++++|+ ++..++.|.+||+...
T Consensus       241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            57889999987544311  1111111111111     24445577665 4556779999999864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=6.2e-20  Score=165.65  Aligned_cols=264  Identities=14%  Similarity=0.064  Sum_probs=175.9

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCC-ccEEEEEEeCC--EEEEE-EcCCeEEEeecCCCCCceeeEeeeccCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT-SMVVAMEVSHD--RVYAA-YGDGKIRVWRSTWDNGVKHVKLATIPKT  176 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~--~l~~~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~  176 (434)
                      ++.++++++.++.|++||..+++.+..+..+. ..+..++|+|+  .++++ ..++.|.+||+.+++....+.....+  
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~--   87 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP--   87 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST--
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc--
Confidence            67788999999999999999999888876543 25778999987  45544 46899999999876554443210000  


Q ss_pred             CCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC------------CcEEEEEcCCCee---EEEcccCccCeEE
Q 046226          177 GGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD------------KTIKVWRIRDSKC---IETIQAHSEPINA  241 (434)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~---~~~~~~~~~~v~~  241 (434)
                                    ......+..++|+|++++|++++.+            +.|.+||+.+++.   +..+. +...+.+
T Consensus        88 --------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~  152 (349)
T 1jmx_B           88 --------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYL  152 (349)
T ss_dssp             --------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCC
T ss_pred             --------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccc
Confidence                          0012347889999999999998865            8999999988543   33333 3346889


Q ss_pred             EEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccc------------------------cCeEEEEEecCCC-
Q 046226          242 LVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY------------------------SPVKTLTLTLDDG-  296 (434)
Q Consensus       242 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~~~~~~-  296 (434)
                      ++|+|++.+++++.  .|.+||+...      .....+....                        .....+++++++. 
T Consensus       153 ~~~s~dg~l~~~~~--~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  224 (349)
T 1jmx_B          153 MRAADDGSLYVAGP--DIYKMDVKTG------KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ  224 (349)
T ss_dssp             EEECTTSCEEEESS--SEEEECTTTC------CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred             eeECCCCcEEEccC--cEEEEeCCCC------ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence            99999995555443  4999998621      1111222111                        0233455654431 


Q ss_pred             ----------EEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEE--e-eCCEEEEecCCCcEEEEeccCCCcee
Q 046226          297 ----------LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA--S-VANYVISGSADSTSRVWAREQDGRHT  363 (434)
Q Consensus       297 ----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~s~~~dg~i~iwd~~~~~~~~  363 (434)
                                ++.....++.+.+|++..             +...+.++.  . ++++++++  ++.|++||+.++   +
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~---~  286 (349)
T 1jmx_B          225 DPATADLLYGYLSVDLKTGKTHTQEFAD-------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR---K  286 (349)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEEEE-------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT---E
T ss_pred             CccccccceeEEEEeccCCcEEeccccc-------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccC---e
Confidence                      222444556677666521             222344454  4 56688877  889999999987   5


Q ss_pred             eEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          364 MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       364 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      .+..+.. ...+.+++|+|+         +++|++++.++.|++||+.+++.+.
T Consensus       287 ~~~~~~~-~~~~~~~~~s~d---------g~~l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          287 LIKAANL-DHTYYCVAFDKK---------GDKLYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             EEEEEEC-SSCCCEEEECSS---------SSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             EEEEEcC-CCCccceEECCC---------CCEEEEecCCCeEEEEeccccceee
Confidence            5555543 345778999998         7888888889999999999877543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=3.7e-18  Score=154.90  Aligned_cols=277  Identities=11%  Similarity=0.045  Sum_probs=176.1

Q ss_pred             EEEEEe----CCCeEEEecC--CCceeEeeccCCCccEEEEEEeCC--EEEEEEcC----CeEEEeecCCC-CCceeeEe
Q 046226          104 FIYTGS----DSNVIRIWKQ--PEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD----GKIRVWRSTWD-NGVKHVKL  170 (434)
Q Consensus       104 ~l~tg~----~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d----g~i~vwd~~~~-~~~~~~~~  170 (434)
                      ++++|+    .++.|.+|++  .+++.......+......++|+|+  .|++++.+    +.|.+|++... .....+..
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~   94 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNT   94 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeE
Confidence            455553    4568999865  445433222116667788999997  68888775    89999998754 22222110


Q ss_pred             eeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCCeeEEEc------cc--------C
Q 046226          171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDSKCIETI------QA--------H  235 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~------~~--------~  235 (434)
                      .                   ..+......+++  ++++|++++ .++.|.+|++.....+..+      .+        +
T Consensus        95 ~-------------------~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~  153 (361)
T 3scy_A           95 Q-------------------KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQT  153 (361)
T ss_dssp             E-------------------ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCS
T ss_pred             e-------------------ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccC
Confidence            0                   024456677777  788777776 5789999999754332211      11        1


Q ss_pred             ccCeEEEEEcCCC-eEEEE-eCCCeEEEEecccccC----c-cee--EEEEEecccccCeEEEEEecCCCEEEEEc-CCC
Q 046226          236 SEPINALVVADDG-VLYSA-SDDATVRVWRRYFYSE----N-QLH--TLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDG  305 (434)
Q Consensus       236 ~~~v~~~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~----~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg  305 (434)
                      ...+.+++|+|++ +++++ ..++.|.+|++.....    . ...  ............+..++|+|+|+++++++ .++
T Consensus       154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  233 (361)
T 3scy_A          154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG  233 (361)
T ss_dssp             SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred             CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence            2345889999999 45544 4589999999873221    1 111  01122233445678999999999887776 689


Q ss_pred             eEEEEEcCcccccc-cccCcccCcccceEEEEee--CCEEEEecC--CCcEEEEeccC-CCceeeEEEeeccccceeEEE
Q 046226          306 YIHYWHKGWFSAQL-QYGGALQGHTHAVMCLASV--ANYVISGSA--DSTSRVWAREQ-DGRHTMLAVLVGHRGPIRCAI  379 (434)
Q Consensus       306 ~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~  379 (434)
                      .|.+||+....... ........+.....+++++  |++|+++..  ++.|.+|++.. .+....+..+.. ...+.+++
T Consensus       234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~  312 (361)
T 3scy_A          234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFI  312 (361)
T ss_dssp             EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEE
T ss_pred             eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEE
Confidence            99999986332111 1111222333345666664  777766555  48999999962 233345555555 56788999


Q ss_pred             EeecccCCCCCCcccEEEEee-cCCeEEEEecC
Q 046226          380 AFLGRFGEETEDEYCTICTGS-LDGVLKMWRVT  411 (434)
Q Consensus       380 ~~~~~~~~~~~~~~~~l~s~~-~Dg~v~iw~~~  411 (434)
                      |+|+         |++|++++ .++.|.+|+++
T Consensus       313 ~spd---------g~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          313 ITPN---------GKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             ECTT---------SCEEEEEETTTTEEEEEEEC
T ss_pred             ECCC---------CCEEEEEECCCCCEEEEEEE
Confidence            9999         88888777 67999997665

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=2.1e-18  Score=156.48  Aligned_cols=276  Identities=13%  Similarity=0.090  Sum_probs=173.3

Q ss_pred             ccccEEEEEE--cCCEEEEEeCC----CeEEEecCCC--ce--eEeeccCCCccEEEEEEeCCEEEEEE-cCCeEEEeec
Q 046226           91 KDGQILCIAV--GNGFIYTGSDS----NVIRIWKQPE--FT--ECGRLKAKTSMVVAMEVSHDRVYAAY-GDGKIRVWRS  159 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~d----g~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~~~~~l~~~s-~dg~i~vwd~  159 (434)
                      |...+..++|  ++++|++++.+    +.|.+|++..  ++  .+.....+......+++....+++++ .++.|.+|++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence            6677788888  89999999886    7999998755  43  33444445667788888444677766 5899999999


Q ss_pred             CCCCCceeeEee-eccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCCee------E--
Q 046226          160 TWDNGVKHVKLA-TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDSKC------I--  229 (434)
Q Consensus       160 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~------~--  229 (434)
                      .....+...... .....+         ......+...+.+++|+|+++++++++ .++.|.+|++.....      +  
T Consensus       128 ~~~g~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~  198 (361)
T 3scy_A          128 GQDGALLPASDVIEFKGSG---------PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLT  198 (361)
T ss_dssp             CTTSCBCSCSEEEECCCCC---------SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEE
T ss_pred             CCCCcCcccceeEEccCCC---------CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceee
Confidence            765443222110 000000         000112344578999999999776655 478999999875431      1  


Q ss_pred             -----EEcccCccCeEEEEEcCCC-eEEEEe-CCCeEEEEecccccCcc-eeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226          230 -----ETIQAHSEPINALVVADDG-VLYSAS-DDATVRVWRRYFYSENQ-LHTLILTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       230 -----~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                           .....+......++|+|++ ++++++ .++.|.+||+..  ... ..........+......++|+|+|++|+++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~--g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~  276 (361)
T 3scy_A          199 KGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD--GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYAS  276 (361)
T ss_dssp             EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET--TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEE
T ss_pred             cccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC--CceEEeEEEecCCCCCCCcccEEECCCCCEEEEE
Confidence                 1122345567899999999 666665 689999999871  111 111122223334557899999999998776


Q ss_pred             cCC--CeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEec-CCCcEEEEecc--CCCceeeEEEe-ecccc
Q 046226          302 CTD--GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGS-ADSTSRVWARE--QDGRHTMLAVL-VGHRG  373 (434)
Q Consensus       302 ~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~--~~~~~~~~~~~-~~h~~  373 (434)
                      ..+  +.|.+|++............+.. ...+.+++|+  |++|++++ .++.|.+|++.  ++   +..... ..+..
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g---~~~~~~~~~~~~  352 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG---LLTDIKKDIKVD  352 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC---CEEECSCCEECS
T ss_pred             CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC---cEeecceeeeCC
Confidence            654  89999998633222222222222 2345566665  77777776 67899997654  44   222221 22445


Q ss_pred             ceeEEEEe
Q 046226          374 PIRCAIAF  381 (434)
Q Consensus       374 ~v~~~~~~  381 (434)
                      .+.|+.|.
T Consensus       353 ~p~~v~~~  360 (361)
T 3scy_A          353 KPVCLKFV  360 (361)
T ss_dssp             SEEEEEEE
T ss_pred             CCeEEEEc
Confidence            67888875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=2.7e-18  Score=154.88  Aligned_cols=255  Identities=12%  Similarity=0.098  Sum_probs=164.6

Q ss_pred             eeccccEEEEEE--cCCEEEEEeC---CCeEEEecCCCce--eEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEee
Q 046226           89 LKKDGQILCIAV--GNGFIYTGSD---SNVIRIWKQPEFT--ECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWR  158 (434)
Q Consensus        89 ~~h~~~v~~~~~--~~~~l~tg~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd  158 (434)
                      ..+...+..++|  +|+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|+  .|++++ .++.|.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            345667778888  777 555544   6899999997665  44444556777889999997  677777 689999999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC-CCeeE--EEccc-
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIR-DSKCI--ETIQA-  234 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~--~~~~~-  234 (434)
                      +........+........+..          ...+...+.+++|+|+++++++...++.|.+||+. +++..  ..+.. 
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~----------~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~  184 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPR----------PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME  184 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSS----------TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC
T ss_pred             eCCCCCeeecceeecCCCCCC----------ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC
Confidence            964433332221111000000          01234468899999999966666678899999998 55432  22222 


Q ss_pred             CccCeEEEEEcCCC-eEEE-EeCCCeEEEEecccccCcceeEEEEEecccc------cCeEEEEEecCCCEEE-EEcCCC
Q 046226          235 HSEPINALVVADDG-VLYS-ASDDATVRVWRRYFYSENQLHTLILTLTAKY------SPVKTLTLTLDDGLLY-GGCTDG  305 (434)
Q Consensus       235 ~~~~v~~~~~~~~~-~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~-~~~~dg  305 (434)
                      ....+..++|+|++ ++++ ...++.|.+|++.....  ............      ..+..++|+|+|++|+ +...++
T Consensus       185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~  262 (347)
T 3hfq_A          185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN  262 (347)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred             CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence            23367889999999 4544 56789999999872111  222222222221      3488899999999875 455689


Q ss_pred             eEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecC-CCcEEEEecc
Q 046226          306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSA-DSTSRVWARE  357 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~iwd~~  357 (434)
                      .|.+||+.... .......+..+...+..++|+  +++|++++. ++.|.+|+++
T Consensus       263 ~v~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          263 TLAVFAVTADG-HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEEECGGG-CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEECCCC-cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            99999986321 222223333444456667765  667777665 5899999554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=1.2e-18  Score=158.18  Aligned_cols=276  Identities=13%  Similarity=0.072  Sum_probs=174.1

Q ss_pred             EEEEEeCC--CeEEEecC--CCceeEe--ecc-CCCccEEEEEEeCC--EEEEEEcCCeEEEeecC-CCCCceeeEeeec
Q 046226          104 FIYTGSDS--NVIRIWKQ--PEFTECG--RLK-AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST-WDNGVKHVKLATI  173 (434)
Q Consensus       104 ~l~tg~~d--g~i~iwd~--~~~~~~~--~~~-~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~-~~~~~~~~~~~~~  173 (434)
                      .|++|+..  +.|.+|++  .+++...  ... .....+..++|+|+  .|++++.+ .|.+|++. .++.......   
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~---   79 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH---   79 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE---
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe---
Confidence            45666653  56877654  4555432  221 23346788999997  68888877 99999986 4322111110   


Q ss_pred             cCCCCceeEEEeccccccCcCCCeEEEEEecCCCE--EEEEe-------------cCCcEEEEEcC-CCeeEEEcc----
Q 046226          174 PKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT--LYSAS-------------LDKTIKVWRIR-DSKCIETIQ----  233 (434)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~-------------~dg~i~vwd~~-~~~~~~~~~----  233 (434)
                      +                 .+ +.+.+++|+|++++  ++++.             .+|.+.+|++. .++....+.    
T Consensus        80 ~-----------------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~  141 (365)
T 1jof_A           80 P-----------------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY  141 (365)
T ss_dssp             E-----------------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC
T ss_pred             e-----------------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe
Confidence            0                 01 12455889999994  45553             68999999997 465544333    


Q ss_pred             cCccCeEEEEEcCCC-eEEEEe-CCCeEEEEecccccCcceeEEEEEec--ccccCeEEEEEecCCCEEEEEcC-CCeEE
Q 046226          234 AHSEPINALVVADDG-VLYSAS-DDATVRVWRRYFYSENQLHTLILTLT--AKYSPVKTLTLTLDDGLLYGGCT-DGYIH  308 (434)
Q Consensus       234 ~~~~~v~~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~  308 (434)
                      .+...+.+++|+|+| +++++. .++.|++||+.. .+ .. .......  .+...+..++|+|+|+++++++. ++.|.
T Consensus       142 ~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-~g-~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~  218 (365)
T 1jof_A          142 QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SG-EV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRIC  218 (365)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TS-CE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-CC-CE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEE
Confidence            245678999999999 666655 468999999862 11 11 1222222  23567899999999999888765 78999


Q ss_pred             EEEcCccccccc----ccCcc----cCccc------ceEEEE-ee--CCEEEEecCC-C-----cEEEEeccCCCceeeE
Q 046226          309 YWHKGWFSAQLQ----YGGAL----QGHTH------AVMCLA-SV--ANYVISGSAD-S-----TSRVWAREQDGRHTML  365 (434)
Q Consensus       309 i~d~~~~~~~~~----~~~~~----~~~~~------~v~~~~-~~--~~~l~s~~~d-g-----~i~iwd~~~~~~~~~~  365 (434)
                      +|+++.......    ....+    .+|..      .+..++ ++  |++|+++..+ +     .|.+|++...+....+
T Consensus       219 v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~  298 (365)
T 1jof_A          219 EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ  298 (365)
T ss_dssp             EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE
T ss_pred             EEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe
Confidence            998753221111    11111    22332      466666 54  6777766543 2     8999999632222222


Q ss_pred             E-EeeccccceeEEEEee---cccCCCCCCcccEEEEeecC-CeEEEEecCCC
Q 046226          366 A-VLVGHRGPIRCAIAFL---GRFGEETEDEYCTICTGSLD-GVLKMWRVTRP  413 (434)
Q Consensus       366 ~-~~~~h~~~v~~~~~~~---~~~~~~~~~~~~~l~s~~~D-g~v~iw~~~~~  413 (434)
                      . ....+...+..++|+|   +         |++|++++.+ +.|.+|+++..
T Consensus       299 ~~~~~~~~~~~~~~a~sp~~~d---------g~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          299 LFLSPTPTSGGHSNAVSPCPWS---------DEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEECSSCCTTCCCEEECTTC---------TTEEEEECSSSCEEEEEEEETT
T ss_pred             eeeeecCCCCcccceecCCCcC---------CCEEEEEEcCCCeEEEEEEchh
Confidence            2 2334555677899999   6         8888888764 99999999765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.83  E-value=8.5e-19  Score=157.27  Aligned_cols=249  Identities=10%  Similarity=0.024  Sum_probs=170.2

Q ss_pred             eeeeEEEeecc-c-cEEEEEE--cCCEE-EEEeCCCeEEEecCCCceeEeeccCC-----CccEEEEEEeCC--EEEEEE
Q 046226           82 YRCISSVLKKD-G-QILCIAV--GNGFI-YTGSDSNVIRIWKQPEFTECGRLKAK-----TSMVVAMEVSHD--RVYAAY  149 (434)
Q Consensus        82 ~~~~~~~~~h~-~-~v~~~~~--~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~l~~~~~--~l~~~s  149 (434)
                      .+.+..+.... . .+.+++|  +++.+ +++..++.|.+||+.+++.+..+...     ...+..++|+|+  .++++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  100 (337)
T 1pby_B           21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE  100 (337)
T ss_dssp             TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred             CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence            34455554222 1 4788888  67655 55666889999999998887766532     225678999987  677665


Q ss_pred             ------------cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCc
Q 046226          150 ------------GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKT  217 (434)
Q Consensus       150 ------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  217 (434)
                                  .++.|.+||+.+++....+.                       ....+.+++|+|++++|+++  ++.
T Consensus       101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-----------------------~~~~~~~~~~s~dg~~l~~~--~~~  155 (337)
T 1pby_B          101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFE-----------------------APRQITMLAWARDGSKLYGL--GRD  155 (337)
T ss_dssp             EEEEECSSCEEECCCEEEEEETTTTEEEEEEE-----------------------CCSSCCCEEECTTSSCEEEE--SSS
T ss_pred             cccccccccccccCceEEEEECCCCcEEEEEe-----------------------CCCCcceeEECCCCCEEEEe--CCe
Confidence                        57999999997654443331                       23457788999999988888  688


Q ss_pred             EEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCC-----------------------eEEEEecccccCcce
Q 046226          218 IKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDA-----------------------TVRVWRRYFYSENQL  272 (434)
Q Consensus       218 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg-----------------------~i~iwd~~~~~~~~~  272 (434)
                      |.+||+.+++.+..+..+... ..+.|+|++ .++..+ .++                       .|.+||+...   ..
T Consensus       156 i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~  231 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG---EM  231 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC---CE
T ss_pred             EEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC---Cc
Confidence            999999999988777654311 123678888 443333 333                       4688888721   11


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCc
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADST  350 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  350 (434)
                      .  ......+...+..++|+|++++++++  ++.|.+||+...+.....    .. ...+.+++++  +++|++++.++.
T Consensus       232 ~--~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~----~~-~~~~~~~~~s~dg~~l~~~~~~~~  302 (337)
T 1pby_B          232 A--MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV----PL-PHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             E--EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE----EC-SSCCCEEEECTTSCEEEEESBSSE
T ss_pred             e--EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee----cC-CCceeeEEECCCCCEEEEEcCCCc
Confidence            1  23334455678899999999999988  799999998754332221    11 1234566665  678888888999


Q ss_pred             EEEEeccCCCceeeEEEeecc
Q 046226          351 SRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~h  371 (434)
                      |++||+.++   +.+..+..+
T Consensus       303 i~v~d~~~~---~~~~~~~~~  320 (337)
T 1pby_B          303 LAAYDAETL---EKKGQVDLP  320 (337)
T ss_dssp             EEEEETTTC---CEEEEEECG
T ss_pred             EEEEECcCC---cEEEEEEcC
Confidence            999999987   555555544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=2.6e-17  Score=148.84  Aligned_cols=271  Identities=10%  Similarity=0.030  Sum_probs=184.0

Q ss_pred             CCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------cCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226          110 DSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------GDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus       110 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      .|+.|.+||..+++.+..+..+..+  .++|+|+  .++++.          .++.|.+||..+.+.+..+.+....   
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~---  103 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR---  103 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---
Confidence            4789999999999998888877665  8999998  677775          3678999999876666555431100   


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--CCcEEEEEcCCCeeEEE-cccCccCeEEEEEcCCC--eEEE
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--DKTIKVWRIRDSKCIET-IQAHSEPINALVVADDG--VLYS  252 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~--~l~s  252 (434)
                                   ..+......++|+|+|++|+++..  ++.|.+||+.+++.+.. +...  ....+.+.|++  .+++
T Consensus       104 -------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~  168 (361)
T 2oiz_A          104 -------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMT  168 (361)
T ss_dssp             -------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEE
T ss_pred             -------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEE
Confidence                         013345678999999999998874  57999999999998887 6532  22335667766  7888


Q ss_pred             EeCCCeEEEEecccccCcceeEEEE---EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc----
Q 046226          253 ASDDATVRVWRRYFYSENQLHTLIL---TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL----  325 (434)
Q Consensus       253 ~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----  325 (434)
                      .+.||.+.+|++...  ........   .+.....+ ..+.+++++..++..+.++.|.++|+............+    
T Consensus       169 ~~~dg~~~~v~~~~~--g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~  245 (361)
T 2oiz_A          169 ICGDGGLLTINLGED--GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE  245 (361)
T ss_dssp             EETTSSEEEEEECTT--SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred             ECCCCcEEEEEECCC--CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence            899999999987511  11111111   11111222 233446777777778889999999986432111000000    


Q ss_pred             ------cCcccceEEEEeeCCEEEEecC-----------CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCC
Q 046226          326 ------QGHTHAVMCLASVANYVISGSA-----------DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       326 ------~~~~~~v~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  388 (434)
                            .........+..+++.++++..           ++.|.+||+.+.   +.+..+..+.  +.+++|+|+     
T Consensus       246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spd-----  315 (361)
T 2oiz_A          246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQ-----  315 (361)
T ss_dssp             HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETT-----
T ss_pred             ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCC-----
Confidence                  0011112345556666555432           358999999987   7888888877  899999999     


Q ss_pred             CCCcccEEEEeecCCeEEEEecCCC--Ccccc
Q 046226          389 TEDEYCTICTGSLDGVLKMWRVTRP--KSSCG  418 (434)
Q Consensus       389 ~~~~~~~l~s~~~Dg~v~iw~~~~~--~~~~~  418 (434)
                          |++|++++. +.|.+||..++  +.+..
T Consensus       316 ----g~~l~v~n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          316 ----RNLMLTLDG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             ----TTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred             ----CCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence                888988886 99999999998  65443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=3.5e-19  Score=176.71  Aligned_cols=277  Identities=11%  Similarity=0.008  Sum_probs=176.6

Q ss_pred             EEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCc---cEEEEEEeCC--EEEEEEc---------CCeEEEeecC
Q 046226           97 CIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS---MVVAMEVSHD--RVYAAYG---------DGKIRVWRST  160 (434)
Q Consensus        97 ~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~l~~~~~--~l~~~s~---------dg~i~vwd~~  160 (434)
                      .++|  +++++++ +.|+.|++||+.+++....+..|..   .+.+++|+||  .|+.++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            4566  6655554 4699999999999887776665543   3899999998  6777765         7899999997


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc-ccCccCe
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI-QAHSEPI  239 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v  239 (434)
                      +++.+...                       .....+..++|+|||+.|+.+. ++.|++||+.+++..... .++...|
T Consensus        99 ~g~~~~~~-----------------------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v  154 (719)
T 1z68_A           99 NGEFVRGN-----------------------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKI  154 (719)
T ss_dssp             TTEECCSS-----------------------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTE
T ss_pred             CCccccce-----------------------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCe
Confidence            66431111                       0124578899999999999986 789999999988765433 2222222


Q ss_pred             -----------------EEEEEcCCC-eEEEEeCCC----------------------------------eEEEEecccc
Q 046226          240 -----------------NALVVADDG-VLYSASDDA----------------------------------TVRVWRRYFY  267 (434)
Q Consensus       240 -----------------~~~~~~~~~-~l~s~~~dg----------------------------------~i~iwd~~~~  267 (434)
                                       .+++|+||| .|++++.|.                                  .|++||+...
T Consensus       155 ~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~  234 (719)
T 1z68_A          155 FNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP  234 (719)
T ss_dssp             EESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred             EcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence                             489999999 788776542                                  7888887621


Q ss_pred             cCcceeEEE--EEecccccCeEEEEEecCCCEEEEEcCC----CeEEEEE----cCcccccccccCcccCcccceE----
Q 046226          268 SENQLHTLI--LTLTAKYSPVKTLTLTLDDGLLYGGCTD----GYIHYWH----KGWFSAQLQYGGALQGHTHAVM----  333 (434)
Q Consensus       268 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~~~~~~~~v~----  333 (434)
                      .........  ..+..+...+..++|+||++++++....    ..|.+||    +.+............+|...+.    
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  314 (719)
T 1z68_A          235 AYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFV  314 (719)
T ss_dssp             HHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSC
T ss_pred             CccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccC
Confidence            110000000  1123466778999999998777764322    3488888    6543322111000024444433    


Q ss_pred             -EEEe--eCCEEE--EecCCC--cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec-----
Q 046226          334 -CLAS--VANYVI--SGSADS--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL-----  401 (434)
Q Consensus       334 -~~~~--~~~~l~--s~~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-----  401 (434)
                       .+.|  +|+.++  +...+|  .|.+||+.++.    ...+..+...+..+.++ +         ++.|+..+.     
T Consensus       315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d---------~~~i~~~~~~~~~~  380 (719)
T 1z68_A          315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-T---------QDSLFYSSNEFEEY  380 (719)
T ss_dssp             CCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-C---------SSEEEEEESCGGGC
T ss_pred             CccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-e---------CCEEEEEEecCCCC
Confidence             4444  566433  454555  56677776652    34455566667777777 5         555555444     


Q ss_pred             CCeEEEEecCC
Q 046226          402 DGVLKMWRVTR  412 (434)
Q Consensus       402 Dg~v~iw~~~~  412 (434)
                      ++.+++|.+..
T Consensus       381 ~~~~~l~~~~~  391 (719)
T 1z68_A          381 PGRRNIYRISI  391 (719)
T ss_dssp             TTCBEEEEEEC
T ss_pred             CceEEEEEEeC
Confidence            48899998864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=1.3e-17  Score=152.82  Aligned_cols=286  Identities=8%  Similarity=-0.035  Sum_probs=185.8

Q ss_pred             eeeEEEeeccccEEE-----EEE--cCCEEEEEeC-CC--eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc
Q 046226           83 RCISSVLKKDGQILC-----IAV--GNGFIYTGSD-SN--VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG  150 (434)
Q Consensus        83 ~~~~~~~~h~~~v~~-----~~~--~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~  150 (434)
                      ..+..+..|.+....     .+|  +|++|+.++. +|  .|.+||+.+++.......+...+..+.|+|+  .|+.++.
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~  100 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD  100 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred             cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence            345556666665655     667  8998888887 66  4888999998887777777666667789998  7888888


Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE--EEecCCCEEEEE----------------
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI--AINVSDDTLYSA----------------  212 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~----------------  212 (434)
                      ++.|++||+.+++......                      .+...+...  .+++++.+++..                
T Consensus       101 ~~~l~~~d~~~g~~~~~~~----------------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~  158 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQ----------------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKF  158 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEE----------------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred             CCeEEEEECCCCcceeeee----------------------chhhcccccceeECCCCCeeccccccCcccccccccchh
Confidence            9999999998765443332                      133333333  347888888742                


Q ss_pred             ------ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcC-CC-eEEEEeCC------CeEEEEecccccCcceeEEEEE
Q 046226          213 ------SLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD-DG-VLYSASDD------ATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       213 ------~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~  278 (434)
                            ..++.|.+||+.+++.. .+..+...+..+.|+| ++ .|+.+..+      ..|.++|+.   ....    ..
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~---~~~~----~~  230 (388)
T 3pe7_A          159 HEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED---GTNM----RK  230 (388)
T ss_dssp             HHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT---SCCC----EE
T ss_pred             hhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC---CCce----EE
Confidence                  23468999999988654 4445667789999999 88 66665543      367777765   1111    11


Q ss_pred             ecccc--cCeEEEEEecCCCEEEEEcC-CC----eEEEEEcCcccccccccCcccCcccc-----eEEEEeeCCEEEEe-
Q 046226          279 LTAKY--SPVKTLTLTLDDGLLYGGCT-DG----YIHYWHKGWFSAQLQYGGALQGHTHA-----VMCLASVANYVISG-  345 (434)
Q Consensus       279 ~~~~~--~~v~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~l~s~-  345 (434)
                      +..+.  ..+...+|+|||+.|+..+. ++    .|++||+........  ..+.++...     -..++.+|+.|+.. 
T Consensus       231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~~~~~~~spdg~~l~~~~  308 (388)
T 3pe7_A          231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL--TSMPACSHLMSNYDGSLMVGDGSDAPVDV  308 (388)
T ss_dssp             SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE--EEECCEEEEEECTTSSEEEEEECCC----
T ss_pred             eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE--EcCCCceeeeecCCCCeEccCCCcceeEe
Confidence            22222  24778899999997765433 22    399999875543211  112221110     01466777766643 


Q ss_pred             --------cCCCcEEEEeccCCCceeeEEEeecccc-----------ceeEEEEeecccCCCCCCcccEEEEee-cCCeE
Q 046226          346 --------SADSTSRVWAREQDGRHTMLAVLVGHRG-----------PIRCAIAFLGRFGEETEDEYCTICTGS-LDGVL  405 (434)
Q Consensus       346 --------~~dg~i~iwd~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v  405 (434)
                              ..+..|++||+.++   . +..+..|..           .+..++|+|+         |+.|+..+ .+|..
T Consensus       309 ~~~~~~~~~~~~~i~~~d~~~~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spD---------g~~l~~~s~~~g~~  375 (388)
T 3pe7_A          309 QDDSGYKIENDPFLYVFNMKNG---T-QHRVARHDTSWKVFEGDRQVTHPHPSFTPD---------DKQILFTSDVHGKP  375 (388)
T ss_dssp             --------CCCCEEEEEETTTT---E-EEEEEECCCCCCCBTTBSSTTCCCCEECTT---------SSEEEEEECTTSSC
T ss_pred             eeccccccCCCCEEEEEeccCC---c-eEEeccccCcccccccccccCCCCccCCCC---------CCEEEEEecCCCce
Confidence                    45678999999886   2 234445554           5778899998         77666554 57888


Q ss_pred             EEEecCCC
Q 046226          406 KMWRVTRP  413 (434)
Q Consensus       406 ~iw~~~~~  413 (434)
                      .||.++-.
T Consensus       376 ~l~~~~l~  383 (388)
T 3pe7_A          376 ALYLATLP  383 (388)
T ss_dssp             EEEEEECC
T ss_pred             eEEEEECC
Confidence            88876543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=5e-18  Score=168.47  Aligned_cols=322  Identities=10%  Similarity=-0.009  Sum_probs=192.8

Q ss_pred             CCCCCCCCccCCCCCCCcccce-----eeeEEEeeccc---cEEEEEE--cCCEEEEEeC---------CCeEEEecCCC
Q 046226           61 PRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDG---QILCIAV--GNGFIYTGSD---------SNVIRIWKQPE  121 (434)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~---~v~~~~~--~~~~l~tg~~---------dg~i~iwd~~~  121 (434)
                      +.+.+++..+++. .+.++..|     ++...+.+|..   .|.+++|  +|++|++++.         ++.|++||+.+
T Consensus        21 ~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           21 PNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             CEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             cEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            3444555444333 34444443     34444444544   3889999  9999999876         78999999999


Q ss_pred             ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC----
Q 046226          122 FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG----  195 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  195 (434)
                      ++.+.... -...+..++|+||  .|+.+ .++.|++||+.+++......      .+....       .+.++..    
T Consensus       100 g~~~~~~~-l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~------~~~~~~-------v~~g~~~~v~~  164 (719)
T 1z68_A          100 GEFVRGNE-LPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITF------NGRENK-------IFNGIPDWVYE  164 (719)
T ss_dssp             TEECCSSC-CCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCC------CCBTTT-------EEESSCCHHHH
T ss_pred             Ccccccee-cCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEec------CCCcCC-------eEcccccceee
Confidence            87631111 1246888999998  56665 48899999998765432110      000000       0012222    


Q ss_pred             -----CeEEEEEecCCCEEEEEecCC----------------------------------cEEEEEcCCCeeE-------
Q 046226          196 -----PITSIAINVSDDTLYSASLDK----------------------------------TIKVWRIRDSKCI-------  229 (434)
Q Consensus       196 -----~v~~~~~~~~~~~l~s~~~dg----------------------------------~i~vwd~~~~~~~-------  229 (434)
                           ...+++|+|||++|++++.|.                                  .|++||+.+++..       
T Consensus       165 ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~  244 (719)
T 1z68_A          165 EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV  244 (719)
T ss_dssp             HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCC
T ss_pred             eecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccC
Confidence                 225899999999999987652                                  7889999887653       


Q ss_pred             -EEcccCccCeEEEEEcCCC-eEEEEeCC----CeEEEEe----cccccCcceeEEEEEecccccCeE-----EEEEecC
Q 046226          230 -ETIQAHSEPINALVVADDG-VLYSASDD----ATVRVWR----RYFYSENQLHTLILTLTAKYSPVK-----TLTLTLD  294 (434)
Q Consensus       230 -~~~~~~~~~v~~~~~~~~~-~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~  294 (434)
                       ..+..|...+..++|+||+ ++++....    ..|.+||    +..........  .....+...+.     .+.|+|+
T Consensus       245 ~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~spd  322 (719)
T 1z68_A          245 PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE--HIEESRTGWAGGFFVSTPVFSYD  322 (719)
T ss_dssp             CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE--EEEECSSSCSSSSSCCCCEECTT
T ss_pred             CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe--cccccCCceEccccCCccEECCC
Confidence             1234578889999999999 55553322    2488888    54111111100  00024445555     7899999


Q ss_pred             CCEEEE--EcCCC--eEEEEEcCcccccccccCcccCcccceEEEE-eeCCEEEEecC-----CCcEEEEeccCC-Cc--
Q 046226          295 DGLLYG--GCTDG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLA-SVANYVISGSA-----DSTSRVWAREQD-GR--  361 (434)
Q Consensus       295 ~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~s~~~-----dg~i~iwd~~~~-~~--  361 (434)
                      |+.|+.  ...+|  .|.+||+....  ..   .+..+...+..+. ++++.|+..+.     ++.+++|.+... +.  
T Consensus       323 g~~l~~~~~~~~g~~~l~~~~~~~~~--~~---~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~  397 (719)
T 1z68_A          323 AISYYKIFSDKDGYKHIHYIKDTVEN--AI---QITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS  397 (719)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSCSTT--CE---ECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCC
T ss_pred             CCeEEEEEEccCCceEEEEEECCCCc--eE---ecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCC
Confidence            996554  44555  46666654332  11   2223333344332 26666555554     488999988652 11  


Q ss_pred             eeeEEE-eeccccceeEEEEeecccCCCCCCcccEEE-EeecC--CeEEEEecCCCC
Q 046226          362 HTMLAV-LVGHRGPIRCAIAFLGRFGEETEDEYCTIC-TGSLD--GVLKMWRVTRPK  414 (434)
Q Consensus       362 ~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~~D--g~v~iw~~~~~~  414 (434)
                      ..++.. +.+|...+..+.|+|+         +++++ +++.+  ..+.+|++.+++
T Consensus       398 ~~~l~~~~~~~~~~~~~~~~s~d---------g~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          398 KKCVTCHLRKERCQYYTASFSDY---------AKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             EEESSTTTTTTTBCBEEEEECGG---------GSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             ceeccCccCCCCCceEEEEECCC---------CCEEEEEcCCCCCCeEEEEECCCCC
Confidence            112111 2236677888999998         65555 44444  578899987776

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=1e-17  Score=162.01  Aligned_cols=226  Identities=7%  Similarity=0.001  Sum_probs=157.8

Q ss_pred             CccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC-CCeEEEEEecCCC
Q 046226          132 TSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM-GPITSIAINVSDD  207 (434)
Q Consensus       132 ~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  207 (434)
                      ..+|.+++|+||  .|+.++. ||+++||++..++. ..+                      ..|. ..+..++|+|| +
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~l----------------------t~~~~~~~~~~~~spd-~   76 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKL----------------------NREPINSVLDPHYGVG-R   76 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EEC----------------------CSSCCSEECEECTTCS-E
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eee----------------------ecccccccccccCCCC-e
Confidence            457999999998  7887776 99999999744322 111                      1344 58999999999 7


Q ss_pred             EEEEEec---CCcEEEEEcCC---CeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226          208 TLYSASL---DKTIKVWRIRD---SKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       208 ~l~s~~~---dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      .+++++.   +....+|.+..   +... .+... ..+...+|+|++  .+++.+.++.+.+||+..   .... .+.  
T Consensus        77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~---g~~~-~l~--  148 (582)
T 3o4h_A           77 VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDG---GGLR-ELA--  148 (582)
T ss_dssp             EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEET---TEEE-EEE--
T ss_pred             EEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccC---CcEE-Eee--
Confidence            7777764   44456655432   3322 33322 234456777776  444555555566999861   1111 111  


Q ss_pred             cccccCeEEEEEecCCCEEEEEcCC----CeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC--cE
Q 046226          280 TAKYSPVKTLTLTLDDGLLYGGCTD----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS--TS  351 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~i  351 (434)
                       .+..  .+++|+|||++|++++.+    +.|++||+.+....     .+..|...+..++|+  |++|+++..++  .|
T Consensus       149 -~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i  220 (582)
T 3o4h_A          149 -RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEGSFSSASISPGMKVTAGLETAREARL  220 (582)
T ss_dssp             -EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSCEEEEEEECTTSCEEEEEECSSCEEE
T ss_pred             -cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCCccccceECCCCCEEEEccCCCeeEE
Confidence             1212  789999999999988776    78999998654332     344677777788775  67888888888  89


Q ss_pred             EEEeccCCCceeeEEEeeccccceeEEE--------EeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          352 RVWAREQDGRHTMLAVLVGHRGPIRCAI--------AFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                      ++||+.++   +.. .+.+|...+..++        |+|+         |.++++++.||.+++|++
T Consensus       221 ~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~spd---------g~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          221 VTVDPRDG---SVE-DLELPSKDFSSYRPTAITWLGYLPD---------GRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEEEECTT---------SCEEEEEEETTEEEEEET
T ss_pred             EEEcCCCC---cEE-EccCCCcChhhhhhccccceeEcCC---------CcEEEEEEcCCcEEEEEE
Confidence            99999887   344 6677887777777        9998         889999999999999999

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=5.7e-16  Score=152.19  Aligned_cols=291  Identities=7%  Similarity=-0.008  Sum_probs=179.9

Q ss_pred             EeeccccEEEEEEcCCEE--EEE--eCCCeEEEecCCCceeEeeccCCCccEE---------EEEEe--CC--E-EEEEE
Q 046226           88 VLKKDGQILCIAVGNGFI--YTG--SDSNVIRIWKQPEFTECGRLKAKTSMVV---------AMEVS--HD--R-VYAAY  149 (434)
Q Consensus        88 ~~~h~~~v~~~~~~~~~l--~tg--~~dg~i~iwd~~~~~~~~~~~~~~~~v~---------~l~~~--~~--~-l~~~s  149 (434)
                      +.+|...|..++++++.+  +..  +.++...||....+.....+..+...+.         ...|+  ||  . |+.++
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~   98 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH   98 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence            456888999999955433  333  4478899998654555666766666655         56666  65  5 55544


Q ss_pred             c-CCeEEEeecC--CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC----------C
Q 046226          150 G-DGKIRVWRST--WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD----------K  216 (434)
Q Consensus       150 ~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----------g  216 (434)
                      . +..|.+|++.  .......+.  ..+               ...|...+.+++|+|||+.|+.++.+          .
T Consensus        99 ~~~~~l~~~~~~~~g~~~~~~l~--~~~---------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~  161 (662)
T 3azo_A           99 FGDQRLYAFEPDAPGGAVPRPLT--PVS---------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR  161 (662)
T ss_dssp             TTTCCEEEECTTSTTCCCCEECS--CCC---------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred             CCCCeEEEEcCCCCCCCCCEecc--CCc---------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence            3 4566666654  102222111  000               00156678899999999999988876          5


Q ss_pred             cEEEEEcCC------CeeEEEcc-cCccCeEEEEEcCCC-eEEEEeCC--------CeEEEEecccccCcceeEEEEEec
Q 046226          217 TIKVWRIRD------SKCIETIQ-AHSEPINALVVADDG-VLYSASDD--------ATVRVWRRYFYSENQLHTLILTLT  280 (434)
Q Consensus       217 ~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~-~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~  280 (434)
                      .|++||+.+      ++. ..+. .+...+..++|+||| .|+.++.+        ..|++||+..  ............
T Consensus       162 ~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~--~g~~~~~~~l~~  238 (662)
T 3azo_A          162 FLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE--DGRFADTRTLLG  238 (662)
T ss_dssp             EEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT--TSCEEEEEEEEE
T ss_pred             EEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC--CCcccccEEeCC
Confidence            899999987      554 4555 556778889999999 77766644        3799999861  111112222233


Q ss_pred             ccccCeEEEEEecCCCEEEEEcCCC--eEEEEEcCcccccccccCcccCcccc--------eEEEEe--eCCEEEEecCC
Q 046226          281 AKYSPVKTLTLTLDDGLLYGGCTDG--YIHYWHKGWFSAQLQYGGALQGHTHA--------VMCLAS--VANYVISGSAD  348 (434)
Q Consensus       281 ~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~--------v~~~~~--~~~~l~s~~~d  348 (434)
                      .+...+..+.|+|||++++++..++  .|.+||+...... .+   ...+...        +..+++  ++.+++++.. 
T Consensus       239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l---~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-  313 (662)
T 3azo_A          239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QL---CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-  313 (662)
T ss_dssp             ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ES---SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred             CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ec---ccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence            4467889999999999888888888  5666665332211 11   1111111        334555  4678888888 


Q ss_pred             CcEEEEeccCCCceeeEEEeeccccceeEE-EEeecccCCCCCCcccEEEEeecCCe--EEEEecCCCC
Q 046226          349 STSRVWAREQDGRHTMLAVLVGHRGPIRCA-IAFLGRFGEETEDEYCTICTGSLDGV--LKMWRVTRPK  414 (434)
Q Consensus       349 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~l~s~~~Dg~--v~iw~~~~~~  414 (434)
                      +.++||.+....  ..+..+..|.+.+..+ ++..+         .-++++++.+..  |.+|++.+++
T Consensus       314 ~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~s~~~~---------~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          314 GAAVLGILDPES--GELVDAAGPWTEWAATLTVSGT---------RAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             SSCEEEEEETTT--TEEEECCSSCCEEEEEEEEETT---------EEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CccEEEEEECCC--CcEEEecCCCCeEEEEEecCCC---------EEEEEEcCCCCCCEEEEEECCCCc
Confidence            999999544221  2356677787777766 44332         334555565654  4455555554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=5.6e-15  Score=129.21  Aligned_cols=245  Identities=9%  Similarity=0.086  Sum_probs=163.2

Q ss_pred             CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe-cCC
Q 046226          130 AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN-VSD  206 (434)
Q Consensus       130 ~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~  206 (434)
                      ++-....+++++++  .+++...++.|.+||.. ++....+...                ....++...+..+++. +++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~----------------~~~~~~~~~p~~i~~~~~~g   89 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGEC----------------GKRDSQLLYPNRVAVVRNSG   89 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCB----------------SSSTTCBSSEEEEEEETTTT
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEeccc----------------CCCcccccCceEEEEEcCCC
Confidence            44567899999986  44444678999999976 3322222100                0001355678999995 566


Q ss_pred             CEEEEEec-CCcEEEEEcCCCeeEEEccc-CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226          207 DTLYSASL-DKTIKVWRIRDSKCIETIQA-HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY  283 (434)
Q Consensus       207 ~~l~s~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  283 (434)
                      .++++... ++.|.+|| .+++.+..+.. +...+.++++.+++ ++++...++.|.+||..   .. .. .......+.
T Consensus        90 ~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~-~~-~~~~~~~~~  163 (286)
T 1q7f_A           90 DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN---GN-VL-HKFGCSKHL  163 (286)
T ss_dssp             EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT---SC-EE-EEEECTTTC
T ss_pred             eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC---CC-EE-EEeCCCCcc
Confidence            65555533 78999999 56777666643 34578999999999 66666778999999864   11 11 111112344


Q ss_pred             cCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC-cEEEEeccCCC
Q 046226          284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS-TSRVWAREQDG  360 (434)
Q Consensus       284 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg-~i~iwd~~~~~  360 (434)
                      ..+..++++++++++++...++.|++||..... ...+  ...++...+..++++  |+++++...++ .|++||.. + 
T Consensus       164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~--~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g-  238 (286)
T 1q7f_A          164 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQI--GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G-  238 (286)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-EEEE--SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S-
T ss_pred             CCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE-EEEE--ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C-
Confidence            568999999999988888889999999974321 1111  112223456777775  66777777775 99999964 3 


Q ss_pred             ceeeEEEeecccc--ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          361 RHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       361 ~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                        ..+..+..+..  .+.++++.|+         |+++++ +.|+.|++|++....
T Consensus       239 --~~~~~~~~~~~~~~~~~i~~~~~---------g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          239 --QLISALESKVKHAQCFDVALMDD---------GSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             --CEEEEEEESSCCSCEEEEEEETT---------TEEEEE-ETTTEEEEEECSCCC
T ss_pred             --CEEEEEcccCCCCcceeEEECCC---------CcEEEE-CCCCeEEEEEccccc
Confidence              34445544433  4778999998         887777 679999999987654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=8.6e-16  Score=138.35  Aligned_cols=261  Identities=11%  Similarity=0.002  Sum_probs=167.8

Q ss_pred             CCCCCCccCCCCCCCcccc-----eeeeEEEeecc-ccEEEEEE--cCCEE-EEEeCCCeEEEecCCCceeEeeccCCC-
Q 046226           63 HPFNPTAAAGSSSPETSSS-----YRCISSVLKKD-GQILCIAV--GNGFI-YTGSDSNVIRIWKQPEFTECGRLKAKT-  132 (434)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~h~-~~v~~~~~--~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~-  132 (434)
                      +..+...+++.+.+..+..     .+.+..+..+. ..+..++|  +++++ +++..++.|.+||+.+++.+..+..+. 
T Consensus         7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~   86 (349)
T 1jmx_B            7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   86 (349)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence            3444555555555555433     34455555443 25677888  77755 455678999999999998887765432 


Q ss_pred             -----ccEEEEEEeCC--EEEEEEcC------------CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226          133 -----SMVVAMEVSHD--RVYAAYGD------------GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH  193 (434)
Q Consensus       133 -----~~v~~l~~~~~--~l~~~s~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
                           ..+..++|+|+  .+++++.+            +.|.+||+.+++........                    .+
T Consensus        87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------------~~  146 (349)
T 1jmx_B           87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--------------------PM  146 (349)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--------------------EC
T ss_pred             cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--------------------cC
Confidence                 33788999997  77777755            99999999764332222111                    24


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc------------------------CeEEEEEcCCC-
Q 046226          194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE------------------------PINALVVADDG-  248 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~-  248 (434)
                      ...+.+++|+|+++ +++++  +.|.+||+.+++.+..+..+..                        ....+++.+++ 
T Consensus       147 ~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  223 (349)
T 1jmx_B          147 PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK  223 (349)
T ss_dssp             CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred             CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence            44688999999999 66654  3499999999988777654320                        23345555433 


Q ss_pred             -----------eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCccc
Q 046226          249 -----------VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       249 -----------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                                 ++.....++.+++|++.               .....+..++++| ++++++++  ++.|.+||+...+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~  286 (349)
T 1jmx_B          224 QDPATADLLYGYLSVDLKTGKTHTQEFA---------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK  286 (349)
T ss_dssp             ---CCCEEEEEEEEEETTTCCEEEEEEE---------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred             CCccccccceeEEEEeccCCcEEecccc---------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence                       11122333444444432               2445788999999 99999988  8999999987544


Q ss_pred             ccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226          317 AQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       317 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                      ......   .+  ..+.+++++  +++|++++.++.|++||+.++   +.+..+...
T Consensus       287 ~~~~~~---~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~---~~~~~~~~~  335 (349)
T 1jmx_B          287 LIKAAN---LD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL---EKVKNIKLP  335 (349)
T ss_dssp             EEEEEE---CS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTT---EEEEEEECS
T ss_pred             EEEEEc---CC--CCccceEECCCCCEEEEecCCCeEEEEecccc---ceeeeeecC
Confidence            322221   12  234456664  667777888999999999887   555555443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.74  E-value=1.2e-15  Score=138.42  Aligned_cols=247  Identities=11%  Similarity=0.071  Sum_probs=157.9

Q ss_pred             cccEEEEEE--cCCEEEEEeCCCeEEEecCC-CceeEeecc--CCCccEEEEEEeCC-E---EEEEE-------------
Q 046226           92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQP-EFTECGRLK--AKTSMVVAMEVSHD-R---VYAAY-------------  149 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~--~~~~~v~~l~~~~~-~---l~~~s-------------  149 (434)
                      ...+..++|  ++++|++++.+ .|.+|++. +++......  .+ +...+++|+|+ .   ++++.             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            346778888  88999999888 99999987 776543322  11 22455788887 3   23332             


Q ss_pred             cCCeEEEeecCCC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcC-CC
Q 046226          150 GDGKIRVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIR-DS  226 (434)
Q Consensus       150 ~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~-~~  226 (434)
                      .+|.+.+|++... +....+....                  ..+...+.+++|+|+|++|+++.. ++.|++||+. ++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~------------------~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g  178 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYE------------------YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG  178 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEE------------------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred             CCceEEEEccCCCCcCcceEeeEE------------------eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC
Confidence            6899999998743 2222221100                  024567899999999998887764 6799999998 67


Q ss_pred             eeE--EEcc--cCccCeEEEEEcCCC-eEEEEe-CCCeEEEEecccccCccee--EEEEEecc----ccc------CeEE
Q 046226          227 KCI--ETIQ--AHSEPINALVVADDG-VLYSAS-DDATVRVWRRYFYSENQLH--TLILTLTA----KYS------PVKT  288 (434)
Q Consensus       227 ~~~--~~~~--~~~~~v~~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~--~~~~~~~~----~~~------~v~~  288 (434)
                      +..  ..+.  .|...+..++|+|++ ++++++ .++.|.+|++....+....  .....+..    +..      .+..
T Consensus       179 ~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  258 (365)
T 1jof_A          179 EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD  258 (365)
T ss_dssp             CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred             CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence            643  3333  235678999999999 666665 4789999987521121111  11222221    121      4788


Q ss_pred             EE-EecCCCEEEEEcCCC------eEEEEEcCcccccccccC-cccCcc--cceEEEEe---eCCEEEEecCC-CcEEEE
Q 046226          289 LT-LTLDDGLLYGGCTDG------YIHYWHKGWFSAQLQYGG-ALQGHT--HAVMCLAS---VANYVISGSAD-STSRVW  354 (434)
Q Consensus       289 ~~-~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~-~~~~~~--~~v~~~~~---~~~~l~s~~~d-g~i~iw  354 (434)
                      ++ |+|||++|+++..+.      .|.+|++... ....... ....+.  ..-.+++.   +|++|++++.+ +.|.+|
T Consensus       259 i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~-g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~  337 (365)
T 1jof_A          259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             EEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC-CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence            99 999999988776432      8999998631 1111100 011111  12234556   68898888764 899999


Q ss_pred             eccCC
Q 046226          355 AREQD  359 (434)
Q Consensus       355 d~~~~  359 (434)
                      ++...
T Consensus       338 ~~~~~  342 (365)
T 1jof_A          338 RWKDE  342 (365)
T ss_dssp             EEETT
T ss_pred             EEchh
Confidence            99865

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=1.2e-16  Score=158.68  Aligned_cols=273  Identities=11%  Similarity=0.072  Sum_probs=176.9

Q ss_pred             cEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCcc-----EEEEEEeCC--EEEEEEcC---------CeEE
Q 046226           94 QILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSM-----VVAMEVSHD--RVYAAYGD---------GKIR  155 (434)
Q Consensus        94 ~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~l~~~~~--~l~~~s~d---------g~i~  155 (434)
                      ...+++|  ++++|+++  |+.|++||+.+++....+..|...     ...+.|+||  .|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            3557888  78888886  899999999999887777776542     244788998  67777765         6677


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc-cc
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI-QA  234 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~  234 (434)
                      +||+.+++....                       ..|...+...+|+|||+.|+.+. ++.|++||+.+++..+.. .+
T Consensus        96 ~~d~~~~~~~~l-----------------------~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g  151 (740)
T 4a5s_A           96 IYDLNKRQLITE-----------------------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG  151 (740)
T ss_dssp             EEETTTTEECCS-----------------------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC
T ss_pred             EEECCCCcEEEc-----------------------ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCC
Confidence            999987643221                       14677899999999999999885 789999999888754422 22


Q ss_pred             CccCe-----------------EEEEEcCCC-eEEEEeCC-CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC
Q 046226          235 HSEPI-----------------NALVVADDG-VLYSASDD-ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD  295 (434)
Q Consensus       235 ~~~~v-----------------~~~~~~~~~-~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  295 (434)
                      +...+                 ..+.|+||| .|+.++.| +.+.+|++.......         .+...+..+.+.+.|
T Consensus       152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~---------~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES---------LQYPKTVRVPYPKAG  222 (740)
T ss_dssp             BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT---------CSSCEEEEEECCBTT
T ss_pred             CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC---------CCCCcceeecCCCCc
Confidence            22222                 358999999 77777654 448888765222111         233445666676665


Q ss_pred             CEEEEEcCCCeEEEEEcCc---cc--ccccccC--cccCcccceEEEEee--CCEEEEe----cCCCcEEEEeccCCCc-
Q 046226          296 GLLYGGCTDGYIHYWHKGW---FS--AQLQYGG--ALQGHTHAVMCLASV--ANYVISG----SADSTSRVWAREQDGR-  361 (434)
Q Consensus       296 ~~l~~~~~dg~i~i~d~~~---~~--~~~~~~~--~~~~~~~~v~~~~~~--~~~l~s~----~~dg~i~iwd~~~~~~-  361 (434)
                      ..    .....|++||+..   ..  ....+..  .+.+|...+..++|+  |+.++..    ..+..|++||+.++.. 
T Consensus       223 ~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~  298 (740)
T 4a5s_A          223 AV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR  298 (740)
T ss_dssp             SC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred             Cc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence            42    1233689999876   42  1111110  111366778777775  5544443    2344799999998741 


Q ss_pred             --eeeEEEe--ecccccee-----EEEEeecccCCCCCCcccEEE-Eee-cCC--eEEEEecCCCC
Q 046226          362 --HTMLAVL--VGHRGPIR-----CAIAFLGRFGEETEDEYCTIC-TGS-LDG--VLKMWRVTRPK  414 (434)
Q Consensus       362 --~~~~~~~--~~h~~~v~-----~~~~~~~~~~~~~~~~~~~l~-s~~-~Dg--~v~iw~~~~~~  414 (434)
                        ...+..+  .+|...|.     ..+|+|+         |+.|+ ..+ .+|  .|++|++..++
T Consensus       299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD---------G~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTLD---------GNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             EEECGGGCEEEECSSSCSSSSSCCCCEECTT---------SSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             cceeEEEEeeeccCCceEccCcCCCceEcCC---------CCEEEEEEEcCCCceEEEEEECCCCc
Confidence              0011111  45666554     6788988         77766 555 344  58888887654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=1.4e-14  Score=126.63  Aligned_cols=234  Identities=10%  Similarity=0.100  Sum_probs=161.1

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeecc------CCCccEEEEEEe-CC-EEEEEEc--CCeEEEee
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLK------AKTSMVVAMEVS-HD-RVYAAYG--DGKIRVWR  158 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~l~~~-~~-~l~~~s~--dg~i~vwd  158 (434)
                      |-..+.++++  +++++++...++.|.+||.. ++.+..+.      .+...+..+++. ++ .++++..  ++.|.+||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            4457889999  67888888889999999976 55555543      244578999995 44 6666663  89999999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc--cCc
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ--AHS  236 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~  236 (434)
                      . .++.+..+.                     ..+...+.+++++++++++++...++.|.+||.. ++.+..+.  .+.
T Consensus       107 ~-~g~~~~~~~---------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~  163 (286)
T 1q7f_A          107 Q-YGQFVRKFG---------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHL  163 (286)
T ss_dssp             T-TSCEEEEEC---------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTC
T ss_pred             C-CCcEEEEec---------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCcc
Confidence            3 333322221                     0244568999999999988877778999999964 56555554  344


Q ss_pred             cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec--ccccCeEEEEEecCCCEEEEEcCCC-eEEEEEc
Q 046226          237 EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT--AKYSPVKTLTLTLDDGLLYGGCTDG-YIHYWHK  312 (434)
Q Consensus       237 ~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~  312 (434)
                      ..+..+++++++ ++++...++.|++||..   .    .....+.  ++...+..++++++|+++++...++ .|.+||.
T Consensus       164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~---g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          164 EFPNGVVVNDKQEIFISDNRAHCVKVFNYE---G----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETT---C----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             CCcEEEEECCCCCEEEEECCCCEEEEEcCC---C----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            578999999999 66666778999999965   1    1222232  2235788999999999888887776 9999995


Q ss_pred             CcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          313 GWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ... ....+  ........+.+++++  |+++++ +.|+.|++|++...
T Consensus       237 ~g~-~~~~~--~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          237 DGQ-LISAL--ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             TSC-EEEEE--EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCC-EEEEE--cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            421 11111  111122235667765  555555 67999999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=4.2e-15  Score=132.74  Aligned_cols=204  Identities=10%  Similarity=0.048  Sum_probs=141.3

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-eEEEc---------ccCccCeEEEEEcC-CC-eEEEEe-CCCeE
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-CIETI---------QAHSEPINALVVAD-DG-VLYSAS-DDATV  259 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~-~l~s~~-~dg~i  259 (434)
                      +......++++++++++++...++.|++||..... .+..+         ..+......++++| ++ ++++.+ .++.|
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            45578999999999988888888999999986542 44544         23445788999999 67 566664 68999


Q ss_pred             EEEecccccCcceeEEEEEe------cccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce
Q 046226          260 RVWRRYFYSENQLHTLILTL------TAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV  332 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  332 (434)
                      ++||..   ..........-      ..+......++++|+ +.++++...++.|++||..+......+  ....+...+
T Consensus       169 ~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~--~~~~~~~~~  243 (329)
T 3fvz_A          169 VQFSPS---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI--KHASFGRNV  243 (329)
T ss_dssp             EEECTT---SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE--CCTTTTTCE
T ss_pred             EEEcCC---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE--eccccCCCc
Confidence            999854   21111111000      122345889999998 777777788999999998633322222  112344456


Q ss_pred             EEEEeeCCE--------EEEecCCCcEEEEeccCCCceeeEEEe---eccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226          333 MCLASVANY--------VISGSADSTSRVWAREQDGRHTMLAVL---VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL  401 (434)
Q Consensus       333 ~~~~~~~~~--------l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  401 (434)
                      .++++.+..        +++...+..|++||..++   +.+..+   .++...+..++++|+         |.++++...
T Consensus       244 ~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~d---------G~lyvad~~  311 (329)
T 3fvz_A          244 FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASED---------GTVYIGDAH  311 (329)
T ss_dssp             EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTT---------SEEEEEESS
T ss_pred             ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCC---------CCEEEEECC
Confidence            666665433        333344568999999887   555555   467777899999998         889999999


Q ss_pred             CCeEEEEecCCC
Q 046226          402 DGVLKMWRVTRP  413 (434)
Q Consensus       402 Dg~v~iw~~~~~  413 (434)
                      ++.|++|++...
T Consensus       312 ~~~I~~~~~~~~  323 (329)
T 3fvz_A          312 TNTVWKFTLTEK  323 (329)
T ss_dssp             SCCEEEEEEEEC
T ss_pred             CCEEEEEeCCcc
Confidence            999999998743

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=7.5e-15  Score=131.44  Aligned_cols=263  Identities=10%  Similarity=0.025  Sum_probs=167.5

Q ss_pred             cEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EE-EEEEcCCeEEEeecCCCCCceeeE
Q 046226           94 QILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RV-YAAYGDGKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus        94 ~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l-~~~s~dg~i~vwd~~~~~~~~~~~  169 (434)
                      .|.+++|  ++..++..+.++.++.|   .++....+..+...+.+++|+++ .+ +++..++.|.+||..+++......
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred             ccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence            4556666  44555656778888888   34555566666777899999987 44 456678999999987554322110


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC----CcEEEEEcCCCeeEEEcc--cCccCeEEEE
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD----KTIKVWRIRDSKCIETIQ--AHSEPINALV  243 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~  243 (434)
                                            .+...+.+++++++++++++...+    +.|.+||.++++....+.  .+...+.+++
T Consensus        84 ----------------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~  141 (333)
T 2dg1_A           84 ----------------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMV  141 (333)
T ss_dssp             ----------------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEE
T ss_pred             ----------------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceE
Confidence                                  245679999999999888777666    689999998776543332  2445789999


Q ss_pred             EcCCC-eEEEEeC------CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEE-EEcCCCeEEEEEcCcc
Q 046226          244 VADDG-VLYSASD------DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLY-GGCTDGYIHYWHKGWF  315 (434)
Q Consensus       244 ~~~~~-~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~  315 (434)
                      +.+++ ++++...      .+.|..+|..  . ......    ......+..++|+|+++.|+ +...++.|.+||+...
T Consensus       142 ~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--~-~~~~~~----~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~  214 (333)
T 2dg1_A          142 FDSKGGFYFTDFRGYSTNPLGGVYYVSPD--F-RTVTPI----IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  214 (333)
T ss_dssp             ECTTSCEEEEECCCBTTBCCEEEEEECTT--S-CCEEEE----EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ECCCCCEEEEeccccccCCCceEEEEeCC--C-CEEEEe----ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence            99999 4444432      2455555543  1 111111    12234578899999998665 4456889999998532


Q ss_pred             ccccc-----ccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecccc------ceeEEEEee
Q 046226          316 SAQLQ-----YGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG------PIRCAIAFL  382 (434)
Q Consensus       316 ~~~~~-----~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~------~v~~~~~~~  382 (434)
                      .....     ....+.++ ..+..+.++  |+++++...++.|.+||.. +   ..+..+..+..      .+.+++|+|
T Consensus       215 g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~~~~~~~~~g~~~~~~~~~~~~  289 (333)
T 2dg1_A          215 GVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQILIPGRDEGHMLRSTHPQFIP  289 (333)
T ss_dssp             SSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             CcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEEEEcCCCccccccCcceEEECC
Confidence            11110     00111222 345667765  6677777778899999984 3   34444444332      688999988


Q ss_pred             cccCCCCCCcccEEEEeecC
Q 046226          383 GRFGEETEDEYCTICTGSLD  402 (434)
Q Consensus       383 ~~~~~~~~~~~~~l~s~~~D  402 (434)
                      +         +..|+.++.+
T Consensus       290 d---------g~~L~v~~~~  300 (333)
T 2dg1_A          290 G---------TNQLIICSND  300 (333)
T ss_dssp             T---------SCEEEEEEEC
T ss_pred             C---------CCEEEEEeCc
Confidence            7         6556555544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=2.3e-14  Score=129.01  Aligned_cols=254  Identities=9%  Similarity=-0.008  Sum_probs=162.9

Q ss_pred             EEEEEEcCCEEEEEe---------CCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcC---Ce--EEEee
Q 046226           95 ILCIAVGNGFIYTGS---------DSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD---GK--IRVWR  158 (434)
Q Consensus        95 v~~~~~~~~~l~tg~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d---g~--i~vwd  158 (434)
                      +...+++|+.++...         .++.|.+||+.+++... +    ..+..++|+|+  .|+.++.+   +.  |.+||
T Consensus        17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~   91 (347)
T 2gop_A           17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD   91 (347)
T ss_dssp             EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred             cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence            444444777766542         36789999998876543 3    56788999998  67666653   33  67777


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC-----------------------
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD-----------------------  215 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------------------  215 (434)
                      +..++.....                       .+.. +..++|+|+++.|+.++.+                       
T Consensus        92 ~~~g~~~~l~-----------------------~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  147 (347)
T 2gop_A           92 LETLSSKKIL-----------------------EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFF  147 (347)
T ss_dssp             TTTTEEEEEE-----------------------EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-------
T ss_pred             CCCCceEEEE-----------------------cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccc
Confidence            7654322211                       1233 8999999999998887642                       


Q ss_pred             ----CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCC------C-eEEEEecccccCcceeEEEEEeccccc
Q 046226          216 ----KTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDD------A-TVRVWRRYFYSENQLHTLILTLTAKYS  284 (434)
Q Consensus       216 ----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d------g-~i~iwd~~~~~~~~~~~~~~~~~~~~~  284 (434)
                          ..|++||+.+++.+..+.. . .+..+.|+|+++++++..+      . ...+|.+.  .. ... .+   ..+ .
T Consensus       148 ~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~-~~~-~l---~~~-~  217 (347)
T 2gop_A          148 DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DG-KEE-KM---FEK-V  217 (347)
T ss_dssp             --CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TT-EEE-EE---EEE-E
T ss_pred             cCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CC-ceE-Ee---ccC-c
Confidence                5799999998887455554 3 7889999999944455443      2 44555544  11 111 11   112 3


Q ss_pred             CeEEEEEecCCCEEEEEcCC--------CeEEEEEcCcccccccccCcccCcccceEE-EEeeCCEEEEecCCCcEEEEe
Q 046226          285 PVKTLTLTLDDGLLYGGCTD--------GYIHYWHKGWFSAQLQYGGALQGHTHAVMC-LASVANYVISGSADSTSRVWA  355 (434)
Q Consensus       285 ~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~s~~~dg~i~iwd  355 (434)
                      .+..+  +|+|++|+.++.+        ..|.+|| . .. ...   ....+...+.. +.|+..++++++.++.++|| 
T Consensus       218 ~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~-~~-~~~---l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-  288 (347)
T 2gop_A          218 SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-G-KE-VMG---ILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-  288 (347)
T ss_dssp             SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-S-SC-EEE---SSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-
T ss_pred             ceeeE--CCCCCEEEEEEccccCCccccceEEEEC-C-Cc-eEe---ccccCCcccCCccEEcCcEEEEEecCCcEEEE-
Confidence            44444  9999988877644        3677777 2 11 111   22345556664 66652288888999999999 


Q ss_pred             ccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeE-EEEecC
Q 046226          356 REQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVL-KMWRVT  411 (434)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v-~iw~~~  411 (434)
                      +.++   .. ..+..+.+.|.+++|+| .          ++++++.++.. .+|.++
T Consensus       289 ~~~g---~~-~~~~~~~~~v~~~~~s~-~----------~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          289 IWDG---EI-KPIAKGRHWIMGFDVDE-I----------VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EESS---SE-EEEECSSSEEEEEEESS-S----------EEEEEECSSSCCEEEEES
T ss_pred             EcCC---ce-EEEecCCCeEEeeeeeC-c----------EEEEEcCCCChHHheEeC
Confidence            8843   22 33344577888898886 3          67777777765 788776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=1.6e-16  Score=145.81  Aligned_cols=283  Identities=6%  Similarity=-0.104  Sum_probs=168.4

Q ss_pred             EEEEEE--cCCEEEEEeCC---CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCcee
Q 046226           95 ILCIAV--GNGFIYTGSDS---NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      +.+++|  +|++|+....+   ..|.+||+.+++.......+......+.|+|+  .|+.++.++.|++||+..++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            556677  78887766543   47889999888765543333332333789997  788888899999999877654322


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCe-----EEEEEecCCCEEEEE-----ecCCcEEEEEcCCCeeEEEcccCcc
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPI-----TSIAINVSDDTLYSA-----SLDKTIKVWRIRDSKCIETIQAHSE  237 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~  237 (434)
                      ...   +.  .....   +...........     ..+.|+|+++.++.+     ..+..|++||+.+++..... .+..
T Consensus       118 ~~~---~~--~~~~~---g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~  188 (396)
T 3c5m_A          118 YTV---DE--EWKGY---GTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTA  188 (396)
T ss_dssp             EEC---CT--TEEEE---EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESS
T ss_pred             Eec---cc--ccCCC---CCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCc
Confidence            211   00  00000   000000000000     013567888877654     35678999999988765444 4667


Q ss_pred             CeEEEEEcC-CC-eEEEEeCC------CeEEEEecccccCcceeEEEEEeccc--ccCeEEEEEecCCCEEEEEcCC---
Q 046226          238 PINALVVAD-DG-VLYSASDD------ATVRVWRRYFYSENQLHTLILTLTAK--YSPVKTLTLTLDDGLLYGGCTD---  304 (434)
Q Consensus       238 ~v~~~~~~~-~~-~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d---  304 (434)
                      .+..+.|+| ++ .|+..+.+      ..|.+||+.   ....    ..+..+  ...+..++|+|+|++|+.++.+   
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~---~~~~----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (396)
T 3c5m_A          189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED---GSNV----RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ  261 (396)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT---SCCC----EESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred             ccccceECCCCCCEEEEEecCCCCCCCceEEEEECC---CCce----eEeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence            789999999 67 56655543      357788765   1111    111112  2357789999999987776543   


Q ss_pred             --CeEEEEEcCcccccccccCcccCcccceEEEEe-eCCEEEEec----------------CCCcEEEEeccCCCceeeE
Q 046226          305 --GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-VANYVISGS----------------ADSTSRVWAREQDGRHTML  365 (434)
Q Consensus       305 --g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~----------------~dg~i~iwd~~~~~~~~~~  365 (434)
                        +.|++||+........  ....++.   ..++. +|++++.++                .+..|++||+.++..    
T Consensus       262 ~~~~l~~~d~~~g~~~~l--~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~----  332 (396)
T 3c5m_A          262 TDRVIYKANPETLENEEV--MVMPPCS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA----  332 (396)
T ss_dssp             CCEEEEEECTTTCCEEEE--EECCSEE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC----
T ss_pred             ccceEEEEECCCCCeEEe--eeCCCCC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce----
Confidence              4599999865432211  1122221   34455 677777654                347899999987632    


Q ss_pred             EEeecccc-----------ceeEEEEeecccCCCCCCcccEEEEeec-CCeEEEEecC
Q 046226          366 AVLVGHRG-----------PIRCAIAFLGRFGEETEDEYCTICTGSL-DGVLKMWRVT  411 (434)
Q Consensus       366 ~~~~~h~~-----------~v~~~~~~~~~~~~~~~~~~~~l~s~~~-Dg~v~iw~~~  411 (434)
                      ..+..+..           .+..++|+|+         |+.|+.++. ++...+|.++
T Consensus       333 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~d---------g~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          333 QKLCKHSTSWDVLDGDRQITHPHPSFTPN---------DDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CEEEECCCCCCCBTTBSSTTCCCCEECTT---------SSEEEEEECTTSSCEEEEEE
T ss_pred             EEccCCCCccccccccccCCCCCceEccC---------CCeEEEEecCCCCceEEEEE
Confidence            22333443           2556788888         777766654 5666666554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=1.5e-15  Score=149.27  Aligned_cols=227  Identities=8%  Similarity=-0.039  Sum_probs=147.9

Q ss_pred             cCCE-EEEEeC-CCeEEEecCC--CceeEeeccC-----CCccEEEEEEeCC--EEEEEEcC----------CeEEEeec
Q 046226          101 GNGF-IYTGSD-SNVIRIWKQP--EFTECGRLKA-----KTSMVVAMEVSHD--RVYAAYGD----------GKIRVWRS  159 (434)
Q Consensus       101 ~~~~-l~tg~~-dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~l~~~~~--~l~~~s~d----------g~i~vwd~  159 (434)
                      +|+. |+.++. +..|.+|++.  .......+..     |...+..++|+||  .|+.++.+          ..|++||+
T Consensus        89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~  168 (662)
T 3azo_A           89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL  168 (662)
T ss_dssp             SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred             CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence            5777 665544 5677778775  2033444554     6778899999998  78777766          58999998


Q ss_pred             CCC-----CCceeeEeeeccCCCCceeEEEecccccc-CcCCCeEEEEEecCCCEEEEEecC--------CcEEEEEcC-
Q 046226          160 TWD-----NGVKHVKLATIPKTGGAVRNLIVGKDKMM-KHMGPITSIAINVSDDTLYSASLD--------KTIKVWRIR-  224 (434)
Q Consensus       160 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d--------g~i~vwd~~-  224 (434)
                      ...     .....+                      . .+...+..++|+|||++|+.++.+        ..|++||+. 
T Consensus       169 ~~~~~~~~~~~~~l----------------------~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~  226 (662)
T 3azo_A          169 DGSAAADRSAVREL----------------------SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE  226 (662)
T ss_dssp             TSTTTTCGGGSEES----------------------SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred             CCCccccCCceeEE----------------------EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC
Confidence            762     111111                      1 244567788999999999987755        379999998 


Q ss_pred             CC---eeEEEcccCccCeEEEEEcCCC-eEEEEeCCC--eEEEEecccccCcceeEEEEEecccccC--------eEEEE
Q 046226          225 DS---KCIETIQAHSEPINALVVADDG-VLYSASDDA--TVRVWRRYFYSENQLHTLILTLTAKYSP--------VKTLT  290 (434)
Q Consensus       225 ~~---~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------v~~~~  290 (434)
                      ++   +.......+...+..+.|+||| +++++..++  .|.+||+.  ..    ........+...        +..++
T Consensus       227 ~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~--~~----~~~~l~~~~~~~~~p~w~~~~~~~~  300 (662)
T 3azo_A          227 DGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA--TG----AATQLCRREEEFAGPLWTPGMRWFA  300 (662)
T ss_dssp             TSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTT--TC----CEEESSCCSSBSSCCCCSTTCCSEE
T ss_pred             CCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECC--CC----ceeecccccccccCccccccCceEe
Confidence            56   4444444557889999999999 777888888  55555543  11    111111122111        46788


Q ss_pred             EecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEE-EeeCCE--EEEecCCCc--EEEEeccCC
Q 046226          291 LTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL-ASVANY--VISGSADST--SRVWAREQD  359 (434)
Q Consensus       291 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~--l~s~~~dg~--i~iwd~~~~  359 (434)
                      |++++++++++.. +.++||.++......   ..+..|...+..+ +++++.  +++++.+..  |.+||+.++
T Consensus       301 ~~~~~~~~~~~~~-~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          301 PLANGLIAVVHGK-GAAVLGILDPESGEL---VDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             ECTTSCEEEEEBS-SSCEEEEEETTTTEE---EECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             EeCCCEEEEEEEc-CccEEEEEECCCCcE---EEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            9999999999998 999999543222222   2344566677777 888773  344455544  555566555

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.68  E-value=4.8e-15  Score=135.68  Aligned_cols=256  Identities=8%  Similarity=-0.058  Sum_probs=164.3

Q ss_pred             EecCCCceeEeeccCCCccEEE-----EEEeCC--EEEEEEc-CC--eEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226          116 IWKQPEFTECGRLKAKTSMVVA-----MEVSHD--RVYAAYG-DG--KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV  185 (434)
Q Consensus       116 iwd~~~~~~~~~~~~~~~~v~~-----l~~~~~--~l~~~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
                      .+|..++..+..+..|......     .+|+||  .|+.++. ++  .|.+||+.+++.....                 
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-----------------   76 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-----------------   76 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-----------------
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-----------------
Confidence            4577788888888888776666     789997  6777776 66  4777887655332221                 


Q ss_pred             ccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE--EcCCC-eEEEE---------
Q 046226          186 GKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV--VADDG-VLYSA---------  253 (434)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~-~l~s~---------  253 (434)
                           .++...+..++|+||++.|+.+..++.|++||+.+++....+..+...+....  +++++ +++..         
T Consensus        77 -----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~  151 (388)
T 3pe7_A           77 -----EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVP  151 (388)
T ss_dssp             -----CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred             -----eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccc
Confidence                 13444455678999999999999999999999999987766666665554443  47888 54422         


Q ss_pred             -------------eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCC------CeEEEEEcC
Q 046226          254 -------------SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTD------GYIHYWHKG  313 (434)
Q Consensus       254 -------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~  313 (434)
                                   ..+..|.+||+..  + ..    ..+..+...+..+.|+| +|+.|+....+      ..|.++|+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~d~~~--g-~~----~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (388)
T 3pe7_A          152 LTDWKKFHEFYFTKPCCRLMRVDLKT--G-ES----TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED  224 (388)
T ss_dssp             CCSHHHHHHHGGGCCCEEEEEEETTT--C-CE----EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred             ccccchhhhhhccCCcceEEEEECCC--C-ce----EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence                         2446789999872  1 11    12223455788999999 99988877653      377788765


Q ss_pred             cccccccccCcccCcc--cceEEEEee--CCEEEEecC-C----CcEEEEeccCCCceeeEEEeeccccc---eeEEEEe
Q 046226          314 WFSAQLQYGGALQGHT--HAVMCLASV--ANYVISGSA-D----STSRVWAREQDGRHTMLAVLVGHRGP---IRCAIAF  381 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~--~~v~~~~~~--~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~h~~~---v~~~~~~  381 (434)
                      .....     .+..+.  ..+....|+  |+.|+..+. +    ..|++||+.++.. ..+..+.++...   ...+.|+
T Consensus       225 ~~~~~-----~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~s  298 (388)
T 3pe7_A          225 GTNMR-----KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMV  298 (388)
T ss_dssp             SCCCE-----ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEE
T ss_pred             CCceE-----EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEc
Confidence            33221     111222  245566664  665544332 2    2399999998743 344444442111   1223688


Q ss_pred             ecccCCCCCCcccEEEEe---------ecCCeEEEEecCCCCc
Q 046226          382 LGRFGEETEDEYCTICTG---------SLDGVLKMWRVTRPKS  415 (434)
Q Consensus       382 ~~~~~~~~~~~~~~l~s~---------~~Dg~v~iw~~~~~~~  415 (434)
                      |+         |+.|+..         ..+..|++||+.+++.
T Consensus       299 pd---------g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          299 GD---------GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             EE---------ECCC------------CCCCEEEEEETTTTEE
T ss_pred             cC---------CCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            88         7777643         5567999999987653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=5.4e-14  Score=125.55  Aligned_cols=247  Identities=8%  Similarity=0.049  Sum_probs=167.0

Q ss_pred             cccEEEEEE--cCCEEEEEeCC------------------------CeEEEecCCCceeEeecc-CCCccEEEEEEeCC-
Q 046226           92 DGQILCIAV--GNGFIYTGSDS------------------------NVIRIWKQPEFTECGRLK-AKTSMVVAMEVSHD-  143 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~-  143 (434)
                      -+.+.++++  +|+++++...+                        +.|.+||..+++.+..+. .+-.....++++++ 
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            356899999  78888888777                        479999998888776654 34457899999987 


Q ss_pred             -EEEEEEcCCeEEEeecCCCC-CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEe-cCCcEE
Q 046226          144 -RVYAAYGDGKIRVWRSTWDN-GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSAS-LDKTIK  219 (434)
Q Consensus       144 -~l~~~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~-~dg~i~  219 (434)
                       .+++...++.|++||..... .+..+.  .....+           .-.++......++++| ++.++++.+ .++.|+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~--~~~~~g-----------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILG--RSMQPG-----------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEES--BTTBCC-----------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEec--ccCCCC-----------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence             45555568999999975432 222221  000000           0013555789999999 777777775 689999


Q ss_pred             EEEcCCCeeEEEcccC----------ccCeEEEEEcCC-C-eEEEEeCCCeEEEEecccccCcceeEEEEEe--cccccC
Q 046226          220 VWRIRDSKCIETIQAH----------SEPINALVVADD-G-VLYSASDDATVRVWRRYFYSENQLHTLILTL--TAKYSP  285 (434)
Q Consensus       220 vwd~~~~~~~~~~~~~----------~~~v~~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~  285 (434)
                      +|| .+++.+..+...          ......|+++++ + ++++...++.|++||..  .    ......+  ..+...
T Consensus       170 ~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--~----G~~~~~~~~~~~~~~  242 (329)
T 3fvz_A          170 QFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD--T----KEFVREIKHASFGRN  242 (329)
T ss_dssp             EEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT--T----CCEEEEECCTTTTTC
T ss_pred             EEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC--C----CcEEEEEeccccCCC
Confidence            999 567777766432          234889999998 6 67777788999999975  1    1222222  345567


Q ss_pred             eEEEEEec------CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEecc
Q 046226          286 VKTLTLTL------DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       286 v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~  357 (434)
                      +..++++|      +++..++...+..|++||+........+ ....++...+.+++++  |+++++...++.|++|++.
T Consensus       243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~-~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF-KPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE-CCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE-cCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            88899998      3333333344568999998654433222 1123555667788876  5578888889999999987


Q ss_pred             CC
Q 046226          358 QD  359 (434)
Q Consensus       358 ~~  359 (434)
                      ..
T Consensus       322 ~~  323 (329)
T 3fvz_A          322 EK  323 (329)
T ss_dssp             EC
T ss_pred             cc
Confidence            53

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=1.5e-13  Score=130.42  Aligned_cols=275  Identities=9%  Similarity=0.003  Sum_probs=189.1

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC--CCCCceeeEeeeccCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST--WDNGVKHVKLATIPKT  176 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~  176 (434)
                      .+.++++...++.|.++|..+++.+.++... ..+..+.++|+  ++++++.|+.|.+||+.  +.+.+..+.       
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~-------  237 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-------  237 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE-------
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-------
Confidence            4456777788999999999999999888754 35678999998  78889999999999985  444444332       


Q ss_pred             CCceeEEEeccccccCcCCCeEEEEEe----cCCCEEEEEec-CCcEEEEEcCCCeeEEEcccC-----------ccCeE
Q 046226          177 GGAVRNLIVGKDKMMKHMGPITSIAIN----VSDDTLYSASL-DKTIKVWRIRDSKCIETIQAH-----------SEPIN  240 (434)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~-----------~~~v~  240 (434)
                                      .......++|+    |||++++++.. ++.|.++|..+.+.+..+...           ...+.
T Consensus       238 ----------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva  301 (567)
T 1qks_A          238 ----------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA  301 (567)
T ss_dssp             ----------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             ----------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence                            22345789999    69999887765 589999999999988776532           12577


Q ss_pred             EEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCcccc
Q 046226          241 ALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSA  317 (434)
Q Consensus       241 ~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~  317 (434)
                      .+..++++  .++....+|.|.++|.....   .. ....+ ........+.|+|++++++++. .++.|.++|+.+.+.
T Consensus       302 ~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~---~~-~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl  376 (567)
T 1qks_A          302 AILASHYRPEFIVNVKETGKILLVDYTDLN---NL-KTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL  376 (567)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEETTCSS---EE-EEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEEecCCCeEEEEecCCCc---cc-eeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence            88888887  66677788999999976211   11 11122 2334577889999999987765 578999999976543


Q ss_pred             cccccC-cccCcccceEEE-EeeCC-EEEEec-CCCcEEEEeccCCCc----eeeEEEeeccccceeEEEEeecccCCCC
Q 046226          318 QLQYGG-ALQGHTHAVMCL-ASVAN-YVISGS-ADSTSRVWAREQDGR----HTMLAVLVGHRGPIRCAIAFLGRFGEET  389 (434)
Q Consensus       318 ~~~~~~-~~~~~~~~v~~~-~~~~~-~l~s~~-~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~~  389 (434)
                      ...... ....|.+.-..+ ..++. .++++. .++.|.++|..+.+.    ++.+..+......-..+..+|+      
T Consensus       377 ~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~------  450 (567)
T 1qks_A          377 VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN------  450 (567)
T ss_dssp             EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT------
T ss_pred             EEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCC------
Confidence            322211 112343222222 33333 444443 568999999987321    4566776655333344777888      


Q ss_pred             CCcccEEEEeec-------CCeEEEEecCCC
Q 046226          390 EDEYCTICTGSL-------DGVLKMWRVTRP  413 (434)
Q Consensus       390 ~~~~~~l~s~~~-------Dg~v~iw~~~~~  413 (434)
                         +++|.....       .++|.++|+.+.
T Consensus       451 ---~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          451 ---SQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             ---CSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             ---CCeEEEecCCCCCcccCceEEEEECCcc
Confidence               777777552       469999999876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=3.4e-12  Score=112.00  Aligned_cols=276  Identities=11%  Similarity=0.040  Sum_probs=181.2

Q ss_pred             eccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEe-eccCCCccEEEEEEeCC-EEEEEEc-CCeEEEeecCCCCC
Q 046226           90 KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECG-RLKAKTSMVVAMEVSHD-RVYAAYG-DGKIRVWRSTWDNG  164 (434)
Q Consensus        90 ~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~s~-dg~i~vwd~~~~~~  164 (434)
                      .+...+.++++  +|+++++...++.|.+||.. ++... ....+...+.++++.++ .++.+.. ++.|..||.. + .
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~   88 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G-I   88 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-C
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C-c
Confidence            45567999999  67766666668899999987 44332 22334567899999886 5555554 7889999865 2 1


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE-EcccCccCeEEEE
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE-TIQAHSEPINALV  243 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~  243 (434)
                      ...+..   +                 .....+.++++.+++.++++...++.|.+||. +++... ........+..++
T Consensus        89 ~~~~~~---~-----------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~  147 (299)
T 2z2n_A           89 IKEYTL---P-----------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT  147 (299)
T ss_dssp             EEEEEC---S-----------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred             EEEEeC---C-----------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE
Confidence            222210   0                 13456889999999988887777889999998 554432 2333456789999


Q ss_pred             EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccccc
Q 046226          244 VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYG  322 (434)
Q Consensus       244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  322 (434)
                      +.+++ ++++...++.|..||..   .. ..  ..........+..+++++++++.++...++.|.+||. ..... .. 
T Consensus       148 ~~~~g~l~v~~~~~~~i~~~~~~---g~-~~--~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~-  218 (299)
T 2z2n_A          148 LGSDNALWFTENQNNAIGRITES---GD-IT--EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EF-  218 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT---CC-EE--EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EE-
T ss_pred             EcCCCCEEEEeCCCCEEEEEcCC---Cc-EE--EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EE-
Confidence            99998 55555567889999863   11 11  1122334456889999999997777777889999997 32211 11 


Q ss_pred             CcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226          323 GALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       323 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                       ....+...+.++.++  |+++++...++.|..||.. + . .....+..+...+.++++ ++         +.+.++..
T Consensus       219 -~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~-~~~~~~~~~~~~~~~i~~-~~---------g~l~v~~~  284 (299)
T 2z2n_A          219 -KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-N-I-IEEYPIQIKSAEPHGICF-DG---------ETIWFAME  284 (299)
T ss_dssp             -ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-T-E-EEEEECSSSSCCEEEEEE-CS---------SCEEEEET
T ss_pred             -ECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-C-c-eEEEeCCCCCCccceEEe-cC---------CCEEEEec
Confidence             122344567788776  5566665578899999983 3 1 122223445567888988 76         66666655


Q ss_pred             cCCeEEEEecCCC
Q 046226          401 LDGVLKMWRVTRP  413 (434)
Q Consensus       401 ~Dg~v~iw~~~~~  413 (434)
                       .+.|..++..++
T Consensus       285 -~~~l~~~~~~~~  296 (299)
T 2z2n_A          285 -CDKIGKLTLIKD  296 (299)
T ss_dssp             -TTEEEEEEEC--
T ss_pred             -CCcEEEEEcCcc
Confidence             567777777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.67  E-value=4.2e-14  Score=140.44  Aligned_cols=322  Identities=11%  Similarity=-0.054  Sum_probs=188.7

Q ss_pred             CCCCCCCCCCccCCCCCCCcccc-----eeeeEEEeecccc-----EEEEEE--cCCEEEEEeCC---------CeEEEe
Q 046226           59 SSPRHPFNPTAAAGSSSPETSSS-----YRCISSVLKKDGQ-----ILCIAV--GNGFIYTGSDS---------NVIRIW  117 (434)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~-----v~~~~~--~~~~l~tg~~d---------g~i~iw  117 (434)
                      ..+.+.+++..+++.  +.++..     .++...+.+|...     ...++|  ||++|+.++.+         +.+.+|
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            345566666666664  445444     3455556666543     223566  99999999876         566799


Q ss_pred             cCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC-
Q 046226          118 KQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM-  194 (434)
Q Consensus       118 d~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  194 (434)
                      |+.+++.. .+..|...+...+|+||  .|+.+ .|+.|++|++..++......      .+....       .+.++. 
T Consensus        98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~------~g~~~~-------~~~g~~~  162 (740)
T 4a5s_A           98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITW------TGKEDI-------IYNGITD  162 (740)
T ss_dssp             ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCS------CCBTTT-------EEESBCC
T ss_pred             ECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcC------CCCccc-------eecCccc
Confidence            99998754 46677888999999998  56655 57899999987765332110      000000       001122 


Q ss_pred             --------CCeEEEEEecCCCEEEEEecCC------------------------------------cEEEEEcCC---Ce
Q 046226          195 --------GPITSIAINVSDDTLYSASLDK------------------------------------TIKVWRIRD---SK  227 (434)
Q Consensus       195 --------~~v~~~~~~~~~~~l~s~~~dg------------------------------------~i~vwd~~~---~~  227 (434)
                              +....+.|+|||++|+.++.|.                                    .|++||+.+   ++
T Consensus       163 ~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~  242 (740)
T 4a5s_A          163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT  242 (740)
T ss_dssp             HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred             ccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence                    2334689999999999875332                                    488899988   73


Q ss_pred             --eEEEcc------cCccCeEEEEEcCCC-eEEEEe----CCCeEEEEeccccc----CcceeEEEEEecccccCe----
Q 046226          228 --CIETIQ------AHSEPINALVVADDG-VLYSAS----DDATVRVWRRYFYS----ENQLHTLILTLTAKYSPV----  286 (434)
Q Consensus       228 --~~~~~~------~~~~~v~~~~~~~~~-~l~s~~----~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~v----  286 (434)
                        ....+.      +|...+..++|+||+ .++...    .+..|.+||+....    .........  ..+...+    
T Consensus       243 ~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~--~~~~~~v~~~~  320 (740)
T 4a5s_A          243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE--MSTTGWVGRFR  320 (740)
T ss_dssp             CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE--ECSSSCSSSSS
T ss_pred             cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee--ccCCceEccCc
Confidence              222333      377789999999999 454443    23479999987322    001111111  2233333    


Q ss_pred             -EEEEEecCCCEEE-EEc-CCC--eEEEEEcCcccccccccCcccCcccceEE-EEeeCCEEEE-ecC----CCcEEEEe
Q 046226          287 -KTLTLTLDDGLLY-GGC-TDG--YIHYWHKGWFSAQLQYGGALQGHTHAVMC-LASVANYVIS-GSA----DSTSRVWA  355 (434)
Q Consensus       287 -~~~~~~~~~~~l~-~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~s-~~~----dg~i~iwd  355 (434)
                       ....|+|||+.|+ ..+ .+|  .|++||+......     .+......+.. +.++++.|+. +..    .+...||.
T Consensus       321 ~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~  395 (740)
T 4a5s_A          321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYK  395 (740)
T ss_dssp             CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEE
T ss_pred             CCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEE
Confidence             3678999999876 554 344  6777787543222     11122333333 3467765443 433    24455555


Q ss_pred             ccCCCceeeEEEee----ccccceeEEEEeecccCCCCCCcccEEEEeecC---CeEEEEecCCCC
Q 046226          356 REQDGRHTMLAVLV----GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD---GVLKMWRVTRPK  414 (434)
Q Consensus       356 ~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D---g~v~iw~~~~~~  414 (434)
                      +...+. .....+.    +.......+.|+|+         +++++.....   ..+.+++...++
T Consensus       396 v~~~g~-~~~~~lt~~~~~~~~~~~~~~~S~d---------g~~~~~~~s~~~~p~~~l~~~~~~~  451 (740)
T 4a5s_A          396 IQLIDY-TKVTCLSCELNPERCQYYSVSFSKE---------AKYYQLRCSGPGLPLYTLHSSVNDK  451 (740)
T ss_dssp             EETTEE-EEEEESSTTTSTTTBCBEEEEECTT---------SSEEEEEECSBSSCEEEEEETTTTE
T ss_pred             EECCCC-CcceeeccccCCCCCceEEEEECCC---------CCEEEEEeCCCCCCEEEEEECCCCc
Confidence            543211 2221232    23456788999998         6655533322   367778877654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=1.5e-13  Score=122.51  Aligned_cols=262  Identities=7%  Similarity=-0.057  Sum_probs=175.6

Q ss_pred             CCCeEEEecCCCceeEeecc------CCCccEEEEEEeCCEEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCceeE
Q 046226          110 DSNVIRIWKQPEFTECGRLK------AKTSMVVAMEVSHDRVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN  182 (434)
Q Consensus       110 ~dg~i~iwd~~~~~~~~~~~------~~~~~v~~l~~~~~~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (434)
                      .++.|.+||.++++....+.      ........+.+..+.++++.. ++.|.+||..+.+.+..+.             
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-------------   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-------------   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-------------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-------------
Confidence            38899999999988776542      123456888888886666655 7999999998877655552             


Q ss_pred             EEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc-----cCeEEEEEcCCCeEEEEe--C
Q 046226          183 LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS-----EPINALVVADDGVLYSAS--D  255 (434)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~l~s~~--~  255 (434)
                                .......++++++++.+++...++.|.+||..+++....+....     .....+++ .++.++.+.  .
T Consensus        82 ----------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~  150 (328)
T 3dsm_A           82 ----------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSY  150 (328)
T ss_dssp             ----------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTT
T ss_pred             ----------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCC
Confidence                      34567889998888444444378999999999998877766433     14556777 455544444  4


Q ss_pred             CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC----------CeEEEEEcCcccccccccCcc
Q 046226          256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD----------GYIHYWHKGWFSAQLQYGGAL  325 (434)
Q Consensus       256 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~  325 (434)
                      ++.|.++|+..      ......+.. ......++++++|++++++..+          +.|.++|..+.+.....  .+
T Consensus       151 ~~~v~viD~~t------~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~--~~  221 (328)
T 3dsm_A          151 QNRILKIDTET------DKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF--KF  221 (328)
T ss_dssp             CCEEEEEETTT------TEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE--EC
T ss_pred             CCEEEEEECCC------CeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE--ec
Confidence            88999999872      122222222 2345678999999877776654          78999998654332221  11


Q ss_pred             cCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe----
Q 046226          326 QGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG----  399 (434)
Q Consensus       326 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~----  399 (434)
                      . .......++++  +++|+++..  .|.+||..++... ....+..+......++++|+.        +.+.++.    
T Consensus       222 ~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~-~~~~~~~~~~~p~gi~vdp~~--------g~lyva~~~~y  289 (328)
T 3dsm_A          222 K-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP-VRPFLEFRDTKYYGLTVNPNN--------GEVYVADAIDY  289 (328)
T ss_dssp             C-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC-SSCSBCCCSSCEEEEEECTTT--------CCEEEEECTTS
T ss_pred             C-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee-eeeeecCCCCceEEEEEcCCC--------CeEEEEccccc
Confidence            1 11245677776  667776654  8999999876321 111122224567889999853        6777776    


Q ss_pred             ecCCeEEEEecCCCCccc
Q 046226          400 SLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       400 ~~Dg~v~iw~~~~~~~~~  417 (434)
                      ..++.|.+||.. ++.+.
T Consensus       290 ~~~~~V~v~d~~-g~~~~  306 (328)
T 3dsm_A          290 QQQGIVYRYSPQ-GKLID  306 (328)
T ss_dssp             SSEEEEEEECTT-CCEEE
T ss_pred             ccCCEEEEECCC-CCEEE
Confidence            678999999988 66543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=6e-13  Score=118.99  Aligned_cols=267  Identities=13%  Similarity=0.041  Sum_probs=166.0

Q ss_pred             CCCCCCCCCCCccCCCCCCCcccce--eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCc
Q 046226           58 LSSPRHPFNPTAAAGSSSPETSSSY--RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS  133 (434)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  133 (434)
                      +.+..+.++...+.....+..+..+  +....+..+...+.+++|  ++++++++..++.|.+||..+++.......+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   87 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA   87 (333)
T ss_dssp             CCBCCSCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSS
T ss_pred             cceeeecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCC
Confidence            3344445555555555445554444  334456667778899999  778778888899999999988776554445667


Q ss_pred             cEEEEEEeCC-EEEEEEc-C----CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226          134 MVVAMEVSHD-RVYAAYG-D----GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD  207 (434)
Q Consensus       134 ~v~~l~~~~~-~l~~~s~-d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (434)
                      .+.+++++++ .++++.. +    +.|.+||...........  .                  ..+...+.+++++|+++
T Consensus        88 ~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~--~------------------~~~~~~~~~i~~d~~g~  147 (333)
T 2dg1_A           88 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE--D------------------LSTAYCIDDMVFDSKGG  147 (333)
T ss_dssp             SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC--S------------------SSSCCCEEEEEECTTSC
T ss_pred             CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc--c------------------CccCCcccceEECCCCC
Confidence            8999999987 4555544 4    589999987554321110  0                  01345789999999998


Q ss_pred             EEEEEec------CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eE-EEEeCCCeEEEEecccccCcceeE----E
Q 046226          208 TLYSASL------DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VL-YSASDDATVRVWRRYFYSENQLHT----L  275 (434)
Q Consensus       208 ~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~----~  275 (434)
                      ++++...      .+.|..+|..+++... +......+..++|++++ .+ ++...++.|.+||+.... .....    .
T Consensus       148 l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~  225 (333)
T 2dg1_A          148 FYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG-VTIQPFGATI  225 (333)
T ss_dssp             EEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEE
T ss_pred             EEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC-cCcccccceE
Confidence            7776653      3567777766554432 32334467899999998 45 455567899999985211 11111    1


Q ss_pred             EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc--cCcccceEEEEee--CCEEEEecCC
Q 046226          276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL--QGHTHAVMCLASV--ANYVISGSAD  348 (434)
Q Consensus       276 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~~d  348 (434)
                      ......+ ..+..++++++|+++++...++.|.+||.... ....+....  .+|...+.+++++  ++.|+.++.+
T Consensus       226 ~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          226 PYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            1112222 35778999999998888777899999997421 111111000  1222256667764  4566655554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.66  E-value=1.4e-13  Score=136.07  Aligned_cols=243  Identities=10%  Similarity=0.020  Sum_probs=157.3

Q ss_pred             CCccEEEEEEeCC--EEEEEEcC-C----eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe
Q 046226          131 KTSMVVAMEVSHD--RVYAAYGD-G----KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN  203 (434)
Q Consensus       131 ~~~~v~~l~~~~~--~l~~~s~d-g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  203 (434)
                      |...+..++|+||  .|+.+..+ |    .|++||+.+++......                       ....+..++|+
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-----------------------~~~~~~~~~ws  179 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-----------------------ERVKFSCMAWT  179 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-----------------------EEECSCCEEEC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-----------------------cCcccceEEEE
Confidence            4456889999998  56655543 3    89999998765433210                       11226779999


Q ss_pred             cCCCEEEEEecCCc----------------EEEEEcCCCe----eEEEcccCccCeEEEEEcCCC-eEEEEeC-----CC
Q 046226          204 VSDDTLYSASLDKT----------------IKVWRIRDSK----CIETIQAHSEPINALVVADDG-VLYSASD-----DA  257 (434)
Q Consensus       204 ~~~~~l~s~~~dg~----------------i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-----dg  257 (434)
                      |||+.|+.+..++.                |++|++.+++    .+.....+...+..+.|+||+ +|+.++.     +.
T Consensus       180 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  259 (710)
T 2xdw_A          180 HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN  259 (710)
T ss_dssp             TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred             eCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence            99999999887766                9999998875    222333345567899999999 6665543     56


Q ss_pred             eEEEEeccccc----CcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC----CeEEEEEcCcccccccccCcccCcc
Q 046226          258 TVRVWRRYFYS----ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD----GYIHYWHKGWFSAQLQYGGALQGHT  329 (434)
Q Consensus       258 ~i~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~  329 (434)
                      .|.+||+....    ....   ...+..+...+.. .|+++|+.|+..+.+    +.|.+||+...... . ...+..|.
T Consensus       260 ~l~~~d~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~-~~~l~~~~  333 (710)
T 2xdw_A          260 RLWYCDLQQESNGITGILK---WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-K-WKVLVPEH  333 (710)
T ss_dssp             EEEEEEGGGSSSSSCSSCC---CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-G-CEEEECCC
T ss_pred             EEEEEECcccccccCCccc---eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-c-ceeccCCC
Confidence            89999987210    1111   1122334444444 488888887766553    36999998654311 0 01222332


Q ss_pred             c--ceEEEEee-CC-EEEEecCCCc--EEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEE-Eee--
Q 046226          330 H--AVMCLASV-AN-YVISGSADST--SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC-TGS--  400 (434)
Q Consensus       330 ~--~v~~~~~~-~~-~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~~--  400 (434)
                      .  .+..+.+. ++ ++++...|+.  |++|++.++   ..+..+..+.+.+..+.++|+         +..|+ +.+  
T Consensus       334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d---------~~~l~~~~ss~  401 (710)
T 2xdw_A          334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG---ALLKIFPLEVGSVVGYSGQKK---------DTEIFYQFTSF  401 (710)
T ss_dssp             SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC---CEEEEECCCSSEEEEEECCTT---------CSEEEEEEECS
T ss_pred             CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC---CEEEecCCCCceEEEEecCCC---------CCEEEEEEeCC
Confidence            2  56677776 44 6677777875  556676555   455666677778888988887         55444 333  


Q ss_pred             -cCCeEEEEecCCCC
Q 046226          401 -LDGVLKMWRVTRPK  414 (434)
Q Consensus       401 -~Dg~v~iw~~~~~~  414 (434)
                       ..++|+.||+.+++
T Consensus       402 ~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          402 LSPGIIYHCDLTKEE  416 (710)
T ss_dssp             SCCCEEEEEETTSSS
T ss_pred             CCCCEEEEEECCCCc
Confidence             45799999998876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.64  E-value=1.1e-13  Score=125.09  Aligned_cols=264  Identities=12%  Similarity=0.038  Sum_probs=170.3

Q ss_pred             ceeeeEEEeeccccEEEEEE--cCCEEEEEe----------CCCeEEEecCCCceeEeeccCC------CccEEEEEEeC
Q 046226           81 SYRCISSVLKKDGQILCIAV--GNGFIYTGS----------DSNVIRIWKQPEFTECGRLKAK------TSMVVAMEVSH  142 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~------~~~v~~l~~~~  142 (434)
                      +.+.+.++..+..+  .++|  ++++|+++.          .++.|.+||..+++.+.++...      ......++++|
T Consensus        40 t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp  117 (361)
T 2oiz_A           40 NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT  117 (361)
T ss_dssp             TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred             CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC
Confidence            34455566556555  7888  899999986          3678999999998888877532      23456789999


Q ss_pred             C--EEEEEEc--CCeEEEeecCCCCCcee-eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCC
Q 046226          143 D--RVYAAYG--DGKIRVWRSTWDNGVKH-VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDK  216 (434)
Q Consensus       143 ~--~l~~~s~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg  216 (434)
                      +  +|+++..  ++.|.+||+.+.+.+.. +.                       .. ....+.+.|++ ..+++.+.||
T Consensus       118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-----------------------~~-~~~~v~~~p~~~~~~~~~~~dg  173 (361)
T 2oiz_A          118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-----------------------AA-GCWSVIPQPNRPRSFMTICGDG  173 (361)
T ss_dssp             TSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-----------------------GT-TEEEEEECTTSSSEEEEEETTS
T ss_pred             CCCEEEEECCCCCCeEEEEECCCCcEEEEEec-----------------------CC-CcceeEEcCCCCeeEEEECCCC
Confidence            7  6777764  68999999987644333 21                       11 12224566765 6777888899


Q ss_pred             cEEEEEcCC-CeeEE------EcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec--c----c
Q 046226          217 TIKVWRIRD-SKCIE------TIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT--A----K  282 (434)
Q Consensus       217 ~i~vwd~~~-~~~~~------~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~----~  282 (434)
                      .+.+|++.. ++...      .+.....++ .+.+.+++ .++..+.++.|.++|+...  .  ......+.  .    .
T Consensus       174 ~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~--~--~~~~~~~~~~~~~~~~  248 (361)
T 2oiz_A          174 GLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGD--E--VKVDGPWSLLNDEDKA  248 (361)
T ss_dssp             SEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSS--S--CEEEEEEESCCHHHHH
T ss_pred             cEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCC--C--ceecccccccCccccc
Confidence            999999865 55441      122222222 22334556 6666678899999998511  1  11111111  0    0


Q ss_pred             ----ccCeEEEEEecCCCEEEEEcC-----------CCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEe
Q 046226          283 ----YSPVKTLTLTLDDGLLYGGCT-----------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISG  345 (434)
Q Consensus       283 ----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~  345 (434)
                          ......++++|+++.++++..           .+.|.+||+.+.+...    .+..+.  +.++++  +|++|+++
T Consensus       249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~----~i~~~~--p~~ia~spdg~~l~v~  322 (361)
T 2oiz_A          249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA----RIPGRD--ALSMTIDQQRNLMLTL  322 (361)
T ss_dssp             TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE----EEECTT--CCEEEEETTTTEEEEE
T ss_pred             cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE----EEecCC--eeEEEECCCCCEEEEe
Confidence                011223789999888887643           3589999987554332    333443  566666  57788888


Q ss_pred             cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          346 SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      +. +.|.+||..++ ..+.+..+..+......++++|+
T Consensus       323 n~-~~v~v~D~~t~-~l~~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          323 DG-GNVNVYDISQP-EPKLLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             CS-SCEEEEECSSS-SCEEEEEETTSCSSEEEEEECCC
T ss_pred             CC-CeEEEEECCCC-cceeeEEeccCCCCcEEEEecCC
Confidence            86 99999999875 22456666566777788999998

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=1.9e-13  Score=118.26  Aligned_cols=213  Identities=11%  Similarity=0.009  Sum_probs=148.9

Q ss_pred             eCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC-CCeEEEEEecCCCEEEEEecCCcE
Q 046226          141 SHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM-GPITSIAINVSDDTLYSASLDKTI  218 (434)
Q Consensus       141 ~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i  218 (434)
                      +|+ .|++++.|+.|.+||.++++.+..+..                      +. ..+.++.+.|+|++|+  +.++.|
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~----------------------~~~~~~~~~~~~pdG~ilv--s~~~~V   58 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPL----------------------EKGWECNSVAATKAGEILF--SYSKGA   58 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEEC----------------------CTTCCCCEEEECTTSCEEE--ECBSEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCC----------------------CccCCCcCeEECCCCCEEE--eCCCCE
Confidence            455 677778899999999888877666542                      22 4678899999999888  347789


Q ss_pred             EEEEcCCCeeEEEcccCc-cCeEEEEEcCCC-eEEEEeC-CCeEEEEecccccCcceeEEEEEe--cccccCeEEEEEec
Q 046226          219 KVWRIRDSKCIETIQAHS-EPINALVVADDG-VLYSASD-DATVRVWRRYFYSENQLHTLILTL--TAKYSPVKTLTLTL  293 (434)
Q Consensus       219 ~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~  293 (434)
                      ..||. +++.+..+..+. ..+.++.+.+++ .+++.+. ++.|..+|..   +..........  ..+......+++.+
T Consensus        59 ~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~  134 (276)
T 3no2_A           59 KMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQINKNK  134 (276)
T ss_dssp             EEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCEECT
T ss_pred             EEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCceECC
Confidence            99999 899999988753 478889999999 7776666 7777777753   22222222111  12223455677889


Q ss_pred             CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEE--EeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226          294 DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL--ASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       294 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                      +|+++++...++.|..||.. .+...++...  .   .+.+.  ..+++.++++..++.|..+|..++   +.+..+..+
T Consensus       135 ~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~--~---~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~  205 (276)
T 3no2_A          135 KGNYLVPLFATSEVREIAPN-GQLLNSVKLS--G---TPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNAN  205 (276)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEEECS--S---CCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGG
T ss_pred             CCCEEEEecCCCEEEEECCC-CCEEEEEECC--C---CccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCC
Confidence            99999999999999999986 4444443221  1   12223  335789999988889999999987   566666543


Q ss_pred             c------cceeEEEEeecccCCCCCCcccEEEEe
Q 046226          372 R------GPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       372 ~------~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                      .      ..+..+...++         |.++++.
T Consensus       206 ~~~~~~l~~~~~~~~~~~---------G~i~v~~  230 (276)
T 3no2_A          206 DIEGVQLFFVAQLFPLQN---------GGLYICN  230 (276)
T ss_dssp             GSBSCCCSEEEEEEECTT---------SCEEEEE
T ss_pred             CCCCccccccccceEcCC---------CCEEEEe
Confidence            2      12566777776         6666665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=4.3e-14  Score=139.35  Aligned_cols=274  Identities=13%  Similarity=0.041  Sum_probs=165.7

Q ss_pred             EcCCEEEEEeCCC-----eEEEecCCCceeEeec------cCCCccEEEEEEeCC--EEEEE-----EcCCeEEEeecCC
Q 046226          100 VGNGFIYTGSDSN-----VIRIWKQPEFTECGRL------KAKTSMVVAMEVSHD--RVYAA-----YGDGKIRVWRSTW  161 (434)
Q Consensus       100 ~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~------~~~~~~v~~l~~~~~--~l~~~-----s~dg~i~vwd~~~  161 (434)
                      .+|++++....++     .|.+.+...++....+      .+|...+..++|+||  .|+.+     +.+..|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            4677666555433     2344444343322222      245557899999998  55532     2246899999987


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCc-------------EEEEEcCCCe-
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKT-------------IKVWRIRDSK-  227 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~~-  227 (434)
                      ++......+                      .......++|+|||+.|+.++.|..             |++|++.+++ 
T Consensus       157 g~~~~~~~~----------------------~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~  214 (695)
T 2bkl_A          157 GEWSKVDVI----------------------EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS  214 (695)
T ss_dssp             CCBCSSCCB----------------------SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG
T ss_pred             CCCcCCccc----------------------CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch
Confidence            754311000                      1111267899999999999988776             9999998875 


Q ss_pred             ---eEEEcccCccCeEEEEEcCCC-eEEEEeCCC----eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEE
Q 046226          228 ---CIETIQAHSEPINALVVADDG-VLYSASDDA----TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLY  299 (434)
Q Consensus       228 ---~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  299 (434)
                         .+.....+...+..+.|+||| +|+.++.++    .|.+||..   ......    +..+...+....+ ++|.+++
T Consensus       215 ~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~---~~~~~~----l~~~~~~~~~~~~-~~g~l~~  286 (695)
T 2bkl_A          215 KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG---EKDFRL----LVKGVGAKYEVHA-WKDRFYV  286 (695)
T ss_dssp             GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT---CSSCEE----EEECSSCCEEEEE-ETTEEEE
T ss_pred             hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC---CCceEE----eecCCCceEEEEe-cCCcEEE
Confidence               343444455678899999999 666665554    56666542   111111    2223344455555 5566444


Q ss_pred             EEc---CCCeEEEEEcCcccccccccCcccCc-ccceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEeecc-cc
Q 046226          300 GGC---TDGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLVGH-RG  373 (434)
Q Consensus       300 ~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~  373 (434)
                      .+.   .++.|.+||+...... .....+..+ ...+..+++.++ ++++...|+..+||.+...+  .....+..+ .+
T Consensus       287 ~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g--~~~~~l~~~~~~  363 (695)
T 2bkl_A          287 LTDEGAPRQRVFEVDPAKPARA-SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKG--KPVRTVQLPGVG  363 (695)
T ss_dssp             EECTTCTTCEEEEEBTTBCSGG-GCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTC--CEEEECCCSSSS
T ss_pred             EECCCCCCCEEEEEeCCCCCcc-CCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCC--CeeEEecCCCCe
Confidence            443   2589999998654321 011112222 345677777654 67778889988888766321  344455544 56


Q ss_pred             ceeEEEEeecccCCCCCCcccEEE----EeecCCeEEEEecCCCCc
Q 046226          374 PIRCAIAFLGRFGEETEDEYCTIC----TGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       374 ~v~~~~~~~~~~~~~~~~~~~~l~----s~~~Dg~v~iw~~~~~~~  415 (434)
                      .+..+.++|+         +..|+    +....++|++||+.+++.
T Consensus       364 ~v~~~~~s~d---------~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          364 AASNLMGLED---------LDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EECCCBSCTT---------CSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEeecCCC---------CCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            6777888877         65555    334468899999987753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=3.1e-13  Score=118.74  Aligned_cols=242  Identities=10%  Similarity=-0.016  Sum_probs=157.0

Q ss_pred             eeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      ..+..+..+.....+++|+++   .++++..++.|..||...+  ...+.                      .+...+.+
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~----------------------~~~~~~~~   73 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM----------------------HPSHHQNG   73 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE----------------------SSCSSEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE----------------------CCCCCcce
Confidence            334445556667889999986   3666677899999998754  22221                      35567899


Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC----ccCeEEEEEcCCC-eEEE----Ee-------------CCC
Q 046226          200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH----SEPINALVVADDG-VLYS----AS-------------DDA  257 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~-~l~s----~~-------------~dg  257 (434)
                      ++++++++++++...++.|.+||..+++........    ...+..+++.++| ++++    ++             ..+
T Consensus        74 l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A           74 HCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             EEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             eeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence            999999998877776789999999887754333221    2356789999999 5554    32             123


Q ss_pred             eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226          258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS  337 (434)
Q Consensus       258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  337 (434)
                      .|..+|..    ...    .....+......++|+|+++.+++.+.++.|.+||+............+..+...+.++++
T Consensus       154 ~l~~~~~~----g~~----~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~  225 (296)
T 3e5z_A          154 WVFRLAPD----GTL----SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV  225 (296)
T ss_dssp             EEEEECTT----SCE----EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE
T ss_pred             EEEEECCC----CCE----EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE
Confidence            55555432    111    1223445567899999999998778888999999986211110000011123334455666


Q ss_pred             e--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEe-ecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          338 V--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF-LGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       338 ~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      +  |+++++.  ++.|.+||.. +   +.+..+..+.. +.+++|. |+         ++.|+.++.++ +.-++..+.
T Consensus       226 d~~G~l~v~~--~~~v~~~~~~-g---~~~~~~~~~~~-~~~~~f~~~d---------~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          226 DAGGLIWASA--GDGVHVLTPD-G---DELGRVLTPQT-TSNLCFGGPE---------GRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             BTTSCEEEEE--TTEEEEECTT-S---CEEEEEECSSC-CCEEEEESTT---------SCEEEEEETTE-EEEEECSCC
T ss_pred             CCCCCEEEEc--CCeEEEECCC-C---CEEEEEECCCC-ceeEEEECCC---------CCEEEEEcCCe-EEEEEcccc
Confidence            5  6655554  7899999986 4   56666777777 8999995 66         77788887763 334444433

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.63  E-value=3.3e-12  Score=115.42  Aligned_cols=279  Identities=6%  Similarity=-0.064  Sum_probs=175.2

Q ss_pred             cCCEEEEEeC--CC---eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------cCCeEEEeecCCCC
Q 046226          101 GNGFIYTGSD--SN---VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------GDGKIRVWRSTWDN  163 (434)
Q Consensus       101 ~~~~l~tg~~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~dg~i~vwd~~~~~  163 (434)
                      +++++++...  .+   .|.+||..+++.+.++.....+  .++++|+  .++++.          .++.|.+||..+.+
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~  108 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence            4455555442  22   8899999999998888765554  8999998  666665          36789999998766


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--CCcEEEEEcCCCeeEEE-cccCccCeE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--DKTIKVWRIRDSKCIET-IQAHSEPIN  240 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~  240 (434)
                      .+..+.+....              .. .+......++|+|||++|+++..  ++.|.++| .+++.+.. +....    
T Consensus       109 ~~~~i~~~~~~--------------~~-~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----  168 (373)
T 2mad_H          109 PIADIELPDAP--------------RF-DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----  168 (373)
T ss_pred             EEEEEECCCcc--------------cc-ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----
Confidence            55555321000              00 01123458899999999998874  47899999 99998877 65322    


Q ss_pred             EEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEE--EEecccccC-eEEEEEecCCCEEEEEcCCCeEEEEEcCcc
Q 046226          241 ALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLI--LTLTAKYSP-VKTLTLTLDDGLLYGGCTDGYIHYWHKGWF  315 (434)
Q Consensus       241 ~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  315 (434)
                      ++.+.+++  .+++.+.||.+.++|. ....  .....  ... ....+ .....+.+++..++..+.++.+.+.|+...
T Consensus       169 ~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~--~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          169 CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA--AGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE--EEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence            24455555  6677788999999987 2211  11110  001 11122 123456666665555557889999998543


Q ss_pred             cccccccCcc----------cCcccceEEEEeeCCEEEEecC----------CCcEEEEeccCCCceeeEEEeeccccce
Q 046226          316 SAQLQYGGAL----------QGHTHAVMCLASVANYVISGSA----------DSTSRVWAREQDGRHTMLAVLVGHRGPI  375 (434)
Q Consensus       316 ~~~~~~~~~~----------~~~~~~v~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v  375 (434)
                      .........+          .........+..+++.+++...          ++.|.++|+.+.   +.+..+.. ....
T Consensus       245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p  320 (373)
T 2mad_H          245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQISL-GHDV  320 (373)
T ss_pred             cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---EEEEEEEC-CCCc
Confidence            2111000000          0011112334445666655432          357999999887   56666643 3357


Q ss_pred             eEEEEeecccCCCCCCccc-EEEEee-cCCeEEEEecCCCCcccc
Q 046226          376 RCAIAFLGRFGEETEDEYC-TICTGS-LDGVLKMWRVTRPKSSCG  418 (434)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~-~l~s~~-~Dg~v~iw~~~~~~~~~~  418 (434)
                      .+++|+|+         |+ +++++. .++.|.+||+.+++....
T Consensus       321 ~~i~~s~D---------g~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          321 DAISVAQD---------GGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CeEEECCC---------CCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            88999999         77 777776 589999999999887654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=3e-13  Score=117.01  Aligned_cols=236  Identities=5%  Similarity=-0.059  Sum_probs=157.0

Q ss_pred             cEEEEEEeCC-EEEE-E-EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226          134 MVVAMEVSHD-RVYA-A-YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY  210 (434)
Q Consensus       134 ~v~~l~~~~~-~l~~-~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  210 (434)
                      ...+++++++ .+++ + ..++.|.+||........ ..                     ..+...+.++++.+++++++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~---------------------~~~~~~p~~i~~~~~g~l~v   82 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LP---------------------FNGLYQPQGLAVDGAGTVYV   82 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CC---------------------CCSCCSCCCEEECTTCCEEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Ee---------------------eCCcCCcceeEECCCCCEEE
Confidence            6788999886 5555 5 567899999865332111 00                     02334678899999988665


Q ss_pred             EEecCCcEEEEEcCCCeeEEEcc-cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEE
Q 046226          211 SASLDKTIKVWRIRDSKCIETIQ-AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKT  288 (434)
Q Consensus       211 s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  288 (434)
                      +.. ++.|.+||....... .+. .....+.++++.+++ ++++...++.|.+|+...  .  .  ...........+..
T Consensus        83 ~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~--~--~--~~~~~~~~~~~p~~  154 (270)
T 1rwi_B           83 TDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS--K--T--QTVLPFTGLNDPDG  154 (270)
T ss_dssp             EET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC--C--S--CEECCCCSCCSCCC
T ss_pred             EcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC--c--e--eEeeccccCCCcee
Confidence            555 889999998765433 332 233578899999998 666666788999997541  1  1  11111222346788


Q ss_pred             EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEE
Q 046226          289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLA  366 (434)
Q Consensus       289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (434)
                      ++++++++++++...++.|.+||.........    ...+...+.+++++  |.++++...++.|.+|+.....   ...
T Consensus       155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~----~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~  227 (270)
T 1rwi_B          155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL----PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STV  227 (270)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEEC----CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEE
T ss_pred             EEEeCCCCEEEEECCCCEEEEEecCCCceEee----cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---cee
Confidence            99999999777777789999999764332211    11222456777776  5566666678899999987642   222


Q ss_pred             EeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       367 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ....+...+.++++.++         |.++++...++.|+++++...+.
T Consensus       228 ~~~~~~~~p~~i~~~~~---------g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          228 LPFTGLNTPLAVAVDSD---------RTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CCCCSCSCEEEEEECTT---------CCEEEEEGGGTEEEEECCCGGGS
T ss_pred             eccCCCCCceeEEECCC---------CCEEEEECCCCEEEEEcCCCccc
Confidence            22233356889999988         88889999999999999886653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.61  E-value=7.9e-13  Score=117.82  Aligned_cols=241  Identities=10%  Similarity=0.027  Sum_probs=159.8

Q ss_pred             cEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEE-cCCeEEEeecCCCCCceeeEe
Q 046226           94 QILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAY-GDGKIRVWRSTWDNGVKHVKL  170 (434)
Q Consensus        94 ~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s-~dg~i~vwd~~~~~~~~~~~~  170 (434)
                      ....+++ ++.++++...++.|.+||..+++.+.++.. ......++++++ .++++. .++.|.+||..+.+....+..
T Consensus        45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~  123 (328)
T 3dsm_A           45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC  123 (328)
T ss_dssp             CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence            4567777 455555566679999999999999888853 456889999665 777776 789999999987655444432


Q ss_pred             eeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe--cCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC
Q 046226          171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS--LDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG  248 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (434)
                      ...                 .+.......+++  ++..++++.  .++.|.++|+.+++.+..+... .....+.+++++
T Consensus       124 g~~-----------------~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG  183 (328)
T 3dsm_A          124 PDM-----------------DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYN  183 (328)
T ss_dssp             TTC-----------------CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTS
T ss_pred             CCc-----------------cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCC
Confidence            100                 011124456666  355555554  4889999999999988877643 345688999999


Q ss_pred             -eEEEEeCC----------CeEEEEecccccCcceeEEEEEeccc-ccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          249 -VLYSASDD----------ATVRVWRRYFYSENQLHTLILTLTAK-YSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       249 -~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                       +++++..+          +.|.++|...      .+....+... ......++++|++++|+++..  .|.+||..+..
T Consensus       184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~t------~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          184 KMWTITDGGYEGSPYGYEAPSLYRIDAET------FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADR  255 (328)
T ss_dssp             EEEEEBCCBCTTCSSCBCCCEEEEEETTT------TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSS
T ss_pred             CEEEEECCCccCCccccCCceEEEEECCC------CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCc
Confidence             44444443          7899999761      1222222211 236889999999999988765  89999986544


Q ss_pred             ccccccCcccCcccceEEEEee---CCEEEEe----cCCCcEEEEeccCCCceeeEEEee
Q 046226          317 AQLQYGGALQGHTHAVMCLASV---ANYVISG----SADSTSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       317 ~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~  369 (434)
                      ....  ...........+++++   +.++++.    ..++.|.+||.. +   +.+..+.
T Consensus       256 ~~~~--~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g---~~~~~i~  309 (328)
T 3dsm_A          256 VPVR--PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G---KLIDEFY  309 (328)
T ss_dssp             CCSS--CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C---CEEEEEE
T ss_pred             eeee--eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C---CEEEEEE
Confidence            3211  1111123456777775   3455665    578999999998 5   4555543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=6.4e-13  Score=114.96  Aligned_cols=234  Identities=6%  Similarity=-0.021  Sum_probs=155.6

Q ss_pred             cEEEEEE--cCCEEE-EEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeE
Q 046226           94 QILCIAV--GNGFIY-TGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus        94 ~v~~~~~--~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~  169 (434)
                      ...++++  ++++++ +...++.|.+||..+.........+...+.+++++++ .++++..++.|.+||....... .+.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~-~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEe-eee
Confidence            5677888  677666 4467899999997665433322233356788999886 5666666889999997643221 110


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-  248 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  248 (434)
                                           ......+..+++.++++++++...++.|.+|+..+.............+.++++.+++ 
T Consensus       104 ---------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  162 (270)
T 1rwi_B          104 ---------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  162 (270)
T ss_dssp             ---------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC
T ss_pred             ---------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC
Confidence                                 0133568899999999877777778899999876554433333333467899999988 


Q ss_pred             eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226          249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      ++++...++.|.+||...   .   ............+..++++++|.++++...++.|.+||........    ....+
T Consensus       163 l~v~~~~~~~i~~~~~~~---~---~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~----~~~~~  232 (270)
T 1rwi_B          163 VYVTDTDNNRVVKLEAES---N---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV----LPFTG  232 (270)
T ss_dssp             EEEEEGGGTEEEEECTTT---C---CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE----CCCCS
T ss_pred             EEEEECCCCEEEEEecCC---C---ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee----eccCC
Confidence            566666678999999761   1   1111122233568899999999877777778999999975432211    11122


Q ss_pred             ccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226          329 THAVMCLASV--ANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       329 ~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ...+.+++++  |+++++...++.|++|++...
T Consensus       233 ~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          233 LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            3456777775  678888888999999998765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=1.2e-12  Score=115.02  Aligned_cols=240  Identities=8%  Similarity=-0.040  Sum_probs=156.6

Q ss_pred             EEEeeccccEEEEEE--cCC-EEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEc-CCeEEEeecC
Q 046226           86 SSVLKKDGQILCIAV--GNG-FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYG-DGKIRVWRST  160 (434)
Q Consensus        86 ~~~~~h~~~v~~~~~--~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~-dg~i~vwd~~  160 (434)
                      ..+..+.....+++|  +++ +++++..++.|..||..++  ...+..+...+.+++++++ .++++.. ++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            334456667788999  676 8888999999999999877  5556667788999999987 4555554 6899999986


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE----Eec-------------CCcEEEEEc
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS----ASL-------------DKTIKVWRI  223 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~  223 (434)
                      +++........  .                ......+.+++++|+|+++++    |+.             .+.|..++.
T Consensus        99 ~g~~~~~~~~~--~----------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~  160 (296)
T 3e5z_A           99 GGEWESIADSF--E----------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP  160 (296)
T ss_dssp             TCCEEEEECEE--T----------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred             CCcEEEEeecc--C----------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence            55432211000  0                012235678999999998887    331             345666665


Q ss_pred             CCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226          224 RDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  302 (434)
                      . ++ +..+..+......++|+|++ .+++.+.++.|.+||+..  ..........+..+...+..++++++|++.++. 
T Consensus       161 ~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~--~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-  235 (296)
T 3e5z_A          161 D-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA--RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-  235 (296)
T ss_dssp             T-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS--SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred             C-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC--CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence            4 44 34444566678899999999 667777889999999861  111101111113344567789999999866665 


Q ss_pred             CCCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccC
Q 046226          303 TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       303 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~  358 (434)
                       ++.|.+||....     ....+..+.. +.+++|.   ++.|++++.++ +.-++..+
T Consensus       236 -~~~v~~~~~~g~-----~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          236 -GDGVHVLTPDGD-----ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             -TTEEEEECTTSC-----EEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             -CCeEEEECCCCC-----EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence             889999997421     1122334444 6777773   45777777653 44445544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=1.5e-12  Score=112.63  Aligned_cols=237  Identities=8%  Similarity=-0.004  Sum_probs=162.3

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCC-ccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT-SMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG  178 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (434)
                      .+++|++++.|+.|.+||.++++.+.++..+. ..+.++.+.|+ .++. +.++.|..||. +++.+..+..        
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~--------   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAA--------   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEEC--------
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcC--------
Confidence            36789999999999999999999999998776 47889999998 4444 66888999998 5666555532        


Q ss_pred             ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEccc------CccCeEEEEEcCCC-eE
Q 046226          179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIETIQA------HSEPINALVVADDG-VL  250 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-~l  250 (434)
                                   +....+.++.+.++|+++++.+. ++.|..+|. +++.+..+..      +......+.+.+++ ++
T Consensus        74 -------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l  139 (276)
T 3no2_A           74 -------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYL  139 (276)
T ss_dssp             -------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred             -------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence                         12345788899999999999887 778888886 6777776642      22345566788888 88


Q ss_pred             EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC-cccC-c
Q 046226          251 YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG-ALQG-H  328 (434)
Q Consensus       251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~-~  328 (434)
                      ++...++.|..||..   +..    +..+... ..+.++...++++.++++..++.|..+|..+.+...++.. .+.+ .
T Consensus       140 v~~~~~~~v~~~d~~---G~~----~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~  211 (276)
T 3no2_A          140 VPLFATSEVREIAPN---GQL----LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ  211 (276)
T ss_dssp             EEETTTTEEEEECTT---SCE----EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred             EEecCCCEEEEECCC---CCE----EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence            888899999999965   222    2222222 3456678889999999999889999999876655554431 1111 1


Q ss_pred             ccceEEEEe--eCCEEEEecCC--------CcEEEEeccCCCceeeEEEeecc
Q 046226          329 THAVMCLAS--VANYVISGSAD--------STSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       329 ~~~v~~~~~--~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                      ...+..+..  +|+.+++....        +..+++.+...+  +.+-++..+
T Consensus       212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g--~~~W~~~~~  262 (276)
T 3no2_A          212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG--KVVWQLNDK  262 (276)
T ss_dssp             CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS--BEEEEECCT
T ss_pred             ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCC--CEEEEecCc
Confidence            122444444  46666665311        234566664322  455555443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.59  E-value=3.2e-14  Score=130.49  Aligned_cols=251  Identities=7%  Similarity=-0.094  Sum_probs=155.0

Q ss_pred             EecCCCceeEeeccCCCcc-----EEEEEEeCC--EEEEEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226          116 IWKQPEFTECGRLKAKTSM-----VVAMEVSHD--RVYAAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV  185 (434)
Q Consensus       116 iwd~~~~~~~~~~~~~~~~-----v~~l~~~~~--~l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
                      .+|..++..+..+..+...     +..++|+|+  .|+.+..   +..|.+||+..++.....                 
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-----------------   76 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-----------------   76 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-----------------
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-----------------
Confidence            4477788777777665443     677889997  5555544   246888887654321111                 


Q ss_pred             ccccccCcCCC-eEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE-------------------EEEc
Q 046226          186 GKDKMMKHMGP-ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA-------------------LVVA  245 (434)
Q Consensus       186 ~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~~  245 (434)
                            .+... ...+.|+|++++|+.++.++.|++||+.+++.......+......                   +.++
T Consensus        77 ------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s  150 (396)
T 3c5m_A           77 ------EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ  150 (396)
T ss_dssp             ------CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred             ------cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccC
Confidence                  12222 333789999999999998999999999988765555544432222                   2446


Q ss_pred             CCC-eEEEE-----eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCC------CeEEEEEc
Q 046226          246 DDG-VLYSA-----SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTD------GYIHYWHK  312 (434)
Q Consensus       246 ~~~-~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~  312 (434)
                      |++ .++..     ..+..|.+||+..   .....    +..+...+..+.|+| +++.|+..+.+      ..|.+||+
T Consensus       151 pdg~~~~~~~~~~~~~~~~l~~~d~~~---g~~~~----~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (396)
T 3c5m_A          151 PLTSWEKFAEFYHTNPTCRLIKVDIET---GELEV----IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNE  223 (396)
T ss_dssp             CCCSHHHHHHHHHTCCCEEEEEEETTT---CCEEE----EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEET
T ss_pred             CCCcceeeeeeccCCCcceEEEEECCC---CcEEe----eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEEC
Confidence            666 33322     4567899999862   11111    113456788999999 78877666543      36888887


Q ss_pred             CcccccccccCcccCc-ccceEEEEee--CCEEEEecCC-----CcEEEEeccCCCceeeEEEeeccccceeEEEEee-c
Q 046226          313 GWFSAQLQYGGALQGH-THAVMCLASV--ANYVISGSAD-----STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL-G  383 (434)
Q Consensus       313 ~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~  383 (434)
                      ...... .+   .... ...+..+.|+  |++|+.++.+     +.|++||+.++.. ..+..+.+    .. +.|+| +
T Consensus       224 ~~~~~~-~l---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~----~~-~~~s~~d  293 (396)
T 3c5m_A          224 DGSNVR-KI---KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-EEVMVMPP----CS-HLMSNFD  293 (396)
T ss_dssp             TSCCCE-ES---SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-EEEEECCS----EE-EEEECSS
T ss_pred             CCCcee-Ee---eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-EEeeeCCC----CC-CCccCCC
Confidence            533211 11   1111 2346666665  6666665433     4599999987632 23333322    22 78888 7


Q ss_pred             ccCCCCCCcccEEEEee----------------cCCeEEEEecCCCCc
Q 046226          384 RFGEETEDEYCTICTGS----------------LDGVLKMWRVTRPKS  415 (434)
Q Consensus       384 ~~~~~~~~~~~~l~s~~----------------~Dg~v~iw~~~~~~~  415 (434)
                               |++++.++                .++.|++||+.+++.
T Consensus       294 ---------g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          294 ---------GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             ---------SSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             ---------CceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence                     78887754                347899999987653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.57  E-value=2.8e-12  Score=114.41  Aligned_cols=281  Identities=9%  Similarity=-0.047  Sum_probs=177.4

Q ss_pred             cCCEEEEEeC-----CCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------cCCeEEEeecCCCC
Q 046226          101 GNGFIYTGSD-----SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------GDGKIRVWRSTWDN  163 (434)
Q Consensus       101 ~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~dg~i~vwd~~~~~  163 (434)
                      +++.+++...     ++.|.+.|..+++.+.++.....+ . ++++|+  .++++.          .++.|.+||..+.+
T Consensus        43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~  120 (386)
T 3sjl_D           43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL  120 (386)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence            5566666654     679999999999999998866665 4 999998  566654          36789999998887


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPINA  241 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~  241 (434)
                      .+..+.+..-.    .           .........++|+|||++++++..  ++.|.++|+.+++.+.++....    |
T Consensus       121 v~~~I~v~~g~----r-----------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~  181 (386)
T 3sjl_D          121 PTADIELPDAP----R-----------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C  181 (386)
T ss_dssp             EEEEEEETTCC----C-----------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E
T ss_pred             EEEEEECCCcc----c-----------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c
Confidence            76666431100    0           001224567899999999998864  6899999999999998886432    1


Q ss_pred             EEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeE-EEEEe-cCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          242 LVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVK-TLTLT-LDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       242 ~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      ..+.|.+  .+++.+.||.+.+.++...... .......+.....++. ...|. ++|++++ .+.+|.|++.|+.....
T Consensus       182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v-~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~  259 (386)
T 3sjl_D          182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP-EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA  259 (386)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCC-EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred             ceeecCCCceeEEECCCCCEEEEECCCCCeE-EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc
Confidence            2223433  6778888999999987621111 1100001111112221 23554 5665555 55589999999864432


Q ss_pred             cccccCc----------ccCcccceEEEEeeCCEEEEecC----------CCcEEEEeccCCCceeeEEEeeccccceeE
Q 046226          318 QLQYGGA----------LQGHTHAVMCLASVANYVISGSA----------DSTSRVWAREQDGRHTMLAVLVGHRGPIRC  377 (434)
Q Consensus       318 ~~~~~~~----------~~~~~~~v~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  377 (434)
                      .......          .........++..+++.++....          .+.|.++|+.+.   +.+..+.. ...+..
T Consensus       260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---kv~~~i~v-g~~~~~  335 (386)
T 3sjl_D          260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDS  335 (386)
T ss_dssp             EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECE
T ss_pred             eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---eEEEEEEC-CCCcce
Confidence            1110000          00111123445555665555432          257999999987   45555443 236789


Q ss_pred             EEEeecccCCCCCCccc-EEEE-eecCCeEEEEecCCCCccc
Q 046226          378 AIAFLGRFGEETEDEYC-TICT-GSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       378 ~~~~~~~~~~~~~~~~~-~l~s-~~~Dg~v~iw~~~~~~~~~  417 (434)
                      ++++++         ++ +|++ ...++.|.++|..+++.+.
T Consensus       336 lavs~D---------~~~~ly~tn~~~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          336 INVSQD---------EKPLLYALSTGDKTLYIHDAESGEELR  368 (386)
T ss_dssp             EEECSS---------SSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEECCC---------CCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence            999999         65 5555 4569999999999988654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=1e-10  Score=102.55  Aligned_cols=273  Identities=9%  Similarity=0.008  Sum_probs=178.6

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEe-eccCCCccEEEEEEeCC-EEEEEEc-CCeEEEeecCCCCCc
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECG-RLKAKTSMVVAMEVSHD-RVYAAYG-DGKIRVWRSTWDNGV  165 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~s~-dg~i~vwd~~~~~~~  165 (434)
                      ....+.++++  +|++.++...++.|.+||.. ++... .+..+...+.++++.++ .++.+.. ++.|..||.. ++. 
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-   94 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-   94 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence            4567889998  67777776678999999987 44332 23334467899999886 5555554 7889999876 322 


Q ss_pred             eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE-EcccCccCeEEEEE
Q 046226          166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE-TIQAHSEPINALVV  244 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~  244 (434)
                      ..+..                    ......+.++++.++++++++...++.|..+|.. ++... .+......+.++++
T Consensus        95 ~~~~~--------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~  153 (300)
T 2qc5_A           95 TEYPL--------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL  153 (300)
T ss_dssp             EEEEC--------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred             EEecC--------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence            22211                    0133568899999999888777768899999987 55442 23334567899999


Q ss_pred             cCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC
Q 046226          245 ADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG  323 (434)
Q Consensus       245 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  323 (434)
                      .+++ ++++...++.|..+|..   .. ..  ..........+..+++++++++.++....+.|.+||... ... ..  
T Consensus       154 d~~g~l~v~~~~~~~i~~~~~~---g~-~~--~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~~-~~--  223 (300)
T 2qc5_A          154 GSDNALWFTENQNNSIGRITNT---GK-LE--EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-EIS-EY--  223 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECTT---CC-EE--EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CEE-EE--
T ss_pred             CCCCCEEEEecCCCeEEEECCC---Cc-EE--EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-cEE-EE--
Confidence            9988 55555557889999863   11 11  122233445688999999998777777778899999731 111 11  


Q ss_pred             cccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226          324 ALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL  401 (434)
Q Consensus       324 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  401 (434)
                      ....+...+.++.++  |++.++...++.|..||.. + . .....+......+.++++.++         |.+.++.. 
T Consensus       224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g-~-~~~~~~~~~~~~~~~i~~~~~---------g~l~v~~~-  290 (300)
T 2qc5_A          224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-N-T-IQEYQLQTENAEPHGITFGKD---------GSVWFALK-  290 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S-C-EEEEECCSTTCCCCCEEECTT---------SCEEEECS-
T ss_pred             ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-C-c-EEEEECCccCCccceeEeCCC---------CCEEEEcc-
Confidence            122334456777775  5566666667899999983 3 1 122223334556788888887         77666655 


Q ss_pred             CCeEEEEecC
Q 046226          402 DGVLKMWRVT  411 (434)
Q Consensus       402 Dg~v~iw~~~  411 (434)
                      . .|..++.+
T Consensus       291 ~-~i~~~~p~  299 (300)
T 2qc5_A          291 C-KIGKLNLN  299 (300)
T ss_dssp             S-EEEEEEEC
T ss_pred             C-ceEEeCCC
Confidence            4 66666643

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.55  E-value=1.3e-12  Score=129.61  Aligned_cols=273  Identities=12%  Similarity=0.003  Sum_probs=163.4

Q ss_pred             EcCCEEEEEeCCCe---EEEec--CC---CceeEee------ccCCCccEEEEEEeCC--EEEEEEcC-----CeEEEee
Q 046226          100 VGNGFIYTGSDSNV---IRIWK--QP---EFTECGR------LKAKTSMVVAMEVSHD--RVYAAYGD-----GKIRVWR  158 (434)
Q Consensus       100 ~~~~~l~tg~~dg~---i~iwd--~~---~~~~~~~------~~~~~~~v~~l~~~~~--~l~~~s~d-----g~i~vwd  158 (434)
                      .+|++++....++.   -.+|.  ..   .++....      -.+|...+..++|+||  .|+.++.+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            47777766554432   44453  33   3322221      1223346889999998  56655443     3699999


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCc--------------EEEEEcC
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKT--------------IKVWRIR  224 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~--------------i~vwd~~  224 (434)
                      +.+++.....                       .+...+..++|+|| +.|+.+..++.              |++|++.
T Consensus       196 l~tg~~~~~~-----------------------~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg  251 (741)
T 1yr2_A          196 VADGKPLADE-----------------------LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLG  251 (741)
T ss_dssp             TTTCCEEEEE-----------------------EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETT
T ss_pred             CCCCCCCCcc-----------------------CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECC
Confidence            9877653221                       01112357899999 98888876654              8999997


Q ss_pred             CCe----eEEEcccCccCeEEEEEcCCC-eEEEEeCC-----CeEEEEecccccCcceeEEEEEecccccCeEEEEEecC
Q 046226          225 DSK----CIETIQAHSEPINALVVADDG-VLYSASDD-----ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD  294 (434)
Q Consensus       225 ~~~----~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  294 (434)
                      +++    .+.....+...+..+.|+||| +|+..+.+     ..|.+||+...  ...  ....+..+....... ++++
T Consensus       252 t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~--~~~--~~~~l~~~~~~~~~~-~~~d  326 (741)
T 1yr2_A          252 TPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG--KIG--PVTALIPDLKAQWDF-VDGV  326 (741)
T ss_dssp             SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT--EEC--CCEEEECSSSSCEEE-EEEE
T ss_pred             CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC--CCc--ccEEecCCCCceEEE-Eecc
Confidence            765    232223333468899999999 66666543     38999998621  001  011222333334444 3488


Q ss_pred             CCEEEEEcC----CCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEee
Q 046226          295 DGLLYGGCT----DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       295 ~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  369 (434)
                      |+.|+..+.    ++.|.+||+....  ......+..+...+..+++.++ ++++...|+..+||.+...+  .....+.
T Consensus       327 g~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g--~~~~~l~  402 (741)
T 1yr2_A          327 GDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDG--KPAGAVS  402 (741)
T ss_dssp             TTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTS--CEEEECB
T ss_pred             CCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCC--Cceeecc
Confidence            888887765    4569999986532  1111122344445666777655 67777889988887665211  3444454


Q ss_pred             c-cccceeEEEEeecccCCCCCCcccEEE----EeecCCeEEEEecCCCC
Q 046226          370 G-HRGPIRCAIAFLGRFGEETEDEYCTIC----TGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       370 ~-h~~~v~~~~~~~~~~~~~~~~~~~~l~----s~~~Dg~v~iw~~~~~~  414 (434)
                      . +.+.+..+.++|+         +..|+    +....++|++||+.+++
T Consensus       403 ~~~~~~v~~~~~s~d---------~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          403 LPGIGSASGLSGRPG---------DRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             CSSSCEEEEEECCBT---------CSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCCCeEEEEeecCCC---------CCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            3 3667888889887         55444    33356899999998765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.54  E-value=2e-12  Score=116.25  Aligned_cols=185  Identities=10%  Similarity=0.036  Sum_probs=123.1

Q ss_pred             CeEEEEEecCCCEEEEEecC---C--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC--------------
Q 046226          196 PITSIAINVSDDTLYSASLD---K--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD--------------  255 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~d---g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~--------------  255 (434)
                      .+..++|+|||++|+.++.+   +  .|.+||+.+++.......+ . +..+.|+|++ .|+.++.              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            47789999999999887654   2  4888899888766555433 3 9999999999 6666653              


Q ss_pred             -------------CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-------eEEEEEcCcc
Q 046226          256 -------------DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-------YIHYWHKGWF  315 (434)
Q Consensus       256 -------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~  315 (434)
                                   ...|.+||+..   ......+   .. . .+..+.|+|+| +++++..++       ...||.+...
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~---~~~~~~l---~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~  208 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTES---EEVIEEF---EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG  208 (347)
T ss_dssp             CCC---------CEEEEEEEETTT---TEEEEEE---EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred             ceeecCcccccCccceEEEEECCC---CeEEeee---cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC
Confidence                         25688888761   1110111   12 2 67889999999 777775542       3455544311


Q ss_pred             cccccccCcccCcccceEEEEeeCCEEEEecCC--------CcEEEEeccCCCceeeEEEeeccccceeE-EEEeecccC
Q 046226          316 SAQLQYGGALQGHTHAVMCLASVANYVISGSAD--------STSRVWAREQDGRHTMLAVLVGHRGPIRC-AIAFLGRFG  386 (434)
Q Consensus       316 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~  386 (434)
                        ...   .+..+ ..+..++.+|++|+.++.+        ..|.+||  ++   ........|...+.. +.|+ +   
T Consensus       209 --~~~---~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-d---  273 (347)
T 2gop_A          209 --KEE---KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-G---  273 (347)
T ss_dssp             --EEE---EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-T---
T ss_pred             --ceE---EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-C---
Confidence              111   11123 4455567788877776644        3677787  43   333344566777886 8888 7   


Q ss_pred             CCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          387 EETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       387 ~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                            + ++++++.|+.++|| +.+++
T Consensus       274 ------g-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          274 ------K-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             ------E-EEEEEEETTEEEEE-EESSS
T ss_pred             ------c-EEEEEecCCcEEEE-EcCCc
Confidence                  8 89999999999999 88443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.52  E-value=6.5e-12  Score=114.14  Aligned_cols=282  Identities=9%  Similarity=-0.044  Sum_probs=180.9

Q ss_pred             cCCEEEEEeC-C----CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------cCCeEEEeecCCCC
Q 046226          101 GNGFIYTGSD-S----NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------GDGKIRVWRSTWDN  163 (434)
Q Consensus       101 ~~~~l~tg~~-d----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~dg~i~vwd~~~~~  163 (434)
                      +++.+++... +    +.|.++|..+++.+.++.....+  .++++|+  .++++.          .++.|.++|..+.+
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            4555555444 2    79999999999999998876666  8999998  566664          46789999998887


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPINA  241 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~  241 (434)
                      .+..+.+.....               .........+.|+||+++++++..  ++.|.+.|+.+++.+.++.....    
T Consensus       161 vv~~I~v~g~~r---------------~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----  221 (426)
T 3c75_H          161 PIADIELPDAPR---------------FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----  221 (426)
T ss_dssp             EEEEEEETTCCC---------------CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----
T ss_pred             EEEEEECCCccc---------------cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----
Confidence            776664310000               001123456899999999999874  57899999999999888764321    


Q ss_pred             EEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCe-EEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226          242 LVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV-KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       242 ~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  318 (434)
                      ....|++  .+++.+.||.+.+.+..  ...........+.....++ ..+.+.+++..++.....+.|.+.|+......
T Consensus       222 ~~~~p~g~~~~v~~~~dG~~~~V~~~--~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~  299 (426)
T 3c75_H          222 YHIFPASPTVFYMNCRDGSLARVDFA--DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT  299 (426)
T ss_dssp             EEEEEEETTEEEEEETTSSEEEEECC--TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred             eeeccCCCcEEEEEcCCCCEEEEECC--CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE
Confidence            2333433  56667778888777763  1111110000111111121 23567888888877788899999998543211


Q ss_pred             ccccCcc----------cCcccceEEEEeeCCEEEEec----------CCCcEEEEeccCCCceeeEEEeeccccceeEE
Q 046226          319 LQYGGAL----------QGHTHAVMCLASVANYVISGS----------ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCA  378 (434)
Q Consensus       319 ~~~~~~~----------~~~~~~v~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~  378 (434)
                      ......+          .........+..+++.+++..          .++.|.++|+.+.   +.+..+..- .....+
T Consensus       300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~I~vg-~~P~gi  375 (426)
T 3c75_H          300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINKIELG-HEIDSI  375 (426)
T ss_dssp             ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEEE-EEECEE
T ss_pred             EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---eEEEEEECC-CCcCeE
Confidence            1000000          001111235666667555543          2357999999988   555555432 247889


Q ss_pred             EEeecccCCCCCCccc-EEEEee-cCCeEEEEecCCCCcccc
Q 046226          379 IAFLGRFGEETEDEYC-TICTGS-LDGVLKMWRVTRPKSSCG  418 (434)
Q Consensus       379 ~~~~~~~~~~~~~~~~-~l~s~~-~Dg~v~iw~~~~~~~~~~  418 (434)
                      +|+|+         ++ ++++.. .++.|.++|+.+.+.+..
T Consensus       376 a~spD---------g~~~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          376 NVSQD---------AEPLLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             EECCS---------SSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEccC---------CCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence            99999         77 777777 599999999999987644

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.52  E-value=3e-11  Score=109.91  Aligned_cols=269  Identities=11%  Similarity=0.092  Sum_probs=172.3

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCC----------CccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAK----------TSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKL  170 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~----------~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~  170 (434)
                      .++.|++++.++.|..+|.++++.+......          ......+....+.+++++.++.|..+|..+++.......
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            5778888888999999999999988765542          222344556677999999999999999988876655532


Q ss_pred             eeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCe-----EEEEEc
Q 046226          171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI-----NALVVA  245 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~  245 (434)
                      ...                  ....+    ..  .+..+++++.++.|..+|..+++.+..+.......     ......
T Consensus       132 ~~~------------------~~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~  187 (376)
T 3q7m_A          132 AGE------------------ALSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA  187 (376)
T ss_dssp             SSC------------------CCSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE
T ss_pred             CCc------------------eEcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE
Confidence            110                  01111    11  25578888889999999999999888776432211     122222


Q ss_pred             CCCeEEEEeCCCeEEEEecccccCcceeEEEEEeccccc---CeEEEEEec--CCCEEEEEcCCCeEEEEEcCccccccc
Q 046226          246 DDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS---PVKTLTLTL--DDGLLYGGCTDGYIHYWHKGWFSAQLQ  320 (434)
Q Consensus       246 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~  320 (434)
                       ++.++.+..++.|..+|..  .+...............   .+..+...|  .+..+++++.++.+..+|..+.+....
T Consensus       188 -~~~v~~g~~~g~l~~~d~~--tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~  264 (376)
T 3q7m_A          188 -FGAAVVGGDNGRVSAVLME--QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK  264 (376)
T ss_dssp             -TTEEEECCTTTEEEEEETT--TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             -CCEEEEEcCCCEEEEEECC--CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee
Confidence             5578888889999999986  22222221110000000   000000111  356788888899999999876654443


Q ss_pred             ccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeec-cccceeEEEEeecccCCCCCCcccEEEEe
Q 046226          321 YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG-HRGPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                      ..  .    .....+...++.++.++.++.|..+|..++   +.+..... ....+......           +..|+.+
T Consensus       265 ~~--~----~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~-----------~~~l~v~  324 (376)
T 3q7m_A          265 RE--L----GSVNDFIVDGNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVLY-----------NGNLVVG  324 (376)
T ss_dssp             EC--C----CCEEEEEEETTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEEE-----------TTEEEEE
T ss_pred             cc--C----CCCCCceEECCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEEE-----------CCEEEEE
Confidence            21  1    224456677888999999999999999988   44444331 12223333333           4578888


Q ss_pred             ecCCeEEEEecCCCCcc
Q 046226          400 SLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       400 ~~Dg~v~iw~~~~~~~~  416 (434)
                      +.+|.|..+|..+++..
T Consensus       325 ~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          325 DSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             CTTSEEEEEETTTCCEE
T ss_pred             eCCCeEEEEECCCCcEE
Confidence            99999999999988754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.51  E-value=1.3e-11  Score=122.01  Aligned_cols=207  Identities=8%  Similarity=-0.019  Sum_probs=137.2

Q ss_pred             CcCCCeEEEEEecCCCEEEEEecCC-----cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCe-------
Q 046226          192 KHMGPITSIAINVSDDTLYSASLDK-----TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDAT-------  258 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-------  258 (434)
                      +|...+..++|+|||++|+.+..++     .|++||+.+++.+.....+ ..+..++|+||+ .|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3445688999999999998776543     8999999999876643322 236789999999 7777777655       


Q ss_pred             ---------EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-----CCeEEEEEcCc------cccc
Q 046226          259 ---------VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-----DGYIHYWHKGW------FSAQ  318 (434)
Q Consensus       259 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~  318 (434)
                               |++|++..  .......+.....+...+..+.|+|||++|+.++.     +..|++||+..      ....
T Consensus       201 ~~~~~~~~~v~~~~l~t--~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGT--DQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             CCCCCCCCEEEEEETTS--CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ccccCCCCEEEEEECCC--CcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence                     99999862  22112233333334556789999999999888764     67899999864      2111


Q ss_pred             ccccCcccCcccce-EEEEeeCCEEEEecCC----CcEEEEeccCCCceeeEEEeecccc--ceeEEEEeecccCCCCCC
Q 046226          319 LQYGGALQGHTHAV-MCLASVANYVISGSAD----STSRVWAREQDGRHTMLAVLVGHRG--PIRCAIAFLGRFGEETED  391 (434)
Q Consensus       319 ~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~  391 (434)
                      ..   .+..+...+ ..+..+|+.|+..+.+    +.|.+||+.++.. .....+..|..  .+..++|+++        
T Consensus       279 ~~---~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------  346 (710)
T 2xdw_A          279 WV---KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRS--------  346 (710)
T ss_dssp             CE---EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCEEEEEEEETT--------
T ss_pred             eE---EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcC--------
Confidence            11   122233222 3355678866655543    3699999987632 12234444544  6778888866        


Q ss_pred             cccEEEEeecCCe--EEEEecCCCC
Q 046226          392 EYCTICTGSLDGV--LKMWRVTRPK  414 (434)
Q Consensus       392 ~~~~l~s~~~Dg~--v~iw~~~~~~  414 (434)
                       +.++++...|+.  |.+|++.+++
T Consensus       347 -~~lv~~~~~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          347 -NFLVLCYLHDVKNTLQLHDLATGA  370 (710)
T ss_dssp             -TEEEEEEEETTEEEEEEEETTTCC
T ss_pred             -CEEEEEEEECCEEEEEEEECCCCC
Confidence             788999999985  5556665555

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.50  E-value=5.9e-11  Score=107.95  Aligned_cols=266  Identities=11%  Similarity=0.078  Sum_probs=169.3

Q ss_pred             EEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226           98 IAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus        98 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      ...++..+++++.++.|..+|..+++.+.................+.+++++.++.|..+|..+++............  
T Consensus        99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~--  176 (376)
T 3q7m_A           99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL--  176 (376)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred             ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce--
Confidence            344788889999999999999999998877655433223334556789999999999999998887766553211000  


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC----------eEEEEEcCC
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP----------INALVVADD  247 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----------v~~~~~~~~  247 (434)
                          .       ......+    ...  +..++.+..++.|..+|..+++.+.........          +.......+
T Consensus       177 ----~-------~~~~~~~----~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~  239 (376)
T 3q7m_A          177 ----S-------LRGESAP----TTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN  239 (376)
T ss_dssp             -------------CCCCCC----EEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET
T ss_pred             ----e-------ecCCCCc----EEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC
Confidence                0       0001111    111  457888888999999999999988776532110          111111124


Q ss_pred             CeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC
Q 046226          248 GVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG  327 (434)
Q Consensus       248 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  327 (434)
                      +.++.++.++.+..+|..  .+....    ...  ......+..  ++..+++++.++.|..+|..+.+....... .  
T Consensus       240 ~~v~~~~~~g~l~~~d~~--tG~~~w----~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~-~--  306 (376)
T 3q7m_A          240 GVVFALAYNGNLTALDLR--SGQIMW----KRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD-L--  306 (376)
T ss_dssp             TEEEEECTTSCEEEEETT--TCCEEE----EEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT-T--
T ss_pred             CEEEEEecCcEEEEEECC--CCcEEe----ecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc-c--
Confidence            578888889999999986  222111    111  122333333  467888888899999999876655443321 1  


Q ss_pred             cccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE-EEEeecccCCCCCCcccEEEEeecCCeEE
Q 046226          328 HTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC-AIAFLGRFGEETEDEYCTICTGSLDGVLK  406 (434)
Q Consensus       328 ~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~  406 (434)
                      ....+......+..|+.++.+|.|+++|..++   +.+.........+.. ....           +..|+.++.||.|+
T Consensus       307 ~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG---~~~~~~~~~~~~~~~~~~~~-----------~~~l~v~~~~G~l~  372 (376)
T 3q7m_A          307 LHRLLTSPVLYNGNLVVGDSEGYLHWINVEDG---RFVAQQKVDSSGFQTEPVAA-----------DGKLLIQAKDGTVY  372 (376)
T ss_dssp             TTSCCCCCEEETTEEEEECTTSEEEEEETTTC---CEEEEEECCTTCBCSCCEEE-----------TTEEEEEBTTSCEE
T ss_pred             CCCcccCCEEECCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCcceeCCEEE-----------CCEEEEEeCCCEEE
Confidence            11122333446788999999999999999988   455554443333332 2222           44688889999999


Q ss_pred             EEe
Q 046226          407 MWR  409 (434)
Q Consensus       407 iw~  409 (434)
                      .|+
T Consensus       373 ~~~  375 (376)
T 3q7m_A          373 SIT  375 (376)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            987

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.50  E-value=1.7e-12  Score=127.93  Aligned_cols=243  Identities=8%  Similarity=-0.066  Sum_probs=152.5

Q ss_pred             eccccEEEEEE--cCCEEE-----EEeCCCeEEEecCCCceeEeeccCCCccE--EEEEEeCC--EEEEEEcCCe-----
Q 046226           90 KKDGQILCIAV--GNGFIY-----TGSDSNVIRIWKQPEFTECGRLKAKTSMV--VAMEVSHD--RVYAAYGDGK-----  153 (434)
Q Consensus        90 ~h~~~v~~~~~--~~~~l~-----tg~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~l~~~~~--~l~~~s~dg~-----  153 (434)
                      +|...+..++|  +|++||     .|+.+..|++||+.+++.+.  ..+-..+  ..++|+||  .|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            35557888999  899988     45556799999999987651  1111222  67899998  7888887765     


Q ss_pred             --------EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC----cEEEE
Q 046226          154 --------IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK----TIKVW  221 (434)
Q Consensus       154 --------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~vw  221 (434)
                              |++|++.++........ .                 ...+...+..+.|+|||++|+.++.++    .|++|
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~-~-----------------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~  257 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVH-E-----------------RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWK  257 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEE-C-----------------CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEE
T ss_pred             ccCCCCCEEEEEECCCCchhceEEE-e-----------------cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEE
Confidence                    99999876643211110 0                 013556788999999999998877666    77888


Q ss_pred             EcCCCeeEEEcccCccCeEEEEEcCCCeEEEEe---CCCeEEEEecccccCcceeEEEEEeccc-ccCeEEEEEecCCCE
Q 046226          222 RIRDSKCIETIQAHSEPINALVVADDGVLYSAS---DDATVRVWRRYFYSENQLHTLILTLTAK-YSPVKTLTLTLDDGL  297 (434)
Q Consensus       222 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  297 (434)
                      |..+++ ...+..+...+....+.++++++...   .++.|.+||+....... ...  ....+ ...+..++++ ++.+
T Consensus       258 ~~~~~~-~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~--l~~~~~~~~l~~~~~~-~~~l  332 (695)
T 2bkl_A          258 RPGEKD-FRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARAS-WKE--IVPEDSSASLLSVSIV-GGHL  332 (695)
T ss_dssp             CTTCSS-CEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGG-CEE--EECCCSSCEEEEEEEE-TTEE
T ss_pred             cCCCCc-eEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccC-CeE--EecCCCCCeEEEEEEE-CCEE
Confidence            766554 34444455556666664433444433   25889999986221111 111  12222 3457788888 6778


Q ss_pred             EEEEcCCCeEEEEEcCcccccccccCcccCc-ccceEEEEee--CCEEE----EecCCCcEEEEeccCCC
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASV--ANYVI----SGSADSTSRVWAREQDG  360 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~----s~~~dg~i~iwd~~~~~  360 (434)
                      +++...|+..+||.+.......   ..+..+ ...+..++++  ++.++    +....+.|++||+.++.
T Consensus       333 v~~~~~dg~~~l~~~~~~g~~~---~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          333 SLEYLKDATSEVRVATLKGKPV---RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEEEETTEEEEEEEETTCCEE---EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEEECCEEEEEEEeCCCCee---EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8888899988888764211111   112222 4455556554  55554    33345789999998763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=5e-11  Score=105.42  Aligned_cols=241  Identities=8%  Similarity=-0.008  Sum_probs=151.1

Q ss_pred             ccEEEEEEeCC-EEEEE--------EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe
Q 046226          133 SMVVAMEVSHD-RVYAA--------YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN  203 (434)
Q Consensus       133 ~~v~~l~~~~~-~l~~~--------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  203 (434)
                      ....+++|+++ .++.+        ..++.|.+||..+++.. .+..   +              ...++...+.+++++
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~---~--------------~~~~~~~~~~~i~~~   79 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICK---P--------------EVNGYGGIPAGCQCD   79 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEEC---C--------------EETTEECCEEEEEEC
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEe---c--------------ccCCCCCCCceEEEe
Confidence            34678889876 45544        67899999997655432 1110   0              001244668899999


Q ss_pred             cC-CCEEEEEecCCcEEEEEcCCCeeEEE-ccc----CccCeEEEEEcCCC-eEEEEeCC---------------CeEEE
Q 046226          204 VS-DDTLYSASLDKTIKVWRIRDSKCIET-IQA----HSEPINALVVADDG-VLYSASDD---------------ATVRV  261 (434)
Q Consensus       204 ~~-~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~-~l~s~~~d---------------g~i~i  261 (434)
                      ++ +++++ ++..+.|.+||.. ++.... ...    ....+.++++.+++ ++++...+               +.|..
T Consensus        80 ~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           80 RDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             cCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence            98 65444 4445579999998 665433 221    12458899999999 55544444               45666


Q ss_pred             EecccccCcceeEEEEEecccccCeEEEEEe----cCCCEEEEE-cCCCeEEEEEcCc-ccc-cccccCcccCcc-cceE
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLT----LDDGLLYGG-CTDGYIHYWHKGW-FSA-QLQYGGALQGHT-HAVM  333 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~i~d~~~-~~~-~~~~~~~~~~~~-~~v~  333 (434)
                      ||..    ......    .........++++    ++++.|+++ ..++.|.+||+.. ... .......+..+. ..+.
T Consensus       158 ~~~~----g~~~~~----~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  229 (314)
T 1pjx_A          158 FTTD----GQMIQV----DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             ECTT----SCEEEE----EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             ECCC----CCEEEe----ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC
Confidence            6643    111111    1223456789999    998766555 5688999999752 110 001111223333 4456


Q ss_pred             EEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc-EEEEeecCCeEEEEec
Q 046226          334 CLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC-TICTGSLDGVLKMWRV  410 (434)
Q Consensus       334 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~iw~~  410 (434)
                      .++++  |+++++...++.|.+||..++   +.+..+..+...+.+++++++         +. ++++...++.|..|++
T Consensus       230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~i~~~~d---------g~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          230 GMDFDEDNNLLVANWGSSHIEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQ---------TKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCB---SCSEEEECSSSCEEEEEECTT---------SSEEEEEETTTTEEEEEEC
T ss_pred             ceEECCCCCEEEEEcCCCEEEEEcCCCC---cEeEEEeCCCCCceeEEECCC---------CCEEEEEeCCCCeEEEEeC
Confidence            67765  667777667889999998855   344455566678899999888         77 5556666789999998


Q ss_pred             CCC
Q 046226          411 TRP  413 (434)
Q Consensus       411 ~~~  413 (434)
                      ...
T Consensus       298 ~~~  300 (314)
T 1pjx_A          298 QRN  300 (314)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.49  E-value=3.5e-10  Score=99.09  Aligned_cols=238  Identities=9%  Similarity=0.020  Sum_probs=159.5

Q ss_pred             cCCCccEEEEEEeCC-EEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC
Q 046226          129 KAKTSMVVAMEVSHD-RVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD  206 (434)
Q Consensus       129 ~~~~~~v~~l~~~~~-~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  206 (434)
                      ..+...+.++++.++ .++.+.. ++.|.+||.. +. ...+..                    ..+...+.++++.+++
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~--------------------~~~~~~~~~i~~~~~g   68 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPL--------------------PTPDAKVMCLTISSDG   68 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEC--------------------SSTTCCEEEEEECTTS
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecC--------------------CcccCceeeEEECCCC
Confidence            344567899999987 5666665 7899999976 32 222211                    0134678899999999


Q ss_pred             CEEEEEecCCcEEEEEcCCCee-EEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc
Q 046226          207 DTLYSASLDKTIKVWRIRDSKC-IETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS  284 (434)
Q Consensus       207 ~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  284 (434)
                      .++++...++.|..||.. ++. ...+......+.++++.+++ ++++...++.|..||..   . ..  ..........
T Consensus        69 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~---g-~~--~~~~~~~~~~  141 (299)
T 2z2n_A           69 EVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD---G-KI--REYELPNKGS  141 (299)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT---C-CE--EEEECSSTTC
T ss_pred             CEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC---C-CE--EEecCCCCCC
Confidence            888777768899999986 332 22222345578999999988 55555667899999863   1 11  1122233445


Q ss_pred             CeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCce
Q 046226          285 PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRH  362 (434)
Q Consensus       285 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~  362 (434)
                      .+..+++++++++.++...++.|..||. ..... ..  ........+.++.++  ++++++...++.|.+||. ++. .
T Consensus       142 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~--~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~  215 (299)
T 2z2n_A          142 YPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-EF--KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-I  215 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE--ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-E
T ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-Ee--eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-E
Confidence            7899999999988887777889999997 32211 11  112233456777775  566666666889999998 542 1


Q ss_pred             eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      . ......+...+.++++.++         |.+.++...++.|..|+..
T Consensus       216 ~-~~~~~~~~~~~~~i~~~~~---------g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          216 T-EFKIPTPNARPHAITAGAG---------IDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             E-EEECSSTTCCEEEEEECST---------TCEEEEETTTTEEEEEETT
T ss_pred             E-EEECCCCCCCceeEEECCC---------CCEEEeccCCceEEEECCC
Confidence            1 1223345567889999988         7777776678899999973

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=6.9e-11  Score=104.50  Aligned_cols=243  Identities=9%  Similarity=0.014  Sum_probs=156.3

Q ss_pred             cccEEEEEE--cCCEEEE-------EeCCCeEEEecCCCceeEeecc----CCCccEEEEEEeCC--EEEEEEcCCeEEE
Q 046226           92 DGQILCIAV--GNGFIYT-------GSDSNVIRIWKQPEFTECGRLK----AKTSMVVAMEVSHD--RVYAAYGDGKIRV  156 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~t-------g~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~~~~~--~l~~~s~dg~i~v  156 (434)
                      -....+++|  ++.++++       +..++.|.+||..+++......    ++...+.+++++++  .+++++..+.|.+
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~   96 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence            345678888  6777777       5778999999987776543221    24467899999886  6777777668999


Q ss_pred             eecCCCCCcee-eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC---------------CcEEE
Q 046226          157 WRSTWDNGVKH-VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD---------------KTIKV  220 (434)
Q Consensus       157 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------------g~i~v  220 (434)
                      ||.. ++.... ..   ...               ......+.++++.++++++++...+               +.|..
T Consensus        97 ~d~~-g~~~~~~~~---~~~---------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           97 VQTD-GTFEEIAKK---DSE---------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             EETT-SCEEECCSB---CTT---------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             EeCC-CCEEEEEec---cCC---------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence            9876 432111 10   000               0123458899999999887776655               56777


Q ss_pred             EEcCCCeeEEEcccCccCeEEEEEc----CCC-eEEEE-eCCCeEEEEecccccCcceeEEEEEecccc-cCeEEEEEec
Q 046226          221 WRIRDSKCIETIQAHSEPINALVVA----DDG-VLYSA-SDDATVRVWRRYFYSENQLHTLILTLTAKY-SPVKTLTLTL  293 (434)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~~----~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~  293 (434)
                      ||.. ++... +..+......++++    +++ .++.+ ..++.|.+||+..............+..+. ..+..+++++
T Consensus       158 ~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~  235 (314)
T 1pjx_A          158 FTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE  235 (314)
T ss_dssp             ECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred             ECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence            8765 55433 22334456889999    998 55444 567899999975111001111222333333 5578899999


Q ss_pred             CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CC-EEEEecCCCcEEEEeccCC
Q 046226          294 DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--AN-YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       294 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~  359 (434)
                      +|+++++...++.|.+||..+....    ..+..+...+.+++++  ++ ++++...++.|..|++...
T Consensus       236 ~G~l~v~~~~~~~i~~~d~~~g~~~----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          236 DNNLLVANWGSSHIEVFGPDGGQPK----MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TCCEEEEEETTTEEEEECTTCBSCS----EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCEEEEEcCCCEEEEEcCCCCcEe----EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            9998888778899999997533221    1222344567788874  56 4455556789999998753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=1.5e-09  Score=103.07  Aligned_cols=311  Identities=8%  Similarity=-0.025  Sum_probs=190.2

Q ss_pred             ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC--CceeEeeccCCCccEEEEEEe----CC--EEEEEEc
Q 046226           81 SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP--EFTECGRLKAKTSMVVAMEVS----HD--RVYAAYG  150 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~~----~~--~l~~~s~  150 (434)
                      +.+.+.++.. ...+..+.|  +|++|++++.|+.|.+||+.  +++.+.++..... ...++|+    |+  ++++++.
T Consensus       186 t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~  263 (567)
T 1qks_A          186 TYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAY  263 (567)
T ss_dssp             TCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEE
T ss_pred             CCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEc
Confidence            3445555543 234667888  89999999999999999995  7888888776443 6789999    56  5666554


Q ss_pred             -CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC-CeEEEEEecCCCEEE-EEecCCcEEEEEcCCCe
Q 046226          151 -DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG-PITSIAINVSDDTLY-SASLDKTIKVWRIRDSK  227 (434)
Q Consensus       151 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~  227 (434)
                       ++.|.++|..+.+.+..+........+.            ..|.. .+..+..++++..++ ....+|.|.++|....+
T Consensus       264 ~~~~v~ViD~~t~~~~~~i~~~~~~~~~~------------~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~  331 (567)
T 1qks_A          264 WPPQYVIMDGETLEPKKIQSTRGMTYDEQ------------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN  331 (567)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCEECTTTC------------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred             cCCeEEEEECCCCcEEEEEeccccccccc------------cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence             7999999988777666554321110000            01222 577888888766544 45567999999997754


Q ss_pred             eEEEcc-cCccCeEEEEEcCCC-eE-EEEeCCCeEEEEecccccCcceeEEEEE--ecccccCeEEEEEecCCCEEE-EE
Q 046226          228 CIETIQ-AHSEPINALVVADDG-VL-YSASDDATVRVWRRYFYSENQLHTLILT--LTAKYSPVKTLTLTLDDGLLY-GG  301 (434)
Q Consensus       228 ~~~~~~-~~~~~v~~~~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~-~~  301 (434)
                      .+.... .......++.|+|++ ++ ++...++.|.++|+..  . .....+..  ...|.+....+ ++|++..++ ++
T Consensus       332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t--~-kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~  407 (567)
T 1qks_A          332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE--G-KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATS  407 (567)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT--T-EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred             cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC--C-cEEEEEeccCcCCCCccceee-ECCCCCcEEEeC
Confidence            322211 234456788999999 44 4555788999999872  1 11111211  11232212122 578755554 44


Q ss_pred             c-CCCeEEEEEcCccccc---ccccCcccCcccc--eEEEEeeCCEEEEecC-------CCcEEEEeccCCCc---eeeE
Q 046226          302 C-TDGYIHYWHKGWFSAQ---LQYGGALQGHTHA--VMCLASVANYVISGSA-------DSTSRVWAREQDGR---HTML  365 (434)
Q Consensus       302 ~-~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~--v~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~---~~~~  365 (434)
                      . .++.|.++|.......   ++....+......  -.....+++++.+...       .+.|.++|+.+.+.   ...+
T Consensus       408 ~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~  487 (567)
T 1qks_A          408 HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEF  487 (567)
T ss_dssp             BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCE
T ss_pred             CCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCc
Confidence            3 4689999998752211   2222222222111  1233455677777552       35999999987610   1222


Q ss_pred             EEee--------ccccceeEEEEeecccCCCCCCcccEEEEee-----cCCeEEEEecCCCCcccc
Q 046226          366 AVLV--------GHRGPIRCAIAFLGRFGEETEDEYCTICTGS-----LDGVLKMWRVTRPKSSCG  418 (434)
Q Consensus       366 ~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-----~Dg~v~iw~~~~~~~~~~  418 (434)
                      ..+.        .-...+..+.|+++         |+.+..+.     .++.|.++|..+.+....
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~  544 (567)
T 1qks_A          488 KTLPIAEWAGITEGQPRVVQGEFNKD---------GTEVWFSVWNGKDQESALVVVDDKTLELKHV  544 (567)
T ss_dssp             EEECHHHHHTCCSSCCEEEEEEECTT---------SSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             EEeccccccccCCCCcceEeeeECCC---------CCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence            2221        12346888999998         66665542     379999999998875543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.45  E-value=3e-10  Score=99.54  Aligned_cols=219  Identities=8%  Similarity=0.039  Sum_probs=137.9

Q ss_pred             CCCccEEEEEEeCC--E-EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC
Q 046226          130 AKTSMVVAMEVSHD--R-VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD  206 (434)
Q Consensus       130 ~~~~~v~~l~~~~~--~-l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  206 (434)
                      .+..--.+..|+++  . +++...++.|..||..++.. ..+                       .....+.++++++++
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-----------------------~~~~~~~~i~~~~dG   65 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-----------------------TMDAPVSSVALRQSG   65 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-----------------------ECSSCEEEEEEBTTS
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-----------------------eCCCceEEEEECCCC
Confidence            34445677889884  4 44445588999999875432 111                       144678999999999


Q ss_pred             CEEEEEecCCcEEEEEcCCCeeEEEccc----CccCeEEEEEcCCCeEEEEe-C---------CCeEEEEecccccCcce
Q 046226          207 DTLYSASLDKTIKVWRIRDSKCIETIQA----HSEPINALVVADDGVLYSAS-D---------DATVRVWRRYFYSENQL  272 (434)
Q Consensus       207 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~-~---------dg~i~iwd~~~~~~~~~  272 (434)
                      ++++ +. ++.|.+||.++++.......    ....++++++.++|.++.++ .         ...-.+|.+..  ....
T Consensus        66 ~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~--~g~~  141 (297)
T 3g4e_A           66 GYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP--DHHV  141 (297)
T ss_dssp             SEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT--TSCE
T ss_pred             CEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC--CCCE
Confidence            9544 44 56799999988765332221    22457889999999444433 1         12334554431  1111


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEE-EEcCCCeEEEEEcCcccccc---cccCcccCcccceEEEEee--CCEEEEec
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLY-GGCTDGYIHYWHKGWFSAQL---QYGGALQGHTHAVMCLASV--ANYVISGS  346 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~  346 (434)
                      ...    .........++|+|+++.|+ +.+.++.|.+||+.......   .....+..+......++++  |++.++..
T Consensus       142 ~~~----~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~  217 (297)
T 3g4e_A          142 KKY----FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY  217 (297)
T ss_dssp             EEE----EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE
T ss_pred             EEE----eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc
Confidence            111    12234567899999998765 45667899999974211111   1111222233455667765  66777766


Q ss_pred             CCCcEEEEeccCCCceeeEEEeeccccceeEEEEe-ec
Q 046226          347 ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF-LG  383 (434)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~-~~  383 (434)
                      .++.|.+||..++   +.+..+..+...+++++|. |+
T Consensus       218 ~~~~v~~~d~~tG---~~~~~i~~p~~~~t~~~f~g~d  252 (297)
T 3g4e_A          218 NGGRVIRLDPVTG---KRLQTVKLPVDKTTSCCFGGKN  252 (297)
T ss_dssp             TTTEEEEECTTTC---CEEEEEECSSSBEEEEEEESGG
T ss_pred             CCCEEEEEcCCCc---eEEEEEECCCCCceEEEEeCCC
Confidence            7788999999877   6667777777789999998 76

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.44  E-value=3.6e-12  Score=114.15  Aligned_cols=171  Identities=9%  Similarity=0.049  Sum_probs=122.9

Q ss_pred             cEEEEEE--cCCEEEEEeCCCeEEEecCCCce-----------eEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecC
Q 046226           94 QILCIAV--GNGFIYTGSDSNVIRIWKQPEFT-----------ECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRST  160 (434)
Q Consensus        94 ~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~  160 (434)
                      .+..+++  ...++++|+.++ +++|++++..           ..... .+.. |+.|+|..+.|+++ .++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence            4677777  788899999875 5569865432           11122 3556 99999944577777 88999999998


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN  240 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  240 (434)
                      .........                      .|...+.++.+.+.  .+++++.||.|.+||+.+++...    +...|.
T Consensus       115 sl~~~~~~~----------------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs  166 (388)
T 1xip_A          115 ELSEFRTVT----------------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVT  166 (388)
T ss_dssp             STTCEEEEE----------------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEE
T ss_pred             hhhccCccc----------------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCce
Confidence            665333221                      35666777777644  38889999999999999877643    456899


Q ss_pred             EEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEe------c---ccccCeEEEEEecCCCEEEEE
Q 046226          241 ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTL------T---AKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       241 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~---~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      |++|+|+| ++.|..||.+++|+..   ..... ....+      .   .|...|.++.|.+++.++++-
T Consensus       167 ~v~WSpkG-~~vg~~dg~i~~~~~~---~~~~~-~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          167 SFDVTNSQ-LAVLLKDRSFQSFAWR---NGEME-KQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEECSSE-EEEEETTSCEEEEEEE---TTEEE-EEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEEcCCc-eEEEEcCCcEEEEcCC---Ccccc-ccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            99999999 7789999999999876   11110 01222      2   356789999999998888873

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.40  E-value=5.7e-11  Score=117.94  Aligned_cols=241  Identities=7%  Similarity=-0.043  Sum_probs=148.4

Q ss_pred             ccccEEEEEE--cCCEEEEEeCC-----CeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCe---------
Q 046226           91 KDGQILCIAV--GNGFIYTGSDS-----NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGK---------  153 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~---------  153 (434)
                      |...+..++|  ||++||.+..+     ..|++||+.+++.+... .+...+..++|+|| .|+.++.++.         
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence            3346788888  89998887654     46999999998875431 12222357889997 7777776543         


Q ss_pred             -----EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC-----cEEEEEc
Q 046226          154 -----IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK-----TIKVWRI  223 (434)
Q Consensus       154 -----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~  223 (434)
                           |++|++.++........ .                 ...+...+..+.|+|||++|+..+.++     .|++||+
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~-~-----------------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~  301 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVF-A-----------------TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARV  301 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEE-C-----------------CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEE
T ss_pred             CCCCEEEEEECCCCchhCEEEe-c-----------------cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEEC
Confidence                 88888765542211110 0                 012334588999999999988777544     8999999


Q ss_pred             CCC--eeEEEcccCccCeEEEEEcCCC-eEEEEeC----CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC
Q 046226          224 RDS--KCIETIQAHSEPINALVVADDG-VLYSASD----DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG  296 (434)
Q Consensus       224 ~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  296 (434)
                      .++  ++...+..+...+....+ +++ .|+..+.    ++.|.+||+....    .........+...+..+.+. ++.
T Consensus       302 ~~~~~~~~~~l~~~~~~~~~~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~l~~~~~~~l~~~~~~-~~~  375 (741)
T 1yr2_A          302 TNGKIGPVTALIPDLKAQWDFVD-GVGDQLWFVSGDGAPLKKIVRVDLSGST----PRFDTVVPESKDNLESVGIA-GNR  375 (741)
T ss_dssp             ETTEECCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEECSSSS----CEEEEEECCCSSEEEEEEEE-BTE
T ss_pred             CCCCCcccEEecCCCCceEEEEe-ccCCEEEEEECCCCCCCEEEEEeCCCCc----cccEEEecCCCCeEEEEEEE-CCE
Confidence            877  314555555555555544 666 6665554    3559999876211    12222233444456677777 566


Q ss_pred             EEEEEcCCCeEEEEEcCcccccccccCcccC-cccceEEEEee--CCEEE-E---ecCCCcEEEEeccCC
Q 046226          297 LLYGGCTDGYIHYWHKGWFSAQLQYGGALQG-HTHAVMCLASV--ANYVI-S---GSADSTSRVWAREQD  359 (434)
Q Consensus       297 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~-s---~~~dg~i~iwd~~~~  359 (434)
                      ++++...|+..+||.+.......   ..+.. +...+..++++  ++.++ +   ....+.|++||+.++
T Consensus       376 lv~~~~~dg~~~l~~~~~~g~~~---~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          376 LFASYIHDAKSQVLAFDLDGKPA---GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEE---EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEEEEECCEEEEEEEeCCCCce---eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            78888889988877654211111   11222 34567777764  44333 2   334578999999876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.39  E-value=1.2e-09  Score=100.01  Aligned_cols=239  Identities=13%  Similarity=0.066  Sum_probs=149.2

Q ss_pred             ccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCC--eEEEeecCCCCCce
Q 046226           93 GQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDG--KIRVWRSTWDNGVK  166 (434)
Q Consensus        93 ~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg--~i~vwd~~~~~~~~  166 (434)
                      .....|++  +++++++...++.|++||..++............ . ++|+++  .|+++..++  .|.+|+........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            35788898  6777777777899999999887766554443332 3 888886  677777755  78888875443322


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE----cccCccCe--E
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET----IQAHSEPI--N  240 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~v--~  240 (434)
                      ...  ...                ......+.+++++|++..|+.+..++.|+.||..++.....    ..++...-  .
T Consensus       209 ~~g--~~~----------------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~  270 (409)
T 3hrp_A          209 RIG--QLG----------------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP  270 (409)
T ss_dssp             EEE--ECC----------------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred             Eee--ecc----------------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence            210  000                01345678899999666666677788999999987753322    22222222  3


Q ss_pred             EEEEcCC-C-eEEEEeCCCeEEEEecccccCcceeEEEEEec------------ccccCeEEEEEecCCCEEEEEc-CCC
Q 046226          241 ALVVADD-G-VLYSASDDATVRVWRRYFYSENQLHTLILTLT------------AKYSPVKTLTLTLDDGLLYGGC-TDG  305 (434)
Q Consensus       241 ~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~-~dg  305 (434)
                      .++++|+ + ++++-..++.|+.||..   .. . .......            ........++++++|+++++-. .++
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~---g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~  345 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPD---GE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY  345 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTT---CC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecC---CC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence            9999995 5 66666678899999865   11 1 1111110            0123578999999999777777 889


Q ss_pred             eEEEEEcCcccccccccC-c---------ccCcccceEEEEee--CCEEEEecCCCcEEEEec
Q 046226          306 YIHYWHKGWFSAQLQYGG-A---------LQGHTHAVMCLASV--ANYVISGSADSTSRVWAR  356 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~-~---------~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~  356 (434)
                      .|+.||+........... .         ....-.....++++  +.++++-..++.|+.+++
T Consensus       346 ~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          346 CLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            999999643321110000 0         00112345667765  446666667778877765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.38  E-value=3.4e-10  Score=103.67  Aligned_cols=235  Identities=11%  Similarity=0.027  Sum_probs=150.7

Q ss_pred             cEEEEEEeCC-EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE
Q 046226          134 MVVAMEVSHD-RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS  211 (434)
Q Consensus       134 ~v~~l~~~~~-~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  211 (434)
                      ....|+++++ .|+.+. .++.|++||...+.......                       ...... ++|+++++.|++
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~-----------------------~~~~~~-ia~~~~g~~l~~  187 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP-----------------------GFKGGK-PAVTKDKQRVYS  187 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE-----------------------TCCBCB-CEECTTSSEEEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec-----------------------cCCCCc-eeEecCCCcEEE
Confidence            5788999887 555554 46899999986543322211                       112223 899999999998


Q ss_pred             EecCC--cEEEEEcCCCeeEEEc----ccCccCeEEEEEcC-CCeEEEEeCCCeEEEEecccccCcceeEEEEE--eccc
Q 046226          212 ASLDK--TIKVWRIRDSKCIETI----QAHSEPINALVVAD-DGVLYSASDDATVRVWRRYFYSENQLHTLILT--LTAK  282 (434)
Q Consensus       212 ~~~dg--~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~  282 (434)
                      +..++  .|.+++...+.....+    ......+.+++++| ++.|+.+..++.|+.||....   . ......  ..+.
T Consensus       188 ~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~---~-~~~~~~~~~~g~  263 (409)
T 3hrp_A          188 IGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ---E-VTLIKQLELSGS  263 (409)
T ss_dssp             EBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC---C-EEEEEECCCCSC
T ss_pred             EecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC---C-EEEEecccccCC
Confidence            88766  7999998765543333    22456678999999 566666777899999997611   1 111111  1111


Q ss_pred             ccCe--EEEEEecC-CCEEEEEcCCCeEEEEEcCcccccccccCc--ccC---------cccceEEEEee--CCEEEEec
Q 046226          283 YSPV--KTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYGGA--LQG---------HTHAVMCLASV--ANYVISGS  346 (434)
Q Consensus       283 ~~~v--~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~---------~~~~v~~~~~~--~~~l~s~~  346 (434)
                      ...-  ..++|+|+ +.++++-..++.|+.|+......  .+...  ..+         .-.....++++  |+++++-.
T Consensus       264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            1111  38999995 55566666788999998753211  11000  000         11235667775  66777777


Q ss_pred             -CCCcEEEEeccCCCceeeEEEeecc---------------ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          347 -ADSTSRVWAREQDGRHTMLAVLVGH---------------RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       347 -~dg~i~iwd~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                       .++.|+.|++.++   . +..+.++               -.....+++.++         +.++++-..++.|+.+++
T Consensus       342 ~~~~~I~~~~~~~G---~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~---------g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          342 FKGYCLRKLDILDG---Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE---------GGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTCEEEEEETTTT---E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS---------SEEEEEESTTCEEEEEEE
T ss_pred             CCCCEEEEEECCCC---E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC---------CCEEEEECCCCeEEEEEe
Confidence             8899999998765   2 3333333               235778999988         888888888899988876


Q ss_pred             C
Q 046226          411 T  411 (434)
Q Consensus       411 ~  411 (434)
                      +
T Consensus       409 e  409 (409)
T 3hrp_A          409 E  409 (409)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=1.9e-11  Score=109.48  Aligned_cols=163  Identities=12%  Similarity=-0.034  Sum_probs=119.7

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-----------eEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSK-----------CIETIQAHSEPINALVVADDG-VLYSASDDATVRVWR  263 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd  263 (434)
                      .+..+++++...++++|+.++ +++|++...+           ..... .+.. |+.++|  ++ .|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999875 6669875433           11222 2455 999999  55 77777 889999999


Q ss_pred             cccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226          264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI  343 (434)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  343 (434)
                      ++...   ...   ....+...+..+.+.+.  .+++++.||.|.+||+......        .+...|.|++|+++-++
T Consensus       113 v~sl~---~~~---~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~--------~~~~~Vs~v~WSpkG~~  176 (388)
T 1xip_A          113 LEELS---EFR---TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK--------QLAQNVTSFDVTNSQLA  176 (388)
T ss_dssp             SSSTT---CEE---EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE--------EEEESEEEEEECSSEEE
T ss_pred             chhhh---ccC---ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc--------cccCCceEEEEcCCceE
Confidence            87332   111   22334556777776654  3888899999999999744321        14568999999987789


Q ss_pred             EecCCCcEEEEeccCCCceee--EEEe------e---ccccceeEEEEeec
Q 046226          344 SGSADSTSRVWAREQDGRHTM--LAVL------V---GHRGPIRCAIAFLG  383 (434)
Q Consensus       344 s~~~dg~i~iwd~~~~~~~~~--~~~~------~---~h~~~v~~~~~~~~  383 (434)
                      .|..||.+++|+....   ..  ..++      .   +|...|.++.|.++
T Consensus       177 vg~~dg~i~~~~~~~~---~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~  224 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNG---EMEKQFEFSLPSELEELPVEEYSPLSVTILSP  224 (388)
T ss_dssp             EEETTSCEEEEEEETT---EEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred             EEEcCCcEEEEcCCCc---cccccceecCCcccccccCCCeeEEEEEEecC
Confidence            9999999999988775   32  3444      2   47888999999987

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.37  E-value=1.8e-09  Score=94.64  Aligned_cols=223  Identities=8%  Similarity=-0.007  Sum_probs=138.5

Q ss_pred             ccccEEEEEE---cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCce
Q 046226           91 KDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVK  166 (434)
Q Consensus        91 h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~  166 (434)
                      +..---+..|   ++.++++...++.|..||..+++.. .+. ....+.+++++++ .++++. ++.|.+||..+++...
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEE
Confidence            3344556777   3567777778899999999876542 222 3467999999987 555555 6779999986543211


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC---------CcEEEEEcCC-CeeEEEcccCc
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD---------KTIKVWRIRD-SKCIETIQAHS  236 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------g~i~vwd~~~-~~~~~~~~~~~  236 (434)
                      ....   ..               ......+.++++.|+|+++++...+         ..-.+|.+.. ++. ..+..+.
T Consensus        88 ~~~~---~~---------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~  148 (297)
T 3g4e_A           88 LATV---DN---------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQV  148 (297)
T ss_dssp             EEEC---CT---------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEE
T ss_pred             EEec---CC---------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeecc
Confidence            1110   00               0123457889999999966654322         2234454432 333 2233344


Q ss_pred             cCeEEEEEcCCC-e-EEEEeCCCeEEEEecccccCcc-eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          237 EPINALVVADDG-V-LYSASDDATVRVWRRYFYSENQ-LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       237 ~~v~~~~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      ...+.++|+|++ . +++.+.++.|.+||+....... .......+.........++++++|++.++...++.|.+||..
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence            556899999998 4 4566678899999874112211 122233333344567889999999887777778899999975


Q ss_pred             cccccccccCcccCcccceEEEEeeC
Q 046226          314 WFSAQLQYGGALQGHTHAVMCLASVA  339 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~v~~~~~~~  339 (434)
                      +.+..    ..+..+...+++++|.+
T Consensus       229 tG~~~----~~i~~p~~~~t~~~f~g  250 (297)
T 3g4e_A          229 TGKRL----QTVKLPVDKTTSCCFGG  250 (297)
T ss_dssp             TCCEE----EEEECSSSBEEEEEEES
T ss_pred             CceEE----EEEECCCCCceEEEEeC
Confidence            33322    22334445678888863

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=9.5e-11  Score=105.05  Aligned_cols=269  Identities=9%  Similarity=-0.008  Sum_probs=162.4

Q ss_pred             ccEEEEEE--cCCEEEEEe--CCCeEEEecCCCceeEeec-------cCCCccEEEEEEeCC-EEEEEEc------CCeE
Q 046226           93 GQILCIAV--GNGFIYTGS--DSNVIRIWKQPEFTECGRL-------KAKTSMVVAMEVSHD-RVYAAYG------DGKI  154 (434)
Q Consensus        93 ~~v~~~~~--~~~~l~tg~--~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~l~~~~~-~l~~~s~------dg~i  154 (434)
                      .....+++  +|+++++..  .++.++||.+.+++.. .+       ..+-..+..++++++ .|+.+..      ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            67889999  678888763  2343556655455433 22       234567999999986 6666553      4789


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-e---cCCcEEEEEcCCCeeEE
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-S---LDKTIKVWRIRDSKCIE  230 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~---~dg~i~vwd~~~~~~~~  230 (434)
                      .+||+.+++.+..+.+...                ...+...+..+++++++..++.+ .   .++.|.+||+.+++...
T Consensus        96 ~~~d~~tg~~~~~~~~~~~----------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r  159 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPP----------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR  159 (343)
T ss_dssp             EEEETTTTEEEEEEECCTT----------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred             EEEECCCCeEEEEEECChh----------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence            9999887654444432100                01234557899999876555444 3   57899999999888777


Q ss_pred             EcccCccCeE-EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-eE
Q 046226          231 TIQAHSEPIN-ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-YI  307 (434)
Q Consensus       231 ~~~~~~~~v~-~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i  307 (434)
                      .+..|..... ...+..++ .+.+...++.++.|.                    ..+..++++|+++.|+.+..++ .|
T Consensus       160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~~l  219 (343)
T 2qe8_A          160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHSTSM  219 (343)
T ss_dssp             ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCSEE
T ss_pred             EecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEEEEeCCCCeE
Confidence            6655422110 13334456 555667777776552                    1356799999999888887766 55


Q ss_pred             EEEEcCcccc----cccccCc--ccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEE
Q 046226          308 HYWHKGWFSA----QLQYGGA--LQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAI  379 (434)
Q Consensus       308 ~i~d~~~~~~----~~~~~~~--~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~  379 (434)
                      ..++......    .......  ..++......+++  +|+++++...++.|.+||..++. ...+.. ..+...+.+++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~-~~~~~~p~~va  297 (343)
T 2qe8_A          220 YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVT-DEKLSWTDSFN  297 (343)
T ss_dssp             EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEE-CGGGSCEEEEE
T ss_pred             EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEE-CCceecCCeeE
Confidence            5554321000    0000000  1122223334444  57788888889999999985441 122222 12345678899


Q ss_pred             EeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          380 AFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       380 ~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      +.++         +.++++.+..+.+.+|.
T Consensus       298 ~~~~---------g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          298 FGSD---------GYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             ECTT---------SCEEEEECCGGGSGGGB
T ss_pred             ECCC---------CcEEEEeCccccccccc
Confidence            9887         77777777655554443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.36  E-value=7.8e-09  Score=90.42  Aligned_cols=237  Identities=10%  Similarity=0.017  Sum_probs=156.5

Q ss_pred             CCCccEEEEEEeCC-EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226          130 AKTSMVVAMEVSHD-RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD  207 (434)
Q Consensus       130 ~~~~~v~~l~~~~~-~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (434)
                      .....+.++++.++ .++.+. .++.|.+||.. ++ ...+..                    ......+.++++.++++
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-~~~~~~--------------------~~~~~~~~~i~~~~~g~   74 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-IKEFEV--------------------PTPDAKVMCLIVSSLGD   74 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEEC--------------------SSTTCCEEEEEECTTSC
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-eEEEEC--------------------CCCCCcceeEEECCCCC
Confidence            34567889999886 555555 57899999876 32 222211                    02345688999999998


Q ss_pred             EEEEEecCCcEEEEEcCCCeeE-EEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccC
Q 046226          208 TLYSASLDKTIKVWRIRDSKCI-ETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSP  285 (434)
Q Consensus       208 ~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  285 (434)
                      ++++...++.|..+|.. ++.. ..+......+.++++.+++ ++++...++.|..+|..   . ...  ..........
T Consensus        75 l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g-~~~--~~~~~~~~~~  147 (300)
T 2qc5_A           75 IWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD---G-TIY--EYDLPNKGSY  147 (300)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT---S-CEE--EEECSSTTCC
T ss_pred             EEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC---C-CEE--EccCCCCCCC
Confidence            77777667889999987 5543 2222234678999999988 55555557889999864   1 111  1123334457


Q ss_pred             eEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCcee
Q 046226          286 VKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHT  363 (434)
Q Consensus       286 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~  363 (434)
                      +..+++++++++.++...++.|..||.. .... .+  ....+...+.++.++  +++.++....+.|.+||. ++.  .
T Consensus       148 ~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~-~~--~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~  220 (300)
T 2qc5_A          148 PAFITLGSDNALWFTENQNNSIGRITNT-GKLE-EY--PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--I  220 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECTT-CCEE-EE--ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--E
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECCC-CcEE-Ee--eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--E
Confidence            8899999999977776668899999873 2111 11  122333456777775  556666666778999998 331  1


Q ss_pred             eEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          364 MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       364 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      ....+..+...+.++++.++         +.+.++...++.|..|+..
T Consensus       221 ~~~~~~~~~~~~~~i~~d~~---------g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          221 SEYDIPTPNARPHAITAGKN---------SEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEEECSSTTCCEEEEEECST---------TCEEEEETTTTEEEEECTT
T ss_pred             EEEECCCCCCCceEEEECCC---------CCEEEeccCCCeEEEECCC
Confidence            22223344566888999888         7777777677899999873

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.36  E-value=4.8e-10  Score=109.64  Aligned_cols=281  Identities=10%  Similarity=0.061  Sum_probs=170.6

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCcc-----------EEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeE
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSM-----------VVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~  169 (434)
                      .+..|++++.++.|..+|..+++.+.++..+...           -..+.+..+.+++++.|+.|..+|..+++.+....
T Consensus        69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence            5778888888999999999999998887543221           12345567799999999999999999988877664


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe------cCCcEEEEEcCCCeeEEEcccCc-------
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS------LDKTIKVWRIRDSKCIETIQAHS-------  236 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~-------  236 (434)
                      ........            ......++    + .++ .++++.      .+|.|+.||.++|+.+..+....       
T Consensus       149 ~~~~~~~~------------~~~~~sP~----v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~  210 (689)
T 1yiq_A          149 TRADHKRS------------YTITGAPR----V-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP  210 (689)
T ss_dssp             CCSCTTSC------------CBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             CcCCCCCC------------ccccCCcE----E-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence            32000000            00011111    1 133 445443      36899999999999988765210       


Q ss_pred             ------------------------cCeEEEEEcCCC-eEEEEeCCCe-------------------EEEEecccccCcce
Q 046226          237 ------------------------EPINALVVADDG-VLYSASDDAT-------------------VRVWRRYFYSENQL  272 (434)
Q Consensus       237 ------------------------~~v~~~~~~~~~-~l~s~~~dg~-------------------i~iwd~~~~~~~~~  272 (434)
                                              .....+++.++. +++.+..++.                   |..+|..  ++...
T Consensus       211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~--TG~~~  288 (689)
T 1yiq_A          211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD--TGEYV  288 (689)
T ss_dssp             CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT--TCCEE
T ss_pred             ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc--CCcee
Confidence                                    011256777766 8888877764                   8899887  22222


Q ss_pred             eEEEEEecccc-------cCeEEEEEecCCC---EEEEEcCCCeEEEEEcCcccccccccCc------------------
Q 046226          273 HTLILTLTAKY-------SPVKTLTLTLDDG---LLYGGCTDGYIHYWHKGWFSAQLQYGGA------------------  324 (434)
Q Consensus       273 ~~~~~~~~~~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------  324 (434)
                      ...  ....|.       .++.......+|+   .++.++.+|.++++|..+.+........                  
T Consensus       289 W~~--~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~  366 (689)
T 1yiq_A          289 WHY--QTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILD  366 (689)
T ss_dssp             EEE--ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEEC
T ss_pred             Eee--ecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccc
Confidence            221  111121       1222223333554   7889999999999998766543111000                  


Q ss_pred             ------ccCcccce-----------EEEEee--CCEEEEec---------------------------------------
Q 046226          325 ------LQGHTHAV-----------MCLASV--ANYVISGS---------------------------------------  346 (434)
Q Consensus       325 ------~~~~~~~v-----------~~~~~~--~~~l~s~~---------------------------------------  346 (434)
                            .......+           ..++++  ..++++..                                       
T Consensus       367 ~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~  446 (689)
T 1yiq_A          367 EENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGL  446 (689)
T ss_dssp             HHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHH
T ss_pred             hhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccC
Confidence                  00000000           013343  33444431                                       


Q ss_pred             ------CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          347 ------ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       347 ------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                            .+|.|+.||+.++   +.+-.+..+. ++....+...         +.+++.|+.||.|+.||.++++.+
T Consensus       447 ~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~ta---------gglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          447 LEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTA---------GNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             HHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEET---------TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceEC---------CCEEEEECCCCcEEEEECCCCccc
Confidence                  1478999999998   5555555443 2333344444         778999999999999999999875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=1.1e-10  Score=104.29  Aligned_cols=264  Identities=9%  Similarity=-0.053  Sum_probs=164.3

Q ss_pred             eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------cCCeEEEeecCCCCCceeeEeeeccCCCCce
Q 046226          113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------GDGKIRVWRSTWDNGVKHVKLATIPKTGGAV  180 (434)
Q Consensus       113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  180 (434)
                      .|.++|..+++.+.++.....+  .+.++|+  .++++.          .++.|.+||..+.+.+..+.+....      
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~------  118 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP------  118 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC------
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc------
Confidence            8889999999999998766666  7999998  666665          3789999999988887776532000      


Q ss_pred             eEEEeccccccCcCCCeEEEEEecCCCEEEEEec--CCcEEE--EEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEe
Q 046226          181 RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--DKTIKV--WRIRDSKCIETIQAHSEPINALVVADDG--VLYSAS  254 (434)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~  254 (434)
                              .+ ........++++|||++++++..  +..|.+  +|+.+   +..+.... .   +.+.|++  .+++.+
T Consensus       119 --------~~-~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~  182 (368)
T 1mda_H          119 --------RF-SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGS  182 (368)
T ss_dssp             --------SC-CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCC
T ss_pred             --------cc-ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEc
Confidence                    00 00123567899999999999875  457888  99877   44443211 1   1223444  566677


Q ss_pred             CCCeEEEEecccccCcceeEEEE----EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc-----
Q 046226          255 DDATVRVWRRYFYSENQLHTLIL----TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL-----  325 (434)
Q Consensus       255 ~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  325 (434)
                      .||.+.+.|+...... ..+...    .+.....+.   . .+++..++..+. +.|.+.|+............+     
T Consensus       183 ~dg~~~~vd~~~~~~~-~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~  256 (368)
T 1mda_H          183 CPASLAASDLAAAPAA-AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             CTTSCEEEECCSSCCC-CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             CCCCEEEEECcccccc-CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccc
Confidence            8888888887620000 011110    011112233   3 666666666666 999999985422111100000     


Q ss_pred             -----cCcccceEEEEeeCCEEEEecC---------CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCC
Q 046226          326 -----QGHTHAVMCLASVANYVISGSA---------DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETED  391 (434)
Q Consensus       326 -----~~~~~~v~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  391 (434)
                           .........+..+++.++.+..         ++.+.++|+.+.   +.+..+.... ....++++|+        
T Consensus       257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg~-~p~gi~~s~D--------  324 (368)
T 1mda_H          257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISNGH-DSDAIIAAQD--------  324 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEEEE-EECEEEECCS--------
T ss_pred             cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---eEEEEEECCC-CcceEEECCC--------
Confidence                 0111122456667776665432         235669999987   5555554433 5788999999        


Q ss_pred             ccc-EEEEee-cCCeEEEEecCCCCccccc
Q 046226          392 EYC-TICTGS-LDGVLKMWRVTRPKSSCGH  419 (434)
Q Consensus       392 ~~~-~l~s~~-~Dg~v~iw~~~~~~~~~~~  419 (434)
                       ++ ++++.. .++.|.++|+.+.+.+...
T Consensus       325 -g~~l~va~~~~~~~VsVID~~t~kvv~~I  353 (368)
T 1mda_H          325 -GASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             -SSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             -CCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence             65 567776 5999999999998866433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.34  E-value=4.5e-10  Score=109.57  Aligned_cols=282  Identities=9%  Similarity=0.052  Sum_probs=173.8

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCc-----------cEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeE
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS-----------MVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~  169 (434)
                      .+..|++++.++.|..+|..+++.+.++.....           ....+++..+.+++++.|+.|..+|..+++.+....
T Consensus        76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            577788888899999999999999987764321           113455677799999999999999999888777664


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec------CCcEEEEEcCCCeeEEEcccCccC-----
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL------DKTIKVWRIRDSKCIETIQAHSEP-----  238 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~-----  238 (434)
                      .......+.            .....++    +  .+..+++++.      +|.|+.+|..+|+.+..+......     
T Consensus       156 ~~~~~~~~~------------~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~  217 (677)
T 1kb0_A          156 TFEGQKGSL------------TITGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF  217 (677)
T ss_dssp             TTTTCCSSC------------BCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             CCcCcCcCc------------ccccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence            320000000            0011111    1  1445555543      689999999999998877542211     


Q ss_pred             ---------------------------eEEEEEcCCC-eEEEEeCCC-------------------eEEEEecccccCcc
Q 046226          239 ---------------------------INALVVADDG-VLYSASDDA-------------------TVRVWRRYFYSENQ  271 (434)
Q Consensus       239 ---------------------------v~~~~~~~~~-~l~s~~~dg-------------------~i~iwd~~~~~~~~  271 (434)
                                                 ...+++.+++ +++.+..++                   .|..+|..  ++..
T Consensus       218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~--TG~~  295 (677)
T 1kb0_A          218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD--TGKY  295 (677)
T ss_dssp             SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT--TCCE
T ss_pred             cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC--CCCE
Confidence                                       1346777776 777776654                   48888876  2222


Q ss_pred             eeEEEEEecccc-------cCeEEEEEecCC---CEEEEEcCCCeEEEEEcCcccccccccCcccC-------cccce--
Q 046226          272 LHTLILTLTAKY-------SPVKTLTLTLDD---GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG-------HTHAV--  332 (434)
Q Consensus       272 ~~~~~~~~~~~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~~v--  332 (434)
                      ...  .....+.       .....+....+|   ..++.++.+|.|+++|..+.+...........       ....+  
T Consensus       296 ~W~--~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~  373 (677)
T 1kb0_A          296 KWH--YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGI  373 (677)
T ss_dssp             EEE--EESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEEC
T ss_pred             EEE--EecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeec
Confidence            222  1222221       122223334467   68999999999999998766543322100000       00000  


Q ss_pred             ----------------------EEEEee--CCEEEEecC-----------------------------------------
Q 046226          333 ----------------------MCLASV--ANYVISGSA-----------------------------------------  347 (434)
Q Consensus       333 ----------------------~~~~~~--~~~l~s~~~-----------------------------------------  347 (434)
                                            ..++++  ..++++...                                         
T Consensus       374 ~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (677)
T 1kb0_A          374 AAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKS  453 (677)
T ss_dssp             GGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCS
T ss_pred             cccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCC
Confidence                                  123444  445555322                                         


Q ss_pred             --CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          348 --DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       348 --dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                        .|.|..||+.++   +.+..+. +..++....+...         +.+++.++.||.|++||..+++.+.
T Consensus       454 ~~~g~l~A~D~~tG---~~~W~~~-~~~~~~~g~~~~~---------g~~v~~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          454 KPFGRLLAWDPVAQ---KAAWSVE-HVSPWNGGTLTTA---------GNVVFQGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             CCEEEEEEEETTTT---EEEEEEE-ESSSCCCCEEEET---------TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCccEEEEEeCCCC---cEEeecC-CCCCCcCcceEeC---------CCEEEEECCCCcEEEEECCCCceee
Confidence              278999999988   5555543 3334455555555         6788889999999999999998753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.32  E-value=8.7e-11  Score=104.64  Aligned_cols=267  Identities=15%  Similarity=0.104  Sum_probs=163.5

Q ss_pred             ccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeE
Q 046226           91 KDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus        91 h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~  169 (434)
                      +...+.++.. .+..|+.++.+  |..+|. +++....+...........+..+.+++++.++.|..+|.. ++......
T Consensus        58 ~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~  133 (330)
T 3hxj_A           58 GEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFK  133 (330)
T ss_dssp             GGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred             CCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence            4445677777 46677777766  888885 6665555443333333344456688999989999999976 44333321


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCe
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV  249 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (434)
                                            .....+.++...+++. ++.++.++.|..+|.. ++.+..+......+.++...+++.
T Consensus       134 ----------------------~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~  189 (330)
T 3hxj_A          134 ----------------------TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT  189 (330)
T ss_dssp             ----------------------CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC
T ss_pred             ----------------------CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE
Confidence                                  1222344555555665 6667778999999998 887777766666777888877886


Q ss_pred             EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc
Q 046226          250 LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT  329 (434)
Q Consensus       250 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  329 (434)
                      +..++  +.|..+| .  ...    ...........+.++...+++. |++++.++.|..+|... ......    ....
T Consensus       190 l~v~t--~~l~~~d-~--~g~----~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g-~~~~~~----~~~~  254 (330)
T 3hxj_A          190 IYFGS--DKVYAIN-P--DGT----EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG-TEKWRF----KTGK  254 (330)
T ss_dssp             EEEES--SSEEEEC-T--TSC----EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-CEEEEE----ECSS
T ss_pred             EEEEe--CEEEEEC-C--CCc----EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC-CEeEEe----eCCC
Confidence            66666  7788888 3  111    1222223335577788877765 55667778888887432 111111    1111


Q ss_pred             cceEEEEee-CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226          330 HAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       330 ~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw  408 (434)
                      ..+..+..+ +..|..++.+|.|..+|. ++   +.+..+......+.++...++         + .|..++.+|.+++.
T Consensus       255 ~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g---~~~~~~~~~~~~~~~~~~d~~---------g-~l~~gt~~G~~~~~  320 (330)
T 3hxj_A          255 RIESSPVIGNTDTIYFGSYDGHLYAINP-DG---TEKWNFETGSWIIATPVIDEN---------G-TIYFGTRNGKFYAL  320 (330)
T ss_dssp             CCCSCCEECTTSCEEEECTTCEEEEECT-TS---CEEEEEECSSCCCSCCEECTT---------C-CEEEECTTSCEEEE
T ss_pred             CccccceEcCCCeEEEecCCCCEEEECC-CC---cEEEEEEcCCccccceEEcCC---------C-EEEEEcCCCeEEEE
Confidence            122233344 557788888989999996 44   334444444455666666444         4 46778899999998


Q ss_pred             ecCCCC
Q 046226          409 RVTRPK  414 (434)
Q Consensus       409 ~~~~~~  414 (434)
                      ..+..+
T Consensus       321 ~~~~~~  326 (330)
T 3hxj_A          321 FNLEHH  326 (330)
T ss_dssp             EC----
T ss_pred             eccccc
Confidence            876544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.31  E-value=4.7e-09  Score=93.19  Aligned_cols=212  Identities=7%  Similarity=-0.090  Sum_probs=128.5

Q ss_pred             EEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE
Q 046226          135 VVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS  211 (434)
Q Consensus       135 v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  211 (434)
                      ..+..|+++   .+++...++.|..||..++.. ..+                       .....+.+++++++++++++
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-----------------------~~~~~v~~i~~~~dg~l~v~  106 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRK-TVH-----------------------ALPFMGSALAKISDSKQLIA  106 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEE-----------------------ECSSCEEEEEEEETTEEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEE-----------------------ECCCcceEEEEeCCCeEEEE
Confidence            456778884   444555688999999865421 111                       13356899999999887665


Q ss_pred             EecCCcEEEEEcCCCeeEEEccc----CccCeEEEEEcCCCeEEEEeCC-----CeEEEEecccccCcceeEEEEEeccc
Q 046226          212 ASLDKTIKVWRIRDSKCIETIQA----HSEPINALVVADDGVLYSASDD-----ATVRVWRRYFYSENQLHTLILTLTAK  282 (434)
Q Consensus       212 ~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~  282 (434)
                      . .+ .|.+||..+++.......    ....+.+++++++|.++.++.+     +...+|.+.  .. .....    ...
T Consensus       107 ~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~----~~~  177 (326)
T 2ghs_A          107 S-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTKL----FAD  177 (326)
T ss_dssp             E-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEEE----EEE
T ss_pred             E-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEEe----eCC
Confidence            4 44 499999988775332221    1246889999999944434321     223444433  11 11111    122


Q ss_pred             ccCeEEEEEecCCCEEEEE-cCCCeEEEEEcC--cc-ccc-ccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEe
Q 046226          283 YSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKG--WF-SAQ-LQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWA  355 (434)
Q Consensus       283 ~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~-~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd  355 (434)
                      ......++|+|+++.++.+ +.++.|.+||+.  .. ... ......+.........+.++  |++.++...++.|.+||
T Consensus       178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence            2456789999999877554 557899999975  22 111 01111122223345566665  56666665678899999


Q ss_pred             ccCCCceeeEEEeeccccceeEEEEe-ec
Q 046226          356 REQDGRHTMLAVLVGHRGPIRCAIAF-LG  383 (434)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~v~~~~~~-~~  383 (434)
                      . ++   +.+..+..+...+++++|. ++
T Consensus       258 ~-~g---~~~~~i~~~~~~~~~~af~g~d  282 (326)
T 2ghs_A          258 T-DG---NHIARYEVPGKQTTCPAFIGPD  282 (326)
T ss_dssp             T-TC---CEEEEEECSCSBEEEEEEESTT
T ss_pred             C-CC---CEEEEEECCCCCcEEEEEecCC
Confidence            8 34   4555666666779999998 76

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.29  E-value=3e-09  Score=103.76  Aligned_cols=298  Identities=13%  Similarity=0.068  Sum_probs=178.7

Q ss_pred             EEEcCCEEEEEeCCCeEEEecCCCceeEeeccCC-C----ccE-EEEEEeCCEEEEEEc------CCeEEEeecCCCCCc
Q 046226           98 IAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAK-T----SMV-VAMEVSHDRVYAAYG------DGKIRVWRSTWDNGV  165 (434)
Q Consensus        98 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~----~~v-~~l~~~~~~l~~~s~------dg~i~vwd~~~~~~~  165 (434)
                      +++.+..|++++.|+.|..+|..+++.+..+..+ .    ..+ .......+.+++++.      ++.|+.+|..+++.+
T Consensus       124 ~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          124 VALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK  203 (677)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             ceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence            4457788999999999999999999998887654 1    111 122234567777664      799999999999887


Q ss_pred             eeeEeeeccCCCCceeE-EEecccccc---------CcCCCeEEEEEecCCCEEEEEecCC-------------------
Q 046226          166 KHVKLATIPKTGGAVRN-LIVGKDKMM---------KHMGPITSIAINVSDDTLYSASLDK-------------------  216 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~s~~~dg-------------------  216 (434)
                      ..+...........+.. +......+.         +.......+++++++.+++.+..++                   
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~  283 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA  283 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence            76654221100000000 000000000         1222334678889999999887664                   


Q ss_pred             cEEEEEcCCCeeEEEccc--Cc-------cCeEEEEEcCCC----eEEEEeCCCeEEEEecccccCcceeEEEEE-----
Q 046226          217 TIKVWRIRDSKCIETIQA--HS-------EPINALVVADDG----VLYSASDDATVRVWRRYFYSENQLHTLILT-----  278 (434)
Q Consensus       217 ~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----  278 (434)
                      .|..+|.++|+.+..++.  |.       .....+....+|    .++.++.+|.|+++|...  +.........     
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t--G~~l~~~~~~~~~~~  361 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN--GKFISAKNFVPVNWA  361 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT--CCEEEEEESSCCSSE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC--CCEeccccccccCcc
Confidence            599999999999888764  21       112222222244    688889999999999872  2221111100     


Q ss_pred             --ecccccCe------------------------EEEEEecCCCEEEEEcC-----------------------------
Q 046226          279 --LTAKYSPV------------------------KTLTLTLDDGLLYGGCT-----------------------------  303 (434)
Q Consensus       279 --~~~~~~~v------------------------~~~~~~~~~~~l~~~~~-----------------------------  303 (434)
                        +.....++                        ..++++|++.++++...                             
T Consensus       362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (677)
T 1kb0_A          362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (677)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence              00000001                        25688998888887543                             


Q ss_pred             --------------CCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEee
Q 046226          304 --------------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       304 --------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  369 (434)
                                    .|.|..||+.+.+...+.........   ..+...+..++.++.||.+++||..++   +.+..+.
T Consensus       442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~---g~~~~~g~~v~~g~~dg~l~a~D~~tG---~~lw~~~  515 (677)
T 1kb0_A          442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNG---GTLTTAGNVVFQGTADGRLVAYHAATG---EKLWEAP  515 (677)
T ss_dssp             CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCC---CEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEE
T ss_pred             cccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcC---cceEeCCCEEEEECCCCcEEEEECCCC---ceeeeee
Confidence                          27899999877665554421111111   224456788888999999999999998   6666665


Q ss_pred             cccc-ceeEEEEeecccCCCCCCccc-EEEEeec----------------CCeEEEEecCC
Q 046226          370 GHRG-PIRCAIAFLGRFGEETEDEYC-TICTGSL----------------DGVLKMWRVTR  412 (434)
Q Consensus       370 ~h~~-~v~~~~~~~~~~~~~~~~~~~-~l~s~~~----------------Dg~v~iw~~~~  412 (434)
                      ...+ ...-+.+..+         |+ +++..+.                .+.+..|.+..
T Consensus       516 ~~~~~~~~p~~y~~~---------G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          516 TGTGVVAAPSTYMVD---------GRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             CSSCCCSCCEEEEET---------TEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             CCCCcccCCEEEEeC---------CEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            4332 2233555566         54 4444322                46888888873

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.27  E-value=5.2e-09  Score=102.32  Aligned_cols=278  Identities=15%  Similarity=0.114  Sum_probs=164.5

Q ss_pred             EEEcCCEEEEEeCCCeEEEecCCCceeEeeccCC--Cc---cEE-EEEEeCCEEEEEEc------CCeEEEeecCCCCCc
Q 046226           98 IAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAK--TS---MVV-AMEVSHDRVYAAYG------DGKIRVWRSTWDNGV  165 (434)
Q Consensus        98 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--~~---~v~-~l~~~~~~l~~~s~------dg~i~vwd~~~~~~~  165 (434)
                      +++.+..|++++.|+.|..+|..+++.+..+...  ..   .+. +-.+..+.+++++.      +|.|..||..+++.+
T Consensus       117 ~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~  196 (689)
T 1yiq_A          117 VAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEA  196 (689)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             cEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence            3446778999999999999999999998776542  11   111 11223456666643      789999999999887


Q ss_pred             eeeEeee-ccCCCCceeEEEecccccc--------CcCCCeEEEEEecCCCEEEEEecCCc-------------------
Q 046226          166 KHVKLAT-IPKTGGAVRNLIVGKDKMM--------KHMGPITSIAINVSDDTLYSASLDKT-------------------  217 (434)
Q Consensus       166 ~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~dg~-------------------  217 (434)
                      ..+.... .+........+........        ++......+++.++..+++.+..++.                   
T Consensus       197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~  276 (689)
T 1yiq_A          197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS  276 (689)
T ss_dssp             EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred             EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            7664211 0000000000000000000        11222236788898999999887764                   


Q ss_pred             EEEEEcCCCeeEEEccc--Cc-------cCeEEEEEcCCC----eEEEEeCCCeEEEEecccccCcceeEEE-------E
Q 046226          218 IKVWRIRDSKCIETIQA--HS-------EPINALVVADDG----VLYSASDDATVRVWRRYFYSENQLHTLI-------L  277 (434)
Q Consensus       218 i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~  277 (434)
                      |..+|.++|+.+..++.  |.       ..........++    .++.++.+|.++++|....  .......       .
T Consensus       277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG--~~l~~~~~~~~~w~~  354 (689)
T 1yiq_A          277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG--ELLSAKGIVPQSWTK  354 (689)
T ss_dssp             EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC--CEEEEEESSCCSSEE
T ss_pred             EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC--CEecccccccccccc
Confidence            99999999999988764  21       111112222244    5888899999999998622  1111000       0


Q ss_pred             Ee-----------------cccc-----------cCeEEEEEecCCCEEEEEcC--------------------------
Q 046226          278 TL-----------------TAKY-----------SPVKTLTLTLDDGLLYGGCT--------------------------  303 (434)
Q Consensus       278 ~~-----------------~~~~-----------~~v~~~~~~~~~~~l~~~~~--------------------------  303 (434)
                      ..                 ....           ..-..++++|+..++++...                          
T Consensus       355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  434 (689)
T 1yiq_A          355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL  434 (689)
T ss_dssp             EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred             ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence            00                 0000           01123688888888777532                          


Q ss_pred             -------------------CCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceee
Q 046226          304 -------------------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTM  364 (434)
Q Consensus       304 -------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  364 (434)
                                         +|.|..||+.+.+...+.........   -.+...+.+++.|+.||.++.||.+++   +.
T Consensus       435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~---g~~~tagglvf~gt~dg~l~a~D~~tG---~~  508 (689)
T 1yiq_A          435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG---GTLSTAGNLVFEGSADGRVIAYAADTG---EK  508 (689)
T ss_dssp             EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC---CEEEETTTEEEEECTTSEEEEEETTTC---CE
T ss_pred             cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC---ccceECCCEEEEECCCCcEEEEECCCC---cc
Confidence                               37788999877665554322111110   134456889999999999999999998   66


Q ss_pred             EEEeeccccce-eEEEEeec
Q 046226          365 LAVLVGHRGPI-RCAIAFLG  383 (434)
Q Consensus       365 ~~~~~~h~~~v-~~~~~~~~  383 (434)
                      +..++...+.+ .-+.+..+
T Consensus       509 lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          509 LWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEECSSCCCSCCEEEEET
T ss_pred             ceeeeCCCCcccCceEEEEC
Confidence            66665443322 33666666

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.25  E-value=2.7e-09  Score=93.85  Aligned_cols=227  Identities=11%  Similarity=0.032  Sum_probs=136.0

Q ss_pred             eccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe
Q 046226          127 RLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN  203 (434)
Q Consensus       127 ~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  203 (434)
                      .+...........|+++   .+++...++.|..|+.. +. ...+.                      .+...+..++++
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~----------------------~~~~~~~gl~~d   94 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLL----------------------DATAFTNGNAVD   94 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEE----------------------ESCSCEEEEEEC
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEe----------------------CCCCccceeeEC
Confidence            33344455678889886   35555668899999863 22 22221                      245568899999


Q ss_pred             cCCCEEEEEecCCcEEEEEcCCCeeEEEccc----CccCeEEEEEcCCC-eEEE----EeC-------------CCeEEE
Q 046226          204 VSDDTLYSASLDKTIKVWRIRDSKCIETIQA----HSEPINALVVADDG-VLYS----ASD-------------DATVRV  261 (434)
Q Consensus       204 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~-~l~s----~~~-------------dg~i~i  261 (434)
                      ++|+++++...++.|.+||.. ++.......    ....+.++++.++| ++++    |..             .+.|..
T Consensus        95 ~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~  173 (305)
T 3dr2_A           95 AQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYR  173 (305)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred             CCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEE
Confidence            999976665556789999986 553222111    12346789999999 4444    332             245666


Q ss_pred             EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC------CeEEEEEcCccccc-ccccCcccCcccceEE
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD------GYIHYWHKGWFSAQ-LQYGGALQGHTHAVMC  334 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~  334 (434)
                      ||..  .. ......     .......++|+|+++.|+++...      +.|.+||+...... .......  .......
T Consensus       174 ~d~~--~g-~~~~~~-----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdg  243 (305)
T 3dr2_A          174 LPPD--GS-PLQRMA-----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDG  243 (305)
T ss_dssp             ECSS--SC-CCEEEE-----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCS
T ss_pred             EcCC--CC-cEEEEe-----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCe
Confidence            6653  11 111111     23456789999999988877665      78999997533200 0000000  1112233


Q ss_pred             EEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCe
Q 046226          335 LAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV  404 (434)
Q Consensus       335 ~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~  404 (434)
                      +.+  +|+ |.+++.+ .|.+|+.. +   +.+..+..+. .+.+++|.++         ++.|..++.++.
T Consensus       244 i~~d~~G~-lwv~~~~-gv~~~~~~-g---~~~~~~~~~~-~~~~~~f~~d---------~~~L~it~~~~l  299 (305)
T 3dr2_A          244 FCVDRGGW-LWSSSGT-GVCVFDSD-G---QLLGHIPTPG-TASNCTFDQA---------QQRLFITGGPCL  299 (305)
T ss_dssp             EEECTTSC-EEECCSS-EEEEECTT-S---CEEEEEECSS-CCCEEEECTT---------SCEEEEEETTEE
T ss_pred             EEECCCCC-EEEecCC-cEEEECCC-C---CEEEEEECCC-ceeEEEEeCC---------CCEEEEEcCCeE
Confidence            444  466 4445544 49999985 3   4455555444 5888999877         667777766643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.24  E-value=5.4e-09  Score=91.92  Aligned_cols=229  Identities=8%  Similarity=0.003  Sum_probs=139.5

Q ss_pred             EeeccccEEEEEE--cCC-EEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEc-CCeEEEeecCCC
Q 046226           88 VLKKDGQILCIAV--GNG-FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYG-DGKIRVWRSTWD  162 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~-dg~i~vwd~~~~  162 (434)
                      +..+........|  +++ +++++..++.|..|+. +++ ...+..+...+..++++++ .++++.. ++.|.+|+.. +
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            3344555677888  666 7788888899999997 444 3444455677899999987 5666654 5789999875 2


Q ss_pred             CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE----Eec-------------CCcEEEEEcCC
Q 046226          163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS----ASL-------------DKTIKVWRIRD  225 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~  225 (434)
                      . ...+.... .                ......+.++++.++|+++++    |..             .+.|..||..+
T Consensus       117 ~-~~~~~~~~-~----------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~  178 (305)
T 3dr2_A          117 Q-AHLLVGRY-A----------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG  178 (305)
T ss_dssp             C-EEEEECEE-T----------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred             C-EEEEEecc-C----------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence            2 22111000 0                012245778999999998886    432             25688888766


Q ss_pred             CeeEEEcccCccCeEEEEEcCCC-eEEEEeCC------CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226          226 SKCIETIQAHSEPINALVVADDG-VLYSASDD------ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL  298 (434)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  298 (434)
                      ++.....  .......++|+|++ .|+.+...      +.|.+||+....   .................++++++|+ |
T Consensus       179 g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~~~~~~pdgi~~d~~G~-l  252 (305)
T 3dr2_A          179 SPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFASVPDGLPDGFCVDRGGW-L  252 (305)
T ss_dssp             CCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEECCSSSCCCSEEECTTSC-E
T ss_pred             CcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEECCCCCCCeEEECCCCC-E
Confidence            6644333  34566889999999 56666554      789999876211   1111111111234456789999998 5


Q ss_pred             EEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCc
Q 046226          299 YGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADST  350 (434)
Q Consensus       299 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~  350 (434)
                      ++++.+ .|.+||.... ...    .+..+. .+.+++|  +++.|+.++.++.
T Consensus       253 wv~~~~-gv~~~~~~g~-~~~----~~~~~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          253 WSSSGT-GVCVFDSDGQ-LLG----HIPTPG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             EECCSS-EEEEECTTSC-EEE----EEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             EEecCC-cEEEECCCCC-EEE----EEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence            555544 4999986422 111    111222 3556666  4567777766543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.23  E-value=2.7e-08  Score=88.29  Aligned_cols=215  Identities=8%  Similarity=-0.058  Sum_probs=132.7

Q ss_pred             EEEEEE--c-CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226           95 ILCIAV--G-NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKL  170 (434)
Q Consensus        95 v~~~~~--~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~  170 (434)
                      ..+.+|  + +.+++++..++.|.+||..+++... +. ....+.+++++++ .+++++.+ .|.+||..+++.....  
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~--  125 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHA--  125 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEE--
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEe--
Confidence            456677  3 5677777788999999998775432 22 3457999999887 66666654 4889997655422111  


Q ss_pred             eeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec------CCcEEEEEcCCCeeEEEcccCccCeEEEEE
Q 046226          171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL------DKTIKVWRIRDSKCIETIQAHSEPINALVV  244 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  244 (434)
                       ....               ......+.+++++++|+++++...      .+.|..+|  +++.. .+..+......++|
T Consensus       126 -~~~~---------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~  186 (326)
T 2ghs_A          126 -ELES---------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICF  186 (326)
T ss_dssp             -CSST---------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEE
T ss_pred             -eCCC---------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEE
Confidence             0000               012245889999999987665432      24566666  45433 33333445778999


Q ss_pred             cCCC-eE-EEEeCCCeEEEEecccccC-c-ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc
Q 046226          245 ADDG-VL-YSASDDATVRVWRRYFYSE-N-QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ  320 (434)
Q Consensus       245 ~~~~-~l-~s~~~dg~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  320 (434)
                      ++++ .+ ++...++.|.+||+....+ . ........+......+..++++++|++.++...++.|.+||... ...  
T Consensus       187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g-~~~--  263 (326)
T 2ghs_A          187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG-NHI--  263 (326)
T ss_dssp             CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC-CEE--
T ss_pred             cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC-CEE--
Confidence            9999 44 4455678999999751111 1 11122222333334567899999998777776778999998632 111  


Q ss_pred             ccCcccCcccceEEEEee
Q 046226          321 YGGALQGHTHAVMCLASV  338 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~~  338 (434)
                        ..+..+...+.+++|.
T Consensus       264 --~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          264 --ARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             --EEEECSCSBEEEEEEE
T ss_pred             --EEEECCCCCcEEEEEe
Confidence              1222344467888876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.22  E-value=7.9e-08  Score=86.70  Aligned_cols=245  Identities=7%  Similarity=-0.062  Sum_probs=150.0

Q ss_pred             ceeeeEEEeeccccEEEEEE--cCCEEEEEe----------CCCeEEEecCCCceeEeeccCC-------CccEEEEEEe
Q 046226           81 SYRCISSVLKKDGQILCIAV--GNGFIYTGS----------DSNVIRIWKQPEFTECGRLKAK-------TSMVVAMEVS  141 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~~  141 (434)
                      +++.+.++.....+  .+++  +|++|+++.          .++.|.+||..+.+.+.++...       ...-..++++
T Consensus        56 t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s  133 (373)
T 2mad_H           56 SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT  133 (373)
T ss_pred             CCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC
Confidence            34445555433344  7777  899999886          3678999999998887776432       1234578999


Q ss_pred             CC--EEEEEEc--CCeEEEeecCCCCCcee-eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecC
Q 046226          142 HD--RVYAAYG--DGKIRVWRSTWDNGVKH-VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLD  215 (434)
Q Consensus       142 ~~--~l~~~s~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d  215 (434)
                      |+  +|+++..  ++.|.++| .+++.+.. +.                       ...   ++.+.+++ +.+++.+.|
T Consensus       134 pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-----------------------~~~---~~~~~~~~~~~~~~~~~d  186 (373)
T 2mad_H          134 PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-----------------------SPT---CYHIHPGAPSTFYLLCAQ  186 (373)
T ss_pred             CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-----------------------CCc---eEEEEeCCCceEEEEcCC
Confidence            97  7777764  58899999 87765444 31                       111   23445554 455667789


Q ss_pred             CcEEEEEcCCCeeEEEcc-----cCccCe-EEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc-------
Q 046226          216 KTIKVWRIRDSKCIETIQ-----AHSEPI-NALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-------  281 (434)
Q Consensus       216 g~i~vwd~~~~~~~~~~~-----~~~~~v-~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------  281 (434)
                      |.+.++|. +++.+....     ....++ ....+.+++ .++..+.++.+.+.|+.....    .....+..       
T Consensus       187 g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~----~v~~~~~~~~~~~~~  261 (373)
T 2mad_H          187 GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----TNKAPIDALSGGRKA  261 (373)
T ss_pred             CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc----eEeeeeeecCCcccc
Confidence            99999999 877663322     111121 223445554 444444678899998752111    11111110       


Q ss_pred             ---cccCeEEEEEecCCCEEEEEcC----------CCeEEEEEcCcccccccccCcccCcccceEEEEe--eCC-EEEEe
Q 046226          282 ---KYSPVKTLTLTLDDGLLYGGCT----------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VAN-YVISG  345 (434)
Q Consensus       282 ---~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~  345 (434)
                         .......+.++++++.++++..          ++.|.++|+.+.+....+  .. ++  ...++.+  +|+ +++++
T Consensus       262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i--~~-g~--~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI--SL-GH--DVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE--EC-CC--CcCeEEECCCCCeEEEEE
Confidence               1123445788999998888653          357999998755443332  11 22  2445555  577 77777


Q ss_pred             c-CCCcEEEEeccCCCceeeEEE
Q 046226          346 S-ADSTSRVWAREQDGRHTMLAV  367 (434)
Q Consensus       346 ~-~dg~i~iwd~~~~~~~~~~~~  367 (434)
                      . .++.|.+||+.++   +.+..
T Consensus       337 ~~~~~~V~ViD~~t~---~vv~~  356 (373)
T 2mad_H          337 SAGTEVLHIYDAGAG---DQDQS  356 (373)
T ss_pred             cCCCCeEEEEECCCC---CEEee
Confidence            6 5899999999987   44444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.22  E-value=2e-09  Score=105.81  Aligned_cols=240  Identities=12%  Similarity=0.062  Sum_probs=142.3

Q ss_pred             CCCccEEEEEEeCC--EEEEE-Ec----CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE
Q 046226          130 AKTSMVVAMEVSHD--RVYAA-YG----DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI  202 (434)
Q Consensus       130 ~~~~~v~~l~~~~~--~l~~~-s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  202 (434)
                      +|...+..++|+||  +++.+ +.    +..|++||+.+++..... +                      +......++|
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~----------------------~~~k~~~~~W  182 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-L----------------------KDVKFSGISW  182 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-E----------------------EEEESCCCEE
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-c----------------------CCceeccEEE
Confidence            35567888999998  45433 22    257999999877643221 0                      1111356789


Q ss_pred             ecCCCEEEEEecCC-------------cEEEEEcCCCe----eEEEccc-CccCeEEEEEcCCC-eE-EEEeC---CCeE
Q 046226          203 NVSDDTLYSASLDK-------------TIKVWRIRDSK----CIETIQA-HSEPINALVVADDG-VL-YSASD---DATV  259 (434)
Q Consensus       203 ~~~~~~l~s~~~dg-------------~i~vwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~-~l-~s~~~---dg~i  259 (434)
                      + |++.|+.+..+.             .|++|++.++.    .+..... |...+..+.++||+ +| ++...   +..|
T Consensus       183 s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i  261 (693)
T 3iuj_A          183 L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL  261 (693)
T ss_dssp             E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred             e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence            9 999999888774             39999998764    3333333 44567889999999 44 43332   3589


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-C---CCeEEEEEcCcccccccccCcccCcccceEEE
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-T---DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL  335 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  335 (434)
                      .++|+....  ....   .+..+....... +++++..|+..+ .   .+.|..+|+...... .. ..+..|...+..+
T Consensus       262 ~~~d~~~~~--~~~~---~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~-~~l~~~~~~~~~~  333 (693)
T 3iuj_A          262 YVKDLSQEN--APLL---TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HW-RDLIPERQQVLTV  333 (693)
T ss_dssp             EEEETTSTT--CCCE---EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GC-EEEECCCSSCEEE
T ss_pred             EEEECCCCC--CceE---EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cc-EEEecCCCCEEEE
Confidence            999986221  1111   222333444444 566666555443 3   368999998754321 00 1222333333377


Q ss_pred             EeeCCEEEEecC-CC--cEEEEeccCCCceeeEEEee-ccccceeEEEEeecccCCCCCCcccEEEEeecC----CeEEE
Q 046226          336 ASVANYVISGSA-DS--TSRVWAREQDGRHTMLAVLV-GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD----GVLKM  407 (434)
Q Consensus       336 ~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D----g~v~i  407 (434)
                      ++++++|+.... ++  .|++|++..+    ....+. ...+.+..+.++++         +..|+....+    ++|+.
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d~~g~----~~~~l~~p~~~~~~~~~~~~d---------~~~l~~~~ss~~tP~~l~~  400 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFDYEGK----RVREVALPGLGSVSGFNGKHD---------DPALYFGFENYAQPPTLYR  400 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTSC----EEEEECCSSSSEEEECCCCTT---------CSCEEEEEECSSSCCEEEE
T ss_pred             EEECCEEEEEEEECCeeEEEEEECCCC----eeEEeecCCCceEEeeecCCC---------CCEEEEEecCCCCCCEEEE
Confidence            788887766654 44  6889998753    223332 23445666666666         4544444333    88999


Q ss_pred             EecCCCC
Q 046226          408 WRVTRPK  414 (434)
Q Consensus       408 w~~~~~~  414 (434)
                      ||+.+++
T Consensus       401 ~d~~~g~  407 (693)
T 3iuj_A          401 FEPKSGA  407 (693)
T ss_dssp             ECTTTCC
T ss_pred             EECCCCe
Confidence            9987765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.20  E-value=5.2e-09  Score=93.42  Aligned_cols=267  Identities=10%  Similarity=0.008  Sum_probs=159.2

Q ss_pred             cceeeeEEEeeccccEEEEEE--cCCEEEEEe----------CCCeEEEecCCCceeEeeccCCC-------ccEEEEEE
Q 046226           80 SSYRCISSVLKKDGQILCIAV--GNGFIYTGS----------DSNVIRIWKQPEFTECGRLKAKT-------SMVVAMEV  140 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~l~~  140 (434)
                      .+++.+.++..-..+ . +++  +|++|+++.          .++.|.+||..+++.+.++....       ..-..+++
T Consensus        67 ~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~  144 (386)
T 3sjl_D           67 EAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL  144 (386)
T ss_dssp             TTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred             CCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence            345666666554555 3 777  888888775          36789999999999888875321       23456889


Q ss_pred             eCC--EEEEEEc--CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC
Q 046226          141 SHD--RVYAAYG--DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK  216 (434)
Q Consensus       141 ~~~--~l~~~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  216 (434)
                      +|+  +++++..  ++.|.++|+.+.+.+..+.+.                       + + ...+....+.+++.+.||
T Consensus       145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-----------------------g-~-~~~~P~g~~~~~~~~~DG  199 (386)
T 3sjl_D          145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-----------------------D-C-YHIFPTAPDTFFMHCRDG  199 (386)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-----------------------S-E-EEEEEEETTEEEEEETTS
T ss_pred             cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-----------------------C-c-ceeecCCCceeEEECCCC
Confidence            997  6777764  689999999988776666321                       0 1 112222345666777788


Q ss_pred             cEEEEEcCC-CeeEEEcccC----ccCeE-EEEE-cCCCeEEEEeCCCeEEEEecccccCcceeEEEEEec-------cc
Q 046226          217 TIKVWRIRD-SKCIETIQAH----SEPIN-ALVV-ADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLT-------AK  282 (434)
Q Consensus       217 ~i~vwd~~~-~~~~~~~~~~----~~~v~-~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~  282 (434)
                      .+.+.++.+ ++.......+    ..++. ...| .++|.++..+.+|.|.+.|+.......... ...+.       ..
T Consensus       200 ~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~-~~~~~~~~~~~g~~  278 (386)
T 3sjl_D          200 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA-VEALTEAERADGWR  278 (386)
T ss_dssp             CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC-EESSCHHHHHTTEE
T ss_pred             CEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecc-eecccccccccccc
Confidence            888888765 4543211111    12221 2345 367755557778999999986211101111 10000       01


Q ss_pred             ccCeEEEEEecCCCEEEEEcC----------CCeEEEEEcCcccccccccCcccCcccceEEEEe--eCC-EEEE-ecCC
Q 046226          283 YSPVKTLTLTLDDGLLYGGCT----------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VAN-YVIS-GSAD  348 (434)
Q Consensus       283 ~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s-~~~d  348 (434)
                      ......++++++++.+++...          ...|.++|+.+.+....+.   -++  .+..+.+  +++ +|++ ...+
T Consensus       279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~---vg~--~~~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---MGH--EIDSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---EEE--EECEEEECSSSSCEEEEEETTT
T ss_pred             CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE---CCC--CcceEEECCCCCeEEEEEcCCC
Confidence            123445778999998888643          2579999987655433321   122  3445555  565 5555 4568


Q ss_pred             CcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          349 STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       349 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      +.|.++|..++   +.+..+..- +.-..+.+++|
T Consensus       354 ~~VsViD~~t~---k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          354 KTLYIHDAESG---EELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             TEEEEEETTTC---CEEEEECCC-CSSCCEEEECC
T ss_pred             CeEEEEECCCC---cEEEEecCC-CCCceeEECCc
Confidence            99999999988   555554332 22234455543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.17  E-value=6.7e-10  Score=98.86  Aligned_cols=258  Identities=14%  Similarity=0.071  Sum_probs=160.6

Q ss_pred             EEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccC
Q 046226           98 IAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPK  175 (434)
Q Consensus        98 ~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (434)
                      ... .+..|+.++.++.|..|| .+++.......+...+.++...++ .+++++.+  |..+|. +++.......     
T Consensus        25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~-----   95 (330)
T 3hxj_A           25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDT-----   95 (330)
T ss_dssp             CEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----
T ss_pred             ceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEEC-----
Confidence            344 466778888889999999 888887766655555677777655 66666655  777875 3333332211     


Q ss_pred             CCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeC
Q 046226          176 TGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD  255 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~  255 (434)
                                       .........+.  +..++.++.++.|..+|.. ++.......+...+.++...+++.++.++.
T Consensus        96 -----------------~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~  155 (330)
T 3hxj_A           96 -----------------KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSN  155 (330)
T ss_dssp             ----------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECT
T ss_pred             -----------------CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcC
Confidence                             11111122222  5678888889999999998 777777766666677777877887888888


Q ss_pred             CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEE
Q 046226          256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL  335 (434)
Q Consensus       256 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  335 (434)
                      ++.|..+|..   ..    ...........+.++...+++.+. .++  +.|..|| .........    ......+.++
T Consensus       156 ~~~l~~~d~~---g~----~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~----~~~~~~~~~~  220 (330)
T 3hxj_A          156 DNYLYAINPD---GT----EKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNF----YAGYWTVTRP  220 (330)
T ss_dssp             TSEEEEECTT---SC----EEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEE----CCSSCCCSCC
T ss_pred             CCEEEEECCC---CC----EeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEE----ccCCcceece
Confidence            8999999865   11    111222233456667777777644 444  7789998 433222222    1222345666


Q ss_pred             EeeCC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          336 ASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       336 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      ..+++ .|..++.++.|..+|. ++   ..+..+......+..+.+.++          ..|..++.+|.|..+|. +++
T Consensus       221 ~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~----------g~l~v~t~~ggl~~~d~-~g~  285 (330)
T 3hxj_A          221 AISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNT----------DTIYFGSYDGHLYAINP-DGT  285 (330)
T ss_dssp             EECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTT----------SCEEEECTTCEEEEECT-TSC
T ss_pred             EECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCC----------CeEEEecCCCCEEEECC-CCc
Confidence            66644 6777777888888874 33   333444443333444444433          35777888888999885 444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.14  E-value=5.6e-09  Score=102.68  Aligned_cols=203  Identities=13%  Similarity=0.071  Sum_probs=126.1

Q ss_pred             CcCCCeEEEEEecCCCEEEEE-----ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCC--------
Q 046226          192 KHMGPITSIAINVSDDTLYSA-----SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDA--------  257 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg--------  257 (434)
                      ++...+..++|+|||++|+.+     +....|++||+.+++.+... .+......++|+ |+ .|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            355678899999999998843     33357999999999865431 111113577899 88 677776663        


Q ss_pred             -----eEEEEecccccCcceeEEEEEecc-cccCeEEEEEecCCCEEEEEcC----CCeEEEEEcCcccccccccCcccC
Q 046226          258 -----TVRVWRRYFYSENQLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGCT----DGYIHYWHKGWFSAQLQYGGALQG  327 (434)
Q Consensus       258 -----~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~  327 (434)
                           .|++|++..  .......+..... +......+.++|||++|+....    +..|+++|+.........   +..
T Consensus       204 ~~~~~~v~~~~lgt--~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~---l~~  278 (693)
T 3iuj_A          204 RTDQHKVYFHRLGT--AQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT---VQG  278 (693)
T ss_dssp             -CCCCEEEEEETTS--CGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE---EEC
T ss_pred             cCCCcEEEEEECCC--CcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE---EeC
Confidence                 488898762  2222233444333 4455788999999998865432    358999998654322221   222


Q ss_pred             cccceEE-EEeeCCEEEEec-CC---CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee-c
Q 046226          328 HTHAVMC-LASVANYVISGS-AD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS-L  401 (434)
Q Consensus       328 ~~~~v~~-~~~~~~~l~s~~-~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~  401 (434)
                      +...... +..+++.|+..+ .+   +.|..+|+.++.. .....+..|...+.  .|+++         ++.|+... .
T Consensus       279 ~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~---------g~~lv~~~~~  346 (693)
T 3iuj_A          279 DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSG---------SGYLFAEYMV  346 (693)
T ss_dssp             SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEE---------TTEEEEEEEE
T ss_pred             CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEE---------CCEEEEEEEE
Confidence            3333322 455666544433 33   6799999987632 11234556666655  78888         66665554 4


Q ss_pred             CC--eEEEEecCCC
Q 046226          402 DG--VLKMWRVTRP  413 (434)
Q Consensus       402 Dg--~v~iw~~~~~  413 (434)
                      ||  .|++|++..+
T Consensus       347 ~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          347 DATARVEQFDYEGK  360 (693)
T ss_dssp             TTEEEEEEECTTSC
T ss_pred             CCeeEEEEEECCCC
Confidence            54  6888988743

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.12  E-value=3.3e-11  Score=108.96  Aligned_cols=187  Identities=12%  Similarity=0.107  Sum_probs=102.9

Q ss_pred             EeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEE
Q 046226          140 VSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIK  219 (434)
Q Consensus       140 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  219 (434)
                      ...+.+++++.||.|..||..+++.......                        +.+.+..+..++..+++++.||.|+
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~------------------------~~~~s~p~~~~g~~~v~~s~dg~l~   62 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE------------------------DPVLQVPTHVEEPAFLPDPNDGSLY   62 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC------------------------CCSCCCC-----CCEEECTTTCCEE
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC------------------------CCceecceEcCCCEEEEeCCCCEEE
Confidence            3456888899999999999888877666531                        2233333445677788888999999


Q ss_pred             EEEcCCCeeEEEcccCcc-CeE-EEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226          220 VWRIRDSKCIETIQAHSE-PIN-ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL  297 (434)
Q Consensus       220 vwd~~~~~~~~~~~~~~~-~v~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  297 (434)
                      .||.++++.+..+..+.. .+. +..+..++.+++++.|+.|+.||....  .    ....+..+.    ...++|++..
T Consensus        63 a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG--~----~~w~~~~~~----~~~~~p~~~~  132 (369)
T 2hz6_A           63 TLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTG--E----KQQTLSSAF----ADSLSPSTSL  132 (369)
T ss_dssp             EC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------------
T ss_pred             EEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCC--c----EEEEecCCC----cccccccCCE
Confidence            999999988777654321 111 111123457888889999999998722  1    121222111    1345668889


Q ss_pred             EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC-----CEEEEecCCCcEEEEeccCCCceeeEEEee
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA-----NYVISGSADSTSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  369 (434)
                      +++++.|+.|+.||.++.+......  ...    .....+++     ..+++++.||.|+.||..++   +.+..+.
T Consensus       133 v~~~~~dg~v~a~d~~tG~~~W~~~--~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~  200 (369)
T 2hz6_A          133 LYLGRTEYTITMYDTKTRELRWNAT--YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQN  200 (369)
T ss_dssp             EEEEEEEEEEECCCSSSSSCCCEEE--EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEE
T ss_pred             EEEEecCCEEEEEECCCCCEEEeEe--ccc----ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEec
Confidence            9999999999999987665444321  111    11122233     56777889999999999988   4444444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=2.9e-08  Score=96.79  Aligned_cols=194  Identities=11%  Similarity=0.109  Sum_probs=121.4

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCcc-----------EEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeE
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSM-----------VVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~  169 (434)
                      .+..|++++.++.|..+|..+++.+.++......           -..+.+..+.+++++.|+.|..+|..+++.+....
T Consensus        65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            5777888888999999999999998877543211           12345566789999999999999999988877664


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec------CCcEEEEEcCCCeeEEEcccCc-------
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL------DKTIKVWRIRDSKCIETIQAHS-------  236 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~-------  236 (434)
                      .......             ......++    +  .+..++++..      +|.|..+|.++|+.+..+....       
T Consensus       145 ~~~~~~~-------------~~~~~~P~----v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~  205 (668)
T 1kv9_A          145 TTDPAKP-------------YSITGAPR----V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY  205 (668)
T ss_dssp             CSCTTSS-------------CBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             cCCCCCc-------------ceecCCCE----E--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence            3210000             00011111    1  1345555543      5899999999999988775310       


Q ss_pred             ------------------------cCeEEEEEcCCC-eEEEEeCCCe-------------------EEEEecccccCcce
Q 046226          237 ------------------------EPINALVVADDG-VLYSASDDAT-------------------VRVWRRYFYSENQL  272 (434)
Q Consensus       237 ------------------------~~v~~~~~~~~~-~l~s~~~dg~-------------------i~iwd~~~~~~~~~  272 (434)
                                              .....+++.++. +++.+..++.                   |..+|..  ++...
T Consensus       206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~--tG~~~  283 (668)
T 1kv9_A          206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD--TGKLA  283 (668)
T ss_dssp             SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT--TCCEE
T ss_pred             cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC--CCcee
Confidence                                    011236777765 7777776663                   8888876  22222


Q ss_pred             eEEEEEecccc-------cCeEEEEEecCCC---EEEEEcCCCeEEEEEcCcccc
Q 046226          273 HTLILTLTAKY-------SPVKTLTLTLDDG---LLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       273 ~~~~~~~~~~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      ...  ....|.       .+.....+..+|+   .++.++.+|.++++|..+.+.
T Consensus       284 W~~--~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          284 WHY--QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             EEE--ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             eEe--ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence            221  221121       2233333334665   688999999999999876543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.07  E-value=2.5e-11  Score=109.75  Aligned_cols=186  Identities=12%  Similarity=0.079  Sum_probs=101.0

Q ss_pred             CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226          205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY  283 (434)
Q Consensus       205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  283 (434)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+..++ .+++++.||.|+.||.....  ....    ...+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~--~~w~----~~~~~   79 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE--GLTK----LPFTI   79 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C--CSEE----CSCCH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc--eeee----eeccC
Confidence            578899999999999999999999988876  455555555666 77777899999999986221  1111    11110


Q ss_pred             -cCeE-EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCc
Q 046226          284 -SPVK-TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGR  361 (434)
Q Consensus       284 -~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  361 (434)
                       ..+. +..+. .+..+++++.++.|+.||..+.+....+.    .+. . ..+..+++.+++++.|+.|+.||..+++ 
T Consensus        80 ~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~----~~~-~-~~~~p~~~~v~~~~~dg~v~a~d~~tG~-  151 (369)
T 2hz6_A           80 PELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS----SAF-A-DSLSPSTSLLYLGRTEYTITMYDTKTRE-  151 (369)
T ss_dssp             HHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSS-
T ss_pred             ccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec----CCC-c-ccccccCCEEEEEecCCEEEEEECCCCC-
Confidence             0000 00111 34567888889999999987665554432    121 1 1223367788999999999999999874 


Q ss_pred             eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          362 HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       362 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                        .+..+..+.  ....++..+.     .. ...++.++.||.|+.||..+++..
T Consensus       152 --~~W~~~~~~--~~~~~~~~~~-----~~-~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          152 --LRWNATYFD--YAASLPEDDV-----DY-KMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             --CCCEEEEEE--ECCBCCCCCT-----TC-CCCEEEEETSCEEEEECTTTCCEE
T ss_pred             --EEEeEeccc--ccCccccCCc-----cc-cceEEEECCCCEEEEEECCCCcEE
Confidence              222222111  1112222210     00 146778889999999999988754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.07  E-value=9.8e-08  Score=85.87  Aligned_cols=189  Identities=15%  Similarity=0.155  Sum_probs=124.1

Q ss_pred             CCEE-EEEeCCCeEEEecCCCc----eeEeecc-------CCCccEEEEEEeCCE-EEEEEcC------CeEEEeecCCC
Q 046226          102 NGFI-YTGSDSNVIRIWKQPEF----TECGRLK-------AKTSMVVAMEVSHDR-VYAAYGD------GKIRVWRSTWD  162 (434)
Q Consensus       102 ~~~l-~tg~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~l~~~~~~-l~~~s~d------g~i~vwd~~~~  162 (434)
                      +++| +.|..++.|.|+|+.+.    +....+.       .....-..+...|+. ++++..+      |.|.++|..+.
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCC
Confidence            4544 55667889999998754    5555552       112244567778884 4444444      78999999888


Q ss_pred             CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-------------------cCCcEEEEEc
Q 046226          163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-------------------LDKTIKVWRI  223 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------------------~dg~i~vwd~  223 (434)
                      +.+..+....                   +-..--..+.|+|+++.+++..                   .+..|.+||+
T Consensus       175 ~v~~~~~~~~-------------------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~  235 (462)
T 2ece_A          175 EPLGKWEIDR-------------------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL  235 (462)
T ss_dssp             CEEEECCSBC-------------------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred             eEEEEEccCC-------------------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence            7776664211                   0112234678899999888885                   3689999999


Q ss_pred             CCCeeEEEcccC--ccCeEEEEE--cCCC-eEE-EEe-----CCCeEEEEecccccCcceeEEEEE--eccc--------
Q 046226          224 RDSKCIETIQAH--SEPINALVV--ADDG-VLY-SAS-----DDATVRVWRRYFYSENQLHTLILT--LTAK--------  282 (434)
Q Consensus       224 ~~~~~~~~~~~~--~~~v~~~~~--~~~~-~l~-s~~-----~dg~i~iwd~~~~~~~~~~~~~~~--~~~~--------  282 (434)
                      .+++.+.++...  ......+.|  +|++ +++ ++-     .+++|.+|....  +  .......  +...        
T Consensus       236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g--~~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--G--KWNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--T--EEEEEEEEEECCEECCSSCCG
T ss_pred             CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--C--ceeEEEEEeCCCccccccccc
Confidence            999888887653  134455656  8998 444 444     677888877652  1  1111111  1110        


Q ss_pred             --------ccCeEEEEEecCCCEEEEEcC-CCeEEEEEcC
Q 046226          283 --------YSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKG  313 (434)
Q Consensus       283 --------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~  313 (434)
                              ......|.+++||++|+++.. .+.|.+||+.
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                    245778999999999988765 6899999986

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.05  E-value=9.5e-07  Score=75.82  Aligned_cols=244  Identities=10%  Similarity=0.031  Sum_probs=144.7

Q ss_pred             CEEEEEeCCCeEEEecCCCceeE-----eeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCCCceeeEeeecc
Q 046226          103 GFIYTGSDSNVIRIWKQPEFTEC-----GRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIP  174 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~  174 (434)
                      .+|+.+.. +.|+.+++......     ..+.........++++++  .|+.+. .++.|..++..........      
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~------   74 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII------   74 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE------
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE------
Confidence            45555553 47888887653321     111112345788999874  566555 4788999988654321111      


Q ss_pred             CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC-CeEEE
Q 046226          175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-GVLYS  252 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~s  252 (434)
                                      .........+++.+++..|+.+ ...+.|.+++++.................+++.++ +.|+.
T Consensus        75 ----------------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv  138 (267)
T 1npe_A           75 ----------------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYW  138 (267)
T ss_dssp             ----------------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEE
T ss_pred             ----------------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEE
Confidence                            0122457899999976666655 45678999998643322222222246689999995 55554


Q ss_pred             EeC---CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCcccCc
Q 046226          253 ASD---DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQGH  328 (434)
Q Consensus       253 ~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~  328 (434)
                      +..   .+.|..+++.   .... ...  ..........+++++++..|+.+ ...+.|.++|+........    ... 
T Consensus       139 ~~~~~~~~~I~~~~~d---g~~~-~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~~-  207 (267)
T 1npe_A          139 TDWNRDNPKIETSHMD---GTNR-RIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV----LEG-  207 (267)
T ss_dssp             EECCSSSCEEEEEETT---SCCC-EEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE----EEC-
T ss_pred             EECCCCCcEEEEEecC---CCCc-EEE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE----ecC-
Confidence            443   4688888775   1111 111  11223467899999987766555 4568999999864322111    111 


Q ss_pred             ccceEEEEeeCCEEEEec-CCCcEEEEeccCCCceeeEEEeeccc-cceeEEEEeec
Q 046226          329 THAVMCLASVANYVISGS-ADSTSRVWAREQDGRHTMLAVLVGHR-GPIRCAIAFLG  383 (434)
Q Consensus       329 ~~~v~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~  383 (434)
                      ......++.+++.|+.+. ..+.|.++|..++   +.+..+.... .....+++.|+
T Consensus       208 ~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g---~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          208 LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS---KEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             CCSEEEEEEETTEEEEEETTTTEEEEEETTTT---EEEEEECCSSCCCCCCEEEECS
T ss_pred             CCCceEEEEeCCEEEEEECCCCeEEEEeCCCC---CceEEEccccccccceeeecCc
Confidence            122356667766555544 5689999999887   5566654333 24677888887

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.03  E-value=2e-06  Score=86.10  Aligned_cols=290  Identities=11%  Similarity=0.091  Sum_probs=171.9

Q ss_pred             cccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccC-------CCccEEEEEEeCC-EEEEEEcCCeEEEeecCCC
Q 046226           92 DGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKA-------KTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWD  162 (434)
Q Consensus        92 ~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~  162 (434)
                      ...|.++.. ....|..|+.++-|.+||..+++.......       ....|.++...++ .+.+|+.+ -|.+||....
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~  292 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD  292 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC
Confidence            456888887 455677777655688899877654332211       2356999988876 78888876 5888886543


Q ss_pred             CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc------cCc
Q 046226          163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ------AHS  236 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~  236 (434)
                      .. ..+.  ..+..            ...-....|.++...++|. |..|+.++-|..|+..+.+...-..      ...
T Consensus       293 ~~-~~~~--~~~~~------------~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~  356 (795)
T 4a2l_A          293 SF-ASYS--SNPVE------------NGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSD  356 (795)
T ss_dssp             EE-EEEC--CCTTS------------TTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSC
T ss_pred             eE-EEEe--cCCCC------------CCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCC
Confidence            21 1110  00000            0001345799999888776 5667777779999876554222111      124


Q ss_pred             cCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEe-----cccccCeEEEEEecCCCEEEEEcCCCeEEEEE
Q 046226          237 EPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTL-----TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH  311 (434)
Q Consensus       237 ~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  311 (434)
                      ..|.++...+++.|..|+.++-|..||...   ..........     ......|.++...++++.|.+|+.++-|.+||
T Consensus       357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~---~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPIT---QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             SSEEEEEECTTSCEEEEESSSCEEEECTTT---CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CeeEEEEECCCCCEEEEECCCCeEEEcCCC---CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence            569999998888888888887899998651   1111110000     11235788999988888677788877899999


Q ss_pred             cCcccccccccCcccCcccceEEEEeeC-CEEEEecCCCcEEEEeccCCCceeeEEEe----eccccceeEEEEeecccC
Q 046226          312 KGWFSAQLQYGGALQGHTHAVMCLASVA-NYVISGSADSTSRVWAREQDGRHTMLAVL----VGHRGPIRCAIAFLGRFG  386 (434)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~  386 (434)
                      ....................|.++..+. ..|..|+. +-+.+||..++. .......    .-....|.++...++   
T Consensus       434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~---  508 (795)
T 4a2l_A          434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS-FTTIEKEKDGTPVVSKQITTLFRDSH---  508 (795)
T ss_dssp             TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE-EEECCBCTTCCBCCCCCEEEEEECTT---
T ss_pred             CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe-EEEccccccccccCCceEEEEEECCC---
Confidence            7643221111000012335688888763 34555555 458889987651 1111110    112356888877766   


Q ss_pred             CCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          387 EETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       387 ~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                            +.+.+ |+. +-|..|+..+++
T Consensus       509 ------g~lWi-gt~-~Gl~~~~~~~~~  528 (795)
T 4a2l_A          509 ------KRLWI-GGE-EGLSVFKQEGLD  528 (795)
T ss_dssp             ------CCEEE-EES-SCEEEEEEETTE
T ss_pred             ------CCEEE-EeC-CceEEEeCCCCe
Confidence                  55444 444 457788876543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.03  E-value=2.3e-07  Score=77.33  Aligned_cols=196  Identities=11%  Similarity=0.074  Sum_probs=131.6

Q ss_pred             ccceeeeEEEeecccc--EEEEEE-cCCEEEEEeCCC--eEEEecCCCceeEeeccCCCc-cEEEEEEeCCEEEEEEc-C
Q 046226           79 SSSYRCISSVLKKDGQ--ILCIAV-GNGFIYTGSDSN--VIRIWKQPEFTECGRLKAKTS-MVVAMEVSHDRVYAAYG-D  151 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~--v~~~~~-~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~l~~~s~-d  151 (434)
                      ...++.+.++ .|+..  ...+.| ++.++.+.+.+|  .|+++|+++++.+.++..... .-..+++..+.|+.+.. +
T Consensus        28 ~~~~~vv~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           28 IYDYQIVHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEEEEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS
T ss_pred             ccceEEEEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC
Confidence            4567777777 56544  477888 665556666665  999999999999888765433 23457778887777765 8


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  231 (434)
                      +.+.+||..+.+.+..+...                       .  ....+.++++.|+....++.|.++|..+.+.+..
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~-----------------------~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~  161 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYD-----------------------G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT  161 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECS-----------------------S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred             CEEEEEECccCcEEEEEECC-----------------------C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence            99999999888877776421                       1  1123335777787777688899999999988887


Q ss_pred             cccCc-----cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE-ec-------ccccCeEEEEEecCCCE
Q 046226          232 IQAHS-----EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT-LT-------AKYSPVKTLTLTLDDGL  297 (434)
Q Consensus       232 ~~~~~-----~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~-------~~~~~v~~~~~~~~~~~  297 (434)
                      +....     ..++.+.+. +| .++..-.+..|.+.|...  +......... +.       ......+.|+++|+++.
T Consensus       162 I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t--G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~  238 (262)
T 3nol_A          162 ITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPET--GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR  238 (262)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT--CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred             EEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCC--CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence            76421     335567776 66 444444678899999761  1111111110 10       11235689999998887


Q ss_pred             EEEEcC
Q 046226          298 LYGGCT  303 (434)
Q Consensus       298 l~~~~~  303 (434)
                      |++.+.
T Consensus       239 lfVTGK  244 (262)
T 3nol_A          239 LFVTGK  244 (262)
T ss_dssp             EEEEET
T ss_pred             EEEECC
Confidence            777664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.02  E-value=4.6e-07  Score=76.53  Aligned_cols=204  Identities=8%  Similarity=0.001  Sum_probs=137.8

Q ss_pred             cceeeeEEEeeccc--cEEEEEEcC-CEEEEEe-C--CCeEEEecCCCceeEeeccCCC-ccEEEEEEeCCEEEEEEc-C
Q 046226           80 SSYRCISSVLKKDG--QILCIAVGN-GFIYTGS-D--SNVIRIWKQPEFTECGRLKAKT-SMVVAMEVSHDRVYAAYG-D  151 (434)
Q Consensus        80 ~~~~~~~~~~~h~~--~v~~~~~~~-~~l~tg~-~--dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~l~~~s~-d  151 (434)
                      .+++.+.++ .|..  ....+.|++ ..|+.++ .  ++.|+++|+.+++.+..+.... .....+++..+.++.+.. +
T Consensus         7 ~~~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~   85 (266)
T 2iwa_A            7 YIVEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC
T ss_pred             cCceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC
Confidence            456677776 4554  367899922 4555553 2  5799999999999988865322 234567888887777766 7


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  231 (434)
                      +.+.++|..+.+.+..+...                      ...  ...+++|++.++++..++.|.++|.++.+.+..
T Consensus        86 ~~v~viD~~t~~v~~~i~~g----------------------~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~  141 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQ----------------------MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK  141 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECC----------------------SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred             CEEEEEECCCCcEEEEEECC----------------------CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            99999999877666655321                      011  123556888888777789999999999888877


Q ss_pred             cccCc-----cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccc-------------ccCeEEEEEe
Q 046226          232 IQAHS-----EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK-------------YSPVKTLTLT  292 (434)
Q Consensus       232 ~~~~~-----~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~  292 (434)
                      +....     ..++.+.+. ++ .++....++.|.+.|...      .+....+...             ......|+++
T Consensus       142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t------g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~  214 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD------GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD  214 (266)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT------CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred             EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC------CcEEEEEECCCcccccccccccccCceEEEEEc
Confidence            76422     246678888 67 444555678999999872      1222222111             1356899999


Q ss_pred             cCCCEE-EEEcCCCeEEEEEcCcc
Q 046226          293 LDDGLL-YGGCTDGYIHYWHKGWF  315 (434)
Q Consensus       293 ~~~~~l-~~~~~dg~i~i~d~~~~  315 (434)
                      |+++.+ +++...+.|...++...
T Consensus       215 ~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          215 QENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCCCEEEEECCCCCeEEEEEEecc
Confidence            987654 55567889999887543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.02  E-value=1e-07  Score=86.60  Aligned_cols=249  Identities=10%  Similarity=0.026  Sum_probs=152.2

Q ss_pred             cceeeeEEEeeccccEEEEEE--cCCEEEEEe----------CCCeEEEecCCCceeEeeccCC-------CccEEEEEE
Q 046226           80 SSYRCISSVLKKDGQILCIAV--GNGFIYTGS----------DSNVIRIWKQPEFTECGRLKAK-------TSMVVAMEV  140 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~  140 (434)
                      .+++.+.++..-..+  .+++  ++++|+++.          .++.|.++|..+++.+.++...       ...-..+.+
T Consensus       107 ~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~  184 (426)
T 3c75_H          107 STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL  184 (426)
T ss_dssp             TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred             CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence            455566666554455  6777  888888876          4679999999999988876532       123456889


Q ss_pred             eCC--EEEEEEc--CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecC
Q 046226          141 SHD--RVYAAYG--DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLD  215 (434)
Q Consensus       141 ~~~--~l~~~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d  215 (434)
                      +|+  +++++..  ++.|.+.|+.+.+.+..+.+.                     .     +....|++ ..+++.+.|
T Consensus       185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~---------------------g-----~~~~~p~g~~~~v~~~~d  238 (426)
T 3c75_H          185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP---------------------D-----CYHIFPASPTVFYMNCRD  238 (426)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---------------------S-----EEEEEEEETTEEEEEETT
T ss_pred             cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC---------------------C-----ceeeccCCCcEEEEEcCC
Confidence            997  7777764  688999999888766665421                     0     01222332 445556667


Q ss_pred             CcEEEEEcCCCeeEEE----cccCccCe-EEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc--------
Q 046226          216 KTIKVWRIRDSKCIET----IQAHSEPI-NALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA--------  281 (434)
Q Consensus       216 g~i~vwd~~~~~~~~~----~~~~~~~v-~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------  281 (434)
                      |.+.+.+..+++....    +.....++ ..+.+.+++ .++.....+.|.+.|+....    ......+..        
T Consensus       239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~----~~v~~~~~~~~~~~i~~  314 (426)
T 3c75_H          239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG----ATFRAPIEALTEAERAD  314 (426)
T ss_dssp             SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC----EEECCCEESSCTTTGGG
T ss_pred             CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc----eEEeeeeeecccccccc
Confidence            7777777655544321    21111221 234667777 55556678899999875111    111110000        


Q ss_pred             --cccCeEEEEEecCCCEEEEEcC----------CCeEEEEEcCcccccccccCcccCcccceEEEEe--eCC-EEEEec
Q 046226          282 --KYSPVKTLTLTLDDGLLYGGCT----------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VAN-YVISGS  346 (434)
Q Consensus       282 --~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~  346 (434)
                        .......++++++++.+++...          ++.|.++|+.+.+....+.  . +.  ....+.+  +++ ++++..
T Consensus       315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~--v-g~--~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE--L-GH--EIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--E-EE--EECEEEECCSSSCEEEEEE
T ss_pred             ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE--C-CC--CcCeEEEccCCCEEEEEEc
Confidence              0112223689999988777642          3579999987654433321  1 11  2445555  577 777777


Q ss_pred             -CCCcEEEEeccCCCceeeEEEe
Q 046226          347 -ADSTSRVWAREQDGRHTMLAVL  368 (434)
Q Consensus       347 -~dg~i~iwd~~~~~~~~~~~~~  368 (434)
                       .++.|.++|+.+.   +.+..+
T Consensus       390 ~~s~~VsVID~~t~---kvv~tI  409 (426)
T 3c75_H          390 AGTQTLHIYDAATG---EELRSV  409 (426)
T ss_dssp             TTTTEEEEEETTTC---CEEEEE
T ss_pred             CCCCeEEEEECCCC---CEEEEe
Confidence             5999999999998   556554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.00  E-value=2.4e-07  Score=77.22  Aligned_cols=193  Identities=10%  Similarity=0.086  Sum_probs=127.0

Q ss_pred             cceeeeEEEeecccc--EEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCc-cEEEEEEeCCEEEEEEc-CCeE
Q 046226           80 SSYRCISSVLKKDGQ--ILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS-MVVAMEVSHDRVYAAYG-DGKI  154 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~--v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~l~~~s~-dg~i  154 (434)
                      ...+.+.++ .|+..  ...+.| ++.+.++.+.+|.|+++|+++++.+..+ .... .-..+++..+.|+.+.. ++.+
T Consensus        41 ~~~~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           41 RVAHIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEE
T ss_pred             cceEEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEE
Confidence            344556665 56543  478888 5566667777889999999999988877 3222 23457888886666654 8999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  234 (434)
                      .+||..+.+.+..+..                       ...-..++  ++++.|+.+..++.|.++|.++.+.+..+..
T Consensus       119 ~V~D~~Tl~~~~ti~~-----------------------~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          119 FTWSGMPPQRERTTRY-----------------------SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             EEEETTTTEEEEEEEC-----------------------SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EEEECCcCcEEEEEeC-----------------------CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            9999988877776642                       11112333  5678888877789999999999998887764


Q ss_pred             Cc-----cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE-e--------cccccCeEEEEEecCCCEEE
Q 046226          235 HS-----EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT-L--------TAKYSPVKTLTLTLDDGLLY  299 (434)
Q Consensus       235 ~~-----~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~--------~~~~~~v~~~~~~~~~~~l~  299 (434)
                      ..     ..++.+.|. +| .++..-.+..|.+.|..  .+.-...+... +        .....-.+.|+++|+++.|+
T Consensus       174 ~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~--TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf  250 (268)
T 3nok_A          174 KLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA--TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF  250 (268)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT--TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred             CCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC--CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence            22     245677777 66 44444467889999986  22111111111 0        01223568999999766555


Q ss_pred             EEc
Q 046226          300 GGC  302 (434)
Q Consensus       300 ~~~  302 (434)
                      +.+
T Consensus       251 VTG  253 (268)
T 3nok_A          251 MTG  253 (268)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.95  E-value=1.3e-06  Score=83.41  Aligned_cols=262  Identities=12%  Similarity=0.012  Sum_probs=149.6

Q ss_pred             EEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCc----cEE-EEEEeCCEEEEEEc------CCeEEEeecCCCCCce
Q 046226           98 IAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS----MVV-AMEVSHDRVYAAYG------DGKIRVWRSTWDNGVK  166 (434)
Q Consensus        98 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~----~v~-~l~~~~~~l~~~s~------dg~i~vwd~~~~~~~~  166 (434)
                      ++..+..|++++.|+.|..+|..+++.+........    .+. .-....+.+++++.      ++.|..+|..+++.+.
T Consensus       111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence            345677888999999999999999998876543220    111 11234567777765      7999999999988877


Q ss_pred             eeEeeecc-------CC--CCcee-EEEeccc-----cc-cCcCCCeEEEEEecCCCEEEEEecC---------------
Q 046226          167 HVKLATIP-------KT--GGAVR-NLIVGKD-----KM-MKHMGPITSIAINVSDDTLYSASLD---------------  215 (434)
Q Consensus       167 ~~~~~~~~-------~~--~~~~~-~~~~~~~-----~~-~~~~~~v~~~~~~~~~~~l~s~~~d---------------  215 (434)
                      ........       ..  ..... ....+..     .+ .+.......+++.++...++.+..+               
T Consensus       191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence            66532110       00  00000 0000000     00 0000111235666776777766532               


Q ss_pred             -CcEEEEEcCCCeeEEEcccCc----------cCeEEEEEcCCC----eEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226          216 -KTIKVWRIRDSKCIETIQAHS----------EPINALVVADDG----VLYSASDDATVRVWRRYFYSENQLHTLILTLT  280 (434)
Q Consensus       216 -g~i~vwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  280 (434)
                       +.|..+|.++|+.+..++...          .++. +....++    .++.++.+|.+.++|...  +.......  +.
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~t--G~~~w~~~--~~  345 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNREN--GNLIVAEK--VD  345 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTT--CCEEEEEE--SS
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCC--CCEEeeec--cc
Confidence             359999999999988776321          1221 2222355    366788899999999762  22111111  00


Q ss_pred             c-----------cccCe--------------------------EEEEEecCCCEEEEEc---------------------
Q 046226          281 A-----------KYSPV--------------------------KTLTLTLDDGLLYGGC---------------------  302 (434)
Q Consensus       281 ~-----------~~~~v--------------------------~~~~~~~~~~~l~~~~---------------------  302 (434)
                      .           ...++                          ..++++|+..++++..                     
T Consensus       346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~  425 (571)
T 2ad6_A          346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV  425 (571)
T ss_dssp             TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence            0           00011                          2467888777777653                     


Q ss_pred             ----------------CCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEE
Q 046226          303 ----------------TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLA  366 (434)
Q Consensus       303 ----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (434)
                                      .+|.|..||+.+.+...+.........   ..+...+..++.++.||.|+.||.+++   +.+.
T Consensus       426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~---~~~~t~gg~v~~g~~dg~l~a~D~~tG---~~lw  499 (571)
T 2ad6_A          426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG---GTLYTKGGLVWYATLDGYLKALDNKDG---KELW  499 (571)
T ss_dssp             CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS---BCEEETTTEEEEECTTSEEEEEETTTC---CEEE
T ss_pred             cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc---eeEEECCCEEEEEcCCCeEEEEECCCC---CEEE
Confidence                            347888888876655544321111111   122345778888999999999999998   5555


Q ss_pred             Eeec
Q 046226          367 VLVG  370 (434)
Q Consensus       367 ~~~~  370 (434)
                      .+..
T Consensus       500 ~~~~  503 (571)
T 2ad6_A          500 NFKM  503 (571)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            5543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=9.3e-07  Score=86.20  Aligned_cols=265  Identities=15%  Similarity=0.085  Sum_probs=156.3

Q ss_pred             EEcCCEEEEEeCCCeEEEecCCCceeEeeccCCC----ccEE-EEEEeCCEEEEEEc------CCeEEEeecCCCCCcee
Q 046226           99 AVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT----SMVV-AMEVSHDRVYAAYG------DGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        99 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~----~~v~-~l~~~~~~l~~~s~------dg~i~vwd~~~~~~~~~  167 (434)
                      ++.+..|++++.|+.|..+|..+++.+..+....    ..+. .-.+..+.++++..      +|.|..+|..+++.+..
T Consensus       114 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          114 ALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             EEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             EEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            4456788889999999999999999987765421    1111 11223556766654      58999999999988777


Q ss_pred             eEeee-ccCCCCceeEEEeccccc--------cCcCCCeEEEEEecCCCEEEEEecCC-------------------cEE
Q 046226          168 VKLAT-IPKTGGAVRNLIVGKDKM--------MKHMGPITSIAINVSDDTLYSASLDK-------------------TIK  219 (434)
Q Consensus       168 ~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~~~dg-------------------~i~  219 (434)
                      +.... .+........+......+        .++......+++.++..+++.+..++                   .|.
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            65321 010000000000000000        01222234578888888898887766                   399


Q ss_pred             EEEcCCCeeEEEccc--Cc-------cCeEEEEEcCCC----eEEEEeCCCeEEEEecccccCcceeEEE-------EEe
Q 046226          220 VWRIRDSKCIETIQA--HS-------EPINALVVADDG----VLYSASDDATVRVWRRYFYSENQLHTLI-------LTL  279 (434)
Q Consensus       220 vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~  279 (434)
                      .+|.++|+.+..++.  |.       .+.....+..++    .++.++.+|.+.++|....  .......       ..+
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG--~~l~~~~~~~~~w~~~~  351 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG--KLISAEKFGKVTWAEKV  351 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC--CEEEEEESSCCCSEEEE
T ss_pred             EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC--CEecccccccccccccc
Confidence            999999999888764  22       222222222344    4888999999999997622  1111000       000


Q ss_pred             ccc-cc------------------------CeEEEEEecCCCEEEEE---------------------------------
Q 046226          280 TAK-YS------------------------PVKTLTLTLDDGLLYGG---------------------------------  301 (434)
Q Consensus       280 ~~~-~~------------------------~v~~~~~~~~~~~l~~~---------------------------------  301 (434)
                      ... ..                        .-..++++|+..++++.                                 
T Consensus       352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (668)
T 1kv9_A          352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV  431 (668)
T ss_dssp             CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred             ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence            000 00                        01126777776666542                                 


Q ss_pred             ---cCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226          302 ---CTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       302 ---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                         ..+|.|..||+.+.+...+......   ..-..+...+.+++.++.||.+++||.+++   +.+..+...
T Consensus       432 p~~~~~g~l~A~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG---~~l~~~~~~  498 (668)
T 1kv9_A          432 PAAVVSGALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKG---EALWQFEAQ  498 (668)
T ss_dssp             CGGGCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEECS
T ss_pred             CCCCccceEEEEeCCCCcEEEEccCCCC---CcCceeEeCCCEEEEECCcccchhhhhhcC---hhheEecCC
Confidence               1347899999877665554321111   111234556889999999999999999998   555555543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.92  E-value=9.9e-06  Score=81.04  Aligned_cols=282  Identities=9%  Similarity=0.059  Sum_probs=167.6

Q ss_pred             ccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeecc------CCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCC
Q 046226           93 GQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLK------AKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNG  164 (434)
Q Consensus        93 ~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~  164 (434)
                      ..|.++.. ....|..|+.++-|..|+..+........      .....|.++...++ .|.+|+.++-|..|+..++..
T Consensus       310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF  389 (795)
T ss_dssp             SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE
T ss_pred             CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE
Confidence            56999988 45567788888888888865543221111      12456999988876 788899888899998764432


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc----cCccCeE
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ----AHSEPIN  240 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~  240 (434)
                      . .+...   ....          ...-....|.++...++++.|..|+.++-|.+||..+++...-..    .....|.
T Consensus       390 ~-~~~~~---~~~~----------~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~  455 (795)
T 4a2l_A          390 T-SYTLQ---EDES----------ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY  455 (795)
T ss_dssp             E-EECCC-------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE
T ss_pred             E-EEecC---CCCc----------ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE
Confidence            1 11000   0000          000124578999988888767778877789999998776433221    1345789


Q ss_pred             EEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEe----cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          241 ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTL----TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       241 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                      ++...+++.|..|+.+ -|.+||...    .........    ......|.++...++|++.+.. . +-|..||.....
T Consensus       456 ~i~~d~~g~lwigt~~-Gl~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~  528 (795)
T 4a2l_A          456 AILPDGEGNLWLGTLS-ALVRFNPEQ----RSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLD  528 (795)
T ss_dssp             EEEECSSSCEEEEESS-CEEEEETTT----TEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTE
T ss_pred             EEEECCCCCEEEEecC-ceeEEeCCC----CeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCe
Confidence            9998888866666664 488888651    111111100    1123568899888888755544 4 458888865432


Q ss_pred             cccccc---CcccCcccceEEEEeeC-CEEEEecCCCcEEEEeccCCCceeeEEEeecc----ccceeEEEEeecccCCC
Q 046226          317 AQLQYG---GALQGHTHAVMCLASVA-NYVISGSADSTSRVWAREQDGRHTMLAVLVGH----RGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       317 ~~~~~~---~~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~  388 (434)
                      .  .+.   .........|.++..+. ..|..|+.+ -|..||..++   . +..+...    ...|.++...++     
T Consensus       529 ~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~---~-~~~~~~~~gl~~~~i~~i~~d~~-----  596 (795)
T 4a2l_A          529 I--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDK---Q-IKRYNTTNGLPNNVVYGILEDSF-----  596 (795)
T ss_dssp             E--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTT---E-EEEECGGGTCSCSCEEEEEECTT-----
T ss_pred             E--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCC---c-EEEeCCCCCCchhheEEEEECCC-----
Confidence            2  111   11112345688888763 244445544 5788887764   2 2222211    235777776665     


Q ss_pred             CCCcccEEEEeecCCeEEEEecCCC
Q 046226          389 TEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       389 ~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                          |.+.+++ . +-|..|+..+.
T Consensus       597 ----g~lWi~t-~-~Gl~~~~~~~~  615 (795)
T 4a2l_A          597 ----GRLWLST-N-RGISCFNPETE  615 (795)
T ss_dssp             ----SCEEEEE-T-TEEEEEETTTT
T ss_pred             ----CCEEEEc-C-CceEEEcCCCC
Confidence                6655544 3 45666776644

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.89  E-value=1.3e-06  Score=83.30  Aligned_cols=115  Identities=10%  Similarity=0.053  Sum_probs=76.1

Q ss_pred             cCCEEEEEeC-CCeEEEecC-CCceeEeeccCCCc-----------cEEEEEEeCCEEEEEEcCCeEEEeecCCCCCcee
Q 046226          101 GNGFIYTGSD-SNVIRIWKQ-PEFTECGRLKAKTS-----------MVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus       101 ~~~~l~tg~~-dg~i~iwd~-~~~~~~~~~~~~~~-----------~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      .+..|++++. ++.|..+|. .+++.+.++.....           ....+++..+.+++++.|+.+..+|..+++.+..
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            4667777777 899999999 89998877653321           0123456677899999999999999998887766


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec------CCcEEEEEcCCCeeEEEccc
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL------DKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~  234 (434)
                      .........             ......++    +  .+..+++++.      ++.|..+|.++|+.+.++..
T Consensus       141 ~~~~~~~~~-------------~~~~~~P~----v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          141 VEVCDPKVG-------------STLTQAPF----V--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EECCCGGGT-------------CBCCSCCE----E--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ecCCCCCcc-------------ceeccCCE----E--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            543211000             00011111    1  1345565554      78999999999998887653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.88  E-value=1e-06  Score=74.34  Aligned_cols=200  Identities=12%  Similarity=0.018  Sum_probs=127.1

Q ss_pred             CeEEEEEecCCCEEEEEec--CCcEEEEEcCCCeeEEEcccCc-cCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcce
Q 046226          196 PITSIAINVSDDTLYSASL--DKTIKVWRIRDSKCIETIQAHS-EPINALVVADDGVLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      ....+.|++++.++++.+.  ++.|.++|+.+++.+..+.... .....+++..+..+++.-.++.+.++|..      .
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~------t   95 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRR------T   95 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETT------T
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECC------C
Confidence            3578999998644444432  5799999999999988875322 23345666643355566678999999986      2


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc-ccceEEEEeeCC-EEEEecCCCc
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASVAN-YVISGSADST  350 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~l~s~~~dg~  350 (434)
                      .+.+..+......  ...+++|++.++++..++.|.++|..+.+......-...+. ...+..+.+.+. .++....++.
T Consensus        96 ~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~  173 (266)
T 2iwa_A           96 LSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDC  173 (266)
T ss_dssp             TEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSE
T ss_pred             CcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCe
Confidence            2222333221111  23456688888887788999999987554333221111111 112445555444 4444556789


Q ss_pred             EEEEeccCCCceeeEEEeecc-------------ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          351 SRVWAREQDGRHTMLAVLVGH-------------RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      |.+.|..++   +.+..+.-.             ......++++|+.        ..+++++...+.|..-++....
T Consensus       174 V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~--------~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          174 IARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN--------KRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT--------TEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCC--------CEEEEECCCCCeEEEEEEeccc
Confidence            999999998   445544321             1245789999984        5678888889999999987654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.87  E-value=6e-06  Score=78.86  Aligned_cols=257  Identities=13%  Similarity=0.038  Sum_probs=144.6

Q ss_pred             EEEEeCCCeEEEecCCCceeEeeccCCCc----cEE-EEEEeCCEEEEEEc------CCeEEEeecCCCCCceeeEeeec
Q 046226          105 IYTGSDSNVIRIWKQPEFTECGRLKAKTS----MVV-AMEVSHDRVYAAYG------DGKIRVWRSTWDNGVKHVKLATI  173 (434)
Q Consensus       105 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~----~v~-~l~~~~~~l~~~s~------dg~i~vwd~~~~~~~~~~~~~~~  173 (434)
                      |++++.|+.|..+|..+++.+........    .+. .-.+..+.+++++.      +|.|+.+|..+++.+........
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~  203 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence            88888999999999999998876543220    111 11223567777663      79999999999888776653211


Q ss_pred             cC-----CCCceeEE-----Eec-----cccccCcCCCe-EEEEEecCCCEEEEEecC----------------CcEEEE
Q 046226          174 PK-----TGGAVRNL-----IVG-----KDKMMKHMGPI-TSIAINVSDDTLYSASLD----------------KTIKVW  221 (434)
Q Consensus       174 ~~-----~~~~~~~~-----~~~-----~~~~~~~~~~v-~~~~~~~~~~~l~s~~~d----------------g~i~vw  221 (434)
                      ..     ........     ...     ...+..-...+ ..+++.++..+++.+..+                +.|..+
T Consensus       204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al  283 (599)
T 1w6s_A          204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR  283 (599)
T ss_dssp             HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence            00     00000000     000     00000001111 245566777788877655                379999


Q ss_pred             EcCCCeeEEEcccCcc----------CeEEEEEc-CCC----eEEEEeCCCeEEEEecccccCcceeEEEEE--------
Q 046226          222 RIRDSKCIETIQAHSE----------PINALVVA-DDG----VLYSASDDATVRVWRRYFYSENQLHTLILT--------  278 (434)
Q Consensus       222 d~~~~~~~~~~~~~~~----------~v~~~~~~-~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------  278 (434)
                      |.++|+.+..++....          ++. +... .++    .++.++.+|.+.++|...  +.........        
T Consensus       284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t--G~~lw~~~~~~~~~~~~~  360 (599)
T 1w6s_A          284 DADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTD--GALVSANKLDDTVNVFKS  360 (599)
T ss_dssp             ETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTT--CCEEEEEESSTTCCSEEE
T ss_pred             eCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCC--CCEeecccccCCcccccc
Confidence            9999999887764321          121 2221 344    466688999999999762  2221111100        


Q ss_pred             ec-ccccC--------------------------eEEEEEecCCCEEEEEc-----------------------------
Q 046226          279 LT-AKYSP--------------------------VKTLTLTLDDGLLYGGC-----------------------------  302 (434)
Q Consensus       279 ~~-~~~~~--------------------------v~~~~~~~~~~~l~~~~-----------------------------  302 (434)
                      .. ....+                          -..++++|+..++++..                             
T Consensus       361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (599)
T 1w6s_A          361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (599)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence            00 00000                          12456677666555432                             


Q ss_pred             ----------CCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeec
Q 046226          303 ----------TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG  370 (434)
Q Consensus       303 ----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (434)
                                .+|.|..||+.+.+...+.........   -.+...+.+++.++.||.++.||.+++   +.+..++.
T Consensus       441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~---g~~~tagg~vf~gt~dg~l~A~D~~tG---~~lW~~~l  512 (599)
T 1w6s_A          441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWG---GTMATAGDLVFYGTLDGYLKARDSDTG---DLLWKFKI  512 (599)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCS---BCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEEC
T ss_pred             CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccC---cceEecCCEEEEECCCCeEEEEECCCC---CEEEEeeC
Confidence                      346777888776655444321111111   123445778888999999999999998   55555543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.87  E-value=2.8e-06  Score=76.49  Aligned_cols=188  Identities=10%  Similarity=-0.022  Sum_probs=116.4

Q ss_pred             eEEEEEecCCCEEEEEecC------CcEEEEEcCCCeeEEEcccCcc---CeEEEEEcCCC-eEEEEe------------
Q 046226          197 ITSIAINVSDDTLYSASLD------KTIKVWRIRDSKCIETIQAHSE---PINALVVADDG-VLYSAS------------  254 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~-~l~s~~------------  254 (434)
                      -..+.+.|+| .++++..+      |.|.++|.++++.+.++.....   .-..+.|+|++ .+++..            
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence            4566778999 66666555      7899999999999998874322   24468889998 666663            


Q ss_pred             -------CCCeEEEEecccccCcceeEEEEEecc--cccCeEEEEE--ecCCCEEEEEcC------CCeEEEEEcCcccc
Q 046226          255 -------DDATVRVWRRYFYSENQLHTLILTLTA--KYSPVKTLTL--TLDDGLLYGGCT------DGYIHYWHKGWFSA  317 (434)
Q Consensus       255 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~  317 (434)
                             .+.+|.+||+..      .+....+..  .......+.|  +|++++++++++      +++|.+|.......
T Consensus       219 ~~~~~~~~~d~V~v~D~~~------~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~  292 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRK------RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW  292 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTT------TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE
T ss_pred             hhhhhhccCCEEEEEECCC------CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce
Confidence                   378999999972      122333332  2233445555  999999888874      56887765432110


Q ss_pred             ccc---------ccCccc-------CcccceEE--EEeeCCEEEEec-CCCcEEEEeccCCCceeeEEEeeccc------
Q 046226          318 QLQ---------YGGALQ-------GHTHAVMC--LASVANYVISGS-ADSTSRVWAREQDGRHTMLAVLVGHR------  372 (434)
Q Consensus       318 ~~~---------~~~~~~-------~~~~~v~~--~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~------  372 (434)
                      ...         ....+.       +-......  ++.+|++|.++. ..+.|.+||+......+.+..+....      
T Consensus       293 ~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~  372 (462)
T 2ece_A          293 NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRAD  372 (462)
T ss_dssp             EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBC
T ss_pred             eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccc
Confidence            000         000000       00112333  455677766655 47899999997554445555554321      


Q ss_pred             --------cceeEEEEeecccCCCCCCcccEEEEee
Q 046226          373 --------GPIRCAIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       373 --------~~v~~~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                              +.-..++++|+         |++|+++.
T Consensus       373 ~~~G~~~~ggPr~~~lSpD---------Gk~LyVaN  399 (462)
T 2ece_A          373 HPAGHKLTGAPQMLEISRD---------GRRVYVTN  399 (462)
T ss_dssp             CTTSCCCCSCCCCEEECTT---------SSEEEEEC
T ss_pred             ccccccCCCCCCEEEEcCC---------CCEEEEEc
Confidence                    12577999999         88888777

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.85  E-value=2.2e-07  Score=86.67  Aligned_cols=240  Identities=11%  Similarity=0.022  Sum_probs=142.3

Q ss_pred             EEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE-e-cCCCEEEEEe-------
Q 046226          144 RVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI-N-VSDDTLYSAS-------  213 (434)
Q Consensus       144 ~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~s~~-------  213 (434)
                      ++++... ++.|.+.|+.+.+..+.+.+                     ........+++ . |+++++++++       
T Consensus       103 ~lfVnd~~~~rVavIdl~t~~~~~ii~i---------------------p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~  161 (595)
T 1fwx_A          103 FLFMNDKANTRVARVRCDVMKCDAILEI---------------------PNAKGIHGLRPQKWPRSNYVFCNGEDETPLV  161 (595)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC---------------------SSCCSEEEEEECCSSBCSEEEEEECSCEESS
T ss_pred             EEEEEcCCCCEEEEEECCCceEeeEEeC---------------------CCCCCCcceeeeecCCCcEEEEecccccccC
Confidence            5555444 67899999988766654432                     12344677787 4 8999998884       


Q ss_pred             -----------cCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCC---------------eEEEEec--
Q 046226          214 -----------LDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDA---------------TVRVWRR--  264 (434)
Q Consensus       214 -----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg---------------~i~iwd~--  264 (434)
                                 .++.+.++|.++.+.+.++.... ....+++++++ ++++.+.+.               .|.+.|+  
T Consensus       162 ~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~  240 (595)
T 1fwx_A          162 NDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  240 (595)
T ss_dssp             CSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             CCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence                       35689999999999888877433 45678899999 666665442               3444443  


Q ss_pred             ---------------------ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCccccc----
Q 046226          265 ---------------------YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQ----  318 (434)
Q Consensus       265 ---------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~----  318 (434)
                                           +......   ....+. -.....++.++|||+++++++ .+.+|.++|+.+....    
T Consensus       241 ~~~~v~~Gk~~~i~~V~VID~~~~~~~~---~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~  316 (595)
T 1fwx_A          241 IEKAIAAGDYQELNGVKVVDGRKEASSL---FTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN  316 (595)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGGGCCS---SEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred             eeEeccCCCeeEECcEEEEeCcccCCce---eEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc
Confidence                                 3100000   011111 112456789999999877765 5789999998744210    


Q ss_pred             c----cccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC-------CceeeEEEeeccccceeEEEEeeccc
Q 046226          319 L----QYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD-------GRHTMLAVLVGHRGPIRCAIAFLGRF  385 (434)
Q Consensus       319 ~----~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~  385 (434)
                      +    ......... .....++|+  |...++...|+.|.+||+...       +..+.+..+..|-.+-. ..++   .
T Consensus       317 l~~~~~v~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh-~~~~---~  391 (595)
T 1fwx_A          317 ADPRSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH-LKTV---M  391 (595)
T ss_dssp             CCGGGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE-EEET---T
T ss_pred             cCcccceEEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccc-ceec---c
Confidence            0    011111111 123555665  645566778999999999862       11256666666544321 1111   1


Q ss_pred             CCCCCCcccEEEEeec---CCeE----------EEEecCCCC
Q 046226          386 GEETEDEYCTICTGSL---DGVL----------KMWRVTRPK  414 (434)
Q Consensus       386 ~~~~~~~~~~l~s~~~---Dg~v----------~iw~~~~~~  414 (434)
                      +...+++|++|+++..   |..+          .++|+..++
T Consensus       392 g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          392 GETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             TTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             ceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            2223444898888753   4321          788886554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.84  E-value=2.2e-05  Score=78.40  Aligned_cols=293  Identities=11%  Similarity=0.047  Sum_probs=166.0

Q ss_pred             ccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeecc-------CCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCC
Q 046226           93 GQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLK-------AKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDN  163 (434)
Q Consensus        93 ~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~  163 (434)
                      ..|.++.. ....|..|+.+ -|.+||..+++......       .....|.++...++ .+.+|+..+-|.++|.....
T Consensus       211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~  289 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQ  289 (781)
T ss_dssp             SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC-
T ss_pred             CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCe
Confidence            46888888 34456666665 68889987655432211       12456899988776 88888885678888876543


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc---------c
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ---------A  234 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------~  234 (434)
                      .......        ....+........-....|.++...++|. |..|+.++-|..++..+........         .
T Consensus       290 ~~~~~~~--------~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l  360 (781)
T 3v9f_A          290 FLLPEQI--------RFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSL  360 (781)
T ss_dssp             ----------------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCC
T ss_pred             eeeeecc--------ccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCC
Confidence            2111100        00000000000001446789998887775 6667767779999987654322110         1


Q ss_pred             CccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226          235 HSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       235 ~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      ....|.++...+++.|..|+.++-|..||.....   ..............|.++...+++. |.+|+.++-|..||..+
T Consensus       361 ~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~  436 (781)
T 3v9f_A          361 SNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV---AIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRL  436 (781)
T ss_dssp             SSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE---EECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSS
T ss_pred             CCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe---EEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCC
Confidence            2356899999888878888877778888865110   0000000112335688888887766 55577767788888653


Q ss_pred             ccccccccCcccCcccceEEEEeeC-CEEEEecCCCcEEEEeccCCCceeeEEEee---ccccceeEEEEeecccCCCCC
Q 046226          315 FSAQLQYGGALQGHTHAVMCLASVA-NYVISGSADSTSRVWAREQDGRHTMLAVLV---GHRGPIRCAIAFLGRFGEETE  390 (434)
Q Consensus       315 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~  390 (434)
                      ......  .........|.++..+. ..|..|+. +-|..||..++.. .......   .....|.++...++       
T Consensus       437 ~~~~~~--~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~-------  505 (781)
T 3v9f_A          437 KKFQII--ELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSNSQLLENFVRSIAQDSE-------  505 (781)
T ss_dssp             CEEEEC--CSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTTSSCSCSCEEEEEECTT-------
T ss_pred             CcEEEe--ccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcccccccceeEEEEEcCC-------
Confidence            322111  11012345788888773 46666666 5688899876521 2221111   01356888877665       


Q ss_pred             CcccEEEEeecCCeEEEEecCCC
Q 046226          391 DEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       391 ~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                        |. |..|+.++-|..|+...+
T Consensus       506 --g~-lWigt~~~Gl~~~~~~~~  525 (781)
T 3v9f_A          506 --GR-FWIGTFGGGVGIYTPDMQ  525 (781)
T ss_dssp             --CC-EEEEESSSCEEEECTTCC
T ss_pred             --CC-EEEEEcCCCEEEEeCCCC
Confidence              55 444555444666776544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.83  E-value=4.7e-06  Score=68.91  Aligned_cols=195  Identities=11%  Similarity=0.077  Sum_probs=127.1

Q ss_pred             cceeeeEEEeeccc--cEEEEEEcCCEE-EEEeCC--CeEEEecCCCceeEeeccCCCc-cEEEEEEeCCEEEEEEc-CC
Q 046226           80 SSYRCISSVLKKDG--QILCIAVGNGFI-YTGSDS--NVIRIWKQPEFTECGRLKAKTS-MVVAMEVSHDRVYAAYG-DG  152 (434)
Q Consensus        80 ~~~~~~~~~~~h~~--~v~~~~~~~~~l-~tg~~d--g~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~l~~~s~-dg  152 (434)
                      -.++.+.++ .|+.  -.-.+.|+++.| .+.+.+  ..|+++|+++++.+..+..... .-..+++..+.|+.... ++
T Consensus         7 ~~~~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~   85 (243)
T 3mbr_X            7 QGYRVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNH   85 (243)
T ss_dssp             CCEEEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSS
T ss_pred             cceEEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCC
Confidence            346667776 6654  466899944544 444554  4999999999999888764433 23556777887776665 89


Q ss_pred             eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc
Q 046226          153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI  232 (434)
Q Consensus       153 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  232 (434)
                      .+.+||..+.+.+..+..                       ...=..+  .+++..|+.+..++.|.++|.++.+.+.++
T Consensus        86 ~v~v~D~~tl~~~~ti~~-----------------------~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I  140 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRY-----------------------PGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSI  140 (243)
T ss_dssp             EEEEEETTTTEEEEEEEC-----------------------SSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             EEEEEECCcCcEEEEEeC-----------------------CCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence            999999988777766642                       1111333  356777777777899999999999888877


Q ss_pred             ccCc-----cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE-e--------cccccCeEEEEEecCCCE
Q 046226          233 QAHS-----EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT-L--------TAKYSPVKTLTLTLDDGL  297 (434)
Q Consensus       233 ~~~~-----~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~--------~~~~~~v~~~~~~~~~~~  297 (434)
                      ....     ..++.+.+. ++ .++..-.+..|.+.|...  +.-....... +        .....-.+.|+++|+++.
T Consensus       141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t--G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~  217 (243)
T 3mbr_X          141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS--GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR  217 (243)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT--CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred             EEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC--CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence            6432     345667776 56 444444678899998872  1111111111 0        012235689999998776


Q ss_pred             EEEEcC
Q 046226          298 LYGGCT  303 (434)
Q Consensus       298 l~~~~~  303 (434)
                      |++.+.
T Consensus       218 lfVTGK  223 (243)
T 3mbr_X          218 LFVTGK  223 (243)
T ss_dssp             EEEEET
T ss_pred             EEEECC
Confidence            666553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.81  E-value=4.4e-07  Score=81.10  Aligned_cols=255  Identities=7%  Similarity=-0.051  Sum_probs=153.7

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEEEEEe----------CCCeEEEecCCCceeEeeccCC-------CccEEEEE
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGS----------DSNVIRIWKQPEFTECGRLKAK-------TSMVVAME  139 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~  139 (434)
                      ..+++.+.++..-..+  .+.+  ++++++++.          .++.|.+||..+++.+.++..+       ......++
T Consensus        53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia  130 (368)
T 1mda_H           53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG  130 (368)
T ss_dssp             TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred             CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence            3456777777655556  6777  888888886          3789999999999999988643       12346788


Q ss_pred             EeCC--EEEEEEc--CCeEEE--eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEE
Q 046226          140 VSHD--RVYAAYG--DGKIRV--WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSA  212 (434)
Q Consensus       140 ~~~~--~l~~~s~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~  212 (434)
                      ++||  +++++..  +..+.+  +|..+   +..+..                     +..     +.+.|++ ..+++.
T Consensus       131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v---------------------~~~-----~~~~p~g~~~~~~~  181 (368)
T 1mda_H          131 NCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS---------------------ASC-----FHIHPGAAATHYLG  181 (368)
T ss_dssp             ECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC---------------------SSC-----CCCEEEETTEEECC
T ss_pred             EcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC---------------------CCc-----eEEccCCCeEEEEE
Confidence            9998  6777764  467888  99865   222211                     010     1123443 344556


Q ss_pred             ecCCcEEEEEcCC-----CeeEE----EcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecc--
Q 046226          213 SLDKTIKVWRIRD-----SKCIE----TIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTA--  281 (434)
Q Consensus       213 ~~dg~i~vwd~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--  281 (434)
                      +.||.+.+.|+++     ++...    .+.....+.   ....++.++..+. +.|.+.|+...    .......+..  
T Consensus       182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~----~~~v~~~~~~~~  253 (368)
T 1mda_H          182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAA----GATMKAAIDGNE  253 (368)
T ss_dssp             CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSS----CCEEECCCCSSC
T ss_pred             cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCC----cceEEEEEEecc
Confidence            6788888888876     44331    111222333   3333345555556 89999987511    1111111110  


Q ss_pred             --------cccCeEEEEEecCCCEEEEEcC---------CCeEEEEEcCcccccccccCcccCcccceEEEEe--eCC-E
Q 046226          282 --------KYSPVKTLTLTLDDGLLYGGCT---------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VAN-Y  341 (434)
Q Consensus       282 --------~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~  341 (434)
                              .......++++++++.++++..         ++.+.++|+.+.+....    +.... ...++.+  +++ .
T Consensus       254 ~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~----i~vg~-~p~gi~~s~Dg~~l  328 (368)
T 1mda_H          254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----ISNGH-DSDAIIAAQDGASD  328 (368)
T ss_dssp             THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC----CEEEE-EECEEEECCSSSCE
T ss_pred             ccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE----EECCC-CcceEEECCCCCEE
Confidence                    0111222689999998887643         23567999876543322    22221 3555665  465 5


Q ss_pred             EEEec-CCCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226          342 VISGS-ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       342 l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  381 (434)
                      +++.. .++.|.++|+.+.   +.+..+.....+ ..+++.
T Consensus       329 ~va~~~~~~~VsVID~~t~---kvv~~I~vg~~P-~~i~~~  365 (368)
T 1mda_H          329 NYANSAGTEVLDIYDAASD---QDQSSVELDKGP-ESLSVQ  365 (368)
T ss_dssp             EEEEETTTTEEEEEESSSC---EEEEECCCCSCC-CEEECC
T ss_pred             EEEccCCCCeEEEEECCCC---cEEEEEECCCCC-CEEEee
Confidence            66666 5999999999998   777777654433 455554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.80  E-value=4.7e-07  Score=80.88  Aligned_cols=214  Identities=10%  Similarity=0.040  Sum_probs=123.3

Q ss_pred             ccccEEEEEE--cCCEEEEEeC-----CCeEEEecCCCceeEeeccC------CCccEEEEEEeCC--EEEEE-E---cC
Q 046226           91 KDGQILCIAV--GNGFIYTGSD-----SNVIRIWKQPEFTECGRLKA------KTSMVVAMEVSHD--RVYAA-Y---GD  151 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~~--~l~~~-s---~d  151 (434)
                      |-..+.++++  +++++++-..     ++.|.+||+.+++.+..+..      +...+..++++++  .++.+ .   .+
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~  144 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK  144 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence            5567999999  4555554433     57899999998887666543      2245688999963  55444 3   57


Q ss_pred             CeEEEeecCCCCCceeeEee--eccCCCCcee---EEE--eccccccCcCCCeEEEEEecCCCEEEEEecCC-cEEEEEc
Q 046226          152 GKIRVWRSTWDNGVKHVKLA--TIPKTGGAVR---NLI--VGKDKMMKHMGPITSIAINVSDDTLYSASLDK-TIKVWRI  223 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~---~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~  223 (434)
                      +.|.+||+.+++........  ..+.......   .+.  ............+..|+|+|+++.|+.+..++ .|..++.
T Consensus       145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred             CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence            89999998766543322100  0000000000   000  00000000113468899999999998887666 4555543


Q ss_pred             C---CCe-----eEE--EcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEe
Q 046226          224 R---DSK-----CIE--TIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT  292 (434)
Q Consensus       224 ~---~~~-----~~~--~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  292 (434)
                      .   .+.     ...  ...++......+++.+++ ++++...++.|.+||...  +  ....+.. ......+..+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~--G--~~~~~~~-~~~~~~p~~va~~  299 (343)
T 2qe8_A          225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD--R--AYKLLVT-DEKLSWTDSFNFG  299 (343)
T ss_dssp             HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT--T--EEEEEEE-CGGGSCEEEEEEC
T ss_pred             HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC--C--CEEEEEE-CCceecCCeeEEC
Confidence            2   110     000  111233456679999999 777777889999999721  1  1122221 1234568899999


Q ss_pred             cCCCEEEEEcCCCeEEE
Q 046226          293 LDDGLLYGGCTDGYIHY  309 (434)
Q Consensus       293 ~~~~~l~~~~~dg~i~i  309 (434)
                      +++.++++....+.+.+
T Consensus       300 ~~g~l~v~~~~~~~~~~  316 (343)
T 2qe8_A          300 SDGYLYFDCNQLHHSAP  316 (343)
T ss_dssp             TTSCEEEEECCGGGSGG
T ss_pred             CCCcEEEEeCccccccc
Confidence            98887777765544433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.80  E-value=2.3e-06  Score=81.70  Aligned_cols=194  Identities=12%  Similarity=0.055  Sum_probs=116.0

Q ss_pred             cCCEEEEEeC-CCeEEEecC-CCceeEeeccCCCcc-----------EEEEEE--eCCE----EEEEEcCCeEEEeecCC
Q 046226          101 GNGFIYTGSD-SNVIRIWKQ-PEFTECGRLKAKTSM-----------VVAMEV--SHDR----VYAAYGDGKIRVWRSTW  161 (434)
Q Consensus       101 ~~~~l~tg~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------v~~l~~--~~~~----l~~~s~dg~i~vwd~~~  161 (434)
                      .+..|++++. ++.|.-+|. .+++.+.++......           ...+++  ..+.    +++++.|+.|..+|..+
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence            4667777777 899999999 899988776543210           123455  3445    99999999999999998


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe------cCCcEEEEEcCCCeeEEEcccC
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS------LDKTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~  235 (434)
                      ++.+.......... +            ..-...++    + .+ ..+++++      .+|.|+.+|.++|+.+.++...
T Consensus       141 G~~~W~~~~~~~~~-~------------~~~~ssP~----v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          141 GETVWKVENSDIKV-G------------STLTIAPY----V-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             CCEEEEEECCCGGG-T------------CBCCSCCE----E-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CCEEEeecCCCCCc-c------------ceeecCCE----E-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            88776654321100 0            00011111    1 13 3555554      3799999999999998877542


Q ss_pred             ccC-------------------------------------e-EEEEEcCCC-eEEEEeCC----------------CeEE
Q 046226          236 SEP-------------------------------------I-NALVVADDG-VLYSASDD----------------ATVR  260 (434)
Q Consensus       236 ~~~-------------------------------------v-~~~~~~~~~-~l~s~~~d----------------g~i~  260 (434)
                      ...                                     + ..+++.++. +++.+..+                +.|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            211                                     0 123454444 66666654                3788


Q ss_pred             EEecccccCcceeEEEEEecccc--------cCeEEEEEe-cCC---CEEEEEcCCCeEEEEEcCccccc
Q 046226          261 VWRRYFYSENQLHTLILTLTAKY--------SPVKTLTLT-LDD---GLLYGGCTDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~  318 (434)
                      .+|..  ++.....  .....|.        .++. +... .+|   ..++.++.+|.++++|..+.+..
T Consensus       282 Ald~~--TG~~~W~--~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          282 GRDAD--TGEAKFG--YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             EEETT--TCCEEEE--EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEeCC--CCceeeE--eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence            88876  2222222  2222221        1221 2222 456   46777889999999998765543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.78  E-value=7.9e-06  Score=78.10  Aligned_cols=276  Identities=12%  Similarity=0.042  Sum_probs=152.7

Q ss_pred             EEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCc----cEE-EEEEeCC------EEEEEEc------CCeEEEeecCC
Q 046226           99 AVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS----MVV-AMEVSHD------RVYAAYG------DGKIRVWRSTW  161 (434)
Q Consensus        99 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~----~v~-~l~~~~~------~l~~~s~------dg~i~vwd~~~  161 (434)
                      ++.+..|+.++.|+.|..+|..+++.+........    .+. .-....+      .+++++.      ++.|..+|..+
T Consensus       114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t  193 (582)
T 1flg_A          114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT  193 (582)
T ss_dssp             EEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred             EEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence            34577888899999999999999998876543321    111 1112233      5666553      78999999998


Q ss_pred             CCCceeeEeeecc--CCCCceeEEE--ecccc-------------c--cCcCCCeEEEEEecCCCEEEEEec--------
Q 046226          162 DNGVKHVKLATIP--KTGGAVRNLI--VGKDK-------------M--MKHMGPITSIAINVSDDTLYSASL--------  214 (434)
Q Consensus       162 ~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~-------------~--~~~~~~v~~~~~~~~~~~l~s~~~--------  214 (434)
                      ++.+.........  ..........  .+...             .  .+....-..+++.|+..+++.+..        
T Consensus       194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~  273 (582)
T 1flg_A          194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW  273 (582)
T ss_dssp             CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred             CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence            8877654321000  0000000000  00000             0  001111134677787788877663        


Q ss_pred             ------------C----CcEEEEEcCCCeeEEEccc--Cc--------cCeEEEEEc-CCC----eEEEEeCCCeEEEEe
Q 046226          215 ------------D----KTIKVWRIRDSKCIETIQA--HS--------EPINALVVA-DDG----VLYSASDDATVRVWR  263 (434)
Q Consensus       215 ------------d----g~i~vwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~----~l~s~~~dg~i~iwd  263 (434)
                                  |    +.|..+|..+|+.+..++.  |.        .++. +... .++    .++.++.+|.++++|
T Consensus       274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD  352 (582)
T 1flg_A          274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVD  352 (582)
T ss_dssp             GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred             ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEE
Confidence                        2    5899999999999888753  21        1221 1221 344    577889999999999


Q ss_pred             cccccCcceeEEEEE--------e-------------------------------ccccc--CeEEEEEecCCCEEEEEc
Q 046226          264 RYFYSENQLHTLILT--------L-------------------------------TAKYS--PVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       264 ~~~~~~~~~~~~~~~--------~-------------------------------~~~~~--~v~~~~~~~~~~~l~~~~  302 (434)
                      ...  +.........        .                               ....+  .-..++++|+..++++..
T Consensus       353 ~~t--G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~  430 (582)
T 1flg_A          353 RSN--GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPA  430 (582)
T ss_dssp             TTT--CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEE
T ss_pred             CCC--CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEec
Confidence            762  1111111000        0                               00000  011346666655555432


Q ss_pred             ---------------------------------CCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCC
Q 046226          303 ---------------------------------TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADS  349 (434)
Q Consensus       303 ---------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg  349 (434)
                                                       .+|.|..||+.+.+...+.........   ..+...+.+++.|+.||
T Consensus       431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~---g~~~tagglvf~g~~dg  507 (582)
T 1flg_A          431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA---GVLATAGNLVFTGTGDG  507 (582)
T ss_dssp             ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS---CCEEETTTEEEEECTTS
T ss_pred             hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc---cceEeCCCEEEEECCCC
Confidence                                             257888888877665554322111111   12334577888899999


Q ss_pred             cEEEEeccCCCceeeEEEeecccccee-EEEEeec
Q 046226          350 TSRVWAREQDGRHTMLAVLVGHRGPIR-CAIAFLG  383 (434)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~~~~  383 (434)
                      .++.||.+++   +.+..++...+.+. -+.+..+
T Consensus       508 ~l~A~D~~tG---~~lW~~~~~~g~~a~P~~y~~~  539 (582)
T 1flg_A          508 YFKAFDAKSG---KELWKFQTGSGIVSPPITWEQD  539 (582)
T ss_dssp             EEEEEETTTC---CEEEEEECSSCCCSCCEEEEET
T ss_pred             cEEEEECCCC---CEEEEecCCCCcccCceEEEEC
Confidence            9999999998   56666654333221 2555555

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=3.9e-05  Score=76.55  Aligned_cols=287  Identities=9%  Similarity=0.008  Sum_probs=166.4

Q ss_pred             cccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeec--------------cCCCccEEEEEEeCC-EEEEEEcCCeEE
Q 046226           92 DGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRL--------------KAKTSMVVAMEVSHD-RVYAAYGDGKIR  155 (434)
Q Consensus        92 ~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~--------------~~~~~~v~~l~~~~~-~l~~~s~dg~i~  155 (434)
                      ...|.++.. ....|..|+..+-|.++|..+.......              ......|.++....+ .|.+|+.++-|.
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~  336 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGIN  336 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEE
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEE
Confidence            356888888 5667788887567888887765432211              113457899988876 788899888888


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc---
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI---  232 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---  232 (434)
                      .++...... ..+........            ...-....|.++...+++. |..|+.++-|..||..+++...-.   
T Consensus       337 ~~~~~~~~~-~~~~~~~~~~~------------~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~  402 (781)
T 3v9f_A          337 FISNAPPTF-HTWSYSPTQMN------------ESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENR  402 (781)
T ss_dssp             EECSSCCSC-EEEC----CCC------------SSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC----
T ss_pred             EeCCCCCcc-eeeccCccccc------------cCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCC
Confidence            888654322 11110000000            0001345688988877665 556676667999998654432111   


Q ss_pred             ccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEe--cccccCeEEEEEecCCCEEEEEcCCCeEEEE
Q 046226          233 QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTL--TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW  310 (434)
Q Consensus       233 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  310 (434)
                      ......|.++...+++.|..|+.++-|..+|..      ........  ......|.++...+++. |..|+. +-|..|
T Consensus       403 ~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~------~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~  474 (781)
T 3v9f_A          403 ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTR------LKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVI  474 (781)
T ss_dssp             -CCCSBEEEEEECTTSCEEEEETTEEEEEECSS------SCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEE
T ss_pred             CCCCcceEEEEECCCCCEEEEeccCCEEEEcCC------CCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEE
Confidence            123467899998888877778877778888764      11111111  12345788888887766 555555 558888


Q ss_pred             EcCcccccccccCc-ccCcccceEEEEeeC-CEEEEecCCCcEEEEeccCCCceeeEEEeec----cccceeEEEEeecc
Q 046226          311 HKGWFSAQLQYGGA-LQGHTHAVMCLASVA-NYVISGSADSTSRVWAREQDGRHTMLAVLVG----HRGPIRCAIAFLGR  384 (434)
Q Consensus       311 d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~  384 (434)
                      |............. .......|.++..+. ..|..|+.++-|..||..++   . +..+..    ....|.++...++ 
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~---~-~~~~~~~~~l~~~~i~~i~~d~~-  549 (781)
T 3v9f_A          475 DLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ---L-VRKFNQYEGFCSNTINQIYRSSK-  549 (781)
T ss_dssp             ESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC---E-EEEECTTTTCSCSCEEEEEECTT-
T ss_pred             eCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC---e-EEEccCCCCCCCCeeEEEEECCC-
Confidence            87543221111000 011135688887763 35566666455777887654   2 222221    1346777777665 


Q ss_pred             cCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          385 FGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       385 ~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                              |.+.+ |+.+|.|..||..+++
T Consensus       550 --------g~lWi-~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          550 --------GQMWL-ATGEGLVCFPSARNFD  570 (781)
T ss_dssp             --------SCEEE-EETTEEEEESCTTTCC
T ss_pred             --------CCEEE-EECCCceEEECCCCCc
Confidence                    55444 4446665888876554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.74  E-value=3.7e-06  Score=70.11  Aligned_cols=175  Identities=10%  Similarity=-0.010  Sum_probs=107.9

Q ss_pred             eEEEEEecCCCEEEEEecCC--cEEEEEcCCCeeEEEcccCccC-eEEEEEcCCCeEEEEeCCCeEEEEecccccCccee
Q 046226          197 ITSIAINVSDDTLYSASLDK--TIKVWRIRDSKCIETIQAHSEP-INALVVADDGVLYSASDDATVRVWRRYFYSENQLH  273 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  273 (434)
                      ...+.|+ ++.++.+.+.+|  .|+++|+++++.+..+...... -..++...+..++..-.++.+.+||..      ..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~------t~  117 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR------NL  117 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT------TC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc------cC
Confidence            4788888 666666777666  8999999999998888654332 234555544355555578999999987      22


Q ss_pred             EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc-cceEEEEee-CCEEEEecCCCcE
Q 046226          274 TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT-HAVMCLASV-ANYVISGSADSTS  351 (434)
Q Consensus       274 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~l~s~~~dg~i  351 (434)
                      +.+..+....   ....+.++++.|+.+..++.|.++|..+.+......-...+.. ..+..+.+. |...+..-.+..|
T Consensus       118 ~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I  194 (262)
T 3nol_A          118 RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKI  194 (262)
T ss_dssp             CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred             cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeE
Confidence            2233332211   2233446778888877788999999876544333211111111 223345554 4444445468899


Q ss_pred             EEEeccCCCceeeEEEeecc------------ccceeEEEEeecc
Q 046226          352 RVWAREQDGRHTMLAVLVGH------------RGPIRCAIAFLGR  384 (434)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~h------------~~~v~~~~~~~~~  384 (434)
                      .+.|..++   +.+..+...            ....+.++++|+.
T Consensus       195 ~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~  236 (262)
T 3nol_A          195 VRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH  236 (262)
T ss_dssp             EEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred             EEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence            99999998   444444321            1345789999983

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.73  E-value=1.4e-05  Score=76.41  Aligned_cols=118  Identities=11%  Similarity=0.001  Sum_probs=73.5

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCcc---------EEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSM---------VVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~---------v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      .+..|++++.++.|..+|..+++.+.++......         ...+++..+.+++++.|+.|..+|..+++.+......
T Consensus        67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            4556666666445999999999988776543221         1234556778999999999999999998887666432


Q ss_pred             eccCCCCceeEEEeccccccCcCCCeEEEEEe-cCCC-EEEEEec------CCcEEEEEcCCCeeEEEcc
Q 046226          172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN-VSDD-TLYSASL------DKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-~l~s~~~------dg~i~vwd~~~~~~~~~~~  233 (434)
                      .....             ......++.  .=. .+++ .+++++.      +|.|+.+|.++|+.+....
T Consensus       147 ~~~~~-------------~~~~~sP~v--~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          147 DHGAG-------------YTMTGAPTI--VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             CGGGT-------------CBCCSCCEE--EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             CCCcC-------------cccccCCEE--eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence            11000             000111211  100 1123 5666543      7899999999999887654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.72  E-value=1.2e-06  Score=81.65  Aligned_cols=249  Identities=9%  Similarity=0.008  Sum_probs=149.6

Q ss_pred             EEEEE-----cCCEEEEEeC-CCeEEEecCCCceeEeeccCC-CccEEEEEE-e-CC--EEEEEE---------------
Q 046226           96 LCIAV-----GNGFIYTGSD-SNVIRIWKQPEFTECGRLKAK-TSMVVAMEV-S-HD--RVYAAY---------------  149 (434)
Q Consensus        96 ~~~~~-----~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~-~-~~--~l~~~s---------------  149 (434)
                      ..+++     ||++|+.... ++.|.+.|+.+.+....+.-. ......+++ . |+  ++++++               
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence            45666     7788877765 457999999999987744321 245788887 3 65  777774               


Q ss_pred             ---cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC-----------
Q 046226          150 ---GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD-----------  215 (434)
Q Consensus       150 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------  215 (434)
                         .++.+.+.|..+.+....+.+..                       ....++++|+|+++++.+.+           
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-----------------------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~  226 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQVLVSG-----------------------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMT  226 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEEEESS-----------------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHT
T ss_pred             ccccCceEEEEECCCCeEEEEEEeCC-----------------------CccceEECCCCCEEEEEecCcccCcchhhcc
Confidence               24678888888765555554311                       22334455666665555533           


Q ss_pred             ---------------------------CcEEEEEcCC--Cee-EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEe
Q 046226          216 ---------------------------KTIKVWRIRD--SKC-IETIQAHSEPINALVVADDG--VLYSASDDATVRVWR  263 (434)
Q Consensus       216 ---------------------------g~i~vwd~~~--~~~-~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd  263 (434)
                                                 +.|.+.|..+  ++. +..+.. .....++.++|||  .++++..+..|.++|
T Consensus       227 ~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid  305 (595)
T 1fwx_A          227 AAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLD  305 (595)
T ss_dssp             CCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred             ccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence                                       2477888876  444 444443 2355789999999  555566789999999


Q ss_pred             cccccC------cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc------ccccccCcccCcccc
Q 046226          264 RYFYSE------NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS------AQLQYGGALQGHTHA  331 (434)
Q Consensus       264 ~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~  331 (434)
                      +.....      .......... .-......++|+++|...++...|+.|.+||+....      ........+..|..+
T Consensus       306 ~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          306 VTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             GGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             CcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence            873210      0011122222 233467899999999444556779999999986521      112222233333222


Q ss_pred             e-EE------EEeeCCEEEEecC---CCcE----------EEEeccCCCceeeEEEeec
Q 046226          332 V-MC------LASVANYVISGSA---DSTS----------RVWAREQDGRHTMLAVLVG  370 (434)
Q Consensus       332 v-~~------~~~~~~~l~s~~~---dg~i----------~iwd~~~~~~~~~~~~~~~  370 (434)
                      - .+      +..+|++|++...   |+.+          .++|+.. ++.+++.....
T Consensus       385 Gh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~-~~m~lv~d~p~  442 (595)
T 1fwx_A          385 GHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG-DKMVLVHDGPT  442 (595)
T ss_dssp             EEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS-SSCEEEEEEEE
T ss_pred             ccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC-CcEEEEEEEcC
Confidence            1 11      1346888887653   4432          8899954 44566655444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.68  E-value=3.3e-05  Score=68.09  Aligned_cols=239  Identities=6%  Similarity=-0.038  Sum_probs=136.6

Q ss_pred             EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeec-cC------------------CCccEEEEEEeC-C-EEEEEEcC
Q 046226           95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRL-KA------------------KTSMVVAMEVSH-D-RVYAAYGD  151 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~------------------~~~~v~~l~~~~-~-~l~~~s~d  151 (434)
                      ..++++  ++++++++..++.|..|+..+++..... ..                  .......+++.+ + .|+++...
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            455677  6677888888999999998765432111 00                  013578899996 4 78888776


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEec----------------
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASL----------------  214 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~----------------  214 (434)
                      +.|..+|...+. +..+.  ....               .........+++.+ +|++.++-..                
T Consensus       101 ~~i~~~d~~~g~-~~~~~--~~~~---------------~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~  162 (322)
T 2fp8_A          101 YHLSVVGSEGGH-ATQLA--TSVD---------------GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD  162 (322)
T ss_dssp             TEEEEECTTCEE-CEEEE--SEET---------------TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred             CCEEEEeCCCCE-EEEec--ccCC---------------CCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence            668888765322 11110  0000               01123467899999 8876665432                


Q ss_pred             -CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEE-eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEE
Q 046226          215 -DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSA-SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTL  291 (434)
Q Consensus       215 -dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  291 (434)
                       ++.|..||..+++...... .......|++++++ .|+.+ ..++.|.+|++...... ........   .+ ...+++
T Consensus       163 ~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-~~~~~~~~---~g-P~gi~~  236 (322)
T 2fp8_A          163 KTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEVLVKI---PN-PGNIKR  236 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-CEEEEEEC---SS-EEEEEE
T ss_pred             CCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-ccceEEeC---CC-CCCeEE
Confidence             3678999987776432222 22345679999998 45544 56689999997621111 11121121   22 778999


Q ss_pred             ecCCCEEEEEcC----------CCeEEEEEcCcccccccccCcccCc-ccceEEEEeeCC-EEEEecCCCcEEEEeccCC
Q 046226          292 TLDDGLLYGGCT----------DGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASVAN-YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       292 ~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~  359 (434)
                      +++|++.++...          .+.|..+|... .....+ ....+. ...+.++.+.+. ++++...++.|..+++...
T Consensus       237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G-~~~~~~-~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG-NILEVI-PLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             CTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS-CEEEEE-ECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC---
T ss_pred             CCCCCEEEEecCcccccccCCCccEEEEECCCC-CEEEEE-ECCCCCccccceEEEEeCCEEEEeecCCCceEEEecccc
Confidence            999986666544          46677887532 111111 111111 123445555544 4455556788999987643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.64  E-value=0.00021  Score=63.08  Aligned_cols=285  Identities=9%  Similarity=-0.033  Sum_probs=148.4

Q ss_pred             cceeeeEEEeeccccEEEEEE-c-CCEEEEEeCCCeEEEecCCCc---eeEee-ccCCCccEEEEEEeCCEEEEEEcCCe
Q 046226           80 SSYRCISSVLKKDGQILCIAV-G-NGFIYTGSDSNVIRIWKQPEF---TECGR-LKAKTSMVVAMEVSHDRVYAAYGDGK  153 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~-~-~~~l~tg~~dg~i~iwd~~~~---~~~~~-~~~~~~~v~~l~~~~~~l~~~s~dg~  153 (434)
                      .+|+.+..  .-...+.++.| + +..++ ++.+|.|... ...+   +.+.. .......+.+|.+.++.+++++.++.
T Consensus        25 ~~W~~~~~--~~~~~~~~v~~~~~~~~~~-~G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~  100 (327)
T 2xbg_A           25 NPWEAIQL--PTTATILDMSFIDRHHGWL-VGVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPI  100 (327)
T ss_dssp             CCEEEEEC--SCSSCEEEEEESSSSCEEE-EETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTE
T ss_pred             CCceEeec--CCCCcEEEEEECCCCcEEE-EcCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCe
Confidence            35655542  33457999999 4 44555 5567766433 2223   33221 11234578999999887666777775


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc-
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI-  232 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-  232 (434)
                      |.. ..+.++.-.....   .                ..+...+..+.+.+++..++++ .+|.|..- .+.++.-... 
T Consensus       101 i~~-S~DgG~tW~~~~~---~----------------~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~  158 (327)
T 2xbg_A          101 MLH-TTDGGQSWSQIPL---D----------------PKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALV  158 (327)
T ss_dssp             EEE-ESSTTSSCEECCC---C----------------TTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEE
T ss_pred             EEE-ECCCCCCceECcc---c----------------cCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEee
Confidence            543 2222222221110   0                0123446777777766655555 46654332 2223322222 


Q ss_pred             ccCccCeEEEEEcCCCeEEEEeCCCeEEE-EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE
Q 046226          233 QAHSEPINALVVADDGVLYSASDDATVRV-WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH  311 (434)
Q Consensus       233 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  311 (434)
                      ......+..+.+.+++.++..+.+|.+.. +|-    .........  ......+..+.+.+++..++ ++.+|.+++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~----gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~  231 (327)
T 2xbg_A          159 QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP----GQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSD  231 (327)
T ss_dssp             CSCCCCEEEEEECTTSCEEEEETTSSEEEEECT----TCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEE
T ss_pred             cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC----CCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEec
Confidence            23455788999998884445555555443 331    012233222  23445788899988887654 45678877764


Q ss_pred             cCcccccccccCcc-cCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCC
Q 046226          312 KGWFSAQLQYGGAL-QGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       312 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  388 (434)
                      .+.. ......... ..+...+.++.+.  +..+++ +.+|.| ++..+.+..+..+.........+.++.+.++     
T Consensus       232 ~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~-----  303 (327)
T 2xbg_A          232 PDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP-----  303 (327)
T ss_dssp             TTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET-----
T ss_pred             CCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC-----
Confidence            2211 111111110 0122346777775  344444 447766 4455555444433222123456788888754     


Q ss_pred             CCCcccEEEEeecCCeEEEEec
Q 046226          389 TEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       389 ~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                          + .++.++.+|.|.-++-
T Consensus       304 ----~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          304 ----D-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             ----T-EEEEECSTTEEEEECC
T ss_pred             ----C-ceEEEcCCceEEEEcC
Confidence                3 4667778998776653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.63  E-value=1.1e-05  Score=67.27  Aligned_cols=183  Identities=10%  Similarity=0.006  Sum_probs=113.9

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc-CeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeE
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE-PINALVVADDGVLYSASDDATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  274 (434)
                      -...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ .... .-..+++..+.+++..-.++.+.+||..      ..+
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~------Tl~  127 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGM------PPQ  127 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETT------TTE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECC------cCc
Confidence            34788887 4566667778889999999999988877 3322 2234666655455566678999999987      222


Q ss_pred             EEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc-ccceEEEEee-CCEEEEecCCCcEE
Q 046226          275 LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASV-ANYVISGSADSTSR  352 (434)
Q Consensus       275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~l~s~~~dg~i~  352 (434)
                      .+..+... ..-..+  .++++.|+.+..++.|.++|..+.+......-...+. ...+..+.+. |...+..-.+..|.
T Consensus       128 ~~~ti~~~-~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~  204 (268)
T 3nok_A          128 RERTTRYS-GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVL  204 (268)
T ss_dssp             EEEEEECS-SCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEE
T ss_pred             EEEEEeCC-CceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEE
Confidence            33333221 112233  3567888888889999999987654433321111111 1133556664 54444444678999


Q ss_pred             EEeccCCCceeeEEEeecc-------------ccceeEEEEeecccCCCCCCcccEEEEee
Q 046226          353 VWAREQDGRHTMLAVLVGH-------------RGPIRCAIAFLGRFGEETEDEYCTICTGS  400 (434)
Q Consensus       353 iwd~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~  400 (434)
                      +.|..++   +.+..+...             ..-.+.|++.|+.        ..+++||-
T Consensus       205 vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~--------~rlfVTGK  254 (268)
T 3nok_A          205 EIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS--------GRIFMTGK  254 (268)
T ss_dssp             EECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT--------CCEEEEET
T ss_pred             EEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCC--------CEEEEeCC
Confidence            9999998   444444321             1356789999974        56666664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.62  E-value=3.7e-05  Score=63.57  Aligned_cols=186  Identities=10%  Similarity=-0.052  Sum_probs=113.7

Q ss_pred             CCeEEEEEecCCCEEEEEecC--CcEEEEEcCCCeeEEEcccCccC-eEEEEEcCCCeEEEEeCCCeEEEEecccccCcc
Q 046226          195 GPITSIAINVSDDTLYSASLD--KTIKVWRIRDSKCIETIQAHSEP-INALVVADDGVLYSASDDATVRVWRRYFYSENQ  271 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  271 (434)
                      .-...+.|+. +.++.+.+.+  +.|+++|+.+++.+..+...... -..+++..+..+...-.++.+.+||..      
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~------   93 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA------   93 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT------
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC------
Confidence            4466889985 5555555554  48999999999998887644332 234555544355556678999999986      


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc-cceEEEEeeC-CEEEEecCCC
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT-HAVMCLASVA-NYVISGSADS  349 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~l~s~~~dg  349 (434)
                      ..+.+..+..... -..+  .+++..|+.+..++.|.++|..+........-...+.. ..+..+.+.+ ..++..-.+.
T Consensus        94 tl~~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~  170 (243)
T 3mbr_X           94 TLTPRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTS  170 (243)
T ss_dssp             TTEEEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTT
T ss_pred             cCcEEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCC
Confidence            2223333332222 2233  45677777777899999999876544333211111111 2344566654 4444444678


Q ss_pred             cEEEEeccCCCceeeEEEeecc-------------ccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226          350 TSRVWAREQDGRHTMLAVLVGH-------------RGPIRCAIAFLGRFGEETEDEYCTICTGSL  401 (434)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  401 (434)
                      .|.+.|..++   +.+..+.-.             ..-.+.|++.|+.        ..+++||-.
T Consensus       171 ~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~--------~~lfVTGK~  224 (243)
T 3mbr_X          171 RIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH--------DRLFVTGKR  224 (243)
T ss_dssp             EEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT--------TEEEEEETT
T ss_pred             eEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCC--------CEEEEECCC
Confidence            9999999998   444444311             1356789999974        556666644

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.62  E-value=0.00015  Score=61.89  Aligned_cols=193  Identities=9%  Similarity=0.006  Sum_probs=115.7

Q ss_pred             ccEEEEEE--cCCEE-EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCCCce
Q 046226           93 GQILCIAV--GNGFI-YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDNGVK  166 (434)
Q Consensus        93 ~~v~~~~~--~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~~~~  166 (434)
                      ..+.++++  +++.| ++-..++.|.+++.........+...-.....++++++  .++.+.. .+.|.+++.+.... .
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-R  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-E
Confidence            35678888  34444 45556789999998765443333333346789999873  5665544 67899888754321 1


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec---CCcEEEEEcCCCeeEEEcc-cCccCeEEE
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL---DKTIKVWRIRDSKCIETIQ-AHSEPINAL  242 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~-~~~~~v~~~  242 (434)
                      .+.                     .........++++|++..|+.+..   .+.|..+++.... ...+. ........+
T Consensus       115 ~~~---------------------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gi  172 (267)
T 1npe_A          115 VLF---------------------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGL  172 (267)
T ss_dssp             EEE---------------------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEE
T ss_pred             EEE---------------------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEE
Confidence            110                     011235688999997777666654   3688888876432 22221 233467899


Q ss_pred             EEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          243 VVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       243 ~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                      ++++++  ++++-...+.|.++|+..   .   ........ ......++.. ++.++++....+.|..+|....+
T Consensus       173 a~d~~~~~lyv~d~~~~~I~~~~~~g---~---~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          173 TFDAFSSQLCWVDAGTHRAECLNPAQ---P---GRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTE---E---EEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEecCC---C---ceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCC
Confidence            999975  445555678999999861   1   11111111 2334566654 34444444456899999976443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.57  E-value=3.4e-05  Score=68.09  Aligned_cols=249  Identities=9%  Similarity=0.056  Sum_probs=133.1

Q ss_pred             EEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecc--ccccCcCCCeEEEEEecCCCEEE
Q 046226          135 VVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK--DKMMKHMGPITSIAINVSDDTLY  210 (434)
Q Consensus       135 v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~  210 (434)
                      ..++++.++  .++++..++.|..||..... ...+....  .....  ....+.  .........+..+++.+++..|+
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~--~~~~~--~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~   95 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYAS--PYWNK--AFCENSTDAEKRPLCGRTYDISYNLQNNQLY   95 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESC--TTCCH--HHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEeccc--ccccc--cccccccchhccccCCCCceEEEcCCCCcEE
Confidence            455677775  47888888999999876432 22111100  00000  000000  00001123578899997444566


Q ss_pred             EEecCCcEEEEEcCCCeeEEEccc-----CccCeEEEEEcC-CCeEEEEeC------------------CCeEEEEeccc
Q 046226          211 SASLDKTIKVWRIRDSKCIETIQA-----HSEPINALVVAD-DGVLYSASD------------------DATVRVWRRYF  266 (434)
Q Consensus       211 s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~l~s~~~------------------dg~i~iwd~~~  266 (434)
                      ++...+.|..+|..+++. ..+..     .......+++.+ ++.++.+..                  ++.|..||...
T Consensus        96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            665556688899776542 22211     123468899999 884444332                  36687887541


Q ss_pred             ccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccc-cccccCcccCcccceEEEEee--CCEE
Q 046226          267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSA-QLQYGGALQGHTHAVMCLASV--ANYV  342 (434)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l  342 (434)
                         ........    .......++++++++.|+++ ...+.|.+|++..... .......+.+    ...++++  |++.
T Consensus       175 ---~~~~~~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d~~G~l~  243 (322)
T 2fp8_A          175 ---KETTLLLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRNADGHFW  243 (322)
T ss_dssp             ---TEEEEEEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS----EEEEEECTTSCEE
T ss_pred             ---CEEEEecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC----CCCeEECCCCCEE
Confidence               11111111    12345679999999876655 5578999999864211 1111111112    4555655  5655


Q ss_pred             EEecC----------CCcEEEEeccCCCceeeEEEeeccc----cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226          343 ISGSA----------DSTSRVWAREQDGRHTMLAVLVGHR----GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       343 ~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw  408 (434)
                      ++...          .+.|..+|.. +   +.+..+....    ..++++++ .+         +.+.++....+.|..+
T Consensus       244 va~~~~~~~~~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~-~~---------g~L~v~~~~~~~i~~~  309 (322)
T 2fp8_A          244 VSSSEELDGNMHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQE-HD---------GLLYIGTLFHGSVGIL  309 (322)
T ss_dssp             EEEEEETTSSTTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEE-ET---------TEEEEECSSCSEEEEE
T ss_pred             EEecCcccccccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEE-eC---------CEEEEeecCCCceEEE
Confidence            55433          4667788764 3   3444443322    34566665 34         6677777788899999


Q ss_pred             ecCCCC
Q 046226          409 RVTRPK  414 (434)
Q Consensus       409 ~~~~~~  414 (434)
                      ++....
T Consensus       310 ~~~~~~  315 (322)
T 2fp8_A          310 VYDKKG  315 (322)
T ss_dssp             EC----
T ss_pred             eccccc
Confidence            987443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.57  E-value=4.1e-05  Score=74.70  Aligned_cols=266  Identities=9%  Similarity=-0.040  Sum_probs=133.8

Q ss_pred             cCCEEEEEeCCC-----------eEEEecCCCcee--Eeecc-CCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCC
Q 046226          101 GNGFIYTGSDSN-----------VIRIWKQPEFTE--CGRLK-AKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDN  163 (434)
Q Consensus       101 ~~~~l~tg~~dg-----------~i~iwd~~~~~~--~~~~~-~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~  163 (434)
                      ++++++.|+.++           .+.+||..+.+-  +..+. .+.....++++..+  .+++|+. +..+.+||..+..
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            778888887543           688999877542  22221 22333334555553  5555553 5689999987553


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cC-----CcEEEEEcCCCeeEEEc-----
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LD-----KTIKVWRIRDSKCIETI-----  232 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~-----  232 (434)
                      .....   ..                  .....-.++++.++++.++.|+ .+     ..+.+||..+.+-...-     
T Consensus       277 W~~~~---~~------------------~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~  335 (656)
T 1k3i_A          277 WIPGP---DM------------------QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN  335 (656)
T ss_dssp             EEECC---CC------------------SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred             eeECC---CC------------------CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc
Confidence            22111   00                  1111223445557899999888 34     56999999876533220     


Q ss_pred             ccCccCeEEEEEcCCC-eEEEEeCC---------CeEEEEecccccCcceeEEEEEecc------cccCeEEEEEec-CC
Q 046226          233 QAHSEPINALVVADDG-VLYSASDD---------ATVRVWRRYFYSENQLHTLILTLTA------KYSPVKTLTLTL-DD  295 (434)
Q Consensus       233 ~~~~~~v~~~~~~~~~-~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-~~  295 (434)
                      ......-. ..+..++ .++.++.+         ..+..||...  . ...........      ....-.++.+.. ++
T Consensus       336 p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~--~-~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~  411 (656)
T 1k3i_A          336 PMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG--S-GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG  411 (656)
T ss_dssp             GGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST--T-CEEEEEEECEETTEECCCCBTCEEEEEETTTT
T ss_pred             cccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCC--c-ceeecCCccccccccCCCCCCCceEeccCCCC
Confidence            00000000 1112233 44444444         3567777652  1 11111111110      011223444443 67


Q ss_pred             CEEEEEcCCC-----------eEEEEEcCcccccccccCcccCcccceEEEEe-eCCEEEEecCC-----------CcEE
Q 046226          296 GLLYGGCTDG-----------YIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-VANYVISGSAD-----------STSR  352 (434)
Q Consensus       296 ~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~d-----------g~i~  352 (434)
                      ++++.|+.++           .|.+||.....-.......+........++.. ++++++.|+.+           ..+.
T Consensus       412 ~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~  491 (656)
T 1k3i_A          412 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPE  491 (656)
T ss_dssp             EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCE
T ss_pred             eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceE
Confidence            7788877532           67788765332111100111111112233344 78888988854           4689


Q ss_pred             EEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226          353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL  401 (434)
Q Consensus       353 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~  401 (434)
                      +||..+. .+..+..+........+..+.|+         +++++.||.
T Consensus       492 ~ydp~t~-~W~~~~~~~~~R~~hs~a~ll~d---------g~v~v~GG~  530 (656)
T 1k3i_A          492 IYVPEQD-TFYKQNPNSIVRVYHSISLLLPD---------GRVFNGGGG  530 (656)
T ss_dssp             EEEGGGT-EEEECCCCSSCCCTTEEEEECTT---------SCEEEEECC
T ss_pred             EEcCCCC-ceeecCCCCCccccccHhhcCCC---------cEEEecCCC
Confidence            9999875 33333322222222233445567         889999885

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.51  E-value=0.00051  Score=61.16  Aligned_cols=235  Identities=10%  Similarity=-0.001  Sum_probs=136.5

Q ss_pred             cccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCCCcee
Q 046226           92 DGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus        92 ~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~~~~~  167 (434)
                      .+..+|.+. ...+|+.+. ...|+..++........+.. ......++|++.  .|+.+. ..+.|..+++........
T Consensus        33 ~d~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  110 (349)
T 3v64_C           33 PDRRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  110 (349)
T ss_dssp             TTSSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCCCcccccccCceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence            334456665 344555444 45688888766554443333 345789999863  555554 478888888765432211


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE-EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcC
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD  246 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  246 (434)
                      ..                      ........+++.+.+..|+ +-...+.|.+.+++.......+.........+++.|
T Consensus       111 ~~----------------------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp  168 (349)
T 3v64_C          111 VS----------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHP  168 (349)
T ss_dssp             EC----------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEET
T ss_pred             Ee----------------------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEec
Confidence            10                      1223457888887655554 445567899999875443333333345678999998


Q ss_pred             CC--eEEEEeCC-CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCccccccccc
Q 046226          247 DG--VLYSASDD-ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYG  322 (434)
Q Consensus       247 ~~--~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~  322 (434)
                      .+  ++++-... +.|..+++.   +.....   ...........+++++++..|+.+ ...+.|..+|+......... 
T Consensus       169 ~~g~ly~td~~~~~~I~r~~~d---G~~~~~---~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~-  241 (349)
T 3v64_C          169 MEGTIYWTDWGNTPRIEASSMD---GSGRRI---IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI-  241 (349)
T ss_dssp             TTTEEEEEECSSSCEEEEEETT---SCSCEE---SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-
T ss_pred             CcCeEEEeccCCCCEEEEEeCC---CCCcEE---EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEE-
Confidence            54  44444444 778888776   111111   111223457899999876666555 45678999998643221111 


Q ss_pred             CcccCcccceEEEEeeCC-EEEEecCCCcEEEEeccCCC
Q 046226          323 GALQGHTHAVMCLASVAN-YVISGSADSTSRVWAREQDG  360 (434)
Q Consensus       323 ~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~  360 (434)
                         .........+++.++ .+++-...+.|..++..++.
T Consensus       242 ---~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          242 ---SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             ---CSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ---eCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCC
Confidence               111223455665555 55555567888888866663

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=0.00013  Score=66.95  Aligned_cols=149  Identities=9%  Similarity=0.060  Sum_probs=88.2

Q ss_pred             EEEEEEeC-C--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE
Q 046226          135 VVAMEVSH-D--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS  211 (434)
Q Consensus       135 v~~l~~~~-~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  211 (434)
                      ...|+++| +  .|+++...+.|+.+|+.........                       ........++|++++++|++
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-----------------------~~~~~P~~ia~d~~G~~lyv  195 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-----------------------SGLSKVRTICWTHEADSMII  195 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-----------------------CCCSCEEEEEECTTSSEEEE
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-----------------------cCCCCcceEEEeCCCCEEEE
Confidence            46778886 2  6666665577777776543211111                       23456789999999997776


Q ss_pred             EecC-C----cEEEEEcCCCeeE--EEcccCccCeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccc
Q 046226          212 ASLD-K----TIKVWRIRDSKCI--ETIQAHSEPINALVVAD-DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK  282 (434)
Q Consensus       212 ~~~d-g----~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  282 (434)
                      +... +    .+.+.+. .+...  ..+. .......+++.| ++ ++++-..++.|..+|..   .. ........ ..
T Consensus       196 ad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~---~~-~~~~~~~~-~~  268 (430)
T 3tc9_A          196 TNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT---TQ-ETTPLFTI-QD  268 (430)
T ss_dssp             EECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT---TT-EEEEEEEC-SS
T ss_pred             EeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC---CC-cEEEEEEc-CC
Confidence            6542 2    2333443 23211  2222 123456788999 66 45555567889999876   11 11111122 12


Q ss_pred             ccCeEEEEEecCCCEEEE-EcCCCeEEEEEcC
Q 046226          283 YSPVKTLTLTLDDGLLYG-GCTDGYIHYWHKG  313 (434)
Q Consensus       283 ~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~  313 (434)
                      ......++++|++++|+. -...+.|..++..
T Consensus       269 ~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          269 SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            245678999999995544 4567899998865

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.47  E-value=0.00054  Score=59.76  Aligned_cols=227  Identities=9%  Similarity=-0.002  Sum_probs=122.8

Q ss_pred             ceeEeeccCCCccEEEEEEeCC-EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          122 FTECGRLKAKTSMVVAMEVSHD-RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~~-~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      .+.+..+... .....++|+++ .|+.+. .++.|..||.... .....                       ........
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-----------------------~~~~~p~g   76 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-----------------------TVEGKVSG   76 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-----------------------ECSSEEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-----------------------eCCCCcee
Confidence            4445555432 45778899886 455554 5788888886532 11111                       12235788


Q ss_pred             EEEecCCCEEEEEecCC--cEEEEEcCCCeeEEEccc-CccCeEEEEEcCCCe-EEEEeCCCeEEEEecccccCcceeEE
Q 046226          200 IAINVSDDTLYSASLDK--TIKVWRIRDSKCIETIQA-HSEPINALVVADDGV-LYSASDDATVRVWRRYFYSENQLHTL  275 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~  275 (434)
                      +++.++++++++.....  .|..+|..+++....... .......++..+++. +++-..++.|.++|....    ....
T Consensus        77 ia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~----~~~v  152 (306)
T 2p4o_A           77 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP----SGSI  152 (306)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT----EEEE
T ss_pred             EEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC----cEeE
Confidence            99999998665554322  477778777765332221 122334555566664 444446888888886410    0111


Q ss_pred             EEE--------ecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCcccCcccce--EEEEeeCCEEEE
Q 046226          276 ILT--------LTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQGHTHAV--MCLASVANYVIS  344 (434)
Q Consensus       276 ~~~--------~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s  344 (434)
                      ...        ..........+  +++++.|+++ ...+.|..||+... ........+. .....  .++..+|+++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~~~~~~~~~-~~~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          153 WLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-DKPGEPEIFV-EQTNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             EEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-SCBCCCEEEE-ESCCCSSEEEBTTCCEEEE
T ss_pred             EEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CCCCccEEEe-ccCCCCCeEECCCCCEEEE
Confidence            100        00111234455  7888766555 55789999998641 1110000000 00112  334445777777


Q ss_pred             ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEe---ec
Q 046226          345 GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF---LG  383 (434)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~---~~  383 (434)
                      ....+.|.++|.. + ....+..+.......++++|.   |+
T Consensus       229 ~~~~~~V~~~~~~-G-~~~~~~~~~~~~~~p~~~a~~g~~~d  268 (306)
T 2p4o_A          229 THIYNSVVRIAPD-R-STTIIAQAEQGVIGSTAVAFGQTEGD  268 (306)
T ss_dssp             CBTTCCEEEECTT-C-CEEEEECGGGTCTTEEEEEECCSTTT
T ss_pred             eCCCCeEEEECCC-C-CEEEEeecccccCCceEEEEecccCC
Confidence            7778899999875 3 112232333333557889998   66

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.44  E-value=0.00043  Score=58.01  Aligned_cols=205  Identities=13%  Similarity=0.034  Sum_probs=125.3

Q ss_pred             CcCCCeEEEEEecCCCEEE-EEecCCcEEEEEcCCCeeEEEccc-CccCeEEEEEcCCC-eEEEEeCCCeEEEEeccccc
Q 046226          192 KHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCIETIQA-HSEPINALVVADDG-VLYSASDDATVRVWRRYFYS  268 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~  268 (434)
                      +-...+..++++|+++.|+ +...++.|...|.. ++.+..+.. -......|++.+++ ++++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            4556799999999877665 46778899999997 887777642 22567889998888 44555567889998876322


Q ss_pred             CcceeEEEE-Ee--cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc--cccccCc----ccCcccceEEEEee-
Q 046226          269 ENQLHTLIL-TL--TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA--QLQYGGA----LQGHTHAVMCLASV-  338 (434)
Q Consensus       269 ~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~----~~~~~~~v~~~~~~-  338 (434)
                      ......... .+  ...+.....++|+|.++.|+++.+.....+|.++....  .......    -..+...+.+++++ 
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp  182 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ  182 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence            101111111 11  12345678999999998888887766666666541100  0110000    00112235677776 


Q ss_pred             --CCEEEEecCCCcEEEEeccCCCceeeEEEee-ccc------cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          339 --ANYVISGSADSTSRVWAREQDGRHTMLAVLV-GHR------GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       339 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~h~------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                        +.+++.......+.++|....  ......+. +..      ..-..|++.++         |++.++ ++-+.++.+.
T Consensus       183 ~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~---------G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          183 QKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDAS---------GNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             TTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTT---------CCEEEE-ETTTEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCC---------CCEEEE-cCCceEEEEE
Confidence              447777777888999997642  23333443 221      14567999988         775555 6666555543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.44  E-value=0.00052  Score=62.04  Aligned_cols=232  Identities=10%  Similarity=0.002  Sum_probs=134.5

Q ss_pred             EEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCCCceeeEe
Q 046226           95 ILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDNGVKHVKL  170 (434)
Q Consensus        95 v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~  170 (434)
                      -.|.+. ...+|+.+. ...|+..++........+.. ......++|++.  .|+.+. ..+.|..++........... 
T Consensus        79 ~~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-  155 (386)
T 3v65_B           79 RSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-  155 (386)
T ss_dssp             SCEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-
T ss_pred             CeECCccccceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-
Confidence            345555 334555444 45788888876554443333 345789999863  555554 46888888876443111110 


Q ss_pred             eeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE-EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-
Q 046226          171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-  248 (434)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  248 (434)
                                           ........+++.+.+..|+ +-...+.|.+.+++.......+.........+++.|.+ 
T Consensus       156 ---------------------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g  214 (386)
T 3v65_B          156 ---------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG  214 (386)
T ss_dssp             ---------------------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred             ---------------------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC
Confidence                                 1223456788887655554 44556789998886544333333334567899999865 


Q ss_pred             eE-EEEeCC-CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCcc
Q 046226          249 VL-YSASDD-ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGAL  325 (434)
Q Consensus       249 ~l-~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~  325 (434)
                      .| ++-... +.|..+++.   +......   ..........|++++++..|+.+ ...+.|..+|+.........    
T Consensus       215 ~ly~td~~~~~~I~r~~~d---G~~~~~~---~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~----  284 (386)
T 3v65_B          215 TIYWTDWGNTPRIEASSMD---GSGRRII---ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI----  284 (386)
T ss_dssp             EEEEEECSSSCEEEEEETT---SCSCEEE---ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE----
T ss_pred             eEEEeccCCCCEEEEEeCC---CCCcEEE---EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE----
Confidence            44 444444 678888765   2111111   11223457899999866666555 45678999997643221111    


Q ss_pred             cCcccceEEEEeeCC-EEEEecCCCcEEEEeccCCC
Q 046226          326 QGHTHAVMCLASVAN-YVISGSADSTSRVWAREQDG  360 (434)
Q Consensus       326 ~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~  360 (434)
                      .........+++.++ ++++-...+.|..++..++.
T Consensus       285 ~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          285 SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             CSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence            111223456666655 55566667889888866663

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.43  E-value=0.00069  Score=59.09  Aligned_cols=204  Identities=9%  Similarity=-0.005  Sum_probs=114.4

Q ss_pred             cceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEc--CC-e
Q 046226           80 SSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYG--DG-K  153 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~--dg-~  153 (434)
                      ...+.+..+... .....+++  +++++++-..++.|..||.... ....+. .......+++.++ .++++..  ++ .
T Consensus        20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIP   96 (306)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcce
Confidence            345555555322 45678888  6777777667899999997653 333222 2346888999886 4555543  22 3


Q ss_pred             EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee-EEEc
Q 046226          154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC-IETI  232 (434)
Q Consensus       154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~  232 (434)
                      |..+|..+++......   .+                  .......++..+++..+++-..++.|+++|..+++. +...
T Consensus        97 v~~~d~~~g~~~~~~~---~~------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~  155 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLT---LP------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLE  155 (306)
T ss_dssp             EEEEECTTSCEEEEEE---CT------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCeEEEEEe---CC------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEE
Confidence            5555654443211111   00                  111223344444444444444588999999876531 2110


Q ss_pred             ---------ccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226          233 ---------QAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       233 ---------~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                               .......+.+  ++++  ++++-...+.|..+|+...............    .....++++++|+++++.
T Consensus       156 ~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~  229 (306)
T 2p4o_A          156 HPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGAT  229 (306)
T ss_dssp             CGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEEC
T ss_pred             CCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEe
Confidence                     0111234555  6666  4555567789999998621111111111111    345678999999887777


Q ss_pred             cCCCeEEEEEcC
Q 046226          302 CTDGYIHYWHKG  313 (434)
Q Consensus       302 ~~dg~i~i~d~~  313 (434)
                      ...+.|.++|..
T Consensus       230 ~~~~~V~~~~~~  241 (306)
T 2p4o_A          230 HIYNSVVRIAPD  241 (306)
T ss_dssp             BTTCCEEEECTT
T ss_pred             CCCCeEEEECCC
Confidence            778899999864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.40  E-value=0.00067  Score=61.32  Aligned_cols=200  Identities=11%  Similarity=-0.004  Sum_probs=119.8

Q ss_pred             cCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC-C-eEEEEeCCCeEEEEecccccC
Q 046226          193 HMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-G-VLYSASDDATVRVWRRYFYSE  269 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~  269 (434)
                      ....+..++|.+.+..|+.. ...+.|..+++........+.........+++.+. + ++++-...+.|.+.++.   +
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d---g  190 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD---G  190 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT---S
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC---C
Confidence            34457899999866666544 45678999998766543333333345567888864 4 55566667888888775   2


Q ss_pred             cceeEEEEEecccccCeEEEEEecCCCEEEEEcC-C-CeEEEEEcCcccccccccCcccCcccceEEEEee--CC-EEEE
Q 046226          270 NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-D-GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--AN-YVIS  344 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s  344 (434)
                      ......   ..........++++|.+..|+.... . +.|..+++.........    .........++++  +. ++++
T Consensus       191 ~~~~~l---~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~----~~~~~~PnGlavd~~~~~lY~a  263 (386)
T 3v65_B          191 AHRKVL---LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA----DTHLFWPNGLTIDYAGRRMYWV  263 (386)
T ss_dssp             CSCEEE---ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE----CSSCSCEEEEEEEGGGTEEEEE
T ss_pred             CceEEe---ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE----ECCCCCeeeEEEeCCCCEEEEE
Confidence            111111   2223356789999987766665543 4 68888887543221111    1112234667765  44 4555


Q ss_pred             ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          345 GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      -...+.|..+|+..... .  ..+.........+++. .         +.++++-...+.|..++..+++.
T Consensus       264 D~~~~~I~~~d~dG~~~-~--~~~~~~~~~P~giav~-~---------~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          264 DAKHHVIERANLDGSHR-K--AVISQGLPHPFAITVF-E---------DSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             ETTTTEEEEECTTSCSC-E--EEECSSCSSEEEEEEE-T---------TEEEEEETTTTEEEEEETTTCCS
T ss_pred             ECCCCEEEEEeCCCCee-E--EEEECCCCCceEEEEE-C---------CEEEEeeCCCCeEEEEECCCCcc
Confidence            55677899999875422 1  1222223345667773 3         55677777788888888655554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.36  E-value=0.0011  Score=58.09  Aligned_cols=202  Identities=10%  Similarity=-0.012  Sum_probs=118.1

Q ss_pred             cCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCC----CeeEEEcccCccCeEEEEEcC-CC-eEEEEeCCCeEEEEecc
Q 046226          193 HMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRD----SKCIETIQAHSEPINALVVAD-DG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~  265 (434)
                      ....+..++|++.++.|+.+ ..++.|..+++..    ......+.........+++.+ ++ ++++-...+.|.++|+.
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            34567899999876666554 4568999999875    222222322234567888885 44 55555677899999876


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC--CeEEEEEcCcccccccccCcccCcccceEEEEee--CCE
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD--GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANY  341 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  341 (434)
                         +.......   .........++++|.+..|+.+...  +.|..+++....... +.   ...-.....++++  ++.
T Consensus       108 ---g~~~~~~~---~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~-~~---~~~~~~P~gla~d~~~~~  177 (316)
T 1ijq_A          108 ---GVKRKTLF---RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-LV---TENIQWPNGITLDLLSGR  177 (316)
T ss_dssp             ---SSSEEEEE---ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-EE---CSSCSCEEEEEEETTTTE
T ss_pred             ---CCceEEEE---ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE-EE---ECCCCCceEEEEeccCCE
Confidence               22222211   2233467899999976666555443  688888875332211 11   1112345667776  444


Q ss_pred             -EEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          342 -VISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       342 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                       +++-...+.|..+|+..... ..+......-.....+++. .         +.++++-...+.|..++..+++.
T Consensus       178 lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~---------~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          178 LYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-E---------DKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             EEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-T---------TEEEEEETTTTEEEEEETTTCCC
T ss_pred             EEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-C---------CEEEEEECCCCeEEEEeCCCCcc
Confidence             44555667999999875322 2222221122335667774 3         55677777788899888766654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.35  E-value=0.0011  Score=57.96  Aligned_cols=226  Identities=14%  Similarity=0.062  Sum_probs=130.8

Q ss_pred             EEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCC---CCceeeEeeeccCCC
Q 046226          104 FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWD---NGVKHVKLATIPKTG  177 (434)
Q Consensus       104 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~---~~~~~~~~~~~~~~~  177 (434)
                      +|+.+.. ..|+..|+.+.+....+.. -.....++|++.  .|+.+.. ++.|..+++...   .....+         
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~---------   71 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---------   71 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE---------
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE---------
Confidence            3444443 5688888887665544443 445789999874  5655544 688888887642   111111         


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEE-EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD  255 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~  255 (434)
                            .      .........+++.+.+..|+ +-..++.|.+.|+........+.........+++.|.+ .|+.+..
T Consensus        72 ------~------~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~  139 (316)
T 1ijq_A           72 ------I------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW  139 (316)
T ss_dssp             ------E------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred             ------E------eCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc
Confidence                  0      01223457888887555555 44567899999987543333333334567899999854 4444443


Q ss_pred             -C-CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCcccccccccCcccCcccce
Q 046226          256 -D-ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQLQYGGALQGHTHAV  332 (434)
Q Consensus       256 -d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  332 (434)
                       . +.|...++.   +.... .+  ..........+++++++..|+.+. ..+.|..+|+...... .+. .........
T Consensus       140 ~~~~~I~~~~~d---G~~~~-~~--~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~-~~~~~~~~P  211 (316)
T 1ijq_A          140 GTPAKIKKGGLN---GVDIY-SL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TIL-EDEKRLAHP  211 (316)
T ss_dssp             SSSCEEEEEETT---SCCEE-EE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-ECTTTTSSE
T ss_pred             CCCCeEEEEcCC---CCCeE-EE--EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEe-ecCCccCCc
Confidence             3 678888765   22111 11  112334678999998777666554 5679999998642221 111 111112234


Q ss_pred             EEEEeeCC-EEEEecCCCcEEEEeccCCC
Q 046226          333 MCLASVAN-YVISGSADSTSRVWAREQDG  360 (434)
Q Consensus       333 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~  360 (434)
                      ..+++++. ++++-...+.|..++..++.
T Consensus       212 ~giav~~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          212 FSLAVFEDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence            56666655 55555567889999987663

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.33  E-value=0.0015  Score=58.17  Aligned_cols=199  Identities=10%  Similarity=-0.006  Sum_probs=119.4

Q ss_pred             CCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC-C-eEEEEeCCCeEEEEecccccCc
Q 046226          194 MGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-G-VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      ...+..++|++.++.|+.. ...+.|..+++........+.........+++.+. + ++++-...+.|.+.++.   +.
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d---G~  148 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD---GA  148 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---SC
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC---CC
Confidence            3457899999876666655 45688999998766543333333345578888864 4 55666667889999876   22


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEc-CC-CeEEEEEcCcccccccccCcccCcccceEEEEee--CC-EEEEe
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TD-GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--AN-YVISG  345 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~  345 (434)
                      ... ..  ..........++++|.+..|+... .. +.|..+++.........    .........++++  +. +.++-
T Consensus       149 ~~~-~l--~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~----~~~~~~PnGla~d~~~~~lY~aD  221 (349)
T 3v64_C          149 HRK-VL--LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA----DTHLFWPNGLTIDYAGRRMYWVD  221 (349)
T ss_dssp             SCE-EE--ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC----CSSCSCEEEEEEETTTTEEEEEE
T ss_pred             ceE-EE--EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE----ECCCCCcceEEEeCCCCEEEEEE
Confidence            111 11  222335678999999666555544 44 78888887643221111    1122345667775  44 44455


Q ss_pred             cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          346 SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ...+.|..+|+..... ..  .+.........+++. .         +.+.++-...+.|...+..+++.
T Consensus       222 ~~~~~I~~~~~dG~~~-~~--~~~~~~~~P~giav~-~---------~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          222 AKHHVIERANLDGSHR-KA--VISQGLPHPFAITVF-E---------DSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             TTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEE-T---------TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCCEEEEEeCCCCce-EE--EEeCCCCCceEEEEE-C---------CEEEEecCCCCeEEEEEccCCCc
Confidence            5667899999875422 11  122223445667773 3         55666666778888887555554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.32  E-value=0.0018  Score=58.80  Aligned_cols=230  Identities=14%  Similarity=0.098  Sum_probs=134.0

Q ss_pred             CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      .+|+.+. ...|+..++........+. ....+..|+|++.  .|+.+. ..+.|..+++.........           
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~-----------  150 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-----------  150 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC-----------
T ss_pred             ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc-----------
Confidence            3444444 4678888887655444333 3456889999973  566554 4678888887542210000           


Q ss_pred             eeEEEeccccccCcCCCeEEEEEecCCCEEE-EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe--C
Q 046226          180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS--D  255 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~--~  255 (434)
                       ..+.      .........+++.+.+..|+ +-...+.|.+.+++.......+.........|++.|.+ .|+...  .
T Consensus       151 -~~~~------~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~  223 (400)
T 3p5b_L          151 -DTVI------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  223 (400)
T ss_dssp             -EEEE------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred             -eEEE------eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence             0000      01334577899987555454 54567889999987654444444344567899999854 544443  2


Q ss_pred             CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCcccccccccCcccCcccceEE
Q 046226          256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC  334 (434)
Q Consensus       256 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  334 (434)
                      .+.|...++.   +......   ..........|++++++..|+.+. ..+.|..+|+.........  ..........+
T Consensus       224 ~~~I~~~~~d---G~~~~~~---~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~--~~~~~l~~P~g  295 (400)
T 3p5b_L          224 PAKIKKGGLN---GVDIYSL---VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL--EDEKRLAHPFS  295 (400)
T ss_dssp             SCCEEEEETT---SCSCEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE--ECSSTTSSEEE
T ss_pred             CCEEEEEeCC---CCccEEE---EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE--eCCCCCCCCEE
Confidence            4678888776   2222111   122335678999998777776664 5678999998643222111  11112233456


Q ss_pred             EEeeCC-EEEEecCCCcEEEEeccCCC
Q 046226          335 LASVAN-YVISGSADSTSRVWAREQDG  360 (434)
Q Consensus       335 ~~~~~~-~l~s~~~dg~i~iwd~~~~~  360 (434)
                      ++..++ ++++-...+.|..+|..++.
T Consensus       296 l~v~~~~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          296 LAVFEDKVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EEEETTEEEEEESSSCSEEEEESSSCC
T ss_pred             EEEeCCEEEEecCCCCeEEEEEcCCCC
Confidence            666655 55566667889999977763

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.29  E-value=0.00014  Score=72.01  Aligned_cols=196  Identities=13%  Similarity=0.065  Sum_probs=108.4

Q ss_pred             CeEEEEEe-cCCCEEEEEec-CC----cEEEEEcCCC-eeEEEcccCccCeEEEEEcCCC-eEEEEeCC-----CeEEEE
Q 046226          196 PITSIAIN-VSDDTLYSASL-DK----TIKVWRIRDS-KCIETIQAHSEPINALVVADDG-VLYSASDD-----ATVRVW  262 (434)
Q Consensus       196 ~v~~~~~~-~~~~~l~s~~~-dg----~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d-----g~i~iw  262 (434)
                      .+...+|+ |||++|+.+.. +|    .|+++|+.++ +.+...  -......+.|+||+ .|+....|     ..|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            67889999 99998885533 23    5999999998 632110  01123568899998 55555544     257777


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc---CCCeEEEEEcCcccccc--cccCcccCcccceEEEEe
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC---TDGYIHYWHKGWFSAQL--QYGGALQGHTHAVMCLAS  337 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~  337 (434)
                      ++..  .......+... ........+.|+|||++|+...   ....|.++|+.......  ..  .............|
T Consensus       253 ~lgt--~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~--l~~~~~~~~~s~~~  327 (751)
T 2xe4_A          253 VMGK--LQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI--VRPREKGVRYDVQM  327 (751)
T ss_dssp             ETTS--CGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE--SSCCCTTCCEEEEE
T ss_pred             ECCC--CchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE--eecCCCCceEEEee
Confidence            7652  11111222221 2223456789999999888765   34578888886542222  11  11223344555553


Q ss_pred             -eCCEEEEec-CC----CcEEEEeccCCCceeeEEEeecccc--ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          338 -VANYVISGS-AD----STSRVWAREQDGRHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       338 -~~~~l~s~~-~d----g~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                       .++.|+..+ .+    ..|..+++.+.......  +..|..  .+..+.+.  .        +.++++...||..++|-
T Consensus       328 ~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~--------~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          328 HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--S--------NYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--S--------SEEEEEEEETTEEEEEE
T ss_pred             eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--C--------CEEEEEEEeCCEEEEEE
Confidence             366544433 33    25666676542221220  223333  34444443  1        56777888888765554


Q ss_pred             c
Q 046226          410 V  410 (434)
Q Consensus       410 ~  410 (434)
                      +
T Consensus       396 ~  396 (751)
T 2xe4_A          396 M  396 (751)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.28  E-value=0.0017  Score=57.11  Aligned_cols=234  Identities=7%  Similarity=-0.004  Sum_probs=123.3

Q ss_pred             cccEEEEEEcCCEEEEEeCCCeEEEec--CCCceeEeeccCCCccEEEEEEeC-CEEEEEEcCCeEEEeecCCCCCceee
Q 046226           92 DGQILCIAVGNGFIYTGSDSNVIRIWK--QPEFTECGRLKAKTSMVVAMEVSH-DRVYAAYGDGKIRVWRSTWDNGVKHV  168 (434)
Q Consensus        92 ~~~v~~~~~~~~~l~tg~~dg~i~iwd--~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~s~dg~i~vwd~~~~~~~~~~  168 (434)
                      ...+.++.++.+.++.++.++.|..-.  -++.+.+.....+...+..+.+.+ +.+++++.+|.|..- .+.++.-...
T Consensus        79 ~~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~  157 (327)
T 2xbg_A           79 DYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQAL  157 (327)
T ss_dssp             CCEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEE
T ss_pred             CccEEEEEecCCeEEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEe
Confidence            446888888444455556667555432  122333322222334577777654 466666666654321 1112221111


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEE-EEc--CCCeeEEEcccCccCeEEEEEc
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKV-WRI--RDSKCIETIQAHSEPINALVVA  245 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v-wd~--~~~~~~~~~~~~~~~v~~~~~~  245 (434)
                      .                     ......+..+++.+++.+++++. +|.+.. +|-  .+.+.+.  ......+..+.+.
T Consensus       158 ~---------------------~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~  213 (327)
T 2xbg_A          158 V---------------------QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFT  213 (327)
T ss_dssp             E---------------------CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEEC
T ss_pred             e---------------------cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEEC
Confidence            1                     02445688899999888777665 454444 442  2333332  2345678889998


Q ss_pred             CCCeEEEEeCCCeEEEEecccccCcceeEEEEEe-cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc
Q 046226          246 DDGVLYSASDDATVRVWRRYFYSENQLHTLILTL-TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA  324 (434)
Q Consensus       246 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  324 (434)
                      +++.++.++.+|.+++.+..   ........... ......+..+.+.+++..++++. +|.|.. ..+.. ........
T Consensus       214 ~~g~~~~~~~~G~~~~s~~D---~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~-S~DgG-~tW~~~~~  287 (327)
T 2xbg_A          214 PDGRLWMIVNGGKIAFSDPD---NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLC-SQDGG-QTWQQDVD  287 (327)
T ss_dssp             TTSCEEEEETTTEEEEEETT---EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEE-ESSTT-SSCEECGG
T ss_pred             CCCCEEEEeCCceEEEecCC---CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEE-eCCCC-cccEEcCc
Confidence            88866677778888776321   01111111100 01223578888988777666654 666633 32211 22222111


Q ss_pred             ccCcccceEEEEe-eCCEEEEecCCCcEEEEec
Q 046226          325 LQGHTHAVMCLAS-VANYVISGSADSTSRVWAR  356 (434)
Q Consensus       325 ~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~  356 (434)
                      .......+.++.+ ++..+++++.+|.|.-++-
T Consensus       288 ~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          288 VKKVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             GTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             cCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            1112234556666 4667777788998777654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.27  E-value=0.00091  Score=61.37  Aligned_cols=235  Identities=10%  Similarity=0.037  Sum_probs=124.0

Q ss_pred             EEEEEEeC----CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226          135 VVAMEVSH----DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY  210 (434)
Q Consensus       135 v~~l~~~~----~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  210 (434)
                      ...|++++    +.|+.+...+.|+.+|...+......                       ........++++++++ |+
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-----------------------~~~~~P~giavd~dG~-ly  196 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-----------------------TNIGQCADVNFTLNGD-MV  196 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-----------------------CCCSCEEEEEECTTCC-EE
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-----------------------cCCCCccEEEECCCCC-EE
Confidence            45778886    35666655577777776533221111                       2344588999999999 55


Q ss_pred             EEecCC-----cEEEEEcCCCee-EEEcccCccCeEEEEEcC-CCeEE-EEeCCCeEEEEecccccCcceeEEEEEeccc
Q 046226          211 SASLDK-----TIKVWRIRDSKC-IETIQAHSEPINALVVAD-DGVLY-SASDDATVRVWRRYFYSENQLHTLILTLTAK  282 (434)
Q Consensus       211 s~~~dg-----~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  282 (434)
                      .+...+     .+...+...+.. ...+. .......+++.+ ++.|+ +-..++.|+.+|..  .. ......... ..
T Consensus       197 Vad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~--~g-~~~~~~~~~-~~  271 (433)
T 4hw6_A          197 VVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA--TG-TLTEEEVMM-DT  271 (433)
T ss_dssp             EEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT--TC-CEEEEEEEC-SC
T ss_pred             EEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC--CC-eEEEEEecc-CC
Confidence            554322     233333322111 01111 223456788898 66444 44567889888865  11 111111111 11


Q ss_pred             ccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCccccccc----ccCc--ccC---------cccceEEEEe---------
Q 046226          283 YSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQ----YGGA--LQG---------HTHAVMCLAS---------  337 (434)
Q Consensus       283 ~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~----~~~~--~~~---------~~~~v~~~~~---------  337 (434)
                      ......++++|++++|+.+ ...+.|+.+++........    +...  ..+         .-.....+++         
T Consensus       272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d  351 (433)
T 4hw6_A          272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE  351 (433)
T ss_dssp             CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred             CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence            2233469999999955554 5578999988653211110    0000  000         1122455666         


Q ss_pred             e--CCEEEEecCCCcEEEEeccCCCceeeEEEeecc------------------ccceeEEEEeecccCCCCCCcccEEE
Q 046226          338 V--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGH------------------RGPIRCAIAFLGRFGEETEDEYCTIC  397 (434)
Q Consensus       338 ~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~~~~~~~~l~  397 (434)
                      +  ++++++-...+.|+.++. ++   . +..+.+.                  -.....|++.|..        +.+++
T Consensus       352 d~~g~lyvaD~~n~~I~~~~~-~G---~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~--------g~lyV  418 (433)
T 4hw6_A          352 EDEYDFYFCDRDSHTVRVLTP-EG---R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKR--------KCFYI  418 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEECT-TS---E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT--------TEEEE
T ss_pred             CCCCcEEEEECCCCEEEEECC-CC---C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCC--------CEEEE
Confidence            4  345566666778888874 33   2 2222211                  1235677887331        66666


Q ss_pred             EeecCCeEEEEecC
Q 046226          398 TGSLDGVLKMWRVT  411 (434)
Q Consensus       398 s~~~Dg~v~iw~~~  411 (434)
                      +=...+.|+..+++
T Consensus       419 aD~~n~rIr~i~~e  432 (433)
T 4hw6_A          419 GDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEGGGTEEEEEEEC
T ss_pred             EeCCCCEEEEEecC
Confidence            66667788877764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.25  E-value=0.0019  Score=56.49  Aligned_cols=218  Identities=12%  Similarity=0.076  Sum_probs=127.5

Q ss_pred             CCeEEEecCCCce--eEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226          111 SNVIRIWKQPEFT--ECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV  185 (434)
Q Consensus       111 dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
                      ...|+..++....  ....+. .......++|++.  .|+.+. ..+.|..++............               
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~---------------   75 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV---------------   75 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE---------------
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc---------------
Confidence            4678888887643  111111 2234678889863  555554 467888888765422111100               


Q ss_pred             ccccccCcCCCeEEEEEecCCCEEE-EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC-CeEEEEe--CCCeEEE
Q 046226          186 GKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-GVLYSAS--DDATVRV  261 (434)
Q Consensus       186 ~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~s~~--~dg~i~i  261 (434)
                            ........+++.+.+..|+ +-...+.|.+++++.......+.........+++.|. +.|+.+.  ..+.|..
T Consensus        76 ------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r  149 (318)
T 3sov_A           76 ------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIER  149 (318)
T ss_dssp             ------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEE
T ss_pred             ------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEE
Confidence                  1223466788887555554 4455678999998654332223334456789999985 4555444  3577888


Q ss_pred             EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN  340 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  340 (434)
                      .++.   +......   ....-.....+++++++..|+.+ ...+.|..+|+....... +.   .+.......++++++
T Consensus       150 ~~~d---G~~~~~~---~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~-~~---~~~~~~P~glav~~~  219 (318)
T 3sov_A          150 AGMD---GSSRFII---INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA-VV---KGSLPHPFALTLFED  219 (318)
T ss_dssp             EETT---SCSCEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EE---CSCCSCEEEEEEETT
T ss_pred             EEcC---CCCeEEE---EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEE-Ee---cCCCCCceEEEEeCC
Confidence            8765   2111111   11223456899999976666655 457889999986422221 11   112234466666655


Q ss_pred             -EEEEecCCCcEEEEeccCCC
Q 046226          341 -YVISGSADSTSRVWAREQDG  360 (434)
Q Consensus       341 -~l~s~~~dg~i~iwd~~~~~  360 (434)
                       ++++-...+.|..++..+++
T Consensus       220 ~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          220 ILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEecCCCeEEEEECCCCC
Confidence             55555667889999987764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.25  E-value=0.0014  Score=54.85  Aligned_cols=204  Identities=11%  Similarity=0.062  Sum_probs=128.5

Q ss_pred             EeeccccEEEEEE--cCC-EEEEEeCCCeEEEecCCCceeEeeccC-CCccEEEEEEeCC-EEEEEE-cCCeEEEeecCC
Q 046226           88 VLKKDGQILCIAV--GNG-FIYTGSDSNVIRIWKQPEFTECGRLKA-KTSMVVAMEVSHD-RVYAAY-GDGKIRVWRSTW  161 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~-~l~~~s-~dg~i~vwd~~~  161 (434)
                      +.+-.+.+..+++  +++ ++++...++.|...|.. ++.+..+.- .......|++.++ .++.+. .++.+.++++..
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            3344467999999  344 55567778899999987 777777632 2245788888876 554554 477899998876


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC---CeeEEEcc-----
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD---SKCIETIQ-----  233 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~-----  233 (434)
                      ...+........+.             .....+.....++|+|.++.|+++.+.....+|.+..   ...+..+.     
T Consensus       101 ~~~i~~~~~~~~~~-------------~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~  167 (255)
T 3qqz_A          101 NSEVKILKKIKIPL-------------QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQ  167 (255)
T ss_dssp             TCCEEEEEEEECCC-------------SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHH
T ss_pred             CCeeeeeeeecccc-------------ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhc
Confidence            55432222211110             0013456689999999998888887766656665541   11122221     


Q ss_pred             --cCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEec-cc------ccCeEEEEEecCCCEEEEEc
Q 046226          234 --AHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLT-AK------YSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       234 --~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~------~~~v~~~~~~~~~~~l~~~~  302 (434)
                        .+...+.+++++|..  +++.......|.++|..   +.  ......+. +.      ......|+|.++|++.++ +
T Consensus       168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~---g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s  241 (255)
T 3qqz_A          168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV---GE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S  241 (255)
T ss_dssp             HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT---CC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred             cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC---CC--EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence              123457899999877  67777778889999876   21  22222333 11      136789999999985554 6


Q ss_pred             CCCeEEEEE
Q 046226          303 TDGYIHYWH  311 (434)
Q Consensus       303 ~dg~i~i~d  311 (434)
                      +...++.|.
T Consensus       242 E~n~~y~f~  250 (255)
T 3qqz_A          242 EPNRFYRFT  250 (255)
T ss_dssp             TTTEEEEEE
T ss_pred             CCceEEEEE
Confidence            667666664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.25  E-value=0.00078  Score=58.72  Aligned_cols=192  Identities=10%  Similarity=0.153  Sum_probs=117.2

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCE--------EEEEEc----CCeEEEeecCCCC-Cceee
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDR--------VYAAYG----DGKIRVWRSTWDN-GVKHV  168 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~--------l~~~s~----dg~i~vwd~~~~~-~~~~~  168 (434)
                      ..+++.....+-+.+||+ +++.+..+..  +.++.+..-|+.        ++.++.    +++|.+|++.... .+..+
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            345565667789999999 8888888764  567777777653        444443    4789999774221 12211


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCCeEEEEE--ecC-CC-EEEEEecCCcEEEEEcC-------CCeeEEEcccCcc
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI--NVS-DD-TLYSASLDKTIKVWRIR-------DSKCIETIQAHSE  237 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~s~~~dg~i~vwd~~-------~~~~~~~~~~~~~  237 (434)
                      .....+     +          ..-...+..+|+  ++. +. ++++...+|.+..|++.       +.+.++++.. ..
T Consensus       117 ~~~~~p-----v----------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gs  180 (355)
T 3amr_A          117 TDPDHP-----I----------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NS  180 (355)
T ss_dssp             SCTTSC-----E----------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SS
T ss_pred             cccccC-----c----------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CC
Confidence            000000     0          001145666777  564 43 67788889999999983       3456777764 34


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec--ccccCeEEEEEe--cCCC-EEEEEc-CCCeEEEE
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT--AKYSPVKTLTLT--LDDG-LLYGGC-TDGYIHYW  310 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~--~~~~-~l~~~~-~dg~i~i~  310 (434)
                      .+..+...+.. .|+.+-++.-|..+|.+.... .....+....  .....+..|++-  ++++ +|++++ .+....+|
T Consensus       181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy  259 (355)
T 3amr_A          181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY  259 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             CcceEEEcCCCCeEEEecccceEEEEeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence            67778887665 999999986665555431111 1223333331  222468888884  4555 566555 57799999


Q ss_pred             EcC
Q 046226          311 HKG  313 (434)
Q Consensus       311 d~~  313 (434)
                      |..
T Consensus       260 dr~  262 (355)
T 3amr_A          260 DRQ  262 (355)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            974

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.17  E-value=0.0038  Score=56.61  Aligned_cols=203  Identities=10%  Similarity=-0.013  Sum_probs=120.5

Q ss_pred             cCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCC----eeEEEcccCccCeEEEEEcC-CC-eEEEEeCCCeEEEEecc
Q 046226          193 HMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDS----KCIETIQAHSEPINALVVAD-DG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~  265 (434)
                      ....+..++|++.+..|+.+ ...+.|+.+++...    .....+.........+++.. .+ ++++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            45678899999876666655 45678999998652    22233333445677889886 44 55566677889998876


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC--CCeEEEEEcCcccccccccCcccCcccceEEEEee--CCE
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT--DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANY  341 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  341 (434)
                         +......   ..........|+++|.+.+|+....  .+.|...++.........    ...-.....++++  +..
T Consensus       190 ---g~~~~~l---~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~----~~~l~~P~glavd~~~~~  259 (400)
T 3p5b_L          190 ---GVKRKTL---FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----TENIQWPNGITLDLLSGR  259 (400)
T ss_dssp             ---TCSEEEE---EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE----CSSCSCEEEEEEETTTTE
T ss_pred             ---CCceEEE---EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE----ECCCCceEEEEEEeCCCE
Confidence               2222221   1223345789999997666666543  378888887643222111    1122345667776  444


Q ss_pred             E-EEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          342 V-ISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       342 l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      | ++-...+.|..+|+..... ..+....+.-.....+++..          +.++++-...+.|..++..+++..
T Consensus       260 lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~----------~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          260 LYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE----------DKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             EEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEET----------TEEEEEESSSCSEEEEESSSCCCC
T ss_pred             EEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEeC----------CEEEEecCCCCeEEEEEcCCCCce
Confidence            4 4445567899999875432 22222212223345666632          456667777788988887666544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.12  E-value=0.009  Score=58.99  Aligned_cols=237  Identities=16%  Similarity=0.113  Sum_probs=133.8

Q ss_pred             EEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCCCceeeEee
Q 046226           96 LCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus        96 ~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      +|.+. ...+|+... ...|+..++........+. ....+..|+|++.  .|+.+.. .+.|+.+++..........  
T Consensus       388 ~C~~~~~~p~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~--  463 (791)
T 3m0c_C          388 ACKAVGSIAYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--  463 (791)
T ss_dssp             CCEETTSCCEEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--
T ss_pred             eeeeccccccccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCccee--
Confidence            34444 233444443 4567777876654433333 3456788999873  5555544 6778888775421100000  


Q ss_pred             eccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-e
Q 046226          172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-V  249 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~  249 (434)
                                .+.      .........|++.+.++.|+.+ ...+.|.+.++........+.........|++.|.+ .
T Consensus       464 ----------~vi------~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~  527 (791)
T 3m0c_C          464 ----------TVI------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF  527 (791)
T ss_dssp             ----------EEE------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTE
T ss_pred             ----------EEE------ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCC
Confidence                      000      0133456788998877655544 557899999987554333333344567899999864 5


Q ss_pred             EEEEe-C-CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCccc
Q 046226          250 LYSAS-D-DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQ  326 (434)
Q Consensus       250 l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~  326 (434)
                      |+... . .+.|...++.   +.....+   ..........|++++.+..|+.+ ...+.|..+++.........  ...
T Consensus       528 LYwtD~g~~~~I~~~~~d---G~~~~~l---v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~--~~~  599 (791)
T 3m0c_C          528 MYWTDWGTPAKIKKGGLN---GVDIYSL---VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL--EDE  599 (791)
T ss_dssp             EEEEECSSSCEEEEEETT---SCCEEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--ECT
T ss_pred             EEEecCCCCCeEEEEecC---CCceEEE---EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe--cCC
Confidence            54443 3 3678888776   2222111   22233568899999876666665 44678999998643322211  111


Q ss_pred             CcccceEEEEeeCCEEE-EecCCCcEEEEeccCCC
Q 046226          327 GHTHAVMCLASVANYVI-SGSADSTSRVWAREQDG  360 (434)
Q Consensus       327 ~~~~~v~~~~~~~~~l~-s~~~dg~i~iwd~~~~~  360 (434)
                      .......+|+..+++|+ +-...+.|...|..++.
T Consensus       600 ~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          600 KRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             TTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence            11223456777766544 44556788888877763

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.11  E-value=0.00029  Score=68.65  Aligned_cols=205  Identities=10%  Similarity=0.020  Sum_probs=104.3

Q ss_pred             CCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEcccCcc-CeEEEEEcCCC-eEEEEe-CC-----CeEEEEecc
Q 046226          195 GPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIETIQAHSE-PINALVVADDG-VLYSAS-DD-----ATVRVWRRY  265 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~s~~-~d-----g~i~iwd~~  265 (434)
                      ....++++..++++++.|+. +..+.+||..+.+-...-..+.. .-.+++..+++ +++.|+ .+     ..+.+||..
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            33445677789999999884 45899999987653322111211 12345566566 777777 34     468899976


Q ss_pred             cccCcceeEEEEEe--cccccCeEEEEEecCCCEEEEEcCCC---------eEEEEEcCcccccccccCcccC------c
Q 046226          266 FYSENQLHTLILTL--TAKYSPVKTLTLTLDDGLLYGGCTDG---------YIHYWHKGWFSAQLQYGGALQG------H  328 (434)
Q Consensus       266 ~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~------~  328 (434)
                      .    .....+...  ......-....+..++..++.|+.+|         .+..||.....-.... .....      .
T Consensus       323 t----~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~-~~~~~~~~~~~~  397 (656)
T 1k3i_A          323 S----KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA-GKRQSNRGVAPD  397 (656)
T ss_dssp             T----TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE-EECEETTEECCC
T ss_pred             C----CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecC-CccccccccCCC
Confidence            1    122221000  00000000011223444445554443         5677876543211110 00000      0


Q ss_pred             ccceEEEE---eeCCEEEEecCCC-----------cEEEEeccCCCceeeEEEeeccccce-eEEEEeecccCCCCCCcc
Q 046226          329 THAVMCLA---SVANYVISGSADS-----------TSRVWAREQDGRHTMLAVLVGHRGPI-RCAIAFLGRFGEETEDEY  393 (434)
Q Consensus       329 ~~~v~~~~---~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~  393 (434)
                      ...-.++.   .++++++.|+.++           .|.+||..+.. +..+..-..+.... .+++..|+         +
T Consensus       398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~mp~~R~~~~~~~l~~---------g  467 (656)
T 1k3i_A          398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-NTVFASNGLYFARTFHTSVVLPD---------G  467 (656)
T ss_dssp             CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-EEEECTTCCSSCCBSCEEEECTT---------S
T ss_pred             CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC-eeEEccCCCCCCcccCCeEECCC---------C
Confidence            01112332   2466888887543           67888887652 22221001122222 34455666         8


Q ss_pred             cEEEEeecC-----------CeEEEEecCCCC
Q 046226          394 CTICTGSLD-----------GVLKMWRVTRPK  414 (434)
Q Consensus       394 ~~l~s~~~D-----------g~v~iw~~~~~~  414 (434)
                      ++++.||.+           ..+.+||..+.+
T Consensus       468 ~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          468 STFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence            899999865           568999987654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.07  E-value=0.011  Score=58.38  Aligned_cols=203  Identities=10%  Similarity=-0.025  Sum_probs=116.8

Q ss_pred             cCCCeEEEEEecCCCEEEE-EecCCcEEEEEcCCC----eeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecc
Q 046226          193 HMGPITSIAINVSDDTLYS-ASLDKTIKVWRIRDS----KCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRY  265 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~  265 (434)
                      ....+..|+|.+....|+. -...+.|+.+++...    .....+.........|++...+  ++++-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            4556788999986655554 445678999998752    2223333344556788888665  55566677899999886


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC--CCeEEEEEcCcccccccccCcccCcccceEEEEee--CCE
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT--DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANY  341 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  341 (434)
                         +.....+   ..........|+++|.+.+|+....  .+.|...++.........    ...-.....|+++  +..
T Consensus       502 ---G~~~~~l---~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv----~~~l~~P~GLavD~~~~~  571 (791)
T 3m0c_C          502 ---GVKRKTL---FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----TENIQWPNGITLDLLSGR  571 (791)
T ss_dssp             ---SSSEEEE---EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE----CSSCSCEEEEEEETTTTE
T ss_pred             ---CCeEEEE---EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE----eCCCCCceEEEEecCCCe
Confidence               2222222   1223346789999997666666543  268888887643322111    1122345667766  444


Q ss_pred             E-EEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          342 V-ISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       342 l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      | ++-...+.|..+++..... ..+..-.+.-....+|++..          +.++++-...+.|...+..+++..
T Consensus       572 LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~----------~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          572 LYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE----------DKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             EEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET----------TEEEEEETTTTEEEEEETTTCCCC
T ss_pred             EEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeC----------CEEEEEECCCCEEEEEeCCCCcce
Confidence            4 4445567899999875432 22221111122334566542          345555556678888876666543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.06  E-value=0.0046  Score=53.44  Aligned_cols=208  Identities=9%  Similarity=0.056  Sum_probs=120.1

Q ss_pred             CccEEEEEEeC--CEEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE---ecC
Q 046226          132 TSMVVAMEVSH--DRVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI---NVS  205 (434)
Q Consensus       132 ~~~v~~l~~~~--~~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~  205 (434)
                      ...-.+++|++  ..++.++ ..++|..||...+..... .+......+              .....+..|.|   .|+
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g--------------~~~~~~sGl~~~~~D~~   76 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNG--------------DGEQQMSGLSLLTHDNS   76 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSS--------------CCSEEEEEEEESSSSSC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccC--------------CCcceeeEEEEeccCCC
Confidence            33445678987  4777777 589999999764322211 110000000              01123578899   588


Q ss_pred             CCEEEEEec-------------CCcEEEEEcC---CCeeEEEccc--C-----------ccCeEEEEEcCCC-eEEEEeC
Q 046226          206 DDTLYSASL-------------DKTIKVWRIR---DSKCIETIQA--H-----------SEPINALVVADDG-VLYSASD  255 (434)
Q Consensus       206 ~~~l~s~~~-------------dg~i~vwd~~---~~~~~~~~~~--~-----------~~~v~~~~~~~~~-~l~s~~~  255 (434)
                      ++++++...             +..|..+|+.   +++.+.....  .           ......++..++| ..++++.
T Consensus        77 grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~  156 (334)
T 2p9w_A           77 KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL  156 (334)
T ss_dssp             CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE
T ss_pred             CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC
Confidence            767665432             6779999998   7776654431  1           1247899999999 6777777


Q ss_pred             C-CeEEEEecccccCcceeEEEEEe--cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc-cccc--C---ccc
Q 046226          256 D-ATVRVWRRYFYSENQLHTLILTL--TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ-LQYG--G---ALQ  326 (434)
Q Consensus       256 d-g~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~--~---~~~  326 (434)
                      . +.|...+..   +..........  .......+.|+++|+++.|++....|.|..+|+...... ....  .   .+.
T Consensus       157 ~~~~I~rV~pd---G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~  233 (334)
T 2p9w_A          157 GMPAIARVSAD---GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLS  233 (334)
T ss_dssp             SSCEEEEECTT---SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCT
T ss_pred             CCCeEEEEeCC---CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCccccc
Confidence            7 777777654   11111111111  112234679999999999998877999999998732110 1000  0   111


Q ss_pred             CcccceEEEEeeCCE-EEEecCCCcEEEEeccC
Q 046226          327 GHTHAVMCLASVANY-VISGSADSTSRVWAREQ  358 (434)
Q Consensus       327 ~~~~~v~~~~~~~~~-l~s~~~dg~i~iwd~~~  358 (434)
                      + ...+.....+|+. +++....+.+.+.+.+.
T Consensus       234 ~-~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          234 G-TEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             T-EEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             C-cccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            1 1222233446776 55555566666665544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.05  E-value=0.0039  Score=54.21  Aligned_cols=154  Identities=10%  Similarity=0.119  Sum_probs=79.7

Q ss_pred             CCCEEEEEecC------CcEEEEEcCCCeeEE--EcccCccCeEEEEEcCCC-eEEEEeC---------CCeEEEEeccc
Q 046226          205 SDDTLYSASLD------KTIKVWRIRDSKCIE--TIQAHSEPINALVVADDG-VLYSASD---------DATVRVWRRYF  266 (434)
Q Consensus       205 ~~~~l~s~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~s~~~---------dg~i~iwd~~~  266 (434)
                      ++..++.|+.+      ..+.+||..+.+-..  .+......- +++.. ++ +++.|+.         -..+.+||+. 
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~-  177 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPA-  177 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEESCTTTCEECCCEEEEETT-
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEEE-CCEEEEECCCCCCCCcccccceEEEeCCC-
Confidence            56677777755      468899988765322  222111111 22233 44 5555553         3457888876 


Q ss_pred             ccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccceEEEEeeCCE
Q 046226          267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANY  341 (434)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  341 (434)
                         ......+..+....... +++.. ++++++.|+.+     ..+.+||+...  .......+........++..++.+
T Consensus       178 ---~~~W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i  250 (306)
T 3ii7_A          178 ---TETWTELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAVGSIV  250 (306)
T ss_dssp             ---TTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEETTEE
T ss_pred             ---CCeEEECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEECCEE
Confidence               12333332222211122 22222 56677777653     46888987643  222222222222233444556777


Q ss_pred             EEEecCC-----CcEEEEeccCCCceeeEEEee
Q 046226          342 VISGSAD-----STSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       342 l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~  369 (434)
                      ++.|+.+     ..+.+||+.+. .+..+..+.
T Consensus       251 ~v~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~  282 (306)
T 3ii7_A          251 YVLAGFQGVGRLGHILEYNTETD-KWVANSKVR  282 (306)
T ss_dssp             EEEECBCSSSBCCEEEEEETTTT-EEEEEEEEE
T ss_pred             EEEeCcCCCeeeeeEEEEcCCCC-eEEeCCCcc
Confidence            7888754     46888998875 444544444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.04  E-value=0.0029  Score=54.84  Aligned_cols=151  Identities=16%  Similarity=0.124  Sum_probs=77.7

Q ss_pred             CCCEEEEEecC-----CcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCC-----CeEEEEecccccCcc
Q 046226          205 SDDTLYSASLD-----KTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDD-----ATVRVWRRYFYSENQ  271 (434)
Q Consensus       205 ~~~~l~s~~~d-----g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~d-----g~i~iwd~~~~~~~~  271 (434)
                      ++..++.|+.+     ..+.+||+.+.+-  +..+......- +++.. ++ +++.|+.+     ..+.+||+.    ..
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~----~~  185 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVVA-SGVIYCLGGYDGLNILNSVEKYDPH----TG  185 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCCEEEEETT----TT
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEEE-CCEEEEECCCCCCcccceEEEEeCC----CC
Confidence            56667777654     3688999877642  22332222222 22233 45 66666654     457888876    12


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEec
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGS  346 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~  346 (434)
                      ....+..+.........+.  -++.+++.|+.+     ..+.+||+....  ......+........++..++.+++.|+
T Consensus       186 ~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG  261 (301)
T 2vpj_A          186 HWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVLRGRLYAIAG  261 (301)
T ss_dssp             EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred             cEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCc--EEECCCCCCcccceeEEEECCEEEEEcC
Confidence            3333322222211222222  256777777654     468899986432  2222222222222234445677777777


Q ss_pred             CC-----CcEEEEeccCCCceeeEE
Q 046226          347 AD-----STSRVWAREQDGRHTMLA  366 (434)
Q Consensus       347 ~d-----g~i~iwd~~~~~~~~~~~  366 (434)
                      .+     ..+.+||+++. .+..+.
T Consensus       262 ~~~~~~~~~v~~yd~~~~-~W~~~~  285 (301)
T 2vpj_A          262 YDGNSLLSSIECYDPIID-SWEVVT  285 (301)
T ss_dssp             BCSSSBEEEEEEEETTTT-EEEEEE
T ss_pred             cCCCcccccEEEEcCCCC-eEEEcC
Confidence            65     35788888775 334433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.03  E-value=0.0014  Score=64.97  Aligned_cols=193  Identities=13%  Similarity=0.049  Sum_probs=103.3

Q ss_pred             cEEEEEEe-CC--EEEEEE-cCC----eEEEeecCCC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec
Q 046226          134 MVVAMEVS-HD--RVYAAY-GDG----KIRVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV  204 (434)
Q Consensus       134 ~v~~l~~~-~~--~l~~~s-~dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  204 (434)
                      .+...+|+ ||  .++.+. .+|    .|+++|+.++ +.+...                        -......++|+|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~------------------------~~~~~~~~~Wsp  230 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK------------------------VSGTNGEIVWGP  230 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC------------------------EEEECSCCEECS
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc------------------------ccCceeeEEEec
Confidence            67889999 88  454433 333    4999999876 421110                        001134678999


Q ss_pred             CCCEEEEEecC-----CcEEEEEcCCCee--EEEcc-cCccCeEEEEEcCCC-eEEEEe---CCCeEEEEecccccCcce
Q 046226          205 SDDTLYSASLD-----KTIKVWRIRDSKC--IETIQ-AHSEPINALVVADDG-VLYSAS---DDATVRVWRRYFYSENQL  272 (434)
Q Consensus       205 ~~~~l~s~~~d-----g~i~vwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~~~~~~  272 (434)
                      |++.|+....|     ..|+++++.+++.  ...+. ........+.|+||+ .|+...   ....|.++|+.....  .
T Consensus       231 Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~--~  308 (751)
T 2xe4_A          231 DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA--H  308 (751)
T ss_dssp             STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT--C
T ss_pred             CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC--C
Confidence            99888877665     3688889877642  22222 223456688999999 554433   234677778762111  1


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEEEcCC----CeEEEEEcCcccccccccCc-ccCc--ccceEEEEeeCC-EEEE
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD----GYIHYWHKGWFSAQLQYGGA-LQGH--THAVMCLASVAN-YVIS  344 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~-~l~s  344 (434)
                      ...............++.|+.++.+++....+    ..|..+|+... ....   . +..+  ...+..+.+.++ ++++
T Consensus       309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~---~~li~~~~~~~l~~~~~~~~~lv~~  384 (751)
T 2xe4_A          309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP-SDWS---HVLVDHSEDVFMESIAVRSNYLVVA  384 (751)
T ss_dssp             CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST-TCCC---CEEECCCSSEEEEEEEECSSEEEEE
T ss_pred             ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc-ccce---eeEECCCCCcEEEEEEEECCEEEEE
Confidence            10011122233445555554444444444433    35666666432 1111   1 1122  224566777766 4556


Q ss_pred             ecCCCcE--EEEec
Q 046226          345 GSADSTS--RVWAR  356 (434)
Q Consensus       345 ~~~dg~i--~iwd~  356 (434)
                      ...++..  +++++
T Consensus       385 ~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          385 GRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEETTEEEEEEEEC
T ss_pred             EEeCCEEEEEEEec
Confidence            6667754  45554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.00  E-value=0.0037  Score=54.16  Aligned_cols=206  Identities=7%  Similarity=0.030  Sum_probs=105.0

Q ss_pred             CCCEEEEEecC-----CcEEEEEcCCCe-----eEEEcccCccCeEEEEEcCCC-eEEEEeCC-----CeEEEEeccccc
Q 046226          205 SDDTLYSASLD-----KTIKVWRIRDSK-----CIETIQAHSEPINALVVADDG-VLYSASDD-----ATVRVWRRYFYS  268 (434)
Q Consensus       205 ~~~~l~s~~~d-----g~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d-----g~i~iwd~~~~~  268 (434)
                      ++..++.|+.+     ..+.+||..+.+     .+..+....... +++.. ++ +++.|+.+     ..+.+||+.   
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~---  136 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATTL-GDMIYVSGGFDGSRRHTSMERYDPN---  136 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCEEEEEETT---
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEEE-CCEEEEEcccCCCcccceEEEEcCC---
Confidence            56677777754     468999987755     222222222222 22223 45 66666643     357888875   


Q ss_pred             CcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226          269 ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI  343 (434)
Q Consensus       269 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  343 (434)
                       ...................+.  -++++++.|+.+     ..+.+||+.+..  ......+........++..++.+++
T Consensus       137 -~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v  211 (301)
T 2vpj_A          137 -IDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVALLNDHIYV  211 (301)
T ss_dssp             -TTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEE
T ss_pred             -CCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEEECCEEEE
Confidence             223333333322222222222  256777777654     458888876432  2222222222222234445667777


Q ss_pred             EecCC-----CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-----CeEEEEecCCC
Q 046226          344 SGSAD-----STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-----GVLKMWRVTRP  413 (434)
Q Consensus       344 s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~iw~~~~~  413 (434)
                      .|+.+     ..+.+||+.+. .+..+..+....... +++.. +         +.+++.|+.+     ..|.+||+.+.
T Consensus       212 ~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~-~~~~~-~---------~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          212 VGGFDGTAHLSSVEAYNIRTD-SWTTVTSMTTPRCYV-GATVL-R---------GRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             ECCBCSSSBCCCEEEEETTTT-EEEEECCCSSCCBSC-EEEEE-T---------TEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EeCCCCCcccceEEEEeCCCC-cEEECCCCCCcccce-eEEEE-C---------CEEEEEcCcCCCcccccEEEEcCCCC
Confidence            77764     46899999875 333333222211111 22222 3         6788888766     46788888765


Q ss_pred             Ccc--ccccccccCceeEeee
Q 046226          414 KSS--CGHLNKTNGHEYFELQ  432 (434)
Q Consensus       414 ~~~--~~~~~~~~g~~~~~~~  432 (434)
                      +-.  ........+|....++
T Consensus       280 ~W~~~~~~~~~r~~~~~~~~~  300 (301)
T 2vpj_A          280 SWEVVTSMGTQRCDAGVCVLR  300 (301)
T ss_dssp             EEEEEEEEEEEEESCEEEEEE
T ss_pred             eEEEcCCCCcccccceEEEeC
Confidence            432  2223334455555443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.98  E-value=0.0089  Score=54.78  Aligned_cols=195  Identities=7%  Similarity=-0.046  Sum_probs=110.5

Q ss_pred             EEEEEEc----CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCC-----eEEEeecCCCCC
Q 046226           95 ILCIAVG----NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDG-----KIRVWRSTWDNG  164 (434)
Q Consensus        95 v~~~~~~----~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg-----~i~vwd~~~~~~  164 (434)
                      ...++++    +..|+.+...+.|+.+|..+++...... .......++++++ .|+.+...+     .+...+.... .
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~-~  218 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG-F  218 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT-T
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC-e
Confidence            4577884    3566666555899999987776554433 4456789999886 455554422     1222221111 0


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEccc--CccCeEE
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQA--HSEPINA  241 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~  241 (434)
                      ...             ..+        ........+++++ ++.++++-..++.|+.+|..++.....+..  ....-..
T Consensus       219 ~~~-------------~~~--------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          219 TER-------------LSL--------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFH  277 (433)
T ss_dssp             CCE-------------EEE--------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEE
T ss_pred             ecc-------------ccc--------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCccc
Confidence            000             000        1223456688898 565555555678899999987765222211  1223346


Q ss_pred             EEEcCCC-eEE-EEeCCCeEEEEecccccCcc--eeEEEEEe-----------cccccCeEEEEE---------ecCCCE
Q 046226          242 LVVADDG-VLY-SASDDATVRVWRRYFYSENQ--LHTLILTL-----------TAKYSPVKTLTL---------TLDDGL  297 (434)
Q Consensus       242 ~~~~~~~-~l~-s~~~dg~i~iwd~~~~~~~~--~~~~~~~~-----------~~~~~~v~~~~~---------~~~~~~  297 (434)
                      ++++|++ .|+ +-...+.|+.++........  ........           .........+++         .+++.+
T Consensus       278 ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l  357 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF  357 (433)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred             EEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence            9999998 454 44566889998765211110  01111110           011234667888         667777


Q ss_pred             EEEEcCCCeEEEEEc
Q 046226          298 LYGGCTDGYIHYWHK  312 (434)
Q Consensus       298 l~~~~~dg~i~i~d~  312 (434)
                      +++-...+.|+.++.
T Consensus       358 yvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          358 YFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEEETTTTEEEEECT
T ss_pred             EEEECCCCEEEEECC
Confidence            777677788999885

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.98  E-value=0.023  Score=58.64  Aligned_cols=278  Identities=13%  Similarity=0.159  Sum_probs=142.0

Q ss_pred             cccEEEEEEc--------CCEEEEEeC-CCeEEEecCCCceeEeeccCC-CccEEEEEEe--CC--EEEEEEcCCeEEEe
Q 046226           92 DGQILCIAVG--------NGFIYTGSD-SNVIRIWKQPEFTECGRLKAK-TSMVVAMEVS--HD--RVYAAYGDGKIRVW  157 (434)
Q Consensus        92 ~~~v~~~~~~--------~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~--~~--~l~~~s~dg~i~vw  157 (434)
                      .+.|.|+++.        ++++++|.. |++|+|+++++.+.+....-. .....++.+.  ..  +|+.|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            5679999981        479999996 999999999887665443221 1233444333  22  78889999998777


Q ss_pred             ecCCCC-CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE-EEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226          158 RSTWDN-GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT-LYSASLDKTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       158 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~  235 (434)
                      .++... .....+.                  .+.+ ..++.=..+...+.. +++.+ +....++--+ ++.... ...
T Consensus       633 ~~d~~tg~l~d~r~------------------~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-~l~  690 (1158)
T 3ei3_A          633 GLNIETGLLSDRKK------------------VTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-NVN  690 (1158)
T ss_dssp             EECTTTCCEEEEEE------------------EECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEE-EBS
T ss_pred             EEcCCCCcccccee------------------EEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-ccC
Confidence            654311 1111110                  0112 223433333333332 33333 4444444332 222111 111


Q ss_pred             ccCeEEE-EEc----CCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC------
Q 046226          236 SEPINAL-VVA----DDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD------  304 (434)
Q Consensus       236 ~~~v~~~-~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------  304 (434)
                      ...+..+ .|+    |++++ .. .++.++|..+....  ..  ....+. -...+..++++|+.+.++.++.+      
T Consensus       691 ~~~v~~~~~F~se~~~~g~v-~~-~~~~LrI~~i~~~~--~~--~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~  763 (1158)
T 3ei3_A          691 LKEVNYMCPLNSDGYPDSLA-LA-NNSTLTIGTIDEIQ--KL--HIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDT  763 (1158)
T ss_dssp             SSCCCEEEEECCSSSTTEEE-EE-CSSCEEEEEECCSS--SE--EEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECS
T ss_pred             hHHhceEeccCcccCCCcEE-EE-cCCceEEEEecccC--Ce--eEEEEe-CCCCceEEEEcCCCCEEEEEEEecccccc
Confidence            1233333 343    33333 23 34558888765221  11  122222 23467788888877765554321      


Q ss_pred             -------------------------------------------CeEEEEEcCcccccccccCcccCcccceEEEE---ee
Q 046226          305 -------------------------------------------GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA---SV  338 (434)
Q Consensus       305 -------------------------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~---~~  338 (434)
                                                                 +.|++.|-.+......  ..+... ..+.++.   +.
T Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~--~~l~~n-E~~~sv~~v~~~  840 (1158)
T 3ei3_A          764 SGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHA--HQFLQN-EYALSLVSCKLG  840 (1158)
T ss_dssp             SSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEE--EECCTT-EEEEEEEEECCT
T ss_pred             ccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEE--EeCCCC-cceEEEEEEEEc
Confidence                                                       1244444322221111  112222 2334443   32


Q ss_pred             ---CCEEEEec----------CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeE
Q 046226          339 ---ANYVISGS----------ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVL  405 (434)
Q Consensus       339 ---~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v  405 (434)
                         ..++++|+          ..|.|++|++... +.+.+... ...++|++++-..          |.+|++.  .++|
T Consensus       841 ~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL~lv~~~-~v~g~v~al~~~~----------g~Lla~i--g~~l  906 (1158)
T 3ei3_A          841 KDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KLQTVAEK-EVKGAVYSMVEFN----------GKLLASI--NSTV  906 (1158)
T ss_dssp             TCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT-EEEEEEEE-EESSCEEEEEEET----------TEEEEEE--TTEE
T ss_pred             cCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC-EEEEEEEE-EcCCcCEEEeeeC----------CEEEEEc--CCEE
Confidence               35888876          3588999999843 44444443 3477888887653          4444433  4799


Q ss_pred             EEEecCCCCc
Q 046226          406 KMWRVTRPKS  415 (434)
Q Consensus       406 ~iw~~~~~~~  415 (434)
                      ++|++...+.
T Consensus       907 ~vy~l~~~~~  916 (1158)
T 3ei3_A          907 RLYEWTTEKE  916 (1158)
T ss_dssp             EEEEECTTSC
T ss_pred             EEEECCCCce
Confidence            9999987653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=0.013  Score=53.63  Aligned_cols=148  Identities=5%  Similarity=-0.025  Sum_probs=88.9

Q ss_pred             EEEEEEc---CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcC-C----eEEEeecCCCCC
Q 046226           95 ILCIAVG---NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD-G----KIRVWRSTWDNG  164 (434)
Q Consensus        95 v~~~~~~---~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d-g----~i~vwd~~~~~~  164 (434)
                      ...|+++   +..|+++...+.|+.+|+.++....... .......|+++++  .|+++... +    .+.+.+.. +..
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~  216 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF  216 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence            3566664   4566666655889999987765444333 4456788999986  46666542 1    23323321 111


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEccc-CccCeEEE
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQA-HSEPINAL  242 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~  242 (434)
                      ....             .+        ........++++| ++.++++-..++.|..++...+........ .......+
T Consensus       217 ~~~~-------------~l--------~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gi  275 (430)
T 3tc9_A          217 KVIT-------------EL--------TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHI  275 (430)
T ss_dssp             CSEE-------------EE--------EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEE
T ss_pred             eeee-------------ee--------ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeE
Confidence            1000             00        0123356788999 566566656678999999987654222221 22356789


Q ss_pred             EEcCCC-eE-EEEeCCCeEEEEecc
Q 046226          243 VVADDG-VL-YSASDDATVRVWRRY  265 (434)
Q Consensus       243 ~~~~~~-~l-~s~~~dg~i~iwd~~  265 (434)
                      +++|++ +| ++-...+.|..++..
T Consensus       276 a~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          276 QFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEeCC
Confidence            999999 34 444567889998865

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.89  E-value=0.011  Score=51.75  Aligned_cols=199  Identities=9%  Similarity=-0.017  Sum_probs=118.4

Q ss_pred             CCeEEEEEecCCCEEE-EEecCCcEEEEEcCCCeeE-EEcccCccCeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCc
Q 046226          195 GPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCI-ETIQAHSEPINALVVAD-DG-VLYSASDDATVRVWRRYFYSEN  270 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~  270 (434)
                      ..+..++|.+.+..|+ +-...+.|..+++..+... ..+.........+++.+ ++ ++++-...+.|.++++.   +.
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d---G~  111 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD---GS  111 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---SC
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC---CC
Confidence            3467889998655555 4455678999998765321 12222234566888886 44 55565667889999876   21


Q ss_pred             ceeEEEEEecccccCeEEEEEecCCCEEEEEcC--CCeEEEEEcCcccccccccCcccCcccceEEEEee--CC-EEEEe
Q 046226          271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT--DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--AN-YVISG  345 (434)
Q Consensus       271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~  345 (434)
                      .... +  ..........++++|.+..|+.+..  .+.|..+++.........    ...-.....++++  +. +.++-
T Consensus       112 ~~~~-l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~----~~~l~~Pnglavd~~~~~lY~aD  184 (318)
T 3sov_A          112 LRKV-L--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII----NSEIYWPNGLTLDYEEQKLYWAD  184 (318)
T ss_dssp             SCEE-E--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE----CSSCSCEEEEEEETTTTEEEEEE
T ss_pred             cEEE-E--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE----ECCCCCccEEEEeccCCEEEEEE
Confidence            1111 1  1233456789999997666666553  578888887532211111    1112234667776  44 44455


Q ss_pred             cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          346 SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      +..+.|..+|+..... ..+.  .+.......+++..          +.++++-...+.|..++..+++..
T Consensus       185 ~~~~~I~~~d~dG~~~-~~~~--~~~~~~P~glav~~----------~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          185 AKLNFIHKSNLDGTNR-QAVV--KGSLPHPFALTLFE----------DILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             TTTTEEEEEETTSCSC-EEEE--CSCCSCEEEEEEET----------TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCCEEEEEcCCCCce-EEEe--cCCCCCceEEEEeC----------CEEEEEecCCCeEEEEECCCCCce
Confidence            5678899999875422 2221  22334456677643          456667667788999998777643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.85  E-value=0.00012  Score=71.59  Aligned_cols=238  Identities=13%  Similarity=0.064  Sum_probs=127.7

Q ss_pred             CCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCC---CceeeEeeeccCCCCceeEEE
Q 046226          111 SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDN---GVKHVKLATIPKTGGAVRNLI  184 (434)
Q Consensus       111 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~  184 (434)
                      .+.|+..++.+.+....+.. ...+..|+|++.  .|+.+. ..+.|+.+++....   ....+                
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~----------------  447 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV----------------  447 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB----------------
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE----------------
Confidence            35777888776655444433 234667888863  555554 35778888775410   00000                


Q ss_pred             eccccccCcCCCeEEEEEecCCCEE-EEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CC-CeEE
Q 046226          185 VGKDKMMKHMGPITSIAINVSDDTL-YSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DD-ATVR  260 (434)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~d-g~i~  260 (434)
                           +.........|++.+.+..| ++-...+.|.++++........+.........|++.|.+ .|+.+. .. +.|.
T Consensus       448 -----i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~  522 (699)
T 1n7d_A          448 -----ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIK  522 (699)
T ss_dssp             -----CCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred             -----EeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEE
Confidence                 00111234567777554444 444556889999987554433333333456788998865 444433 22 6787


Q ss_pred             EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEE-EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226          261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLY-GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA  339 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  339 (434)
                      ++++.   +.... .+  ..........|++++++..|+ +-...+.|..+|+....... +. ...........+++++
T Consensus       523 ~~~~d---G~~~~-~l--~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~-~~-~~~~~~~~P~glavd~  594 (699)
T 1n7d_A          523 KGGLN---GVDIY-SL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-IL-EDEKRLAHPFSLAVFE  594 (699)
T ss_dssp             BCCSS---SCCCC-EE--SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE-EC-CCSSSCSSCCCCEEET
T ss_pred             EEeCC---CCCee-EE--EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE-EE-ecCCcCCCceEeEEEC
Confidence            77765   11111 11  111224567899998765554 44567789999986422221 11 1111112234555665


Q ss_pred             C-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226          340 N-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       340 ~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  381 (434)
                      + ++++....+.|..++..++   ..+..+.......+.|++.
T Consensus       595 ~~lywtd~~~~~V~~~d~~~G---~~~~~i~~~~~~P~~i~v~  634 (699)
T 1n7d_A          595 DKVFWTDIINEAIFSANRLTG---SDVNLLAENLLSPEDMVLF  634 (699)
T ss_dssp             TEEEEECSTTTCEEEEETTTE---EEEECCCTTCSSCCCCCBC
T ss_pred             CEEEEEeCCCCeEEEEEccCC---CceEEeecCCCCCcEEEEe
Confidence            5 4555556789999998766   4444443333334455444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.80  E-value=0.0052  Score=53.40  Aligned_cols=188  Identities=7%  Similarity=0.064  Sum_probs=97.3

Q ss_pred             CCCEEEEEecC----CcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCC------CeEEEEecccccCcc
Q 046226          205 SDDTLYSASLD----KTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDD------ATVRVWRRYFYSENQ  271 (434)
Q Consensus       205 ~~~~l~s~~~d----g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~d------g~i~iwd~~~~~~~~  271 (434)
                      ++..++.|+.+    ..+.+||..+.+-  +..+....... +++.. ++ +++.|+.+      ..+.+||+.    ..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~----~~  128 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AACAA-EGKIYTSGGSEVGNSALYLFECYDTR----TE  128 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEEEE-TTEEEEECCBBTTBSCCCCEEEEETT----TT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEEEE-CCEEEEECCCCCCCcEeeeEEEEeCC----CC
Confidence            56677777754    5788999887643  22222222222 22223 44 66667654      458888876    12


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcC---------CCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEE
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYV  342 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  342 (434)
                      .......+.........+.  -++++++.|+.         -..+.+||+.+..  ......+......-.++..++.++
T Consensus       129 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~  204 (306)
T 3ii7_A          129 SWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFVKDKIF  204 (306)
T ss_dssp             EEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEE
T ss_pred             ceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEECCEEE
Confidence            2333322222111222222  25666666653         3458889876442  222222222222223344466677


Q ss_pred             EEecCC-----CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-----CeEEEEecCC
Q 046226          343 ISGSAD-----STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-----GVLKMWRVTR  412 (434)
Q Consensus       343 ~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~iw~~~~  412 (434)
                      +.|+.+     ..+.+||+.+. .+..+..+.........+.+  +         +.+++.||.+     ..+.+||+.+
T Consensus       205 v~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~---------~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          205 AVGGQNGLGGLDNVEYYDIKLN-EWKMVSPMPWKGVTVKCAAV--G---------SIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             EECCEETTEEBCCEEEEETTTT-EEEECCCCSCCBSCCEEEEE--T---------TEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             EEeCCCCCCCCceEEEeeCCCC-cEEECCCCCCCccceeEEEE--C---------CEEEEEeCcCCCeeeeeEEEEcCCC
Confidence            777754     36889998875 33333333222222222222  3         6788888854     5688899887


Q ss_pred             CC
Q 046226          413 PK  414 (434)
Q Consensus       413 ~~  414 (434)
                      .+
T Consensus       273 ~~  274 (306)
T 3ii7_A          273 DK  274 (306)
T ss_dssp             TE
T ss_pred             Ce
Confidence            64

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.79  E-value=0.0055  Score=53.15  Aligned_cols=145  Identities=12%  Similarity=0.157  Sum_probs=73.9

Q ss_pred             CCCEEEEEecCC-----cEEEEEcCCCeeEE--EcccCccCeEEEEEcCCC-eEEEEeCC-------CeEEEEecccccC
Q 046226          205 SDDTLYSASLDK-----TIKVWRIRDSKCIE--TIQAHSEPINALVVADDG-VLYSASDD-------ATVRVWRRYFYSE  269 (434)
Q Consensus       205 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~s~~~d-------g~i~iwd~~~~~~  269 (434)
                      ++..++.|+.++     .+.+||+.+.+-..  .+...... .+++.. ++ +++.|+.+       ..+.+||+.    
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~----  181 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVV-GGLLYAVGGYDVASRQCLSTVECYNAT----  181 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTTTEECCCEEEEETT----
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCC----
Confidence            566777776553     57788887764322  22211112 223333 44 55555542       347888876    


Q ss_pred             cceeEEEEEecccccCeEEEEEecCCCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEE
Q 046226          270 NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVIS  344 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s  344 (434)
                      .........+....... +++. -++.+++.|+.+     ..+.+||+....  ......+........++..++.+++.
T Consensus       182 ~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~i~v~  257 (302)
T 2xn4_A          182 TNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNA--WRQVADMNMCRRNAGVCAVNGLLYVV  257 (302)
T ss_dssp             TTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred             CCcEEECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCC--EeeCCCCCCccccCeEEEECCEEEEE
Confidence            12233332222221222 2222 256777777654     368899986432  22222222111122334456777778


Q ss_pred             ecCCC-----cEEEEeccCC
Q 046226          345 GSADS-----TSRVWAREQD  359 (434)
Q Consensus       345 ~~~dg-----~i~iwd~~~~  359 (434)
                      |+.++     .+.+||+.+.
T Consensus       258 GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          258 GGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             CCBCSSSBCCCEEEEETTTT
T ss_pred             CCcCCCcccccEEEEcCCCC
Confidence            87654     4888988875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.79  E-value=0.0085  Score=51.92  Aligned_cols=206  Identities=10%  Similarity=0.057  Sum_probs=102.3

Q ss_pred             CCCEEEEEecC-----CcEEEEEcCCCeeE--EEcccCccCeEEEEEcCCCeEEEEeCCC-----eEEEEecccccCcce
Q 046226          205 SDDTLYSASLD-----KTIKVWRIRDSKCI--ETIQAHSEPINALVVADDGVLYSASDDA-----TVRVWRRYFYSENQL  272 (434)
Q Consensus       205 ~~~~l~s~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~  272 (434)
                      ++..++.|+.+     ..+.+||..+.+-.  ..+...... .+++...+..++.|+.++     .+.+||+.    ...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~----~~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAVLNGLLYAVGGFDGSTGLSSVEAYNIK----SNE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEEEEECSSCEEEEEEEEETT----TTE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEEECCEEEEEcCCCCCccCceEEEEeCC----CCe
Confidence            56677777654     35889998776522  222221122 223333233666666543     46677765    222


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEEEcCC-------CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-------GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG  345 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~  345 (434)
                      ......+....... +++. -++++++.|+.+       ..+.+||+....  ......+........++..++.+++.|
T Consensus       136 W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~G  211 (302)
T 2xn4_A          136 WFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVLNNLLYAVG  211 (302)
T ss_dssp             EEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred             EeecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEECCEEEEEC
Confidence            33332222221222 2222 256666666542       358889876432  222122222222223445567777787


Q ss_pred             cCCC-----cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC-----eEEEEecCCCCc
Q 046226          346 SADS-----TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG-----VLKMWRVTRPKS  415 (434)
Q Consensus       346 ~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-----~v~iw~~~~~~~  415 (434)
                      +.++     .+.+||+.+. .+..+..+......- +++. .+         +.+++.||.++     .|.+||+.+.+-
T Consensus       212 G~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~-~~~~-~~---------~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          212 GHDGPLVRKSVEVYDPTTN-AWRQVADMNMCRRNA-GVCA-VN---------GLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             CBSSSSBCCCEEEEETTTT-EEEEECCCSSCCBSC-EEEE-ET---------TEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCCCCcccceEEEEeCCCC-CEeeCCCCCCccccC-eEEE-EC---------CEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            7653     6889998875 333333222111111 1222 23         67888888664     488999887643


Q ss_pred             cc---cccccccCceeEee
Q 046226          416 SC---GHLNKTNGHEYFEL  431 (434)
Q Consensus       416 ~~---~~~~~~~g~~~~~~  431 (434)
                      ..   ........|....+
T Consensus       280 ~~~~~~~~~~r~~~~~~~~  298 (302)
T 2xn4_A          280 TVVSSCMSTGRSYAGVTVI  298 (302)
T ss_dssp             EECSSCCSSCCBSCEEEEE
T ss_pred             EECCcccCcccccceEEEe
Confidence            21   12233345555544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.77  E-value=0.0072  Score=52.58  Aligned_cols=145  Identities=8%  Similarity=0.089  Sum_probs=74.2

Q ss_pred             CCCEEEEEecC-----CcEEEEEcCCCeeEE--EcccCccCeEEEEEcCCC-eEEEEeCC-----CeEEEEecccccCcc
Q 046226          205 SDDTLYSASLD-----KTIKVWRIRDSKCIE--TIQAHSEPINALVVADDG-VLYSASDD-----ATVRVWRRYFYSENQ  271 (434)
Q Consensus       205 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~s~~~d-----g~i~iwd~~~~~~~~  271 (434)
                      +++.++.|+.+     ..+.+||..+.+-..  .+......- +++.. ++ +++.|+.+     ..+.+||+.    ..
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~----~~  194 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL-NRLLYAVGGFDGTNRLNSAECYYPE----RN  194 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCCEEEEETT----TT
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE-CCEEEEEeCCCCCCcCceEEEEeCC----CC
Confidence            56666776643     468899987764322  222111222 22233 44 66666654     457888875    12


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEec
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGS  346 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~  346 (434)
                      .......+.........+.+  ++.+++.|+.+     ..+.+||+...  .......+........++..++.+++.|+
T Consensus       195 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  270 (308)
T 1zgk_A          195 EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGITVHQGRIYVLGG  270 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred             eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCCCCCccceEEEEECCEEEEEcC
Confidence            22222222221122222222  56777777654     56889998643  22222222222222233445677777777


Q ss_pred             CC-----CcEEEEeccCC
Q 046226          347 AD-----STSRVWAREQD  359 (434)
Q Consensus       347 ~d-----g~i~iwd~~~~  359 (434)
                      .+     ..+.+||+.+.
T Consensus       271 ~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          271 YDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             BCSSCBCCEEEEEETTTT
T ss_pred             cCCCcccceEEEEcCCCC
Confidence            54     35788888765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.76  E-value=0.025  Score=52.24  Aligned_cols=248  Identities=9%  Similarity=0.046  Sum_probs=134.2

Q ss_pred             EEEEEEeC-C--EEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE-------e
Q 046226          135 VVAMEVSH-D--RVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI-------N  203 (434)
Q Consensus       135 v~~l~~~~-~--~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~  203 (434)
                      ...|+|+| +  .|+++.. .+.|++.|+..+........   .                .........++|       +
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~---~----------------~~~~~~p~~ia~~~~~~~~d  201 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI---N----------------TIPTNRIRSIAFNKKIEGYA  201 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC---T----------------TSSCSBEEEEEECCCBTTTB
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc---C----------------ccccCCCcEEEEeecccccC
Confidence            56889997 2  5666554 36677777664432221110   0                012345889999       9


Q ss_pred             cCCCEEEEEecCC-------cEEEEEcCC-CeeE-----EEcccCccCeEEEEEcCC-C-eEEEEeCCCeEEEEeccc--
Q 046226          204 VSDDTLYSASLDK-------TIKVWRIRD-SKCI-----ETIQAHSEPINALVVADD-G-VLYSASDDATVRVWRRYF--  266 (434)
Q Consensus       204 ~~~~~l~s~~~dg-------~i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~-~l~s~~~dg~i~iwd~~~--  266 (434)
                      +++++|+++...+       .|.+++... +...     ..+.. -.....++++|+ + ++++-..++.|..+|+..  
T Consensus       202 ~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~  280 (496)
T 3kya_A          202 DEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYF  280 (496)
T ss_dssp             CTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHH
T ss_pred             CCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEeccccc
Confidence            9999777776554       266665433 2221     12221 123457788984 4 566666788899999861  


Q ss_pred             -----ccC-----cc---eeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccc----cccCc--cc
Q 046226          267 -----YSE-----NQ---LHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQL----QYGGA--LQ  326 (434)
Q Consensus       267 -----~~~-----~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~----~~~~~--~~  326 (434)
                           ...     ..   ....+... ........++|+|+|++|+.+ +....|+.++........    .+...  ..
T Consensus       281 ~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~  359 (496)
T 3kya_A          281 KTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS  359 (496)
T ss_dssp             HHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred             ccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence                 111     00   01122222 223456789999999965554 567789987654322110    01000  00


Q ss_pred             Cc---------ccceE-EEEe---------eCCEEEEecCCCcEEEEeccCCCceeeEEEeecc----------------
Q 046226          327 GH---------THAVM-CLAS---------VANYVISGSADSTSRVWAREQDGRHTMLAVLVGH----------------  371 (434)
Q Consensus       327 ~~---------~~~v~-~~~~---------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h----------------  371 (434)
                      +.         -.... .+..         .++++++-..++.|+.++. ++ .   +.++.+.                
T Consensus       360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~---v~TiaG~g~~~~~~~~~~~G~~d  434 (496)
T 3kya_A          360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-I---VSTYAGRGASTSLADGNQWGTDD  434 (496)
T ss_dssp             CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-B---EEEEEESCTTHHHHHSCSCCCCC
T ss_pred             cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-C---EEEEecccccccccCccccccCC
Confidence            10         01122 2333         2456666667788999983 33 1   2222221                


Q ss_pred             --------ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          372 --------RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       372 --------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                              -.....|++.++.        +.++++=.....|+.++++.....
T Consensus       435 G~~~~~a~f~~P~gIavd~~~--------g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          435 GDLREVARFRDVSGLVYDDVK--------EMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             EETTTTCCCSSEEEEEEETTT--------TEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCchhhhhcCCCcEEEEECCC--------CEEEEEeCCCCEEEEEECCCCccc
Confidence                    1134567777642        556666667788999998866544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.68  E-value=0.014  Score=50.44  Aligned_cols=161  Identities=7%  Similarity=0.089  Sum_probs=100.9

Q ss_pred             cEEEEEEc--CCEEEEEe-CCCeEEEecCCCceeEe-eccC----C--CccEEEEEE---eCC-EEEEEEc---------
Q 046226           94 QILCIAVG--NGFIYTGS-DSNVIRIWKQPEFTECG-RLKA----K--TSMVVAMEV---SHD-RVYAAYG---------  150 (434)
Q Consensus        94 ~v~~~~~~--~~~l~tg~-~dg~i~iwd~~~~~~~~-~~~~----~--~~~v~~l~~---~~~-~l~~~s~---------  150 (434)
                      .--+++|+  ...|+.++ ..++|..||...+.... .+..    .  ...+..|.+   .++ +|+++..         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            34467783  35555555 78999999987553322 2322    1  114688999   465 5555433         


Q ss_pred             -----CCeEEEeecC---CCCCceeeEeeeccCCCCceeEEEeccccccC-cCCCeEEEEEecCCCEEEEEecC-CcEEE
Q 046226          151 -----DGKIRVWRST---WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK-HMGPITSIAINVSDDTLYSASLD-KTIKV  220 (434)
Q Consensus       151 -----dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d-g~i~v  220 (434)
                           +..|..+|+.   +++.+....+......          .....+ -.....+++..++|+..++++.. +.|..
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~----------~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r  163 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE----------FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR  163 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH----------HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCcccccc----------ccccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence                 5778889988   6666655543211000          000000 11347899999999999999888 88888


Q ss_pred             EEcCCCeeEEEcc------cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226          221 WRIRDSKCIETIQ------AHSEPINALVVADDG-VLYSASDDATVRVWRRY  265 (434)
Q Consensus       221 wd~~~~~~~~~~~------~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~  265 (434)
                      .+.... .+..+.      ......+.|++.|++ .|++....|.|..+|+.
T Consensus       164 V~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          164 VSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             ECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            887543 333221      112346799999999 67666669999999987

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.65  E-value=0.00062  Score=66.57  Aligned_cols=200  Identities=10%  Similarity=-0.038  Sum_probs=110.7

Q ss_pred             CCeEEEEEecCCCEEEEEe-cCCcEEEEEcCC----CeeEEEcccCccCeEEEEEcCC-C-eEEEEeCCCeEEEEecccc
Q 046226          195 GPITSIAINVSDDTLYSAS-LDKTIKVWRIRD----SKCIETIQAHSEPINALVVADD-G-VLYSASDDATVRVWRRYFY  267 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~-~l~s~~~dg~i~iwd~~~~  267 (434)
                      ..+..|+|.+.+..|+.+. ..+.|+.+++..    ......+.........|++.+. + ++++-...+.|.++++.  
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d--  483 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--  483 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS--
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC--
Confidence            4567889998777776654 457899999875    2222222222233456777743 4 55555567889999876  


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC--CCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEE
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT--DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYV  342 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l  342 (434)
                       .....   ............|+++|.+.+|+.+..  .+.|..+++..........    ........|+++   +.++
T Consensus       484 -g~~~~---~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~----~~l~~PnGlavd~~~~~LY  555 (699)
T 1n7d_A          484 -GVKRK---TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT----ENIQWPNGITLDLLSGRLY  555 (699)
T ss_dssp             -SCCEE---EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC----SSCSSCCCEEECTTTCCEE
T ss_pred             -CCceE---EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe----CCCCCccEEEEeccCCEEE
Confidence             11111   112222345678899997666555543  2678887765322211110    111233456665   3455


Q ss_pred             EEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          343 ISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       343 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ++-...+.|..+++..... ..+............|++..          +.++++....+.|..++..+++.
T Consensus       556 ~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~----------~~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          556 WVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE----------DKVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             EEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEET----------TEEEEECSTTTCEEEEETTTEEE
T ss_pred             EEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEEC----------CEEEEEeCCCCeEEEEEccCCCc
Confidence            6666678899999875322 22211111112233455543          34666667778899998766554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.65  E-value=0.0048  Score=54.98  Aligned_cols=141  Identities=11%  Similarity=0.009  Sum_probs=64.0

Q ss_pred             CcEEEEEcCCCe--eEEEcccCccCeEEEEEcCCCeEEEEeC------CCeEEEEecccccCcceeEEEEEecccccCeE
Q 046226          216 KTIKVWRIRDSK--CIETIQAHSEPINALVVADDGVLYSASD------DATVRVWRRYFYSENQLHTLILTLTAKYSPVK  287 (434)
Q Consensus       216 g~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  287 (434)
                      ..+.+||..+.+  .+..+......-.+++...+.+++.|+.      ...+.+||+.  ........+..+........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d--~~~~~W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFT--GNNLKWNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC-----CEEEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEec--CCCCcEEecCCCCCCccccc
Confidence            578899988764  2333321111113344443335666653      2346667652  11122332222211111111


Q ss_pred             EEEEecCCCEEEEEcCC----------------------CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe
Q 046226          288 TLTLTLDDGLLYGGCTD----------------------GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG  345 (434)
Q Consensus       288 ~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~  345 (434)
                      ..+...++.+++.|+.+                      ..+.+||+...  .......+......-.++..++++++.|
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~G  323 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG--KWDKSGELSQGRAYGVSLPWNNSLLIIG  323 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBSSEEEEETTEEEEEE
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC--ceeeCCCCCCCcccceeEEeCCEEEEEe
Confidence            11223356677777632                      25778887643  2222222222222223455677788888


Q ss_pred             cCCC------cEEEEeccCCC
Q 046226          346 SADS------TSRVWAREQDG  360 (434)
Q Consensus       346 ~~dg------~i~iwd~~~~~  360 (434)
                      +.++      .|.++++++++
T Consensus       324 G~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          324 GETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             EECGGGCEEEEEEEEEC-CCS
T ss_pred             eeCCCCCEeeeEEEEEEcCcE
Confidence            8653      35566777663

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.61  E-value=0.022  Score=49.70  Aligned_cols=189  Identities=10%  Similarity=0.043  Sum_probs=94.1

Q ss_pred             cCCCEEEEEec----C-------CcEEEEEcCCCeeEE--EcccCccCeEEEEEcCCC-eEEEEeCC--------CeEEE
Q 046226          204 VSDDTLYSASL----D-------KTIKVWRIRDSKCIE--TIQAHSEPINALVVADDG-VLYSASDD--------ATVRV  261 (434)
Q Consensus       204 ~~~~~l~s~~~----d-------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~s~~~d--------g~i~i  261 (434)
                      .++..++.|+.    +       ..+.+||..+.+-..  .+...... .+++.. ++ .++.|+.+        ..+.+
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGEA-LNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEEE-TTEEEEECCEESSTTCCBCCCEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEEE-CCEEEEEeCCcCCCCCcccceEEE
Confidence            46777777773    1       127788887765321  12111111 122333 44 56666632        45788


Q ss_pred             EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC------CCeEEEEEcCcccccccccCcccCcccceEEE
Q 046226          262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL  335 (434)
Q Consensus       262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  335 (434)
                      ||+..    ........+....... +++. -++++++.|+.      -..+.+||+.+.  .......+......-.+.
T Consensus       122 ~d~~~----~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~  193 (315)
T 4asc_A          122 YDRLS----FKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGAT  193 (315)
T ss_dssp             EETTT----TEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEE
T ss_pred             ECCCC----CcEeECCCCCCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEE
Confidence            88761    1222222222211111 2222 35666777765      246888987643  222222222222222344


Q ss_pred             EeeCCEEEEecCCC-----cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC-------
Q 046226          336 ASVANYVISGSADS-----TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG-------  403 (434)
Q Consensus       336 ~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-------  403 (434)
                      ..++.+++.|+.++     .+.+||+.+. .+..+..+....... +++.. +         +.+++.||.++       
T Consensus       194 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~-~~~~~-~---------~~l~v~GG~~~~~~~~~~  261 (315)
T 4asc_A          194 VHDGRIIVAAGVTDTGLTSSAEVYSITDN-KWAPFEAFPQERSSL-SLVSL-V---------GTLYAIGGFATLETESGE  261 (315)
T ss_dssp             EETTEEEEEEEECSSSEEEEEEEEETTTT-EEEEECCCSSCCBSC-EEEEE-T---------TEEEEEEEEEEEECTTSC
T ss_pred             EECCEEEEEeccCCCCccceEEEEECCCC-eEEECCCCCCcccce-eEEEE-C---------CEEEEECCccccCcCCcc
Confidence            55677777777654     5888998875 334433322211111 22222 3         66788887643       


Q ss_pred             -------eEEEEecCCCC
Q 046226          404 -------VLKMWRVTRPK  414 (434)
Q Consensus       404 -------~v~iw~~~~~~  414 (434)
                             .|.+||+.+.+
T Consensus       262 ~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          262 LVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEEEEEEEEEETTTTE
T ss_pred             ccccccCcEEEecCCCCh
Confidence                   36778887664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.49  E-value=0.048  Score=48.35  Aligned_cols=235  Identities=12%  Similarity=0.050  Sum_probs=116.6

Q ss_pred             cEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---CCEE
Q 046226          134 MVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---DDTL  209 (434)
Q Consensus       134 ~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l  209 (434)
                      .-..++|.|+ .++++..+|.|.+++  .++ ...+  ...+              ...........|+|+|+   +..|
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~-~~~~--~~~~--------------v~~~g~~~p~gia~~pdf~~~g~l   92 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGR-LSTY--AELS--------------VYHRGESGLLGLALHPRFPQEPYV   92 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTE-EEEE--EECC--------------CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCC-ccEe--ecce--------------EeecCCCCceeEEECCCCCCCCEE
Confidence            4678999997 677778889999987  221 1111  1100              00123456789999998   6666


Q ss_pred             EEEecC------CcEEEEEcCCCe-----e-EEEcc---cCccCeEEEEEcCCCeEEEE-eC-------------CCeEE
Q 046226          210 YSASLD------KTIKVWRIRDSK-----C-IETIQ---AHSEPINALVVADDGVLYSA-SD-------------DATVR  260 (434)
Q Consensus       210 ~s~~~d------g~i~vwd~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~l~s~-~~-------------dg~i~  260 (434)
                      +++...      +.|..++...+.     . +..+.   ........++|.|+|.|+.+ +.             .|.|.
T Consensus        93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~  172 (352)
T 2ism_A           93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKIL  172 (352)
T ss_dssp             EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEE
T ss_pred             EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEE
Confidence            655432      678888876431     1 12232   11123468999999944433 22             14555


Q ss_pred             EEeccccc--Cc-------ceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCe--------EEEEEcCcccc-----
Q 046226          261 VWRRYFYS--EN-------QLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGY--------IHYWHKGWFSA-----  317 (434)
Q Consensus       261 iwd~~~~~--~~-------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~--------i~i~d~~~~~~-----  317 (434)
                      -+|....-  ..       ..... .. .++ .....++|+| ++.++++-.....        |.+..-.....     
T Consensus       173 ri~~dG~~p~~npf~~~~~~~~~i-~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~  249 (352)
T 2ism_A          173 RLTPEGEPAPGNPFLGRRGARPEV-YS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV  249 (352)
T ss_dssp             EECTTSSBCTTCTTTTCTTSCTTE-EE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred             EEcCCCCCCCCCcccCCCCCCccE-EE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence            55543100  00       00011 11 111 2356789999 5555444332222        33332111000     


Q ss_pred             ----c---ccccCcccCcccceEEEEe-eCCEEEEecCCCcEEEEeccCCCce---eeEEEeeccccceeEEEEeecccC
Q 046226          318 ----Q---LQYGGALQGHTHAVMCLAS-VANYVISGSADSTSRVWAREQDGRH---TMLAVLVGHRGPIRCAIAFLGRFG  386 (434)
Q Consensus       318 ----~---~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~  386 (434)
                          .   ......+..| .....+++ .|+++++.-..+.|...+++.....   .....+..-...+..+++.|+   
T Consensus       250 g~~~~~~~~~p~~~~~~~-~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd---  325 (352)
T 2ism_A          250 GRGNDPRYRDPLYFWPQG-FPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPD---  325 (352)
T ss_dssp             SCCCCTTSCCCSEECTTC-CCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTT---
T ss_pred             CCCCCCCCcCCeEecCCC-CCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCC---
Confidence                0   0001111122 23445555 4556666666677888877654310   111222122356788888888   


Q ss_pred             CCCCCcccEEEEee
Q 046226          387 EETEDEYCTICTGS  400 (434)
Q Consensus       387 ~~~~~~~~~l~s~~  400 (434)
                            |.+.++..
T Consensus       326 ------G~lyv~~~  333 (352)
T 2ism_A          326 ------GALYVTTS  333 (352)
T ss_dssp             ------SCEEEEEC
T ss_pred             ------CcEEEEEe
Confidence                  66555543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.47  E-value=0.03  Score=48.56  Aligned_cols=188  Identities=11%  Similarity=0.076  Sum_probs=94.7

Q ss_pred             CCCEEEEEec----C-----CcEEEEEcCCCeeEE--EcccCccCeEEEEEcCCC-eEEEEeCC-----CeEEEEecccc
Q 046226          205 SDDTLYSASL----D-----KTIKVWRIRDSKCIE--TIQAHSEPINALVVADDG-VLYSASDD-----ATVRVWRRYFY  267 (434)
Q Consensus       205 ~~~~l~s~~~----d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~s~~~d-----g~i~iwd~~~~  267 (434)
                      ++.+++.|+.    +     ..+.+||..+.+-..  .+....... +++.. ++ +++.|+.+     ..+.+||+.. 
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~-  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI-DGHIYAVGGSHGCIHHNSVERYEPER-  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE-TTEEEEECCEETTEECCCEEEEETTT-
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE-CCEEEEEcCCCCCcccccEEEECCCC-
Confidence            5666666665    2     468899987764222  122111222 22223 44 56666533     3577888751 


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEE
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYV  342 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  342 (434)
                         ........+.........+.+  ++.+++.|+.+     ..+.+||+....  ......+......-.++..++.++
T Consensus       147 ---~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iy  219 (308)
T 1zgk_A          147 ---DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVLHNCIY  219 (308)
T ss_dssp             ---TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEE
T ss_pred             ---CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEECCEEE
Confidence               222222222221122222222  56677777654     458889876432  222222222222223444566777


Q ss_pred             EEecCC-----CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-----CeEEEEecCC
Q 046226          343 ISGSAD-----STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-----GVLKMWRVTR  412 (434)
Q Consensus       343 ~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~iw~~~~  412 (434)
                      +.|+.+     ..+.+||+.+. .+..+..+....... +++.. +         +.+++.||.+     ..|.+||+.+
T Consensus       220 v~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~-~~~~~-~---------~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          220 AAGGYDGQDQLNSVERYDVETE-TWTFVAPMKHRRSAL-GITVH-Q---------GRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             EECCBCSSSBCCCEEEEETTTT-EEEECCCCSSCCBSC-EEEEE-T---------TEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             EEeCCCCCCccceEEEEeCCCC-cEEECCCCCCCccce-EEEEE-C---------CEEEEEcCcCCCcccceEEEEcCCC
Confidence            777765     46899999875 333333222211111 22222 3         6778888754     4578888876


Q ss_pred             CC
Q 046226          413 PK  414 (434)
Q Consensus       413 ~~  414 (434)
                      .+
T Consensus       288 ~~  289 (308)
T 1zgk_A          288 DT  289 (308)
T ss_dssp             TE
T ss_pred             CE
Confidence            54

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.47  E-value=0.087  Score=50.72  Aligned_cols=221  Identities=11%  Similarity=0.005  Sum_probs=131.3

Q ss_pred             EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCe
Q 046226          149 YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSK  227 (434)
Q Consensus       149 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~  227 (434)
                      +....|+..++........+.+                     ..-..+..|+|++.+..|+.+ ..++.|..+++....
T Consensus        12 s~~~~I~~i~l~~~~~~~~~~~---------------------~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~   70 (628)
T 4a0p_A           12 SRRADIRRISLETNNNNVAIPL---------------------TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA   70 (628)
T ss_dssp             EETTEEEEEESSCTTCEEECCC---------------------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EeCCcEEEEECCCCCcceEEEc---------------------CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC
Confidence            3567788888875432221110                     133467899999877666654 457889999987554


Q ss_pred             eEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC--
Q 046226          228 CIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT--  303 (434)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--  303 (434)
                      ....+.........|++...+  ++++-...+.|.+.++.   +.......   .........|+++|....|+....  
T Consensus        71 ~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d---G~~~~~l~---~~~l~~P~~iavdp~~G~lY~tD~g~  144 (628)
T 4a0p_A           71 LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD---GQHRQVLV---WKDLDSPRALALDPAEGFMYWTEWGG  144 (628)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---STTCEEEE---CSSCCCEEEEEEETTTTEEEEEECSS
T ss_pred             cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC---CCcEEEEE---eCCCCCcccEEEccCCCeEEEeCCCC
Confidence            333333233456788887654  55565667889999876   22211111   123346789999996666665542  


Q ss_pred             CCeEEEEEcCcccccccccCcccCcccceEEEEee--CC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEE
Q 046226          304 DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--AN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIA  380 (434)
Q Consensus       304 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  380 (434)
                      .+.|...++.........     ..-.....++++  ++ +.++-...+.|..+|+..... +.+   ...-.....+++
T Consensus       145 ~~~I~r~~~dG~~~~~l~-----~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~---~~~l~~P~glav  215 (628)
T 4a0p_A          145 KPKIDRAAMDGSERTTLV-----PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI---ADDLPHPFGLTQ  215 (628)
T ss_dssp             SCEEEEEETTSCSCEEEE-----CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE---EECCSCEEEEEE
T ss_pred             CCEEEEEeCCCCceEEEE-----CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe---eccCCCceEEEE
Confidence            567888877543322111     122345677776  44 444445677899999876433 222   222333456776


Q ss_pred             eecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          381 FLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       381 ~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ..          +.++++-...+.|...|..+++.
T Consensus       216 ~~----------~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          216 YQ----------DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             ET----------TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EC----------CEEEEecCCCCEEEEEECCCCCc
Confidence            53          34555555678888888766654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.46  E-value=0.089  Score=50.65  Aligned_cols=222  Identities=12%  Similarity=0.070  Sum_probs=132.0

Q ss_pred             EEEEEeCCCeEEEecCCCceeEeecc-CCCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          104 FIYTGSDSNVIRIWKQPEFTECGRLK-AKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       104 ~l~tg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      +|+.+ ..+.|+..++.+......+. ..-..+..|+|++.  .++.+. .++.|..+++........+.          
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~----------   76 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE----------   76 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe----------
Confidence            34443 45678888887654333322 12346789999974  555554 47888888876432211110          


Q ss_pred             eeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC-CeEEEEe--C
Q 046226          180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-GVLYSAS--D  255 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~s~~--~  255 (434)
                                  ........+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|. +.|+...  .
T Consensus        77 ------------~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~  144 (628)
T 4a0p_A           77 ------------FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG  144 (628)
T ss_dssp             ------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS
T ss_pred             ------------CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC
Confidence                        122346788888766655544 45678999998654322222234456789999984 5555444  3


Q ss_pred             CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCcccCcccceEE
Q 046226          256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC  334 (434)
Q Consensus       256 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  334 (434)
                      .+.|...++.   +.......    ........|+++++++.|+.+ ...+.|..+|+......  .   +........+
T Consensus       145 ~~~I~r~~~d---G~~~~~l~----~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~--v---~~~~l~~P~g  212 (628)
T 4a0p_A          145 KPKIDRAAMD---GSERTTLV----PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE--V---IADDLPHPFG  212 (628)
T ss_dssp             SCEEEEEETT---SCSCEEEE----CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--E---EEECCSCEEE
T ss_pred             CCEEEEEeCC---CCceEEEE----CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE--E---eeccCCCceE
Confidence            5677777765   22222221    234567899999977666665 45678999998653321  1   1112223457


Q ss_pred             EEeeCCEEE-EecCCCcEEEEeccCCC
Q 046226          335 LASVANYVI-SGSADSTSRVWAREQDG  360 (434)
Q Consensus       335 ~~~~~~~l~-s~~~dg~i~iwd~~~~~  360 (434)
                      +++.++.|+ +-...+.|...|..++.
T Consensus       213 lav~~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          213 LTQYQDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEECCEEEEecCCCCEEEEEECCCCC
Confidence            777766554 44457888888876664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.44  E-value=0.06  Score=48.21  Aligned_cols=210  Identities=9%  Similarity=0.065  Sum_probs=128.8

Q ss_pred             EEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226          199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       199 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  278 (434)
                      +.-.+|..+.++.-. ..++.++|+++.+.+..+.-. ..|.-=.|-.+..|+..+ +..|..|++..   ......+..
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~lVT-~taVyHWsi~~---~s~P~kvFd  143 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEG---ESQPVKMFD  143 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEEEC-SSEEEEEESSS---SCCCEEEEE
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEEEc-CCeeEEecccC---CCCchhhee
Confidence            344567777666554 678999999999888877643 456666776666555443 35799999862   112222222


Q ss_pred             e--cccccCeEEEEEecCCCEEEEEc-------CCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-----EEEE
Q 046226          279 L--TAKYSPVKTLTLTLDDGLLYGGC-------TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-----YVIS  344 (434)
Q Consensus       279 ~--~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~s  344 (434)
                      .  .-....|.....+++.++++..+       -.|.+.+|..+..     ..+.+.||...-..+..+|+     .++.
T Consensus       144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f  218 (494)
T 1bpo_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCF  218 (494)
T ss_dssp             CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CEEEECCSEEEEEEEECTTCSSEEEEEEE
T ss_pred             cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-----ccchheeeeeeeEEEecCCCCCCceEEEE
Confidence            1  11234566777788888876543       2578889986422     22356688776666666554     4444


Q ss_pred             ecC---CCcEEEEeccCC---Cce---eeEEEee---ccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          345 GSA---DSTSRVWAREQD---GRH---TMLAVLV---GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       345 ~~~---dg~i~iwd~~~~---~~~---~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      +..   .+.++|-++...   ...   +.+..+-   .-.+-..++..++.         ...+..-..-|.|+++|+++
T Consensus       219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k---------ygviyviTK~G~i~lyDleT  289 (494)
T 1bpo_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK---------HDVVFLITKYGYIHLYDLET  289 (494)
T ss_dssp             EECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT---------TTEEEEEETTSEEEEEETTT
T ss_pred             EEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc---------CCEEEEEecCceEEEEeccc
Confidence            443   278999998643   100   1111111   11333456777776         67888889999999999999


Q ss_pred             CCccccccccccCceeEe
Q 046226          413 PKSSCGHLNKTNGHEYFE  430 (434)
Q Consensus       413 ~~~~~~~~~~~~g~~~~~  430 (434)
                      +..+.  .++.++...|.
T Consensus       290 gt~i~--~nrIs~~~iF~  305 (494)
T 1bpo_A          290 GTCIY--MNRISGETIFV  305 (494)
T ss_dssp             CCEEE--EEECCSSCEEE
T ss_pred             ceeee--eecccCCceEE
Confidence            98664  33444444443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.38  E-value=0.07  Score=47.77  Aligned_cols=260  Identities=10%  Similarity=0.042  Sum_probs=152.3

Q ss_pred             CCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226          110 DSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD  188 (434)
Q Consensus       110 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
                      .+..|.|.|+.+...+.+..-.   .-+.-.+|. .+++--...++.++|+++...++...                   
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~-------------------  103 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT-------------------  103 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEE-------------------
T ss_pred             CCCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEecCCeEEEEchHHhhhhccee-------------------
Confidence            3448888898875544321111   112234554 23333347899999999887776664                   


Q ss_pred             cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC-CeeEEEcccCc----cCeEEEEEcCCC--eEEEEe------C
Q 046226          189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD-SKCIETIQAHS----EPINALVVADDG--VLYSAS------D  255 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~--~l~s~~------~  255 (434)
                          ....|.-=.|-. .+.|+-.+ +..|+-|+++. ..+++.+..|.    ..|..-..+++.  .+++|-      -
T Consensus       104 ----~~e~VvfWkWis-~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v  177 (494)
T 1bpo_A          104 ----MTDDVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV  177 (494)
T ss_dssp             ----CSSCCCEEEEEE-TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEE
T ss_pred             ----cCCCceEEEecC-CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcc
Confidence                334455556653 44555555 56799999964 35666666553    356666777777  333332      2


Q ss_pred             CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC---CEEEEEcC---CCeEEEEEcCcc-cccccc-------
Q 046226          256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD---GLLYGGCT---DGYIHYWHKGWF-SAQLQY-------  321 (434)
Q Consensus       256 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~i~d~~~~-~~~~~~-------  321 (434)
                      .|.+.+|...       ......+.+|......+.+..+.   ..+..+..   .++++|.++... .....+       
T Consensus       178 ~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv  250 (494)
T 1bpo_A          178 VGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV  250 (494)
T ss_dssp             EEEEEEEEST-------TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEEC
T ss_pred             cceEEEeecc-------ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeee
Confidence            4677888765       22233445554444333332111   13333332   379999998643 111111       


Q ss_pred             cCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226          322 GGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       322 ~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                      ........+-..++..+.+  .+..-+.-|.|++||++++   .++..-+-..+.|...+-...         ..=++..
T Consensus       251 ~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs~~~iF~t~~~~~---------~~Gi~~V  318 (494)
T 1bpo_A          251 FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGETIFVTAPHEA---------TAGIIGV  318 (494)
T ss_dssp             CCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEETT---------TTEEEEE
T ss_pred             eCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeecccCCceEEecccCC---------CCcEEEE
Confidence            1111122334456666654  6777888999999999998   777777667777766555444         3345555


Q ss_pred             ecCCeEEEEecCCCCcc
Q 046226          400 SLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       400 ~~Dg~v~iw~~~~~~~~  416 (434)
                      ...|.|.--.++....+
T Consensus       319 nr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          319 NRKGQVLSVCVEEENII  335 (494)
T ss_dssp             ETTCEEEEEEECTTTHH
T ss_pred             ccCceEEEEEEccccch
Confidence            68999888888876544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.38  E-value=0.06  Score=46.97  Aligned_cols=196  Identities=11%  Similarity=0.157  Sum_probs=114.9

Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC----CC---EEEEEe-c-
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS----DD---TLYSAS-L-  214 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~s~~-~-  214 (434)
                      .++.....+-+.+||+ .++.+..+.                        .+.++.+.+-|+    ++   ++++.. . 
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~------------------------~g~~nnVD~r~~~~l~g~~~dla~as~R~~   96 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYN------------------------TGKLNNVDIRYDFPLNGKKVDIAAASNRSE   96 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEEC------------------------CSCEEEEEEEEEEEETTEEEEEEEEEECST
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEcc------------------------CCCcccEEEecccccCCceEeEEEEeCCCC
Confidence            5555566789999999 565555441                        134555555442    22   223333 3 


Q ss_pred             -CCcEEEEEcC--CCeeEEEccc------Cc-cCeEEEEE--cCC-C--eEEEEeCCCeEEEEecccccC-cceeEEEEE
Q 046226          215 -DKTIKVWRIR--DSKCIETIQA------HS-EPINALVV--ADD-G--VLYSASDDATVRVWRRYFYSE-NQLHTLILT  278 (434)
Q Consensus       215 -dg~i~vwd~~--~~~~~~~~~~------~~-~~v~~~~~--~~~-~--~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~  278 (434)
                       +++|.+|++.  +++ +..+..      .. ..+..+++  ++. +  +++....+|.+..|++..... ....+.+..
T Consensus        97 ~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~  175 (355)
T 3amr_A           97 GKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA  175 (355)
T ss_dssp             TCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence             5789999773  333 444421      11 45666777  663 4  688888999999999863222 234445555


Q ss_pred             ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc-cccccCcc-cCc-ccceEEEEee----CC-EEEEec-CCC
Q 046226          279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA-QLQYGGAL-QGH-THAVMCLASV----AN-YVISGS-ADS  349 (434)
Q Consensus       279 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~-~~~-~~~v~~~~~~----~~-~l~s~~-~dg  349 (434)
                      +.. ...+..+...+....|+.+-++.-|..|+.+.... ........ .++ ...+-.|+..    ++ +|++.+ .+.
T Consensus       176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            543 35788999999899999999997776666542221 11111111 121 2245555552    33 555554 677


Q ss_pred             cEEEEeccCCCceeeEEEe
Q 046226          350 TSRVWAREQDGRHTMLAVL  368 (434)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~  368 (434)
                      .+.+||.+...  +.+..+
T Consensus       255 s~~Vydr~~~~--~~vg~f  271 (355)
T 3amr_A          255 SYAIYDRQGKN--KYVADF  271 (355)
T ss_dssp             EEEEEESSTTC--CEEEEE
T ss_pred             EEEEEECCCCC--cEEEEE
Confidence            99999997321  445554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.31  E-value=0.13  Score=49.40  Aligned_cols=219  Identities=12%  Similarity=0.069  Sum_probs=120.5

Q ss_pred             CCeEEEecCCCce-eEeeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226          111 SNVIRIWKQPEFT-ECGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG  186 (434)
Q Consensus       111 dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
                      ...|+..++.... ....+...-.....|+|++.  .|+.+.. .+.|..+++........+.                 
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~-----------------   79 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-----------------   79 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE-----------------
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE-----------------
Confidence            4678888886543 22222233445788999873  6665544 6778888775432111110                 


Q ss_pred             cccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC-CeEEEEeC--CCeEEEE
Q 046226          187 KDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-GVLYSASD--DATVRVW  262 (434)
Q Consensus       187 ~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~s~~~--dg~i~iw  262 (434)
                          .........+++.+.++.|+.+ ...+.|.+.++........+.........|++.|. +.|+....  .+.|...
T Consensus        80 ----~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~  155 (619)
T 3s94_A           80 ----VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERA  155 (619)
T ss_dssp             ----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             ----eCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEE
Confidence                0122467899999866655554 55689999998754332223234455778999886 45554442  4566666


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCE
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANY  341 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  341 (434)
                      ++.   +.......   .........|++++++..|+.+ ...+.|..+|+.........    .+......++++.++.
T Consensus       156 ~~d---G~~~~~l~---~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~----~~~~~~P~gi~~~~~~  225 (619)
T 3s94_A          156 GMD---GSSRFIII---NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV----KGSLPHPFALTLFEDI  225 (619)
T ss_dssp             ETT---SCSCEEEE---CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------CCCEEESSSE
T ss_pred             ECC---CCceEEEE---eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE----eCCCCCceEEEEeCCE
Confidence            654   22222221   1233467899999976666555 45678998888643222211    1111223456666654


Q ss_pred             EE-EecCCCcEEEEeccCCC
Q 046226          342 VI-SGSADSTSRVWAREQDG  360 (434)
Q Consensus       342 l~-s~~~dg~i~iwd~~~~~  360 (434)
                      |+ +-...+.|...|..++.
T Consensus       226 ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          226 LYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEEECTTTCSEEEEESSSCC
T ss_pred             EEEecCCCCEEEEEECCCCc
Confidence            44 44456788888887663

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.30  E-value=0.073  Score=46.33  Aligned_cols=192  Identities=9%  Similarity=0.075  Sum_probs=92.7

Q ss_pred             ecCCCEEEEEec----CC-------cEEEEEcCCCeeEE--EcccCccCeEEEEEcCCCeEEEEeCC-------CeEEEE
Q 046226          203 NVSDDTLYSASL----DK-------TIKVWRIRDSKCIE--TIQAHSEPINALVVADDGVLYSASDD-------ATVRVW  262 (434)
Q Consensus       203 ~~~~~~l~s~~~----dg-------~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~l~s~~~d-------g~i~iw  262 (434)
                      ..++..++.|+.    ++       .+.+||..+.+-..  .+...... .+++...+..++.|+.+       ..+.+|
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y  132 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCY  132 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEECCEEEEEcCccCCCCcccceEEEE
Confidence            346777777773    12       17788887664322  12211111 22333333366666643       346777


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC------CCeEEEEEcCcccccccccCcccCcccceEEEE
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA  336 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  336 (434)
                      |+.    .........+....... +++. .++.+++.|+.      -..+.+||+.+..  ......+........+..
T Consensus       133 d~~----~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~  204 (318)
T 2woz_A          133 DPV----AAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAI  204 (318)
T ss_dssp             ETT----TTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE
T ss_pred             eCC----CCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEE
Confidence            765    12233222222111111 1222 35666666654      2358899986432  222222222122223344


Q ss_pred             eeCCEEEEecCC-----CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC---------
Q 046226          337 SVANYVISGSAD-----STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD---------  402 (434)
Q Consensus       337 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D---------  402 (434)
                      .++.+++.|+.+     ..+.+||+.+. .+..+..+....... +++. .+         +.+++.||.+         
T Consensus       205 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~-~~~~-~~---------~~i~v~GG~~~~~~~~~~~  272 (318)
T 2woz_A          205 HKGKIVIAGGVTEDGLSASVEAFDLKTN-KWEVMTEFPQERSSI-SLVS-LA---------GSLYAIGGFAMIQLESKEF  272 (318)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEEEETTTC-CEEECCCCSSCCBSC-EEEE-ET---------TEEEEECCBCCBC----CC
T ss_pred             ECCEEEEEcCcCCCCccceEEEEECCCC-eEEECCCCCCcccce-EEEE-EC---------CEEEEECCeeccCCCCcee
Confidence            567777777653     35778898875 334433332222111 2222 23         5677877764         


Q ss_pred             -----CeEEEEecCCCCc
Q 046226          403 -----GVLKMWRVTRPKS  415 (434)
Q Consensus       403 -----g~v~iw~~~~~~~  415 (434)
                           ..|.+||+.+.+-
T Consensus       273 ~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          273 APTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             BCCBCCCEEEEETTTTEE
T ss_pred             ccceeeeEEEEeCCCCEe
Confidence                 3577888876543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.27  E-value=0.036  Score=49.53  Aligned_cols=152  Identities=10%  Similarity=0.104  Sum_probs=94.0

Q ss_pred             EecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC----ccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcc------
Q 046226          202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH----SEPINALVVADDGVLYSASDDATVRVWRRYFYSENQ------  271 (434)
Q Consensus       202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------  271 (434)
                      ...++..++.+- ++.||.-++......+.+...    -..|..+..+|+|.+++...+..|.|..+.......      
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccc
Confidence            345677777766 578998888754444444432    236788999999955455566789998886221111      


Q ss_pred             --eeEEEEEecc----cccCeEEEEEec---CCCEEEEEcCCCeEEEEEcCcccc-cccccC-----cccCcccceEEEE
Q 046226          272 --LHTLILTLTA----KYSPVKTLTLTL---DDGLLYGGCTDGYIHYWHKGWFSA-QLQYGG-----ALQGHTHAVMCLA  336 (434)
Q Consensus       272 --~~~~~~~~~~----~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~-----~~~~~~~~v~~~~  336 (434)
                        .......+..    ...+|..+.|+|   .+..|++-..|+.|++||+..... +..+..     ........|.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence              1111112211    246799999999   467899999999999999975221 111111     1112235677888


Q ss_pred             eeCC----EEEEecCCCcEEEE
Q 046226          337 SVAN----YVISGSADSTSRVW  354 (434)
Q Consensus       337 ~~~~----~l~s~~~dg~i~iw  354 (434)
                      |.+.    |+++.+.+|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            8644    55556688887654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.24  E-value=0.19  Score=49.74  Aligned_cols=279  Identities=11%  Similarity=0.122  Sum_probs=145.6

Q ss_pred             cEEEEEEcCCEEEEEeCCCeEEEecCCCceeEee-c---cCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceee
Q 046226           94 QILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGR-L---KAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHV  168 (434)
Q Consensus        94 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~---~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~  168 (434)
                      .|.++..++..|..|+.+ -|..+|..+.+.... .   ......|.++....+ .+.+++.+| +..++...... ..+
T Consensus       104 ~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~-~~~  180 (758)
T 3ott_A          104 DVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKF-EGI  180 (758)
T ss_dssp             CEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEE-EEE
T ss_pred             eEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCce-EEe
Confidence            477766555567777766 577888766543321 0   112346888877754 677777654 66777544321 111


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG  248 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (434)
                      .   .+..             .......|.++....++..|..|+. +-|..+|..+++...........|.++....++
T Consensus       181 ~---~~~~-------------~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g  243 (758)
T 3ott_A          181 P---LPVH-------------SSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG  243 (758)
T ss_dssp             C---CCCC-------------TTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC
T ss_pred             c---CCCc-------------cccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC
Confidence            0   0000             0001234788887777776666764 458889987765432211223468888888888


Q ss_pred             eEEEEeCCCeEEEEecccccCcceeEEEEEe----cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC-
Q 046226          249 VLYSASDDATVRVWRRYFYSENQLHTLILTL----TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG-  323 (434)
Q Consensus       249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-  323 (434)
                      .|..|+.+ -+.++|...   ..........    ......|.++..+.+|. |..|+..| +.++....   ...... 
T Consensus       244 ~lWigT~~-Gl~~~~~~~---~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~---~~~~~~~  314 (758)
T 3ott_A          244 DLLAGTDN-GLYVYHNDT---TPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS---ALQFIPI  314 (758)
T ss_dssp             CEEEEETT-EEEEECCTT---SCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC----CEEEEH
T ss_pred             CEEEEeCC-ceeEEecCC---CcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC---ceeEEec
Confidence            66667754 477787541   1111110000    01224588888877665 55566666 54443211   111100 


Q ss_pred             ---cccCcccceEEEEeeC-CEEEEecCCCcEEEEeccCCCceeeEEEee-------ccccceeEEEEeecccCCCCCCc
Q 046226          324 ---ALQGHTHAVMCLASVA-NYVISGSADSTSRVWAREQDGRHTMLAVLV-------GHRGPIRCAIAFLGRFGEETEDE  392 (434)
Q Consensus       324 ---~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~~~~  392 (434)
                         ........|.++..+. ..|..|+.+| +..++..++.. ..+..+.       -....|.++.-..+         
T Consensus       315 ~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~---------  383 (758)
T 3ott_A          315 SQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGER-HDAIWYRMGDKTYPLSHNRIRHIYEDKE---------  383 (758)
T ss_dssp             HHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSC-CCCEEECTTCSSSCCSCSCEEEEEECTT---------
T ss_pred             ccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeeccccccc-ceeEEeccCCcCCCCCCCceEEEEECCC---------
Confidence               0001224577777663 3555566555 55666544211 1111111       01234666665544         


Q ss_pred             ccEEEEeecCCeEEEEecCCCC
Q 046226          393 YCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       393 ~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      +. |..|. ++-|..++..+++
T Consensus       384 g~-lWigt-~~GL~~~~~~~~~  403 (758)
T 3ott_A          384 QQ-LWIAT-DGSINRYDYATRQ  403 (758)
T ss_dssp             SC-EEEEE-TTEEEEEETTTTE
T ss_pred             CC-EEEEe-CCcHhhcCcCCCc
Confidence            44 44455 4568888876543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.22  E-value=0.015  Score=51.99  Aligned_cols=113  Identities=18%  Similarity=0.177  Sum_probs=78.9

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCe------------eEEEccc------CccCeEEEEEcCCC----eEEEE
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSK------------CIETIQA------HSEPINALVVADDG----VLYSA  253 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~~------~~~~v~~~~~~~~~----~l~s~  253 (434)
                      .|..+..+|+|++|+..+ +..|.|..+..+.            ..+.+..      ...+|..+.|+|-+    .|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            577899999999999887 5679998886321            1122221      24679999999965    79999


Q ss_pred             eCCCeEEEEecccccCcceeEE-----EEEecccccCeEEEEEecCCCEEEEEc--CCCeEEEE
Q 046226          254 SDDATVRVWRRYFYSENQLHTL-----ILTLTAKYSPVKTLTLTLDDGLLYGGC--TDGYIHYW  310 (434)
Q Consensus       254 ~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~  310 (434)
                      ..|+.|++||+........ ..     ..........|.+++|..++-.|+..+  .+|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999984221111 01     011222336789999999888788755  88888765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.19  E-value=0.11  Score=46.04  Aligned_cols=144  Identities=7%  Similarity=-0.091  Sum_probs=69.6

Q ss_pred             CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC------CCeEEEEEcCcccccccccCcccCcc-
Q 046226          257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT------DGYIHYWHKGWFSAQLQYGGALQGHT-  329 (434)
Q Consensus       257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~-  329 (434)
                      ..+.+||+.    .........+......-.+++.. ++++++.|+.      ...+.+||++...........+.... 
T Consensus       168 ~~v~~yd~~----~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~  242 (357)
T 2uvk_A          168 KFLLSFDPS----TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG  242 (357)
T ss_dssp             CEEEEEETT----TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred             ccEEEEeCC----CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence            468888876    22333333332211111223332 5566666653      34577787633333333322221111 


Q ss_pred             -cceEEEEeeCCEEEEecCC----------------------CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccC
Q 046226          330 -HAVMCLASVANYVISGSAD----------------------STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFG  386 (434)
Q Consensus       330 -~~v~~~~~~~~~l~s~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  386 (434)
                       ..-.+...++.+++.|+.+                      ..+.+||+.+. .+..+..+......-.+  +..+   
T Consensus       243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~--~~~~---  316 (357)
T 2uvk_A          243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG-KWDKSGELSQGRAYGVS--LPWN---  316 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEE--EEET---
T ss_pred             cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC-ceeeCCCCCCCccccee--EEeC---
Confidence             1123445567777777732                      25788998865 44555544433222222  2233   


Q ss_pred             CCCCCcccEEEEeecCC------eEEEEecCCCCccc
Q 046226          387 EETEDEYCTICTGSLDG------VLKMWRVTRPKSSC  417 (434)
Q Consensus       387 ~~~~~~~~~l~s~~~Dg------~v~iw~~~~~~~~~  417 (434)
                            +++++.||.++      .|.++++++.+...
T Consensus       317 ------~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          317 ------NSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             ------TEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             ------CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence                  67888888653      35566888776543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.17  E-value=0.29  Score=50.64  Aligned_cols=177  Identities=7%  Similarity=0.001  Sum_probs=105.4

Q ss_pred             CcEEEEEcCCCeeEEEccc-CccCeEEEEE---cCC--CeEEEEe----------CCCeEEEEecccccCcceeEEEEEe
Q 046226          216 KTIKVWRIRDSKCIETIQA-HSEPINALVV---ADD--GVLYSAS----------DDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       216 g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~---~~~--~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      +.|++.|..+.+.+..+.- ....+.+++.   ..+  .+++.|+          ..|.|.+|++.   +. ..+.+.. 
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~---~~-kL~lv~~-  881 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS---DG-KLQTVAE-  881 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE---TT-EEEEEEE-
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE---CC-EEEEEEE-
Confidence            3577888777776655543 2334555543   333  2777775          35889999986   11 2222222 


Q ss_pred             cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226          280 TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      ....+++++++-- +| +|++|- ..+|++|++...+.. ......-.+ -.+..+...+++++.|..-..|.++..+..
T Consensus       882 ~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L-~~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~  956 (1158)
T 3ei3_A          882 KEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKEL-RTECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKPM  956 (1158)
T ss_dssp             EEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCE-EEEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEETT
T ss_pred             EEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceE-EEEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEcC
Confidence            2345778887754 34 454443 478999998643211 111110111 113456667999999998888877665432


Q ss_pred             C-ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226          360 G-RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       360 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~  413 (434)
                      . +...+ .-..+...++++.+-.+          ..++.+..+|.|.+...+..
T Consensus       957 ~~~L~~~-a~D~~~~~vta~~~ld~----------~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          957 EGNFEEI-ARDFNPNWMSAVEILDD----------DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp             TTEEEEE-EECCSCBCEEEEEEEET----------TEEEEEETTSEEEEEEECTT
T ss_pred             CCeEEEE-EeecccccEEEEEEEcc----------CcEEEEcCCCcEEEEecCCC
Confidence            2 11222 22334567888888754          36888999999999988764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.14  E-value=0.089  Score=45.72  Aligned_cols=146  Identities=7%  Similarity=-0.010  Sum_probs=72.7

Q ss_pred             CCCEEEEEecC--------CcEEEEEcCCCeeE--EEcccCccCeEEEEEcCCCeEEEEeC-C-----CeEEEEeccccc
Q 046226          205 SDDTLYSASLD--------KTIKVWRIRDSKCI--ETIQAHSEPINALVVADDGVLYSASD-D-----ATVRVWRRYFYS  268 (434)
Q Consensus       205 ~~~~l~s~~~d--------g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~  268 (434)
                      ++..++.|+.+        ..+.+||..+.+-.  ..+...... .+++...+.+++.|+. +     ..+.+||+.   
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~---  173 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK---  173 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCTTSCBCCCEEEEETT---
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEECCEEEEEeCCCCCCcccceEEEEeCC---
Confidence            56666666632        46889999876422  222211111 2233333336666665 2     468888876   


Q ss_pred             CcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-----eEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226          269 ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-----YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI  343 (434)
Q Consensus       269 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  343 (434)
                       .........+.........+.  -++++++.|+.++     .+.+||+.+.  .......+........++..++.+++
T Consensus       174 -~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~l~v  248 (315)
T 4asc_A          174 -KFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSLVGTLYA  248 (315)
T ss_dssp             -TTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred             -CCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEECCEEEE
Confidence             122322222221111122222  2567777776544     5788887643  22222222222222234455677777


Q ss_pred             EecCCC--------------cEEEEeccCC
Q 046226          344 SGSADS--------------TSRVWAREQD  359 (434)
Q Consensus       344 s~~~dg--------------~i~iwd~~~~  359 (434)
                      .|+.++              .+.+||+.+.
T Consensus       249 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          249 IGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             ECCccccCcCCccccccccCcEEEecCCCC
Confidence            777542              3677887765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.01  E-value=0.11  Score=53.70  Aligned_cols=260  Identities=9%  Similarity=0.041  Sum_probs=140.8

Q ss_pred             CCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226          110 DSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD  188 (434)
Q Consensus       110 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
                      .+..|.|.|+.++..+.+-.   -..-+.-.+|. .+++--...++.|+|+++...++...                   
T Consensus        46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~-------------------  103 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT-------------------  103 (1630)
T ss_pred             CCceEEEEECCCCCCccccc---ccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccc-------------------
Confidence            34488888988765442211   11122334554 34443457899999998877766653                   


Q ss_pred             cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC-CeeEEEcccC----ccCeEEEEEcCCC--eEEEEe------C
Q 046226          189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD-SKCIETIQAH----SEPINALVVADDG--VLYSAS------D  255 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~--~l~s~~------~  255 (434)
                          ...+|.-=.|-. .+.|+-.+ +..|+-|++.. ..+++.+..|    ...|..-..+++.  .+++|-      -
T Consensus       104 ----~~e~VvfWkWis-~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v  177 (1630)
T 1xi4_A          104 ----MTDDVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV  177 (1630)
T ss_pred             ----cCCCceEEEecC-CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcc
Confidence                334555555643 44555555 56799999964 3455555544    3456666777777  333332      3


Q ss_pred             CCeEEEEecccccCcceeEEEEEecccccCeEEEEEec--C-CCEEEEEc---CCCeEEEEEcCcc-ccccccc------
Q 046226          256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL--D-DGLLYGGC---TDGYIHYWHKGWF-SAQLQYG------  322 (434)
Q Consensus       256 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~l~~~~---~dg~i~i~d~~~~-~~~~~~~------  322 (434)
                      .|.+.+|...       ......+.+|.+....+....  . ...+..+.   ..++++|-++... .....+.      
T Consensus       178 ~G~mQLyS~e-------r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~  250 (1630)
T 1xi4_A          178 VGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV  250 (1630)
T ss_pred             cceeeeeecc-------cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccc
Confidence            5788888765       222333444443333332211  1 11222221   1378999998643 1111111      


Q ss_pred             -CcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226          323 -GALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       323 -~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                       ........-..++..+.+  .+...+.-|.|++||+.++   .++..-+-...+|...+.....        +. ++..
T Consensus       251 ~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~iF~~~~~~~~--------~g-~~~v  318 (1630)
T 1xi4_A          251 FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGETIFVTAPHEAT--------AG-IIGV  318 (1630)
T ss_pred             cCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCceEEeccCCCC--------Cc-eEEE
Confidence             000111222344555543  6777788999999999998   5555544445555444433321        33 4444


Q ss_pred             ecCCeEEEEecCCCCcc
Q 046226          400 SLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       400 ~~Dg~v~iw~~~~~~~~  416 (434)
                      ...|.|.--.++....+
T Consensus       319 nr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          319 NRKGQVLSVCVEEENII  335 (1630)
T ss_pred             cCCceEEEEEEccchhh
Confidence            47777777776665543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.96  E-value=0.18  Score=44.64  Aligned_cols=237  Identities=10%  Similarity=0.001  Sum_probs=119.4

Q ss_pred             ccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---CCE
Q 046226          133 SMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---DDT  208 (434)
Q Consensus       133 ~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~  208 (434)
                      .....|+|.|+ .++++..+|.|++++. .+.  ..+  ...+              ...........|+++|+   +..
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~--~~~--~~~~--------------v~~~g~~g~~gia~~pdf~~~g~   89 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK--KLV--ASFD--------------VANVGEAGLLGLALHPEFPKKSW   89 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCE--EEE--EECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc--eEe--eccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence            44688999987 7888888899998873 222  111  1110              00112345789999997   566


Q ss_pred             EEEEec----C----CcEEEEEcCCC-------eeE-EEccc-CccCeEEEEEcCCC-eEEEEeC-------------CC
Q 046226          209 LYSASL----D----KTIKVWRIRDS-------KCI-ETIQA-HSEPINALVVADDG-VLYSASD-------------DA  257 (434)
Q Consensus       209 l~s~~~----d----g~i~vwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~-~l~s~~~-------------dg  257 (434)
                      |+++..    +    +.|..|+....       +.+ ..+.. .......|+|.|+| ++++.+.             .|
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G  169 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG  169 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence            665543    2    56888887643       111 11221 11234679999999 4444322             24


Q ss_pred             eEEEEeccccc--Ccce-eEEEEEecccccCeEEEEEec-CCCEEEEEcCCC---eEEEEEcCcccc---------c---
Q 046226          258 TVRVWRRYFYS--ENQL-HTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDG---YIHYWHKGWFSA---------Q---  318 (434)
Q Consensus       258 ~i~iwd~~~~~--~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~---------~---  318 (434)
                      .|.-++....-  .... ...+.. .++ .....++|+| +++++++-....   .|.+........         .   
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~  247 (354)
T 3a9g_A          170 KILRVDEEGRPPADNPFPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF  247 (354)
T ss_dssp             EEEEECTTSCCCTTSSSTTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred             EEEEEcCCCCCCCCCCCCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCC
Confidence            55555543100  0000 001111 122 3456899999 555444432221   243332110000         0   


Q ss_pred             ccccCcc-cCcccceEEEEe---------eCCEEEEecCCCcEEEEeccCCCceeeEEEe-eccccceeEEEEeecccCC
Q 046226          319 LQYGGAL-QGHTHAVMCLAS---------VANYVISGSADSTSRVWAREQDGRHTMLAVL-VGHRGPIRCAIAFLGRFGE  387 (434)
Q Consensus       319 ~~~~~~~-~~~~~~v~~~~~---------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~  387 (434)
                      ......+ ..| .....+.+         .|+++++.-..+.|...++...+.......+ .+-...+..+++.|+    
T Consensus       248 ~~p~~~~~~~~-~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD----  322 (354)
T 3a9g_A          248 VDPVIDTGSET-WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD----  322 (354)
T ss_dssp             CCCSEECTTCC-CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT----
T ss_pred             cCCEeecCCCC-cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC----
Confidence            0000111 112 24556665         3556666666778888888753222112222 222456888999888    


Q ss_pred             CCCCcccEEEEee
Q 046226          388 ETEDEYCTICTGS  400 (434)
Q Consensus       388 ~~~~~~~~l~s~~  400 (434)
                           |.+.++..
T Consensus       323 -----G~lyv~~~  330 (354)
T 3a9g_A          323 -----GGILISTS  330 (354)
T ss_dssp             -----SCEEEEEC
T ss_pred             -----CcEEEEEe
Confidence                 76666553

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.92  E-value=0.18  Score=43.86  Aligned_cols=145  Identities=7%  Similarity=0.079  Sum_probs=72.4

Q ss_pred             CCCEEEEEecC-------CcEEEEEcCCCeeEE--EcccCccCeEEEEEcCCC-eEEEEeC------CCeEEEEeccccc
Q 046226          205 SDDTLYSASLD-------KTIKVWRIRDSKCIE--TIQAHSEPINALVVADDG-VLYSASD------DATVRVWRRYFYS  268 (434)
Q Consensus       205 ~~~~l~s~~~d-------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~s~~~------dg~i~iwd~~~~~  268 (434)
                      ++..++.|+.+       ..+.+||..+.+-..  .+......- +++.. ++ +++.|+.      -..+.+||+.   
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~---  183 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVISH-NGMIYCLGGKTDDKKCTNRVFIYNPK---  183 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEEE-TTEEEEECCEESSSCBCCCEEEEETT---
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEEE-CCEEEEEcCCCCCCCccceEEEEcCC---
Confidence            56667777654       357888987764322  222111111 22233 45 5566653      2358888876   


Q ss_pred             CcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226          269 ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI  343 (434)
Q Consensus       269 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  343 (434)
                       ................. +++. -++++++.|+.+     ..+.+||+.+.  .......+........++..++.+++
T Consensus       184 -~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v  258 (318)
T 2woz_A          184 -KGDWKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN--KWEVMTEFPQERSSISLVSLAGSLYA  258 (318)
T ss_dssp             -TTEEEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC--CEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred             -CCEEEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCC--eEEECCCCCCcccceEEEEECCEEEE
Confidence             12233332222211112 2222 256677776543     35778887643  22222222222222234455677777


Q ss_pred             EecCC--------------CcEEEEeccCC
Q 046226          344 SGSAD--------------STSRVWAREQD  359 (434)
Q Consensus       344 s~~~d--------------g~i~iwd~~~~  359 (434)
                      .|+.+              ..+.+||+.+.
T Consensus       259 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          259 IGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             ECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             ECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            77754              35778888765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.90  E-value=0.028  Score=45.29  Aligned_cols=153  Identities=11%  Similarity=0.003  Sum_probs=80.5

Q ss_pred             cEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226          134 MVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA  212 (434)
Q Consensus       134 ~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  212 (434)
                      .+.+++|+|+ .|+++ .+|.+.-.+..+.....-+...         ..+  +.   .+-. ...++.|.++|.+.++ 
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~---------t~I--G~---~Gw~-~F~a~~fD~~G~LYav-  104 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRA---------KKI--GN---GGWN-QFQFLFFDPNGYLYAV-  104 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHC---------EEE--EC---SCGG-GCSEEEECTTSCEEEE-
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccc---------cEe--cc---cccc-cceEEEECCCCCEEEe-
Confidence            5679999998 66666 7787655554321111100000         000  00   0111 1578899999988877 


Q ss_pred             ecCCcEEEEEcCCCeeE-------EEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcc-eeEEEEEeccccc
Q 046226          213 SLDKTIKVWRIRDSKCI-------ETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQ-LHTLILTLTAKYS  284 (434)
Q Consensus       213 ~~dg~i~vwd~~~~~~~-------~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~  284 (434)
                       .||.|+-++-.+...-       ..-..-=..+..|.+.|+|.|.+.. |+.+.-+......... .............
T Consensus       105 -~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~  182 (236)
T 1tl2_A          105 -SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWD  182 (236)
T ss_dssp             -ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGG
T ss_pred             -CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcc
Confidence             5699988876332110       0001111467899999999777777 8885433221000000 0011111112233


Q ss_pred             CeEEEEEecCCCEEEEEcCCCeE
Q 046226          285 PVKTLTLTLDDGLLYGGCTDGYI  307 (434)
Q Consensus       285 ~v~~~~~~~~~~~l~~~~~dg~i  307 (434)
                      ..+.+.|.+++.+.++.  +|.+
T Consensus       183 ~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          183 TFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             GEEEEEECTTSCEEEEE--TTEE
T ss_pred             eEEEEEECCCCcEEEEe--CCeE
Confidence            44557788888877766  6744

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.029  Score=49.03  Aligned_cols=115  Identities=10%  Similarity=0.190  Sum_probs=72.8

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeeccCCC-ccEEEEEEe----CCEEEEE--EcCCeEEEeecCCCCCceeeEeeecc
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKT-SMVVAMEVS----HDRVYAA--YGDGKIRVWRSTWDNGVKHVKLATIP  174 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~----~~~l~~~--s~dg~i~vwd~~~~~~~~~~~~~~~~  174 (434)
                      ++++++++.||.|.-.|.++|+...+++... .++....-.    .+.++.+  +.||.|..++..++.....+.+...-
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            5678999999999999999999998886541 222221100    1244544  57999999998765332222211100


Q ss_pred             CCCCceeEEEeccccccCcCCCeEE---EEE-----ecCCCEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226          175 KTGGAVRNLIVGKDKMMKHMGPITS---IAI-----NVSDDTLYSASLDKTIKVWRIRDSKCIETIQA  234 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~---~~~-----~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  234 (434)
                                        ...++..   ..+     ...+..+++|+.+|.+...|+.+|+.+..+..
T Consensus        90 ------------------~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 ------------------STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             ------------------TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ------------------eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence                              1112221   000     01466889999999999999999999998864

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.72  E-value=0.54  Score=46.49  Aligned_cols=231  Identities=11%  Similarity=0.092  Sum_probs=126.5

Q ss_pred             ccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226           93 GQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus        93 ~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      ..|.++.. ....|..|+.+| +..||..+.+...........|.++....+.|..++.+ -+..+|..+... ..+.  
T Consensus        63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~-~~~~--  137 (758)
T 3ott_A           63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKL-TSFD--  137 (758)
T ss_dssp             SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCE-EEEC--
T ss_pred             ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeE-EEec--
Confidence            46888877 566788888765 67889877543321111234577776666688888876 577888654321 1110  


Q ss_pred             eccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE-ccc----CccCeEEEEEcC
Q 046226          172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET-IQA----HSEPINALVVAD  246 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~  246 (434)
                      ....               .-....|.++....++.+.+ |+.+ -|..+|..+++.... ...    ....|.++....
T Consensus       138 ~~~~---------------~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  200 (758)
T 3ott_A          138 TRRN---------------GLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDT  200 (758)
T ss_dssp             HHHH---------------CCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEET
T ss_pred             cCCC---------------CcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEEC
Confidence            0000               01234578887776666544 5544 488888876653221 111    123488888876


Q ss_pred             CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC--
Q 046226          247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG--  323 (434)
Q Consensus       247 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  323 (434)
                      ++ .|..|+. +-+..+|...   . .......+  ....|.++....+|.+.+ |+.+ -+.+++............  
T Consensus       201 ~~~~lWigt~-~Gl~~~~~~~---~-~~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~  271 (758)
T 3ott_A          201 TRQCVWIGTE-GYLFQYFPST---G-QIKQTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSR  271 (758)
T ss_dssp             TTTEEEEEEE-EEEEEEETTT---T-EEEEEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTT
T ss_pred             CCCEEEEEEC-CCCeEEcCCC---C-eEEeccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCC
Confidence            65 5566664 4577787651   1 11111111  234578888877766544 5544 577887653221111000  


Q ss_pred             -cccCcccceEEEEeeC-CEEEEecCCCcEEEEe
Q 046226          324 -ALQGHTHAVMCLASVA-NYVISGSADSTSRVWA  355 (434)
Q Consensus       324 -~~~~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd  355 (434)
                       ...-....|.++..+. ..|..|+..| +.++.
T Consensus       272 ~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~  304 (758)
T 3ott_A          272 NIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLSR  304 (758)
T ss_dssp             CTTSCSCSCEEEEEECTTCCEEEEESSS-EEEEC
T ss_pred             CcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccccc
Confidence             0011234688887763 3566666666 54443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.59  E-value=0.35  Score=42.76  Aligned_cols=247  Identities=12%  Similarity=0.061  Sum_probs=119.8

Q ss_pred             cEEEEEEeCC-E-EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---CCE
Q 046226          134 MVVAMEVSHD-R-VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---DDT  208 (434)
Q Consensus       134 ~v~~l~~~~~-~-l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~  208 (434)
                      ....|+|.|+ . ++++...|.|++++.... ....+  ...+.             ...........|+++|+   +..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~-~~~~~--~~~~~-------------v~~~g~~g~~gia~~pdf~~~g~   82 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKG-LSAPL--SGVPD-------------VWAHGQGGLLDVVLAPDFAQSRR   82 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTE-ECCCC--BSCCC-------------CCCSTTCSEEEEEECTTHHHHCE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCc-eeeEe--cCCcc-------------cccCCCCCceeEEECCCCCCCCE
Confidence            4678999997 6 888888999998874311 10000  00000             00123345689999996   555


Q ss_pred             EEEEec--------CCcEEEEEcCCC-------eeE-EEccc---CccCeEEEEEcCCCeEEEEeCC-------------
Q 046226          209 LYSASL--------DKTIKVWRIRDS-------KCI-ETIQA---HSEPINALVVADDGVLYSASDD-------------  256 (434)
Q Consensus       209 l~s~~~--------dg~i~vwd~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~l~s~~~d-------------  256 (434)
                      |+....        ...|..+++...       +.+ ..+..   ....-..|+|.|++.|+.+..|             
T Consensus        83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~  162 (353)
T 2g8s_A           83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKL  162 (353)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSC
T ss_pred             EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCC
Confidence            555432        235666766432       111 11211   1122457999999944433322             


Q ss_pred             -CeEEEEeccccc--Ccc------eeEEEEEecccccCeEEEEEecCCCEEEEEcCC--CeEEEEEcCccccc-------
Q 046226          257 -ATVRVWRRYFYS--ENQ------LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD--GYIHYWHKGWFSAQ-------  318 (434)
Q Consensus       257 -g~i~iwd~~~~~--~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~-------  318 (434)
                       |.|.-+|.....  ...      ....+.. .++ .....++|+|....|+++...  +.=.|.-+.....-       
T Consensus       163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~  240 (353)
T 2g8s_A          163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATW  240 (353)
T ss_dssp             TTEEEEEETTSCCCTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCS
T ss_pred             CeEEEEECCCCCCCCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccC
Confidence             456555544100  000      0001111 112 346789999944444444332  11122211111000       


Q ss_pred             -----------------cccc---CcccCcccceEEEEee---------CCEEEEecCCCcEEEEeccCCCceeeEEEee
Q 046226          319 -----------------LQYG---GALQGHTHAVMCLASV---------ANYVISGSADSTSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       319 -----------------~~~~---~~~~~~~~~v~~~~~~---------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  369 (434)
                                       ..+.   ..+ .+......+.+.         ++++++.-..+.|...++..+........+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~  319 (353)
T 2g8s_A          241 GINYSGFKIPEAKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT  319 (353)
T ss_dssp             SBCTTSSCCTTCCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG
T ss_pred             CCCCCCCccCcccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc
Confidence                             0000   001 112245566653         5677777777888888887542111111122


Q ss_pred             ccccceeEEEEeecccCCCCCCcccEEEEee-cCCeEEEEec
Q 046226          370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGS-LDGVLKMWRV  410 (434)
Q Consensus       370 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~iw~~  410 (434)
                      .-...+..+++.|+         |.+.++.. .+|  +||.+
T Consensus       320 ~~~~rp~~v~~~pd---------G~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          320 DRGQRIRDVRTGPD---------GYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             GGCCCEEEEEECTT---------SCEEEEECSTTE--EEEEE
T ss_pred             CCCCceeEEEECCC---------CcEEEEEeCCCC--EEEEE
Confidence            33357889999988         77666433 445  44544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.55  E-value=0.48  Score=43.78  Aligned_cols=246  Identities=8%  Similarity=0.049  Sum_probs=127.5

Q ss_pred             EEEEEEc---CCEEEEE-eCCCeEEEecCCCceeEeeccCC---CccEEEEEE-------eCC--EEEEEEcCC------
Q 046226           95 ILCIAVG---NGFIYTG-SDSNVIRIWKQPEFTECGRLKAK---TSMVVAMEV-------SHD--RVYAAYGDG------  152 (434)
Q Consensus        95 v~~~~~~---~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~-------~~~--~l~~~s~dg------  152 (434)
                      ...|+|+   +..|+.+ ...+.|++.|.+++.....+...   -.....++|       +++  .|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            4567774   3444444 44468999998887665544332   235789999       775  577776654      


Q ss_pred             -eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE-EEEEecCCcEEEEEcC------
Q 046226          153 -KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT-LYSASLDKTIKVWRIR------  224 (434)
Q Consensus       153 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~------  224 (434)
                       .|.+.+.........        .. ....+.        -......++++|++.. +++-..++.|..+|+.      
T Consensus       221 ~~V~~i~r~~~G~~~~--------~~-~~~~v~--------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~  283 (496)
T 3kya_A          221 PSVYIIKRNADGTFDD--------RS-DIQLIA--------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI  283 (496)
T ss_dssp             EEEEEEECCTTSCCST--------TS-CEEEEE--------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred             ceEEEEecCCCCceee--------cc-cceeec--------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence             244554222111110        00 000000        1123456788995544 5555677889999997      


Q ss_pred             -CCee-----------EEE-cc-cCccCeEEEEEcCCC-e-EEEEeCCCeEEEEecccccCcce-eEEEEEe---cc---
Q 046226          225 -DSKC-----------IET-IQ-AHSEPINALVVADDG-V-LYSASDDATVRVWRRYFYSENQL-HTLILTL---TA---  281 (434)
Q Consensus       225 -~~~~-----------~~~-~~-~~~~~v~~~~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~---~~---  281 (434)
                       ++..           ... +. ........|+++|++ . +++-...+.|+.+|......... .....-.   .+   
T Consensus       284 ~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~D  363 (496)
T 3kya_A          284 KNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRD  363 (496)
T ss_dssp             HTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBC
T ss_pred             cCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccC
Confidence             5543           112 11 123446799999999 4 44445678888877541111000 0111111   00   


Q ss_pred             ------cccCeE-EEEEe-------cCCCEEEEEcCCCeEEEEEcCcccccccccCc--------------ccC------
Q 046226          282 ------KYSPVK-TLTLT-------LDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA--------------LQG------  327 (434)
Q Consensus       282 ------~~~~v~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~~~------  327 (434)
                            ...... .++..       .++.++++-.....|+.++... . ...+...              ..+      
T Consensus       364 G~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a  441 (496)
T 3kya_A          364 DVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-I-VSTYAGRGASTSLADGNQWGTDDGDLREVA  441 (496)
T ss_dssp             CBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-B-EEEEEESCTTHHHHHSCSCCCCCEETTTTC
T ss_pred             CcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-C-EEEEecccccccccCccccccCCCCchhhh
Confidence                  112234 45554       4566666667788899998432 1 1111100              001      


Q ss_pred             cccceEEEEeeC---CEEEEecCCCcEEEEeccCC
Q 046226          328 HTHAVMCLASVA---NYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       328 ~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~  359 (434)
                      .-.....++++.   +++++=..+..||.++++..
T Consensus       442 ~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          442 RFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             hcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            112345666653   35555556678888887754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.33  E-value=0.42  Score=49.72  Aligned_cols=206  Identities=9%  Similarity=0.075  Sum_probs=118.9

Q ss_pred             EEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226          201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLT  280 (434)
Q Consensus       201 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  280 (434)
                      -.+|..+.++.-. ..++.|+|+++...+..+.- ...|.-=.|-.+..|+..+ +..|..|++..   .  ..+...+.
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~---~--s~P~k~fd  143 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEG---E--SQPVKMFD  143 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCC---C--CccHHHHh
Confidence            3456666666554 67899999998877776654 3456666676666444443 34699999862   1  11111111


Q ss_pred             cc----ccCeEEEEEecCCCEEEEEc-------CCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-----EEEE
Q 046226          281 AK----YSPVKTLTLTLDDGLLYGGC-------TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-----YVIS  344 (434)
Q Consensus       281 ~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~s  344 (434)
                      .|    ...|..-..+++.++++..+       -.|.+.+|..+..     ..+.+.||.+.-..+...|+     .++.
T Consensus       144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----~sQ~iegha~~F~~~~~~~~~~~~~l~~f  218 (1630)
T 1xi4_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCF  218 (1630)
T ss_pred             cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----cchhhhHhHhhhheeccCCCCCCceEEEE
Confidence            11    35677777788888876433       3688999986432     22345566655544444322     3332


Q ss_pred             ecC---CCcEEEEeccCC--C--ce--eeEEEe-e--ccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          345 GSA---DSTSRVWAREQD--G--RH--TMLAVL-V--GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       345 ~~~---dg~i~iwd~~~~--~--~~--~~~~~~-~--~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      +..   .+.++|-++...  +  ..  +.+..+ .  .-.+-..++..++.         ..++...+.-|.|+++|+.+
T Consensus       219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k---------~g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK---------HDVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc---------cCEEEEEecCceEEEEeccc
Confidence            222   368899888543  1  00  000000 0  01222334555555         66788888999999999999


Q ss_pred             CCccccccccccCceeEe
Q 046226          413 PKSSCGHLNKTNGHEYFE  430 (434)
Q Consensus       413 ~~~~~~~~~~~~g~~~~~  430 (434)
                      +..+.  .+..++.+.|.
T Consensus       290 ~~~i~--~~ris~~~iF~  305 (1630)
T 1xi4_A          290 GTCIY--MNRISGETIFV  305 (1630)
T ss_pred             chhhh--hccccCCceEE
Confidence            97654  34455555444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.19  E-value=0.96  Score=43.43  Aligned_cols=151  Identities=10%  Similarity=0.040  Sum_probs=88.3

Q ss_pred             ccEEEEEE--cCC-EEEEEeCCCeEEEecCCCcee-EeeccCCCccEEEEEEeC--CEEEEEE-cCCeEEEeecCCCCCc
Q 046226           93 GQILCIAV--GNG-FIYTGSDSNVIRIWKQPEFTE-CGRLKAKTSMVVAMEVSH--DRVYAAY-GDGKIRVWRSTWDNGV  165 (434)
Q Consensus        93 ~~v~~~~~--~~~-~l~tg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~--~~l~~~s-~dg~i~vwd~~~~~~~  165 (434)
                      +....++|  .++ ++++-...+.|..+++..... ...+...-.....+++..  +.|+.+. ..+.|.+.+++.....
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            34677888  344 444545567888888765432 222333335678888886  3555554 4788999887643221


Q ss_pred             eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeEEEE
Q 046226          166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPINALV  243 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  243 (434)
                      ....                      ........|++.|.+.+|+....  .+.|...+++...........-.....|+
T Consensus       120 ~l~~----------------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gla  177 (619)
T 3s94_A          120 VLFW----------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT  177 (619)
T ss_dssp             EEEC----------------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred             EEEe----------------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEE
Confidence            1110                      13344678999998766666553  35777777754332222223345678999


Q ss_pred             EcCCC-eE-EEEeCCCeEEEEecc
Q 046226          244 VADDG-VL-YSASDDATVRVWRRY  265 (434)
Q Consensus       244 ~~~~~-~l-~s~~~dg~i~iwd~~  265 (434)
                      +.+++ .| ++=...+.|..+|+.
T Consensus       178 ld~~~~~LY~aD~~~~~I~~~~~d  201 (619)
T 3s94_A          178 LDYEEQKLYWADAKLNFIHKSNLD  201 (619)
T ss_dssp             EETTTTEEEEEETTTCCEEEESSS
T ss_pred             EEccCCEEEEEeCCCCeEEEecCC
Confidence            99865 44 444556778888876

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.13  E-value=1  Score=43.94  Aligned_cols=195  Identities=8%  Similarity=-0.018  Sum_probs=98.4

Q ss_pred             cCCCEEEEEecC----CcEEEEEcCCCeeEEEc--------ccCccCeEEEEEcC-CC-eEEEEeCC------CeEEEEe
Q 046226          204 VSDDTLYSASLD----KTIKVWRIRDSKCIETI--------QAHSEPINALVVAD-DG-VLYSASDD------ATVRVWR  263 (434)
Q Consensus       204 ~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~-~~-~l~s~~~d------g~i~iwd  263 (434)
                      .++..++.|+.+    ..+.+||..+.+-...-        ...... .+++..+ ++ .++.|+.+      ..+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            456777777753    46889998776432221        111112 2334442 55 66666643      2477888


Q ss_pred             cccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC--eEEEEEcCcccccccccCc---ccCcccceEEEEee
Q 046226          264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG--YIHYWHKGWFSAQLQYGGA---LQGHTHAVMCLASV  338 (434)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~  338 (434)
                      +..    ..+.....+..... -.+++...++.+++.|+.++  .+.+||..+..  +.....   .........++.++
T Consensus       475 ~~t----~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~  547 (695)
T 2zwa_A          475 MKT----REWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFD  547 (695)
T ss_dssp             TTT----TEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEE
T ss_pred             CCC----CcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEe
Confidence            761    22332222221111 12233324778888887654  68899976432  222111   11111111234444


Q ss_pred             ---CCEEEEecC--C-----CcEEEEeccCCCc-----eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-
Q 046226          339 ---ANYVISGSA--D-----STSRVWAREQDGR-----HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-  402 (434)
Q Consensus       339 ---~~~l~s~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-  402 (434)
                         +..++.|+.  +     ..+.+||+.+..-     +..+.........-.+++...+         +.+++.||.+ 
T Consensus       548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~---------~~iyv~GG~~~  618 (695)
T 2zwa_A          548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP---------RKLLIVGGTSP  618 (695)
T ss_dssp             TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET---------TEEEEECCBCS
T ss_pred             CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC---------CEEEEECCccC
Confidence               557777765  2     3588999988741     3333332111111123334442         4577777743 


Q ss_pred             -------CeEEEEecCCCCc
Q 046226          403 -------GVLKMWRVTRPKS  415 (434)
Q Consensus       403 -------g~v~iw~~~~~~~  415 (434)
                             ..|.+||+.+.+-
T Consensus       619 ~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          619 SGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             SCCCCTTTSEEEEETTTTEE
T ss_pred             CCCCCCCCeEEEEECCCCeE
Confidence                   4588999887643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.85  E-value=0.88  Score=40.13  Aligned_cols=104  Identities=10%  Similarity=0.028  Sum_probs=60.0

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee--EEEcc---cCccCeEEEEEcCC----CeEEEEeC-C-----CeE
Q 046226          195 GPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC--IETIQ---AHSEPINALVVADD----GVLYSASD-D-----ATV  259 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~----~~l~s~~~-d-----g~i  259 (434)
                      .....++|.|+|++ +++..+|.|++++  .++.  +..+.   ........|+++|+    +.|+.+.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45679999999985 4555679999998  3432  22221   12456789999998    44444332 2     567


Q ss_pred             EEEecccccCcceeEEEEEec---ccccCeEEEEEecCCCEEEEE
Q 046226          260 RVWRRYFYSENQLHTLILTLT---AKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      ..|+...............+.   ........++|.|+|.+.++.
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            777765110001112222232   111234689999999766654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.78  E-value=0.93  Score=39.89  Aligned_cols=189  Identities=11%  Similarity=0.067  Sum_probs=102.3

Q ss_pred             CCeEEEEEecCCCEEEEE------------ecCCcEEEEEcCCC-eeEEEcc--c-----CccCeEEEEEcC--CC--eE
Q 046226          195 GPITSIAINVSDDTLYSA------------SLDKTIKVWRIRDS-KCIETIQ--A-----HSEPINALVVAD--DG--VL  250 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~------------~~dg~i~vwd~~~~-~~~~~~~--~-----~~~~v~~~~~~~--~~--~l  250 (434)
                      ....++.+.++|..++++            ..+|.|.++|..+. .....+.  +     ..-....+.+.+  ++  +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            345677777876555444            26899999998732 1122222  1     123566777755  34  45


Q ss_pred             EEEe-C--CCeEEEEecccccCcceeEEEEEeccc-ccCeEEEEEecCCCEEEEEc-----------------CCCeEEE
Q 046226          251 YSAS-D--DATVRVWRRYFYSENQLHTLILTLTAK-YSPVKTLTLTLDDGLLYGGC-----------------TDGYIHY  309 (434)
Q Consensus       251 ~s~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i  309 (434)
                      +.+. .  +..|.+|++..  ..........+.+. ....+.+.+.++|.+.++..                 ..|.|..
T Consensus       130 ~Vvnh~~~~s~ielf~~d~--~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQE--EEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEECSTTCCEEEEEEEET--TTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEECCCCCCeEEEEEEEC--CCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            5543 2  56788888762  22333344444332 34678999999998777654                 1245555


Q ss_pred             EEcCcccccccccCcccCcccceEEEEee--CCEEE-EecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEee-ccc
Q 046226          310 WHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVI-SGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL-GRF  385 (434)
Q Consensus       310 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~  385 (434)
                      +|..    ...   .+...-.....++++  ++.|+ +-+..+.|+.|++...+.......+. ..+..-.+++.+ +  
T Consensus       208 ~d~~----~~~---~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~--  277 (355)
T 3sre_A          208 YSPN----DVR---VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVT--  277 (355)
T ss_dssp             ECTT----CCE---EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTT--
T ss_pred             EECC----eEE---EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCC--
Confidence            5531    111   111112234566665  55544 44567899999987543333333331 234445566655 3  


Q ss_pred             CCCCCCcccEEEEeecC
Q 046226          386 GEETEDEYCTICTGSLD  402 (434)
Q Consensus       386 ~~~~~~~~~~l~s~~~D  402 (434)
                             |++.+++..+
T Consensus       278 -------G~lwva~~~~  287 (355)
T 3sre_A          278 -------GDLWVGCHPN  287 (355)
T ss_dssp             -------CCEEEEEESC
T ss_pred             -------CcEEEEecCC
Confidence                   6666655433

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.044  Score=47.89  Aligned_cols=146  Identities=15%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             CCEEEEEecCCcEEEEEcCCCeeEEEcccC-ccCeEEEEE---cCCCeEEEE--eCCCeEEEEecccccCcceeEEEEEe
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKCIETIQAH-SEPINALVV---ADDGVLYSA--SDDATVRVWRRYFYSENQLHTLILTL  279 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~---~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~  279 (434)
                      +..++.++.||.|.-+|..+|+.+.+++.. ..++....-   ..++.++.+  +.||.|..+|...  +  ........
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~--G--~~~~~~~~   85 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ--G--LQKLPLSI   85 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT--E--EEEEEEEH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC--C--cEEeeecc
Confidence            457889999999999999999999998754 122222110   013333333  6899999998752  1  11122221


Q ss_pred             cc--cccCeEE---EEE-e----cCCCEEEEEcCCCeEEEEEcCcccccccccCccc-Ccc--cceEEEE-------eeC
Q 046226          280 TA--KYSPVKT---LTL-T----LDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ-GHT--HAVMCLA-------SVA  339 (434)
Q Consensus       280 ~~--~~~~v~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~--~~v~~~~-------~~~  339 (434)
                      ..  ...++..   ..+ .    ..+..+++|+.+|.+...|+.+.+...++..... ++-  ....|..       ..+
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~  165 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE  165 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred             ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence            11  1112211   000 0    1456889999999999999988776666532211 100  0011111       124


Q ss_pred             CEEEEecCCCcEEEEe
Q 046226          340 NYVISGSADSTSRVWA  355 (434)
Q Consensus       340 ~~l~s~~~dg~i~iwd  355 (434)
                      ..++.+..+..+.+.+
T Consensus       166 ~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          166 NMIVIGKTIFELGIHS  181 (339)
T ss_dssp             CEEEEEEEEEECEECC
T ss_pred             CeEEEecceEEEEEEC
Confidence            5666666666666665

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.59  E-value=0.93  Score=38.52  Aligned_cols=223  Identities=16%  Similarity=0.145  Sum_probs=116.9

Q ss_pred             cEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeec
Q 046226           94 QILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATI  173 (434)
Q Consensus        94 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~  173 (434)
                      .|..++......+.-. ||.|..|-....-.+..-......|..++......++-. ||.|..|-.........      
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~------   96 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV------   96 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC------
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC------
Confidence            3556666333333334 889999865432211111112336777877777444445 99999997654322211      


Q ss_pred             cCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEE
Q 046226          174 PKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA  253 (434)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~  253 (434)
                      |.                .-...|..++...  ...+.-. ||.|+.|-....-.+..-......|..++......++. 
T Consensus        97 P~----------------~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-  156 (282)
T 3qhy_B           97 PA----------------EARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-  156 (282)
T ss_dssp             CG----------------GGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-
T ss_pred             Cc----------------ccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-
Confidence            00                1124677777653  3444445 89999997654222211112234677777654443333 


Q ss_pred             eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceE
Q 046226          254 SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVM  333 (434)
Q Consensus       254 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  333 (434)
                      . ||.|..|-.......  .    ........|..++.... ..++.  .||.|+.|-...........    .....|.
T Consensus       157 ~-~G~v~~wG~n~~gql--g----~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~----~~~~~v~  222 (282)
T 3qhy_B          157 K-NGGVIAWGDNYFGQT--T----VPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPT----EALSGVS  222 (282)
T ss_dssp             E-TTEEEEEECCTTSTT--S----CCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCG----GGGSSCC
T ss_pred             E-CCEEEEecCCCCCCC--C----CceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCc----ccCCCce
Confidence            3 799999964421111  1    00111245666665433 22333  59999999754322221111    1123466


Q ss_pred             EEEeeCCEEEEecCCCcEEEEeccCC
Q 046226          334 CLASVANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       334 ~~~~~~~~l~s~~~dg~i~iwd~~~~  359 (434)
                      .++....+.+.-. ||.|+.|=....
T Consensus       223 ~i~~G~~h~~al~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          223 AIASGEWYSLALK-NGKVIAWGSSRT  247 (282)
T ss_dssp             EEEECSSCEEEEE-TTEEEEESTTCC
T ss_pred             EEEcCCCEEEEEE-CCEEEEecCCCC
Confidence            6766555544445 999999976654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.47  E-value=0.069  Score=43.07  Aligned_cols=108  Identities=10%  Similarity=0.016  Sum_probs=64.6

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee------EEEcc--cCccCeEEEEEcCCCeEEEEeCCCeEEEEeccc
Q 046226          195 GPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC------IETIQ--AHSEPINALVVADDGVLYSASDDATVRVWRRYF  266 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~~~~~--~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~  266 (434)
                      ..+.+++|+|++.+.++  .+|.++-.+..+...      -..+-  +-. ...++.|.+++.|..+ .||.|.-++...
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence            36779999998886666  678877777644221      11110  111 2478999999966665 669888776431


Q ss_pred             ccCcc-eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEE
Q 046226          267 YSENQ-LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIH  308 (434)
Q Consensus       267 ~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  308 (434)
                      ..... .......-...-..+..|.+.|+|.+.++.  |+.++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            11110 001111112222467899999999887777  77754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.29  E-value=1.4  Score=38.75  Aligned_cols=178  Identities=11%  Similarity=0.081  Sum_probs=96.9

Q ss_pred             CCCeEEEecCCCc--ee-EeeccC-----CCccEEEEEEeC---C--EEEEEEc---CCeEEEeecCCCCCceeeEeeec
Q 046226          110 DSNVIRIWKQPEF--TE-CGRLKA-----KTSMVVAMEVSH---D--RVYAAYG---DGKIRVWRSTWDNGVKHVKLATI  173 (434)
Q Consensus       110 ~dg~i~iwd~~~~--~~-~~~~~~-----~~~~v~~l~~~~---~--~l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~  173 (434)
                      .+|.|.++|..+.  +. ...+.+     ..-....+.+.+   +  +|+++..   +..|.+|+++......... ...
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~-~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL-KTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE-EEE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEE-ecc
Confidence            6899999998732  21 111222     123556666644   1  4555533   4567777765433221110 000


Q ss_pred             cCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-----------------cCCcEEEEEcCCCeeEEEcccCc
Q 046226          174 PKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-----------------LDKTIKVWRIRDSKCIETIQAHS  236 (434)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-----------------~dg~i~vwd~~~~~~~~~~~~~~  236 (434)
                      .                ...-...+++.+.++|.+.++..                 ..|.|..+|.  ++ +..+...-
T Consensus       160 ~----------------g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l  220 (355)
T 3sre_A          160 R----------------HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGF  220 (355)
T ss_dssp             C----------------CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEE
T ss_pred             c----------------cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCC
Confidence            0                01234678999999998776653                 1245555554  33 22232333


Q ss_pred             cCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCC-CeEEEEE
Q 046226          237 EPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTD-GYIHYWH  311 (434)
Q Consensus       237 ~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~i~d  311 (434)
                      ..-+.++|+||+  ++++-+..+.|..|++...  ... .....+ ......-.+++++ +|++.+++..+ +.|..|+
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~--g~l-~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHAN--WTL-TPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT--SCE-EEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCC--CcE-ecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence            467899999999  4455556789999998621  111 111122 1235677889998 58877755433 3444444

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.18  E-value=1.3  Score=37.65  Aligned_cols=225  Identities=13%  Similarity=0.107  Sum_probs=119.8

Q ss_pred             cEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe
Q 046226          134 MVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS  213 (434)
Q Consensus       134 ~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  213 (434)
                      .|..++......+.-. ||.|..|-......+...                      ......|..++..... .++. .
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p----------------------~~~~~~i~~ia~G~~h-s~~l-~   79 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP----------------------AATQSGVDAIAAGNYH-SLAL-K   79 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC----------------------GGGGSCCCEEEECSSE-EEEE-E
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC----------------------ccCCCCEEEEEeCCCE-EEEE-E
Confidence            5777877777444446 999999976543322210                      0123356677664332 2333 4


Q ss_pred             cCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec
Q 046226          214 LDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL  293 (434)
Q Consensus       214 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  293 (434)
                       ||.|+.|-....-.+..-..-...|..++......++ -. ||.|..|-......  ..    ........|..++...
T Consensus        80 -~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~a-l~-~G~v~~wG~n~~gq--lg----~~~~~~~~i~~i~~G~  150 (282)
T 3qhy_B           80 -DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYA-LK-DGKVIAWGDDSDGQ--TT----VPAEAQSGVTALDGGV  150 (282)
T ss_dssp             -TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEE-EE-TTEEEEEECCTTST--TS----CCGGGGSSEEEEEECS
T ss_pred             -CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEE-Ee-CCeEEEecCCCCCc--CC----CCccCCCCeEEEEccc
Confidence             8999999765422111111113467778776554333 34 89999996442111  11    0111234566665543


Q ss_pred             CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecccc
Q 046226          294 DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG  373 (434)
Q Consensus       294 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  373 (434)
                      +  +.+.-. ||.|+.|-..........    ..-...|..++....+.+.- .||.|+.|-.....+.-   .-.....
T Consensus       151 ~--~~~~l~-~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg---~p~~~~~  219 (282)
T 3qhy_B          151 Y--TALAVK-NGGVIAWGDNYFGQTTVP----AEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTT---VPTEALS  219 (282)
T ss_dssp             S--EEEEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTC---CCGGGGS
T ss_pred             C--EEEEEE-CCEEEEecCCCCCCCCCc----eecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCC---CCcccCC
Confidence            2  333334 799999975432221111    11124577777766655555 69999999765542211   0011123


Q ss_pred             ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          374 PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       374 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      .|..++.-..          ..++. . ||.|+.|--....+
T Consensus       220 ~v~~i~~G~~----------h~~al-~-~g~v~~wG~n~~gq  249 (282)
T 3qhy_B          220 GVSAIASGEW----------YSLAL-K-NGKVIAWGSSRTAP  249 (282)
T ss_dssp             SCCEEEECSS----------CEEEE-E-TTEEEEESTTCCCC
T ss_pred             CceEEEcCCC----------EEEEE-E-CCEEEEecCCCCcc
Confidence            4666665433          22333 3 99999998776544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.04  E-value=2.9  Score=36.78  Aligned_cols=205  Identities=12%  Similarity=0.043  Sum_probs=104.1

Q ss_pred             cccEEEEEE--cCCEEEEEeCCCeEEEecCCCce-eEeecc---CCCccEEEEEEeCC-----EEEEEEc----C----C
Q 046226           92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT-ECGRLK---AKTSMVVAMEVSHD-----RVYAAYG----D----G  152 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~l~~~~~-----~l~~~s~----d----g  152 (434)
                      -..-..|+|  +|+ |+++..+|.|++++ .+++ .+..+.   ........|+++|+     .|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            345678888  565 55566679999997 3444 222221   22356889999985     6666543    2    5


Q ss_pred             eEEEeecCCCC-CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-------------CCcE
Q 046226          153 KIRVWRSTWDN-GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-------------DKTI  218 (434)
Q Consensus       153 ~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------------dg~i  218 (434)
                      .|..|+..... .....+            .+.........|  ....|+|.|||.++++.+.             .|.|
T Consensus       106 ~v~r~~~~~~~~~~~~~~------------~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I  171 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVK------------TLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKI  171 (354)
T ss_dssp             EEEEEEECSSSCCEEEEE------------EEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEE
T ss_pred             EEEEEEECCCCcCcCccE------------EEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEE
Confidence            66666655331 111110            000000000123  3467999999987766442             2456


Q ss_pred             EEEEcCCC---------eeEEEcccCccCeEEEEEcC-CCeEEEEeCCC----eEEEEecccc------cC----cceeE
Q 046226          219 KVWRIRDS---------KCIETIQAHSEPINALVVAD-DGVLYSASDDA----TVRVWRRYFY------SE----NQLHT  274 (434)
Q Consensus       219 ~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg----~i~iwd~~~~------~~----~~~~~  274 (434)
                      .-++....         ..+.. .++. ....++|.+ ++.|+++....    .|.+...-..      ..    .....
T Consensus       172 ~ri~~dG~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~  249 (354)
T 3a9g_A          172 LRVDEEGRPPADNPFPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVD  249 (354)
T ss_dssp             EEECTTSCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred             EEEcCCCCCCCCCCCCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcC
Confidence            55555321         01111 1232 345899999 56555544322    2333221000      00    00011


Q ss_pred             EEEEecccccCeEEEEEe-------cCCCEEEEEcCCCeEEEEEcCc
Q 046226          275 LILTLTAKYSPVKTLTLT-------LDDGLLYGGCTDGYIHYWHKGW  314 (434)
Q Consensus       275 ~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~  314 (434)
                      ....+.........++|.       .+|.++++.-..+.|...++..
T Consensus       250 p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          250 PVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             CSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            112221122356778873       4677777777778888888764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.96  E-value=2.2  Score=41.69  Aligned_cols=150  Identities=8%  Similarity=0.000  Sum_probs=77.5

Q ss_pred             CCCEEEEEecC------CcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCCC--eEEEEecccccCccee
Q 046226          205 SDDTLYSASLD------KTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDDA--TVRVWRRYFYSENQLH  273 (434)
Q Consensus       205 ~~~~l~s~~~d------g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~  273 (434)
                      ++..++.|+.+      ..+.+||..+.+-  +..+...... .+++...++ +++.|+.++  .+.+||+.    ...+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~----t~~W  525 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVT----EEIF  525 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETT----TTEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECC----CCce
Confidence            67777777654      3588899887542  2222211122 233332245 777777654  68888876    1223


Q ss_pred             EEEEE---ecccccCeEEEEEecC-CCEEEEEcC--C-----CeEEEEEcCcccc----cccccCcc-cCcccceEEEEe
Q 046226          274 TLILT---LTAKYSPVKTLTLTLD-DGLLYGGCT--D-----GYIHYWHKGWFSA----QLQYGGAL-QGHTHAVMCLAS  337 (434)
Q Consensus       274 ~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~----~~~~~~~~-~~~~~~v~~~~~  337 (434)
                      .....   ..........+.+..+ +.+++.|+.  +     ..+.+||+....-    .+...... ........+...
T Consensus       526 ~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~  605 (695)
T 2zwa_A          526 KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI  605 (695)
T ss_dssp             EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE
T ss_pred             EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe
Confidence            32221   1111122233555554 566777765  2     4688999875541    01111110 011112234455


Q ss_pred             e-CCEEEEecCC--------CcEEEEeccCC
Q 046226          338 V-ANYVISGSAD--------STSRVWAREQD  359 (434)
Q Consensus       338 ~-~~~l~s~~~d--------g~i~iwd~~~~  359 (434)
                      . +.+++.|+.+        ..+.+||+.+.
T Consensus       606 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          606 TPRKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             ETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             CCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            6 7777777743        46899999875

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=93.84  E-value=2.3  Score=43.10  Aligned_cols=100  Identities=14%  Similarity=0.143  Sum_probs=57.1

Q ss_pred             cEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecc--ccccCcCCCeEEEEEecCCCEEEE
Q 046226          134 MVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK--DKMMKHMGPITSIAINVSDDTLYS  211 (434)
Q Consensus       134 ~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s  211 (434)
                      +..-.+.+++.++++..||.+.-.+-+...............-...++.+....  ..-..-...+.+++..++..++++
T Consensus       173 p~~l~av~~~~l~Vsl~dGgLlrl~r~~~~~~~~~~~f~~~s~~~sl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lft  252 (950)
T 4gq2_M          173 PDLMAAISTSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTIISMIFLSTYNVLVM  252 (950)
T ss_dssp             EEEEEECSSSEEEEEETTSCEEEEEEETTTTEEEEEEECCCCCCCBCC-------CCSSCCCTTCEEEEEEETTTTEEEE
T ss_pred             ceEEEEEcCCeEEEEECCCCEEEEEecCCCCCcceeeecCCcHHHhhhhhcccccCCCCCCCcceEEEEeecCCCcEEEE
Confidence            444556677888888888776655433332222111111111111222222100  000112345778888888899999


Q ss_pred             EecCCcEEEEEcCCCeeEEEcc
Q 046226          212 ASLDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       212 ~~~dg~i~vwd~~~~~~~~~~~  233 (434)
                      -+.|+++++|++.+++++.+..
T Consensus       253 l~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          253 LSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             EETTCEEEEEETTTTEEEEEEE
T ss_pred             EECCCEEEEEECCCCCeEeeec
Confidence            9999999999999999887753

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.71  E-value=3.3  Score=36.24  Aligned_cols=154  Identities=15%  Similarity=0.137  Sum_probs=82.6

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCcee--Eeec----cCCCccEEEEEEeCC-----EEEEEE--
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTE--CGRL----KAKTSMVVAMEVSHD-----RVYAAY--  149 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~--~~~~----~~~~~~v~~l~~~~~-----~l~~~s--  149 (434)
                      +..+...-..-+.|+|  +|+++++--..|.|++++..+++.  +..+    .........|+++|+     .|++.-  
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3334444456789999  777777665589999998655443  2222    123566899999985     454432  


Q ss_pred             -cCCeEEEeecCCCC----CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec----------
Q 046226          150 -GDGKIRVWRSTWDN----GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL----------  214 (434)
Q Consensus       150 -~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----------  214 (434)
                       .++.|.-|.+....    .....            ..+.........|  .-..|+|.|||.++++.+.          
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~------------~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~  169 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAP------------DTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDR  169 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCC------------EEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCT
T ss_pred             CCCCEEEEEEeCCCCcccccCCCc------------EEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCC
Confidence             34455555544321    11000            0111000001123  3567999999987777542          


Q ss_pred             ---CCcEEEEEcCCC---------eeEEEcccCccCeEEEEEcCCCeEEEEe
Q 046226          215 ---DKTIKVWRIRDS---------KCIETIQAHSEPINALVVADDGVLYSAS  254 (434)
Q Consensus       215 ---dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~l~s~~  254 (434)
                         .|.|.-.+....         ..+.. .+|.. ...++|.|++.|.++.
T Consensus       170 ~~~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d  219 (347)
T 3das_A          170 KSLGGKILRMTPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASE  219 (347)
T ss_dssp             TCSTTCEEEECTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEE
T ss_pred             CCCCCEEEEEeCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEe
Confidence               345555555321         11211 13433 4588999988555544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.37  E-value=4  Score=37.37  Aligned_cols=109  Identities=8%  Similarity=0.095  Sum_probs=61.3

Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee--EEEccc------CccCeEEEEEcC----CCeEEEEeC------
Q 046226          194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC--IETIQA------HSEPINALVVAD----DGVLYSASD------  255 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~------~~~~v~~~~~~~----~~~l~s~~~------  255 (434)
                      -.....|+|.|+|+++++-...+.|++++..+++.  +..+..      .......|+++|    ++.|+.+..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34567999999998666654435798888655543  223321      245678999999    454433332      


Q ss_pred             -------CCeEEEEecccccCc--ceeEEEEEecc-cccCeEEEEEecCCCEEEEEc
Q 046226          256 -------DATVRVWRRYFYSEN--QLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       256 -------dg~i~iwd~~~~~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  302 (434)
                             ...|.-|++......  ....+...+.. .......|+|.|||.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   234555554311100  11112212221 123578999999998777644

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.20  E-value=5.6  Score=34.81  Aligned_cols=242  Identities=10%  Similarity=0.016  Sum_probs=119.3

Q ss_pred             CccEEEEEEeCC-EEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---C
Q 046226          132 TSMVVAMEVSHD-RVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---D  206 (434)
Q Consensus       132 ~~~v~~l~~~~~-~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~  206 (434)
                      -..-+.|+|.|+ .++++.. .|.|++++...+.. ..+  ..++             ............|+++|+   +
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v--~~~~-------------~v~~~g~~GllGia~~Pdf~~~   94 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TEL--GEVP-------------GVSPSGEGGLLGIALSPDYASD   94 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE--EECT-------------TCCCBTTBSEEEEEECTTHHHH
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eee--cccC-------------ceeecCCCCceeeEeccccccC
Confidence            345688999998 6666666 89999887543322 111  1110             011124566889999995   4


Q ss_pred             CEEEEE---ecCCcEEEEEcCCC----------eeE-EEcc-cCccCeEEEEEcCCC-eEEEEeC-------------CC
Q 046226          207 DTLYSA---SLDKTIKVWRIRDS----------KCI-ETIQ-AHSEPINALVVADDG-VLYSASD-------------DA  257 (434)
Q Consensus       207 ~~l~s~---~~dg~i~vwd~~~~----------~~~-~~~~-~~~~~v~~~~~~~~~-~l~s~~~-------------dg  257 (434)
                      ..|+..   ..++.|.-|.+..+          +.+ ..+. .....-..|.|.|++ ++++.+.             .|
T Consensus        95 g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G  174 (347)
T 3das_A           95 HMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGG  174 (347)
T ss_dssp             CEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTT
T ss_pred             CEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCC
Confidence            555543   23456666766541          111 1222 112234679999999 4444332             24


Q ss_pred             eEEEEecccc--cCcce-eEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCccccc-c----------c--
Q 046226          258 TVRVWRRYFY--SENQL-HTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQ-L----------Q--  320 (434)
Q Consensus       258 ~i~iwd~~~~--~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~----------~--  320 (434)
                      .|.-.+....  ..... ...+. -.++ .....++|+|+|.+.++-. .|+.=.|.-+.....- +          .  
T Consensus       175 ~IlRi~~dG~ip~~nPf~~~~i~-a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~  252 (347)
T 3das_A          175 KILRMTPDGEPAPGNPFPGSPVY-SYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH  252 (347)
T ss_dssp             CEEEECTTSSBCTTCSSTTCCEE-EBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred             EEEEEeCCCCccCCCCCCCCeEE-eeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence            4444444310  00000 01111 1223 3456889999876555432 2332222222211100 0          0  


Q ss_pred             -ccCcccCcccceEEEEee-CCEEEEecCCCcEEEEeccCCCc-eeeEEEeeccccceeEEEEeecccCCCCCCcccEEE
Q 046226          321 -YGGALQGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGR-HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC  397 (434)
Q Consensus       321 -~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~  397 (434)
                       ....+..+......+++. +..+...-..+.|....+...+. .+....+.+..+.+..|+..|+         |.+++
T Consensus       253 ~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD---------G~lyv  323 (347)
T 3das_A          253 DPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG---------DKLWL  323 (347)
T ss_dssp             CCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET---------TEEEE
T ss_pred             CCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC---------CcEEE
Confidence             000111111245667775 44555555556676666665421 1122234444578899999998         66655


Q ss_pred             Eee
Q 046226          398 TGS  400 (434)
Q Consensus       398 s~~  400 (434)
                      +.+
T Consensus       324 ~td  326 (347)
T 3das_A          324 VTS  326 (347)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            543

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=92.12  E-value=6.2  Score=35.19  Aligned_cols=257  Identities=11%  Similarity=0.082  Sum_probs=132.9

Q ss_pred             cEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe
Q 046226          134 MVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS  213 (434)
Q Consensus       134 ~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  213 (434)
                      .|..++......++...||.|..|-......+..-      .. ..... .....  .-....+..++++......+.-.
T Consensus        54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g------~~-~~~~~-p~~v~--~~~~~~~~~v~i~~G~~h~~al~  123 (389)
T 3kci_A           54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIG------GT-ESVST-PTLLE--SIQHVFIKKVAVNSGGKHCLALS  123 (389)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSS------SS-CCEEE-EEECG--GGTTSCEEEEEECTTCSEEEEEE
T ss_pred             ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCC------Cc-CCccC-CEEcc--cccCCceeEEEECcCCCeEEEEc
Confidence            46677766677777888999999964432111100      00 00000 00000  01223455566666667777778


Q ss_pred             cCCcEEEEEcCCC-----------eeEEEccc-CccCeEEEEEcCCCeEEEEeCCCeEEEEeccccc------CcceeEE
Q 046226          214 LDKTIKVWRIRDS-----------KCIETIQA-HSEPINALVVADDGVLYSASDDATVRVWRRYFYS------ENQLHTL  275 (434)
Q Consensus       214 ~dg~i~vwd~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~  275 (434)
                      .||.|+.|-....           .....+.. ....|..++.... ..++...||.|..|=.....      ......+
T Consensus       124 ~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p  202 (389)
T 3kci_A          124 SEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA-HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP  202 (389)
T ss_dssp             TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE
T ss_pred             CCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC-eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccc
Confidence            8999999965321           01111111 1235666665433 55666789999999543111      0111111


Q ss_pred             EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc-------ccCccc-CcccceEEEEeeCCEEEEecC
Q 046226          276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ-------YGGALQ-GHTHAVMCLASVANYVISGSA  347 (434)
Q Consensus       276 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~-~~~~~v~~~~~~~~~l~s~~~  347 (434)
                      ..........|..++......+.++-..||.|+.|-.........       ....+. .....|..++....+.++-..
T Consensus       203 ~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~  282 (389)
T 3kci_A          203 KLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTK  282 (389)
T ss_dssp             EECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEET
T ss_pred             eEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeC
Confidence            111112223566666544345666777899999996432211100       000000 111246777777777777788


Q ss_pred             CCcEEEEeccCCCc--------eeeEEEeec-cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          348 DSTSRVWAREQDGR--------HTMLAVLVG-HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       348 dg~i~iwd~~~~~~--------~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      ||.|+.|=.....+        ......+.. ....|..++.-           ....+....||.|+.|-...
T Consensus       283 ~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G-----------~~h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          283 SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG-----------SLHCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             TSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC-----------SSEEEEEETTCCEEEEECCT
T ss_pred             CCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec-----------cCeEEEECCCCCEEEeeCCC
Confidence            99999996543110        011111111 12345555554           33555667899999998764

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=89.64  E-value=11  Score=33.89  Aligned_cols=254  Identities=11%  Similarity=0.011  Sum_probs=128.3

Q ss_pred             cEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe
Q 046226          134 MVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS  213 (434)
Q Consensus       134 ~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  213 (434)
                      .|..|+......++...||.|..|-......+..-...   .........       ......|..|+..  ....+.-.
T Consensus        76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~---~~~~~~P~~-------v~~~~~i~~va~G--~~hs~al~  143 (423)
T 3mvd_K           76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSE---DGSESKPDL-------IDLPGKALCISAG--DSHSACLL  143 (423)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCS---TTSSSSCEE-------CCCSSCEEEEEEC--SSEEEEEE
T ss_pred             CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcC---CccccCCeE-------EcCCCCEEEEEcC--cCeEEEEe
Confidence            47788877778888889999999965433221111000   000000000       0122356666543  45556667


Q ss_pred             cCCcEEEEEc--C-CCee---------EEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCc-----------
Q 046226          214 LDKTIKVWRI--R-DSKC---------IETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSEN-----------  270 (434)
Q Consensus       214 ~dg~i~vwd~--~-~~~~---------~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------  270 (434)
                      .||.|+.|-.  . .++.         ..........|..|+.... ..++-..||.|..|=.......           
T Consensus       144 ~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~  222 (423)
T 3mvd_K          144 EDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD-HLVILTTAGKVFTVGCAEQGQLGRLSERSISGE  222 (423)
T ss_dssp             TTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSC
T ss_pred             CCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCC-eEEEEecCCeEEEeeCCcCCccCCCcccccccc
Confidence            7899999975  2 2221         1111112345666665433 5556678899999953211000           


Q ss_pred             ------ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc-------ccCcccCcccceEEEEe
Q 046226          271 ------QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ-------YGGALQGHTHAVMCLAS  337 (434)
Q Consensus       271 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~v~~~~~  337 (434)
                            ....+..........|..++... ...++.-..+|.|+.|-.........       ...........|..++.
T Consensus       223 ~~~~~~~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~  301 (423)
T 3mvd_K          223 GRRGKRDLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG  301 (423)
T ss_dssp             STTTTTTTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE
T ss_pred             cccccccccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc
Confidence                  00011111112223455555442 22333336889999996543211100       00000001235667776


Q ss_pred             eCCEEEEecCCCcEEEEeccCCC---------ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226          338 VANYVISGSADSTSRVWAREQDG---------RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW  408 (434)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw  408 (434)
                      ...+.+.-..||.|+.|=.....         .......+..-...|..|+.-.           ...+.-..||.|+.|
T Consensus       302 G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~-----------~hs~alt~~G~v~~w  370 (423)
T 3mvd_K          302 GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE-----------VCSYAVTIDGKLYSW  370 (423)
T ss_dssp             CSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET-----------TEEEEEETTSCEEEE
T ss_pred             ccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC-----------CeEEEEcCCCCEEEE
Confidence            67777777889999999653211         0111122222223566666553           344455789999999


Q ss_pred             ecCC
Q 046226          409 RVTR  412 (434)
Q Consensus       409 ~~~~  412 (434)
                      -...
T Consensus       371 G~n~  374 (423)
T 3mvd_K          371 GSGV  374 (423)
T ss_dssp             ECCT
T ss_pred             CCCC
Confidence            7654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.38  E-value=9.9  Score=35.52  Aligned_cols=142  Identities=10%  Similarity=-0.019  Sum_probs=78.4

Q ss_pred             CeEEEEEcCCC--eEEEEeCCCeEEEEecccccC-------cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEE
Q 046226          238 PINALVVADDG--VLYSASDDATVRVWRRYFYSE-------NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIH  308 (434)
Q Consensus       238 ~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  308 (434)
                      ....+.++|||  .++++-.+.++.++|+.....       .......... .........+|.++|+...+-.-|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeecceEE
Confidence            34578889999  455555788999999873211       0111112222 2334567889999996666667899999


Q ss_pred             EEEcCccc------ccccccCcccCcccceEEEE-------eeCCEEEEec---CCCcE----------EEEeccCCCce
Q 046226          309 YWHKGWFS------AQLQYGGALQGHTHAVMCLA-------SVANYVISGS---ADSTS----------RVWAREQDGRH  362 (434)
Q Consensus       309 i~d~~~~~------~~~~~~~~~~~~~~~v~~~~-------~~~~~l~s~~---~dg~i----------~iwd~~~~~~~  362 (434)
                      .|++....      ........+.-|-.+-.-.+       .+|++|++..   .|..+          .++|+.. .+.
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-dkM  481 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-DEM  481 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-SSC
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-Cce
Confidence            99986421      11111222223322222221       3467877764   35443          7777754 344


Q ss_pred             eeEEEeeccccceeEEEEe
Q 046226          363 TMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       363 ~~~~~~~~h~~~v~~~~~~  381 (434)
                      +++........+=.++.+.
T Consensus       482 ~lv~D~P~~~EPHda~~v~  500 (638)
T 3sbq_A          482 KLVHDGPTFAEPHDCIMAR  500 (638)
T ss_dssp             EEEEEEEESSCCCCEEEEE
T ss_pred             EEEecCCCCCCCcceEEec
Confidence            6665554444443334333

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=88.28  E-value=11  Score=32.18  Aligned_cols=244  Identities=11%  Similarity=0.080  Sum_probs=119.5

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEe---------eccCCCccEEEEEEeC-CEEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECG---------RLKAKTSMVVAMEVSH-DRVYAAYGDGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~l~~~~-~~l~~~s~dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      ..++++.+.+|.|+--.+.+.+...         .++.+..-+..+..+. +.++..+..|.+.-.....          
T Consensus         3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~e----------   72 (307)
T 1zi0_A            3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ----------   72 (307)
T ss_dssp             CEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGG----------
T ss_pred             CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhH----------
Confidence            4567888999999877665432211         1222222222222232 3777777777755544321          


Q ss_pred             eccCCCCceeEEEeccccccCcCCCeEEEEEe---cCCCEEEEEecCCcEEEEEcCC-------CeeEEEcccCccCeEE
Q 046226          172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN---VSDDTLYSASLDKTIKVWRIRD-------SKCIETIQAHSEPINA  241 (434)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~  241 (434)
                       +|..+....-.......-......|..+...   .++.+++..+.+|.++...+..       +.....+..+ +.+..
T Consensus        73 -lp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~  150 (307)
T 1zi0_A           73 -LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIG  150 (307)
T ss_dssp             -SCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEE
T ss_pred             -CcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEE
Confidence             1111100000000000001233445555432   3466889999999999997742       2222233334 44444


Q ss_pred             EEEc-CCCeEEEEeCCCeEEEEecccccCc---ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226          242 LVVA-DDGVLYSASDDATVRVWRRYFYSEN---QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA  317 (434)
Q Consensus       242 ~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  317 (434)
                      +... .+..++..+.+|.+..++.......   ........+. ....|.++....++..+++.+..|.++-.++.....
T Consensus       151 ~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~  229 (307)
T 1zi0_A          151 VDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPT  229 (307)
T ss_dssp             EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCC
T ss_pred             EEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhcc
Confidence            4443 3447888888999888876522111   1111111222 234566665555566788889999999887743321


Q ss_pred             cc-----cccCcccCcccceEEEEe-e-CCEEEEecCCCcEEEEeccC
Q 046226          318 QL-----QYGGALQGHTHAVMCLAS-V-ANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       318 ~~-----~~~~~~~~~~~~v~~~~~-~-~~~l~s~~~dg~i~iwd~~~  358 (434)
                      ..     .....+....+.+..+.. . ...++..+.+|.+.-++...
T Consensus       230 ~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          230 KSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             CCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             CCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence            11     111112222234443333 2 34555666677666666544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=87.68  E-value=16  Score=33.29  Aligned_cols=106  Identities=14%  Similarity=0.181  Sum_probs=58.3

Q ss_pred             ccEEEEEEeCC-EEEEEEcCC-eEEEeecCCCCCceeeEeeeccCCCCceeEEEecccccc--CcCCCeEEEEEecC---
Q 046226          133 SMVVAMEVSHD-RVYAAYGDG-KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMM--KHMGPITSIAINVS---  205 (434)
Q Consensus       133 ~~v~~l~~~~~-~l~~~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~---  205 (434)
                      ...+.|+|.|+ .++++...+ .|++++...+.. ..+  ..++.             .+.  ........|+|+|+   
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~--~~~~~-------------~~~~~~g~~Gllgia~~Pdf~~   90 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTV--FQVPE-------------IVNDADGQNGLLGFAFHPDFKN   90 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE--EECTT-------------CCCCTTSSCSEEEEEECTTTTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEE--ecCCc-------------cccccCCCCceeEEEECCCcCc
Confidence            35679999998 677777765 688876543321 111  11110             000  13456789999996   


Q ss_pred             CCEEEEEec-------------CCcEEEEEcCCC-------eeEE-Eccc-CccCeEEEEEcCCC-eEEEEe
Q 046226          206 DDTLYSASL-------------DKTIKVWRIRDS-------KCIE-TIQA-HSEPINALVVADDG-VLYSAS  254 (434)
Q Consensus       206 ~~~l~s~~~-------------dg~i~vwd~~~~-------~~~~-~~~~-~~~~v~~~~~~~~~-~l~s~~  254 (434)
                      +..|+....             ...|.-+++...       +.+. .+.. .......|+|.++| ++++.+
T Consensus        91 ~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           91 NPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             SCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            666665542             235666665322       1111 1221 12356899999999 444433

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=86.36  E-value=14  Score=31.08  Aligned_cols=201  Identities=10%  Similarity=0.052  Sum_probs=109.5

Q ss_pred             ccEEEEEE--cCCEEEEEeCCCeEEE---ecCCCceeEeeccCCCccEEEEEEe--C-CEEEEEEcCCeEEEeecCCCCC
Q 046226           93 GQILCIAV--GNGFIYTGSDSNVIRI---WKQPEFTECGRLKAKTSMVVAMEVS--H-DRVYAAYGDGKIRVWRSTWDNG  164 (434)
Q Consensus        93 ~~v~~~~~--~~~~l~tg~~dg~i~i---wd~~~~~~~~~~~~~~~~v~~l~~~--~-~~l~~~s~dg~i~vwd~~~~~~  164 (434)
                      +.+..+..  ..+.|+.-+.+|.++-   |+++.......+. ....|..+...  + ..++.++.+|.++-..+..-. 
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-  101 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-  101 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-
Confidence            34554444  4555666667776654   4544332111133 34556665433  2 389999999999988765432 


Q ss_pred             ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC---------CeeEEEcccC
Q 046226          165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD---------SKCIETIQAH  235 (434)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~  235 (434)
                      ...-        +  ...+.      ....+.+..+........++..+..|.++.+....         |.....+.. 
T Consensus       102 ~~~~--------G--~~~i~------lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-  164 (276)
T 3no0_A          102 YKAQ--------G--MPIIK------LTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-  164 (276)
T ss_dssp             TCST--------T--EECSC------CCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-
T ss_pred             hhcC--------C--eEEEe------cCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-
Confidence            1100        0  00000      01334555555555666888888899988887642         222222332 


Q ss_pred             ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce-eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEE--EE
Q 046226          236 SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL-HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY--WH  311 (434)
Q Consensus       236 ~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i--~d  311 (434)
                      .+.|..+...+++ .++..+..|.++...+........ ..-...+ ...+.+..+....++..++..+.+|.+..  ++
T Consensus       165 ~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~  243 (276)
T 3no0_A          165 NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKIN  243 (276)
T ss_dssp             TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEE
T ss_pred             CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeC
Confidence            3456555544444 888899999999988763322111 1111122 23344554444344456777777888877  77


Q ss_pred             cC
Q 046226          312 KG  313 (434)
Q Consensus       312 ~~  313 (434)
                      ..
T Consensus       244 ~~  245 (276)
T 3no0_A          244 QK  245 (276)
T ss_dssp             GG
T ss_pred             HH
Confidence            54

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.34  E-value=2.4  Score=44.08  Aligned_cols=39  Identities=31%  Similarity=0.468  Sum_probs=32.9

Q ss_pred             CCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226          195 GPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       195 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  233 (434)
                      ..+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus       238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            345666777888999999999999999999999988754

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=84.87  E-value=20  Score=31.72  Aligned_cols=193  Identities=9%  Similarity=0.032  Sum_probs=89.4

Q ss_pred             CCEEEEEeCCCeEEEecCC---CceeEeeccCCCccEEEEEEeC---CEEEEEEcCC----eEEEeecCCCCCceeeEee
Q 046226          102 NGFIYTGSDSNVIRIWKQP---EFTECGRLKAKTSMVVAMEVSH---DRVYAAYGDG----KIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~~---~~l~~~s~dg----~i~vwd~~~~~~~~~~~~~  171 (434)
                      ...|+.|...|.+++-+-.   +.+..... .....|.+|++.|   +.+++++..|    .|...+ +.++....+...
T Consensus        22 ~g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~   99 (394)
T 3b7f_A           22 PVMLLVATIKGAWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP   99 (394)
T ss_dssp             CCEEEEEETTEEEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred             CCEEEEEecCceEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence            4467777777744333221   22322211 2245699999987   3677777665    343321 222221111100


Q ss_pred             -eccCCCCceeEEEeccccccCcCCCeEEEEEecC--CCEEEEEecCCcEEEEEcCCCeeEEEccc--------------
Q 046226          172 -TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS--DDTLYSASLDKTIKVWRIRDSKCIETIQA--------------  234 (434)
Q Consensus       172 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------------  234 (434)
                       .++..  ...       ........|.++++.|.  ...|+++...+.|...+- .++.-..+..              
T Consensus       100 ~~~~~~--~~~-------~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~  169 (394)
T 3b7f_A          100 PAFNKA--PEG-------ETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGE  169 (394)
T ss_dssp             CCCCCC--C-----------CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC
T ss_pred             ccCCCc--ccc-------cccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCcccccccccc
Confidence             00000  000       00002235788888862  566777766666665532 2332222211              


Q ss_pred             -----CccCeEEEEEcCC--CeEEEEeCCCeEEEEecccccCcceeEEEEE-eccc---------ccCeEEEEEecC-CC
Q 046226          235 -----HSEPINALVVADD--GVLYSASDDATVRVWRRYFYSENQLHTLILT-LTAK---------YSPVKTLTLTLD-DG  296 (434)
Q Consensus       235 -----~~~~v~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~---------~~~v~~~~~~~~-~~  296 (434)
                           ....+.+|.+.|.  +.++.+..++.|...+    ........... ....         ...+..+.++|. ..
T Consensus       170 ~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~----DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~  245 (394)
T 3b7f_A          170 QDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST----DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPD  245 (394)
T ss_dssp             ----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES----STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTT
T ss_pred             ccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC----CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCC
Confidence                 1235788999873  3555555555444332    11122222110 0000         134788999885 46


Q ss_pred             EEEEEcCCCeEEEEE
Q 046226          297 LLYGGCTDGYIHYWH  311 (434)
Q Consensus       297 ~l~~~~~dg~i~i~d  311 (434)
                      .|+++...+ |...+
T Consensus       246 ~l~vg~~~g-l~~s~  259 (394)
T 3b7f_A          246 ILYQQNHCG-IYRMD  259 (394)
T ss_dssp             EEEEEETTE-EEEEE
T ss_pred             EEEEEcCCe-EEEeC
Confidence            677776554 44443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.63  E-value=24  Score=32.29  Aligned_cols=109  Identities=10%  Similarity=0.012  Sum_probs=60.8

Q ss_pred             CCeEEEEEecCCC-EEEEEecCCcEEEEEcCCC---eeEEEccc---------CccCeEEEEEcCC----C-eEEEEeC-
Q 046226          195 GPITSIAINVSDD-TLYSASLDKTIKVWRIRDS---KCIETIQA---------HSEPINALVVADD----G-VLYSASD-  255 (434)
Q Consensus       195 ~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~---~~~~~~~~---------~~~~v~~~~~~~~----~-~l~s~~~-  255 (434)
                      ...+.|+|.|++. .|+++...|.|++++....   ..+..+..         .......|+++|+    + ++++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4568899999986 5666777899999975422   12222211         1456789999996    4 3333221 


Q ss_pred             -C----------CeEEEEeccccc-C---cceeEEEEEec--ccccCeEEEEEecCCCEEEEEcC
Q 046226          256 -D----------ATVRVWRRYFYS-E---NQLHTLILTLT--AKYSPVKTLTLTLDDGLLYGGCT  303 (434)
Q Consensus       256 -d----------g~i~iwd~~~~~-~---~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  303 (434)
                       +          ..|.-|.+.... .   ....+.+....  ........|+|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          134445543110 0   01112222222  22235688999999987766554

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=83.57  E-value=21  Score=30.84  Aligned_cols=163  Identities=9%  Similarity=-0.005  Sum_probs=92.2

Q ss_pred             CCCeEEEEEec---CCCEEEEEecCCcEEEEEcCCC-------eeEEEcccCccCeEEEEE-cCCCeEEEEeCCCeEEEE
Q 046226          194 MGPITSIAINV---SDDTLYSASLDKTIKVWRIRDS-------KCIETIQAHSEPINALVV-ADDGVLYSASDDATVRVW  262 (434)
Q Consensus       194 ~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~dg~i~iw  262 (434)
                      ...|..+...+   +..+++..+.+|.|+...+...       .....++.. +.+..+.. ..+..++..+..|.+..+
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf  172 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRF  172 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEE
Confidence            34555554433   5789999999999999887542       222234433 34444444 334478888889988877


Q ss_pred             ecc--cccC---cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc-----cccCcccCcccce
Q 046226          263 RRY--FYSE---NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL-----QYGGALQGHTHAV  332 (434)
Q Consensus       263 d~~--~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~v  332 (434)
                      ...  ....   .........+. ....|.++...+++..++..+..|.++.-.+.......     .....+......+
T Consensus       173 ~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l  251 (327)
T 3uc1_A          173 SATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL  251 (327)
T ss_dssp             ECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred             ECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence            665  2111   11111111222 23456666666666789999999999988865433221     1111221212234


Q ss_pred             EEEE-ee-CCEEEEecCCCcEEEEeccC
Q 046226          333 MCLA-SV-ANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       333 ~~~~-~~-~~~l~s~~~dg~i~iwd~~~  358 (434)
                      ..+. .+ .+.++..+.+|.+.-++...
T Consensus       252 v~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          252 VGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             EEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            3332 33 34666777788877777654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.07  E-value=35  Score=34.61  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=31.6

Q ss_pred             cEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226          134 MVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus       134 ~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      .+.+++..++  .+++.+.|+++|+|++.+++.+....+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~  276 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS  276 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence            5677777776  8999999999999999998887776654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=82.95  E-value=23  Score=30.90  Aligned_cols=50  Identities=10%  Similarity=0.108  Sum_probs=31.1

Q ss_pred             ccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeE---eec----cCCCccEEEEEEeCC
Q 046226           93 GQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTEC---GRL----KAKTSMVVAMEVSHD  143 (434)
Q Consensus        93 ~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~---~~~----~~~~~~v~~l~~~~~  143 (434)
                      ..-..|+|  +|+.|+++...|.|++++.. +...   ..+    .........|+++|+
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence            34678898  67734555668999999853 3321   111    122345789999984

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=81.04  E-value=29  Score=30.74  Aligned_cols=251  Identities=10%  Similarity=0.112  Sum_probs=126.6

Q ss_pred             cEEEEEEcCCEEEEEeCCCeEEEecCCCc-----------eeEeeccC-CCccEEEEEEeC--CEEEEEEcCCeEEEeec
Q 046226           94 QILCIAVGNGFIYTGSDSNVIRIWKQPEF-----------TECGRLKA-KTSMVVAMEVSH--DRVYAAYGDGKIRVWRS  159 (434)
Q Consensus        94 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-----------~~~~~~~~-~~~~v~~l~~~~--~~l~~~s~dg~i~vwd~  159 (434)
                      .|..++......+.-..||.|..|-....           .....+.. ....+..++++.  +..++...||.|..|-.
T Consensus        54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~  133 (389)
T 3kci_A           54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE  133 (389)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred             ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence            46666666666666678899999953221           11111211 222344455543  46677788999999965


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-e----------e
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-K----------C  228 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~----------~  228 (434)
                      .....+..-.      . .. .........  -....|..|+.  .....+.-..||.|+.|-.... +          .
T Consensus       134 n~~GqLG~g~------~-~~-~~~p~~v~~--l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~  201 (389)
T 3kci_A          134 AEDGKLGHGN------R-SP-CDRPRVIES--LRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLK  201 (389)
T ss_dssp             CGGGTTCSSS------C-CC-EEEEEECGG--GTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEE
T ss_pred             CCCCcCCCCC------C-cc-CcCCeEecc--cCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCccccc
Confidence            4321111000      0 00 000000000  01224555554  3455666677899999965321 1          0


Q ss_pred             EEEcc-cCccCeEEEEEcCC-CeEEEEeCCCeEEEEecccccC-----cceeEEEEEecc-cccCeEEEEEecCCCEEEE
Q 046226          229 IETIQ-AHSEPINALVVADD-GVLYSASDDATVRVWRRYFYSE-----NQLHTLILTLTA-KYSPVKTLTLTLDDGLLYG  300 (434)
Q Consensus       229 ~~~~~-~~~~~v~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  300 (434)
                      ...+. .....|..++.... ...+.-..||.|..|-......     ............ ....|..++..  ..+.++
T Consensus       202 p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~a  279 (389)
T 3kci_A          202 PKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVA  279 (389)
T ss_dssp             EEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEE
T ss_pred             ceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEE
Confidence            11111 12345667776542 3666677899999995431111     011111112221 12235555543  345555


Q ss_pred             EcCCCeEEEEEcCcccccc--------cccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226          301 GCTDGYIHYWHKGWFSAQL--------QYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       301 ~~~dg~i~i~d~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      -..+|.|+.|-........        ............|..++....+.++...||.|+.|=...
T Consensus       280 lt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          280 LTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             EETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred             EeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence            5789999999653221100        000000011134677777777777778999999997654

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=80.08  E-value=33  Score=30.67  Aligned_cols=293  Identities=11%  Similarity=0.082  Sum_probs=149.8

Q ss_pred             cccEEEEEEcCCEEEEEeCCCeEEEecCCC-c----------eeEeecc-CCCccEEEEEEeCCEEEEEEcC-CeEEEee
Q 046226           92 DGQILCIAVGNGFIYTGSDSNVIRIWKQPE-F----------TECGRLK-AKTSMVVAMEVSHDRVYAAYGD-GKIRVWR  158 (434)
Q Consensus        92 ~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~-~----------~~~~~~~-~~~~~v~~l~~~~~~l~~~s~d-g~i~vwd  158 (434)
                      ...|..++......+.-..||.|..|-... +          .....+. .....|..++...+..++...| +.|..|-
T Consensus        15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG   94 (406)
T 4d9s_A           15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG   94 (406)
T ss_dssp             CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence            345777777666666667789999994322 1          1112221 1234688888777766656666 4999996


Q ss_pred             cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-e----------
Q 046226          159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-K----------  227 (434)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~----------  227 (434)
                      ......+..-      .... ... .....  .-....|..|+..  ..+.+.-..||.|+.|-.... +          
T Consensus        95 ~n~~GqLG~g------~~~~-~~~-p~~v~--~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~  162 (406)
T 4d9s_A           95 WGDFGRLGHG------NSSD-LFT-PLPIK--ALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSL  162 (406)
T ss_dssp             CCGGGTTCSS------SCCC-EEE-EEECG--GGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEE
T ss_pred             CCCCcCCCCC------CCCc-ccc-ceEec--ccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcc
Confidence            4322111100      0000 000 00000  0122356666653  455666678999999975431 1          


Q ss_pred             eEEEccc-CccCeEEEEEcCCCeEEEEeCCCeEEEEecccccC------cceeEEEEEecccccCeEEEEEecCCCEEEE
Q 046226          228 CIETIQA-HSEPINALVVADDGVLYSASDDATVRVWRRYFYSE------NQLHTLILTLTAKYSPVKTLTLTLDDGLLYG  300 (434)
Q Consensus       228 ~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  300 (434)
                      ....+.. ....|..++.... +.++-..+|.|..|-......      .....+..........|..++.  ...+.++
T Consensus       163 ~p~~v~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~--G~~ht~~  239 (406)
T 4d9s_A          163 VPQKIQAFEGIRIKMVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC--GWRHTIS  239 (406)
T ss_dssp             EEEECGGGTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE--CSSEEEE
T ss_pred             cceEecccCCCcEEEEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE--CCCcEEE
Confidence            1111111 1235666665433 555567899999995331110      1111111111112234555544  3455556


Q ss_pred             EcCCCeEEEEEcCcccccc----------cccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCc---------
Q 046226          301 GCTDGYIHYWHKGWFSAQL----------QYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGR---------  361 (434)
Q Consensus       301 ~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------  361 (434)
                      -..+|.|+.|-........          .....+  ....|..++....+.++-..||.|+.|=.....+         
T Consensus       240 l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~  317 (406)
T 4d9s_A          240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL--SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQ  317 (406)
T ss_dssp             EETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG--TTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCE
T ss_pred             EcCCCCEEEeeCCCCCCCCCCCCcCccccEEeccc--CCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCC
Confidence            6788999999643221110          000111  1234666766667777778899999996543211         


Q ss_pred             eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          362 HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       362 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      ..+..........|..++.-           ....+.-..||.|+.|=-..
T Consensus       318 ~~p~~v~~~~~~~v~~va~G-----------~~hs~alt~~G~v~~wG~n~  357 (406)
T 4d9s_A          318 CSPVQVRFPDDQKVVQVSCG-----------WRHTLAVTERNNVFAWGRGT  357 (406)
T ss_dssp             EEEEEECCGGGCCEEEEEEC-----------SSEEEEEETTSCEEEEECCT
T ss_pred             ccCEEEeccCCCcEEEEEeC-----------CCeEEEEeCCCCEEEecCCC
Confidence            11111111123356555554           33556667899999998654

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=80.04  E-value=33  Score=30.76  Aligned_cols=249  Identities=10%  Similarity=0.070  Sum_probs=130.7

Q ss_pred             ccEEEEEEcCCEEEEEeCCCeEEEecCCCc-e------------eEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeec
Q 046226           93 GQILCIAVGNGFIYTGSDSNVIRIWKQPEF-T------------ECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS  159 (434)
Q Consensus        93 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-~------------~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~  159 (434)
                      ..|..|+..+...+.-..||.|..|-.... +            ....+. ....|..|+......++...||.|..|-.
T Consensus        75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~wG~  153 (423)
T 3mvd_K           75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFAWGS  153 (423)
T ss_dssp             SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEEeC
Confidence            347788887777777788999999954321 1            011111 23467788877777777889999999975


Q ss_pred             --CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-----------
Q 046226          160 --TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-----------  226 (434)
Q Consensus       160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----------  226 (434)
                        .....+..-      ..... ....    . ......|..|+..  ....+.-..||.|+.|-....           
T Consensus       154 ~~n~~GqlG~~------~~~~~-~~p~----~-~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~  219 (423)
T 3mvd_K          154 FRDSHGNMGLT------IDGNK-RTPI----D-LMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSI  219 (423)
T ss_dssp             EECSSSEEESB------TTBCE-EEEE----E-SSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTT
T ss_pred             CCCCCCCcCcC------CCCCC-ceee----E-ecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCccccc
Confidence              222111100      00000 0000    0 0123356666653  455666677899999964321           


Q ss_pred             ------------eeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccC-----cceeEEEEEecccccCeEEE
Q 046226          227 ------------KCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSE-----NQLHTLILTLTAKYSPVKTL  289 (434)
Q Consensus       227 ------------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~  289 (434)
                                  .+..........|..++......++.-..+|.|..|-......     ................|..+
T Consensus       220 ~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~i  299 (423)
T 3mvd_K          220 SGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHI  299 (423)
T ss_dssp             TSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEE
T ss_pred             ccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEE
Confidence                        1111111122345666655333444446889999995432110     00000111111112356555


Q ss_pred             EEecCCCEEEEEcCCCeEEEEEcCccccc--------ccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226          290 TLTLDDGLLYGGCTDGYIHYWHKGWFSAQ--------LQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ  358 (434)
Q Consensus       290 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~  358 (434)
                      +.  ...+.++-..||.|+.|-.......        ......+..-...|..++....+.++-..||.|+.|=...
T Consensus       300 a~--G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~  374 (423)
T 3mvd_K          300 AG--GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGV  374 (423)
T ss_dssp             EE--CSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCT
T ss_pred             Ec--ccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCC
Confidence            54  3455566678999999964322100        0000011111126777777777777778999999997554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.0 bits (193), Expect = 7e-17
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 23/164 (14%)

Query: 102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRS 159
                +G+     ++W   E           S + A+    +         D   R++  
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIK 219
             D  +                            +  ITS++ + S   L +   D    
Sbjct: 256 RADQELMT--------------------YSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 220 VWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
           VW    +     +  H   ++ L V DDG  + + S D+ +++W
Sbjct: 296 VWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.4 bits (168), Expect = 1e-13
 Identities = 51/320 (15%), Positives = 101/320 (31%), Gaps = 38/320 (11%)

Query: 92  DGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAY 149
             +I  +  G  +  + + S    + IW      +   +  ++S V+    +    Y A 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114

Query: 150 GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTL 209
           G                +V+                   + +       S    + D+ +
Sbjct: 115 GGLDNICSIYNLKTREGNVR-----------------VSRELAGHTGYLSCCRFLDDNQI 157

Query: 210 YSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDATVRVWRRYFYS 268
            ++S D T  +W I   +   T   H+  + +L +A D  L+ S + DA+ ++W      
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW------ 211

Query: 269 ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH 328
           + +      T T   S +  +    +      G  D     +        + Y       
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271

Query: 329 THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE 388
               +  +     +++G  D    VW   +        VL GH   + C +         
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALK---ADRAGVLAGHDNRVSC-LGVT------ 321

Query: 389 TEDEYCTICTGSLDGVLKMW 408
             D+   + TGS D  LK+W
Sbjct: 322 --DDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 5e-10
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE--PINALVVADDG-V 249
           H   I +I    + +   + S D T +++ +R  + + T    +    I ++  +  G +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 250 LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY 309
           L +  DD    VW                L    + V  L +T D   +  G  D ++  
Sbjct: 285 LLAGYDDFNCNVWDA------LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

Query: 310 WH 311
           W+
Sbjct: 339 WN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 32/228 (14%), Positives = 63/228 (27%), Gaps = 18/228 (7%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-GVLY 251
           H+  I ++        L SAS D  + +W    +  +  I   S  +     A     + 
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113

Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH 311
               D    ++       N   +  L     Y                G  T        
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173

Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH 371
               +    + G +   + A           +SG+ D+++++W   +           GH
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDT-----RLFVSGACDASAKLWDVRE---GMCRQTFTGH 225

Query: 372 RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGH 419
              I   I F         +      TGS D   +++ +   +    +
Sbjct: 226 ESDINA-ICF-------FPNGN-AFATGSDDATCRLFDLRADQELMTY 264

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (192), Expect = 8e-17
 Identities = 63/336 (18%), Positives = 112/336 (33%), Gaps = 55/336 (16%)

Query: 92  DGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAY 149
              +  +        + + S+   I++W          LK  T  V  +   H     A 
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 150 GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTL 209
               + +    +                            M  H   ++S++I  + D +
Sbjct: 77  CSADMTIKLWDFQGFECI--------------------RTMHGHDHNVSSVSIMPNGDHI 116

Query: 210 YSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW------ 262
            SAS DKTIK+W ++   C++T   H E +  +    DG ++ S S+D TVRVW      
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 176

Query: 263 --------RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314
                   R      +       +  ++ +  +T         L  G  D  I  W    
Sbjct: 177 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD--V 234

Query: 315 FSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHR 372
            +        L GH + V  +   +   +++S + D T RVW  +       +  L  H 
Sbjct: 235 STGMCLM--TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHE 289

Query: 373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW 408
             +   + F              + TGS+D  +K+W
Sbjct: 290 HFVTS-LDF--------HKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (158), Expect = 2e-12
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 15/230 (6%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS 252
           H  P+T +  +     + SAS D TIKVW         T++ H++ +  +     G L +
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 253 ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312
                +          + Q    I T+      V ++++  +   +     D  I  W  
Sbjct: 76  -----SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 313 GWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWARE--------QDGRHTM 364
                   + G        ++        + S S D T RVW           ++ RH +
Sbjct: 131 QTGYCVKTFTG--HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 365 LAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
             +               G   +++      + +GS D  +KMW V+   
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 8e-07
 Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 22/197 (11%)

Query: 219 KVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL 277
           K W I        +  H  P+  ++      V+ SAS+DAT++VW      + +      
Sbjct: 1   KEW-IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW------DYETGDFER 53

Query: 278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS 337
           TL      V+ ++      LL     D  I  W    F       G    H  + + +  
Sbjct: 54  TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG--HDHNVSSVSIMP 111

Query: 338 VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC 397
             ++++S S D T ++W  +       +    GHR  +R               +   I 
Sbjct: 112 NGDHIVSASRDKTIKMWEVQ---TGYCVKTFTGHREWVRM---------VRPNQDGTLIA 159

Query: 398 TGSLDGVLKMWRVTRPK 414
           + S D  +++W V   +
Sbjct: 160 SCSNDQTVRVWVVATKE 176

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 5/150 (3%)

Query: 13  IRETTPTGTAPSTFLRSISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAA- 71
           +R            LR         S  P S     S  +   +  S    PF  + +  
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 72  GSSSPETSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLK 129
            +      S+  C+ +++  D  +  +    G  FI + +D   +R+W          L 
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286

Query: 130 AKTSMVVAMEVSHD--RVYAAYGDGKIRVW 157
           A    V +++       V     D  ++VW
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 9e-17
 Identities = 64/331 (19%), Positives = 109/331 (32%), Gaps = 37/331 (11%)

Query: 91  KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYG 150
            D  I C+      I +GSD N +++W          L   T  V + ++  + + +   
Sbjct: 16  DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGST 75

Query: 151 DGKIRVWRSTWDNGVKHVKLATIPKTGG----------------AVRNLIVGKDKMMKHM 194
           D  ++VW +     +  +   T                       V ++  G+   +   
Sbjct: 76  DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG 135

Query: 195 GPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSAS 254
                  +      + S + D  +KVW      C+ T+Q H+  + + +  D   + S S
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS-LQFDGIHVVSGS 194

Query: 255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314
            D ++RVW     +           T       T  + L D +L  G  D  +  W    
Sbjct: 195 LDTSIRVWDVETGNCIH--------TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 246

Query: 315 FSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLV--GHR 372
               LQ       H  AV CL    N+VI+ S D T ++W  +       L  L   G  
Sbjct: 247 GQ-CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 305

Query: 373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDG 403
           G +   I           +       GS +G
Sbjct: 306 GVVWR-IRA--------SNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 22/191 (11%), Positives = 62/191 (32%), Gaps = 31/191 (16%)

Query: 82  YRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVS 141
             C+ ++     ++  +      + +GS    IR+W          L    S+   ME+ 
Sbjct: 167 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226

Query: 142 HDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA 201
            + + +   D  +++W       ++ ++                       +        
Sbjct: 227 DNILVSGNADSTVKIWDIKTGQCLQTLQ---------------------GPNKHQSAVTC 265

Query: 202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-----HSEPINALVVADDG-VLYSASD 255
           +  + + + ++S D T+K+W ++  + I  +           +  +  ++   V    S 
Sbjct: 266 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325

Query: 256 DAT----VRVW 262
           + T    + V 
Sbjct: 326 NGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 1e-10
 Identities = 42/254 (16%), Positives = 80/254 (31%), Gaps = 42/254 (16%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS 252
           H   + +  +    + + S S D T+KVW     KC+ T+  H+  + +  + D+ ++  
Sbjct: 15  HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISG 73

Query: 253 ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLY------------- 299
           ++D              + L+    T+   +   K +     D  L              
Sbjct: 74  STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 133

Query: 300 GGCTDGYIHYWHKGWFSAQLQYGGA--------------LQGHTHAVMCLASVANYVISG 345
            G         + G       Y                 LQGHT+ V  L     +V+SG
Sbjct: 134 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSG 193

Query: 346 SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVL 405
           S D++ RVW    D         +     +   +                + +G+ D  +
Sbjct: 194 SLDTSIRVW----DVETGNCIHTLTGHQSLTSGMELKDNI----------LVSGNADSTV 239

Query: 406 KMWRVTRPKSSCGH 419
           K+W +   +     
Sbjct: 240 KIWDIKTGQCLQTL 253

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 42/228 (18%), Positives = 70/228 (30%), Gaps = 54/228 (23%)

Query: 221 WRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLT 280
           WR  + K  + ++ H + +   +      + S SDD T++VW             + TL 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSA------VTGKCLRTLV 54

Query: 281 AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA---------------- 324
                V +  +  +  +         +     G     L    +                
Sbjct: 55  GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 114

Query: 325 ------------------LQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLA 366
                             L GH  AV C+      V+SG+ D   +VW  E     T L 
Sbjct: 115 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET---ETCLH 171

Query: 367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
            L GH   +   + F G            + +GSLD  +++W V    
Sbjct: 172 TLQGHTNRVYS-LQFDGIH----------VVSGSLDTSIRVWDVETGN 208

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 9e-15
 Identities = 52/284 (18%), Positives = 88/284 (30%), Gaps = 33/284 (11%)

Query: 95  ILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKI 154
           + C+   +  I +G   N I+IW +        L   T  V+ ++     +     D  +
Sbjct: 18  VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 77

Query: 155 RVWRSTWDNGVKHVKLATIPKTGGAV-------------------RNLIVGKDKMMKHMG 195
           RVW       +  +                                +      + +    
Sbjct: 78  RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 137

Query: 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD 255
                 ++  D  + SAS D+TIKVW     + + T+  H   I  L    D ++ S S 
Sbjct: 138 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSS 196

Query: 256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWF 315
           D T+R+W     +  ++      L              D+  +  G  DG I  W     
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIRF--------DNKRIVSGAYDGKIKVWDLVAA 248

Query: 316 SAQLQYGGA-----LQGHTHAVMCLASVANYVISGSADSTSRVW 354
                  G      L  H+  V  L      ++S S D T  +W
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 38/223 (17%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY 251
           +    +  +  +  D  + S   D TIK+W     +C   +  H+  +            
Sbjct: 13  ETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC---------L 61

Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH 311
              +   +            ++T  +  T  +     L L  ++G++     D  I  W 
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH 371
               +  +     L GH  AV  +     Y++S S D T +VW          +  L GH
Sbjct: 122 MASPT-DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST---CEFVRTLNGH 177

Query: 372 RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
           +  I C            +     + +GS D  +++W +    
Sbjct: 178 KRGIAC-----------LQYRDRLVVSGSSDNTIRLWDIECGA 209

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 319 LQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC 377
           LQ        +  V CL      ++SG  D+T ++W +          +L GH G + C
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN---TLECKRILTGHTGSVLC 60

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 2e-14
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 26/176 (14%)

Query: 104 FIYTGSDSNVIRIWKQPEFTECGRLKAKTSM-------VVAMEVSHD--RVYAAYGDGKI 154
           +I  GS    +R+W         RL ++          V ++  + D   V +   D  +
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278

Query: 155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL 214
           ++W     N     K                 +   + H   + S+A   +D+ + S S 
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTC----------EVTYIGHKDFVLSVATTQNDEYILSGSK 328

Query: 215 DKTIKVWRIRDSKCIETIQAHSEPINALVVA-------DDGVLYSASDDATVRVWR 263
           D+ +  W  +    +  +Q H   + ++ VA       +  V  + S D   R+W+
Sbjct: 329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 2e-12
 Identities = 54/323 (16%), Positives = 106/323 (32%), Gaps = 25/323 (7%)

Query: 104 FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDN 163
           ++ TG +    ++++  + +   RL   ++     E  +     +       +    +  
Sbjct: 76  YLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY---IRSVCFSP 131

Query: 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK-TIKVWR 222
             K +      +              +++                   +     T+++W 
Sbjct: 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 223 IRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWR-RYFYSENQLHTLILTLT 280
           +R  +C  T+          V   DG  + + S D  VRVW     +   +L +   + T
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 251

Query: 281 AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH--------KGWFSAQLQYGGALQGHTHAV 332
                V ++  T D   +  G  D  +  W+                       GH   V
Sbjct: 252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 311

Query: 333 MCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC-AIAFLGRFGEET 389
           + +A+  N  Y++SGS D     W ++       L +L GHR  +   A+A     G   
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLG--- 365

Query: 390 EDEYCTICTGSLDGVLKMWRVTR 412
             EY    TGS D   ++W+  +
Sbjct: 366 -PEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 44/324 (13%), Positives = 91/324 (28%), Gaps = 19/324 (5%)

Query: 101 GNGFIYTGSDSNVIRIW----KQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIR 155
                     ++   ++     +    E  +    TS+V  ++ S+D    A   +   +
Sbjct: 27  SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQ 86

Query: 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD 215
           V+R +  + V  +   +         N              I S+  +     L + + D
Sbjct: 87  VYRVSDGSLVARLSDDSAANKDPENLNTSSSPS----SDLYIRSVCFSPDGKFLATGAED 142

Query: 216 KTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTL 275
           + I++W I + K +  +Q H + I +L     G    +               +  L   
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL- 201

Query: 276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA---LQGHTHAV 332
               + +           D   +  G  D  +  W         +         GH  +V
Sbjct: 202 ----SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 333 MCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETE 390
             +        V+SGS D + ++W  +     +           +             T 
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 391 DEYCTICTGSLDGVLKMWRVTRPK 414
                I +GS D  +  W      
Sbjct: 318 QNDEYILSGSKDRGVLFWDKKSGN 341

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 15/139 (10%), Positives = 41/139 (29%), Gaps = 21/139 (15%)

Query: 91  KDGQILCIAVGNGFIY---TGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RV 145
           +DGQ +     +  +      + +N          T           V+++  + +   +
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323

Query: 146 YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205
            +   D  +  W                 K+G  +  L  G    +  +      ++   
Sbjct: 324 LSGSKDRGVLFWD---------------KKSGNPLLML-QGHRNSVISVAVANGSSLGPE 367

Query: 206 DDTLYSASLDKTIKVWRIR 224
            +   + S D   ++W+ +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 4e-13
 Identities = 45/392 (11%), Positives = 101/392 (25%), Gaps = 89/392 (22%)

Query: 92  DGQILCIAVGNGFIYTGSDSNVIRIWK-------------QPEFTECGRLKAKTSMVVAM 138
           D  I  ++  N F  + S    +++W                 F     L     +    
Sbjct: 14  DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE 73

Query: 139 EVSHDRVYAAYG--DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGP 196
             + +    A     G +  +R T ++  K V    +      +                
Sbjct: 74  RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM------------KKHS 121

Query: 197 ITSIAINVSDD-----TLYSASLDKTIKVWRIRDSK------------------CIETIQ 233
             ++    S+D      L +  +  T  +W+                        +E+  
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181

Query: 234 AHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL 293
             S+   ++ +++ G++ +  ++ TV++                ++    + ++++  + 
Sbjct: 182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241

Query: 294 DDGLLYGGCTDGYIHYWHK------------GWFSAQLQYGGALQGHTHAVMCLA--SVA 339
              LL                             +   Q       H+  VM L+     
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301

Query: 340 NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL----------------- 382
             + S   D   R W  +       +  L  H   I      L                 
Sbjct: 302 ETLCSAGWDGKLRFWDVK---TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 358

Query: 383 -----GRFGEETEDEYCTICTGSLDGVLKMWR 409
                G       D   ++C   LD  ++ +R
Sbjct: 359 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 33/337 (9%), Positives = 94/337 (27%), Gaps = 52/337 (15%)

Query: 128 LKAKTSMVVAMEVSHDRVYAAYGDGKIRVW-RSTWDNGVKHVKLATIPKTGGAVRNLIVG 186
            KA  + + ++   +    +  GDG ++VW     DN     K  +       + ++ V 
Sbjct: 10  GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 187 KDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD 246
           +                     + + S    +  +RI      + +      +    +  
Sbjct: 70  QA----------IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 119

Query: 247 DGV----------------LYSASDDATVRVWRRY------------FYSENQLHTLILT 278
                              L +     T  +W+ +            +    +L   + +
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179

Query: 279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYI----HYWHKGWFSAQLQYGGALQGHTHAVMC 334
                    ++ ++ + GL+  G  +G +        +  ++ + Q+      ++   + 
Sbjct: 180 PMTPSQFATSVDIS-ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 335 LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC 394
            +   + +      ++       +      +  L       + ++             + 
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298

Query: 395 ----TICTGSLDGVLKMWRVTRPKSSCGHLNKTNGHE 427
               T+C+   DG L+ W V   +     +   N H 
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKE----RITTLNMHC 331

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 324 ALQGHTHAVMCLASVANYVISGSADSTSRVW-AREQDGRHTMLAVLVGHRGPIRCAIAFL 382
           A + H   +  +++  ++ +S S D   +VW  +  D  +                   +
Sbjct: 9   AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 383 GRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416
            +  E    E C + T S  G L  +R+TR   +
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDET 102

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 26/193 (13%), Positives = 63/193 (32%), Gaps = 15/193 (7%)

Query: 83  RCISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVS 141
             + S +        + +   G I TG ++  ++I +                  +M  +
Sbjct: 175 GTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYN----FESQHSMINN 230

Query: 142 HDRVYAAYGDGKIRVWRSTWDNGVKHV------KLATIPKTGGAVRNLIVGKDKMMKHMG 195
            + + +     +  +     D+           +      +     +          H  
Sbjct: 231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 290

Query: 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI----NALVVADDGVLY 251
            + S++ N S +TL SA  D  ++ W ++  + I T+  H + I    + L V + G   
Sbjct: 291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350

Query: 252 SASDDATVRVWRR 264
           +      V+  ++
Sbjct: 351 AEPGVFDVKFLKK 363

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.6 bits (142), Expect = 1e-10
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVVADDG 248
           +        +    + +D + + SLD  I ++ ++   K I+ + AH + +N L+     
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 270

Query: 249 VLYSASDDATVRVWR 263
            L S+  DA ++ W 
Sbjct: 271 TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 42/270 (15%), Positives = 72/270 (26%), Gaps = 40/270 (14%)

Query: 186 GKDKMMK----HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA 241
           G D+++K    H   IT++ +N     L S S D  I  W           Q HS  I +
Sbjct: 1   GHDEVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMH-----QDHSNLIVS 51

Query: 242 LVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV--------------- 286
           L  +      S S D T++V     +       +       ++ V               
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG 111

Query: 287 --------KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA-S 337
                    +    +     Y        +       S                  ++ S
Sbjct: 112 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS 171

Query: 338 VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC 397
            +   I+        +    Q                   +     +   E E E   + 
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 398 TGSLDGVLKMWRVTRPKSSCGHLNKTNGHE 427
           TGSLD  + ++ V RP      +   N H+
Sbjct: 232 TGSLDTNIFIYSVKRPMK---IIKALNAHK 258

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 26/319 (8%), Positives = 76/319 (23%), Gaps = 45/319 (14%)

Query: 92  DGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGD 151
           +  I  + V    + +GS    I  W           +  ++++V+++ S  + Y++   
Sbjct: 13  NKGITALTVNP--LISGSYDGRIMEWSSS-----SMHQDHSNLIVSLDNSKAQEYSSISW 65

Query: 152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS 211
                      +              G     ++  D  +  +   T   I         
Sbjct: 66  DDTLKVNGITKHEFGSQPKVASANNDG--FTAVLTNDDDLLILQSFTGDIIKSVRLNSPG 123

Query: 212 ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQ 271
           +++  +     +   +           +         +    S  +           +  
Sbjct: 124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM 183

Query: 272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHA 331
                                                   +  F        + +     
Sbjct: 184 GKI------------------------LLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219

Query: 332 VMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETED 391
                   + V +GS D+   +++ ++  +   +  L  H+  +   + +          
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKI--IKALNAHKDGVNN-LLWETP------- 269

Query: 392 EYCTICTGSLDGVLKMWRV 410
              T+ +   D  +K W V
Sbjct: 270 --STLVSSGADACIKRWNV 286

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.5 bits (142), Expect = 2e-10
 Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 9/164 (5%)

Query: 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADDG-VLYS 252
           PI+  A N     +     +  + ++    +K   +  ++ H+  +  +  A D   + +
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 253 ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312
              D    VW     +          +       + +    ++     G     I   + 
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTL----VILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 313 GWFSAQLQYGGALQGHTHAVMCL--ASVANYVISGSADSTSRVW 354
              +         +     V+ L     +  + +GS D   R++
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 43/370 (11%), Positives = 92/370 (24%), Gaps = 55/370 (14%)

Query: 95  ILCIAV--GNGFIYTGSDSNVIRIW--KQPEFTECGRLKAKTSMVVAMEVSHD--RVYAA 148
           I C A       I    +++ + I+     ++ +   LK     V  ++ + D  R+   
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 149 YGDGKIRVWRSTWDNGVKHVKLATIPKTGG--------------------------AVRN 182
             D    VW          + +  I +                                +
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 183 LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINAL 242
             V K         + S+  + +   L + S D   +++     +  E            
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189

Query: 243 VVADDGVLYSASD---DATVRVWRRYFYSENQLHTLILTLTAKYSPVK---------TLT 290
                    S+                   +   T+ L    K   V             
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 249

Query: 291 LTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADST 350
             + +  L     D +   +     + +L +GG L     +     +        + D  
Sbjct: 250 TFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF--QNLDKK 307

Query: 351 SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV 410
           +        G      +   H+  +              + +    CT  +DG + +W V
Sbjct: 308 ASSEGSAAAGA----GLDSLHKNSVSQI-----SVLSGGKAKCSQFCTTGMDGGMSIWDV 358

Query: 411 TRPKSSCGHL 420
              +S+   L
Sbjct: 359 RSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 41/307 (13%), Positives = 76/307 (24%), Gaps = 31/307 (10%)

Query: 135 VVAMEVSHDRVYAAYG--DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK 192
           +     + DR   A    + ++ ++     +G K V++  + +                 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEK---SGNKWVQVHELKE----------------- 49

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS 252
           H G +T +      + + +   D+   VW ++      T+        A  V        
Sbjct: 50  HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 109

Query: 253 ASDDATVRVWRRY-FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH 311
            +  +  RV     F  EN             S V +L    +  LL  G  D     + 
Sbjct: 110 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 169

Query: 312 KGWFSAQLQYGGALQGHTHAVMC----LASVANYVISGSADSTSRVWAREQDGRHTMLAV 367
                 + +      G            +S   +V      +     A         LA 
Sbjct: 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 229

Query: 368 LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC---GHLNKTN 424
                     A   L         E   +  G  D    ++            G L+   
Sbjct: 230 ADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPK 288

Query: 425 GHEYFEL 431
                 L
Sbjct: 289 QSSQRGL 295

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 9e-10
 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG- 248
           +  H   + S+          S   D  +  WR      I      S  + +  ++ D  
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK 319

Query: 249 VLYSASDDATVRVW 262
            + + S D    V+
Sbjct: 320 YIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 5/150 (3%)

Query: 188 DKMMKHMGPITSIAINVSDD---TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVV 244
           D     MG   + + +V+ D          D  I     R ++ I T+  H E + A+ +
Sbjct: 1   DYFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTI 59

Query: 245 ADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD 304
           ++            V+VW    +  N+     L    + + +++  L  D   L  G   
Sbjct: 60  SNPTRHVYTGGKGCVKVW-DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA 118

Query: 305 GYIHYWHKGWFSAQLQYGGALQGHTHAVMC 334
             +  W     + +++            + 
Sbjct: 119 STLSIWDLAAPTPRIKAELTSSAPACYALA 148

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 47/368 (12%), Positives = 89/368 (24%), Gaps = 55/368 (14%)

Query: 52  SLHTSPLSSPRH-PFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAVGNG--FIYTG 108
           S H +     +  PF P A  G   P  +   R I++ L     +  + + N    +YTG
Sbjct: 14  SFHVTADGQMQPVPFPPDALIGPGIPRHA---RQINT-LNHGEVVCAVTISNPTRHVYTG 69

Query: 109 SDSNVIRIW-----KQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDN 163
                +++W                  + + + + ++  D      G     +       
Sbjct: 70  GK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128

Query: 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI 223
               +K                  +                S       S          
Sbjct: 129 PTPRIK-----------------AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171

Query: 224 RDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY 283
             +   +            +  D   L++   D TVR W      + Q H          
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-------FT 224

Query: 284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI 343
           S + +L        L  G     +   H         +           +  A    + +
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL---HESCVLSLKFAYCGKWFV 281

Query: 344 SGSADSTSRVWAREQDGRHTMLAVLVGHRGPIR-CAIAFLGRFGEETEDEYCTICTGSLD 402
           S   D+    W       +            +  C I+   ++          I TGS D
Sbjct: 282 STGKDNLLNAW----RTPYGASIFQSKESSSVLSCDISVDDKY----------IVTGSGD 327

Query: 403 GVLKMWRV 410
               ++ V
Sbjct: 328 KKATVYEV 335

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 5e-09
 Identities = 8/74 (10%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI-ETIQAHSEPINALVVADDG 248
              H   +++I      D +  +  +    ++ +R  K +   I   ++ I ++      
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336

Query: 249 VLYSASDDATVRVW 262
           ++ +   D    + 
Sbjct: 337 LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 6e-09
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS 252
           HM  + +  +   D+ + + + DK I+V+   + K +  +  H   + AL  A  G+L S
Sbjct: 11  HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 253 ASDDATVRVWRRYFYSENQLH 273
            S D TVRVW         + 
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVF 90

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 2e-07
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 231 TIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLT 290
           T++ H   +   +  +D  + + +DD  +RV+             +L L+     V  L 
Sbjct: 7   TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDS------INKKFLLQLSGHDGGVWALK 60

Query: 291 LTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADST 350
                G+L  G TD  +  W          + G         +       Y+++GS D+T
Sbjct: 61  YA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119

Query: 351 SRVW 354
             VW
Sbjct: 120 LHVW 123

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 40/352 (11%), Positives = 87/352 (24%), Gaps = 47/352 (13%)

Query: 91  KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYG 150
               I C+   + ++ TG+D  +IR++         +L      V A++ +H  +  +  
Sbjct: 12  MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS 71

Query: 151 DGKIRVWRSTW----------------------------------DNGVKHVKLATIPKT 176
             +                                          DN +   KL      
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 131

Query: 177 GGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS 236
                              P     +     ++ + S    I V    D+  I    A  
Sbjct: 132 PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM 191

Query: 237 EPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG 296
           + +  L    D +  +  D    R       +  ++  L            T  + L   
Sbjct: 192 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 251

Query: 297 LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAR 356
                 +            +   +       +  A+       N ++SGS ++   ++  
Sbjct: 252 SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNL 310

Query: 357 EQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW 408
                  + A ++     I   + F G+           +     DG   + 
Sbjct: 311 RS--GKLVHANILKDADQIWS-VNFKGK---------TLVAAVEKDGQSFLE 350

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.5 bits (129), Expect = 7e-09
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 2/108 (1%)

Query: 157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK 216
                  G     +      G           K + H G +  +  +     + SAS DK
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260

Query: 217 TIKVWRIRDSKCIETIQAHSEPINAL--VVADDGVLYSASDDATVRVW 262
           TIK+W +   K  +TI   +   +    ++     L S S +  +   
Sbjct: 261 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 10/80 (12%), Positives = 20/80 (25%), Gaps = 2/80 (2%)

Query: 195 GPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV-LYSA 253
           G    +    + D +   +   ++    +      E    HS        +  G    S 
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 254 SDDATVRVWRRYFYSENQLH 273
                VR+W     +     
Sbjct: 77  DVHGNVRIWDTTQTTHILKT 96

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 5/122 (4%)

Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV 249
                 P  S+  +   D               + +   ++ +             D   
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252

Query: 250 LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY 309
           + SAS D T+++W     +     T+           + L +      L     +G+I++
Sbjct: 253 IASASADKTIKIWN--VATLKVEKTI---PVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 310 WH 311
            +
Sbjct: 308 VN 309

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 7/132 (5%)

Query: 134 MVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH 193
            V  +    +    +  DG++ V    +D+       +                 K    
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEF--FDDQGDDYNSSKRFAF-----RCHRLNLKDTNL 250

Query: 194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA 253
             P+ SI  +     LY+A  D  I  W ++  K I+     +E     +   D +L  A
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA 310

Query: 254 SDDATVRVWRRY 265
           + D T +     
Sbjct: 311 TSDDTFKTNAAI 322

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 227 KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSP 285
           + ++  QA  + I+ + +     +L   S D ++ V++   +     +  +L       P
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK---FDIQAKNVDLLQSLRYKHP 58

Query: 286 VKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314
           +       +  L     T           
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 21/224 (9%), Positives = 48/224 (21%), Gaps = 14/224 (6%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA---HSEPINALVVADDG- 248
               I+ I I  S   L   S D ++ V++         +     +  P+      D+  
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 249 -VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYI 307
             +Y  +    +           Q  T            K                    
Sbjct: 70  LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY---------GDDKLIAASW 120

Query: 308 HYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAV 367
               +         G     + ++         + +  ++          Q     +   
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180

Query: 368 LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411
              +       + +  R       E       S+DG + +    
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 36/303 (11%), Positives = 71/303 (23%), Gaps = 14/303 (4%)

Query: 63  HPFNPTAAAGSS-------SPETSSSYRCISSVLKKDGQILCIAV---GNGFIYTGSDSN 112
            P        S          +  +    +   L+    +LC       +  IY G+   
Sbjct: 20  IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79

Query: 113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLAT 172
            I             L    + +    +               +             +A 
Sbjct: 80  EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAV 139

Query: 173 IPKTGGAVRNLIVGKDKMMKHMGPITSIAIN-VSDDTLYSASLDKTIKVWRIRDSKCIET 231
                   +               I  +  + V    L     D           +  + 
Sbjct: 140 KNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV 199

Query: 232 IQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTL 291
                E       + DG +     D     +        + H L L  T    PV ++  
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 292 TLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTS 351
           +     LY   +DG I  W+         +      +  +V+ +A   N +   ++D T 
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK---FNEDSVVKIACSDNILCLATSDDTF 316

Query: 352 RVW 354
           +  
Sbjct: 317 KTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 29/151 (19%)

Query: 92  DGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGD 151
           DG++      +      S         +    +        S  +     H  +Y A  D
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS--IEFSPRHKFLYTAGSD 272

Query: 152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS 211
           G I  W     N     K+                           + + I  SD+ L  
Sbjct: 273 GIISCW-----NLQTRKKIKNFA------------------KFNEDSVVKIACSDNILCL 309

Query: 212 ASLDKTIKVWRIRDSKCIETIQAHSEPINAL 242
           A+ D T K          +TI+ ++  I  +
Sbjct: 310 ATSDDTFKTNA----AIDQTIELNASSIYII 336

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 1e-08
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA---- 245
             + +         +      +   D TI+VW +  SKC++      + +    V     
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306

Query: 246 DDGVLYSASDDATVRVW 262
            +G + S S D T+  +
Sbjct: 307 GNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 8e-06
 Identities = 42/329 (12%), Positives = 79/329 (24%), Gaps = 32/329 (9%)

Query: 93  GQILCIAV---GNGFIYTGSDSNVIRIW-----KQPEFTECGRLKAKTSMVVAMEVSHDR 144
                ++     N   Y    S  +R       K P   +     +     V        
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 145 VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV 204
            Y   GD   +V    W    +   +    K+            +     GPI+ I+ + 
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKS------------EFQVLAGPISDISWDF 125

Query: 205 SDDTL--YSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVW 262
               L       D             +  +  HS+ INA  +     + S +      V 
Sbjct: 126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185

Query: 263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYG 322
                      +                       +    +D  I  +            
Sbjct: 186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245

Query: 323 GALQGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF 381
              +     +  L+ + +    +  AD+T RVW          +      +  +      
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVG 302

Query: 382 LGRFGEETEDEYCTICTGSLDGVLKMWRV 410
           +   G         I + SLDG L  + +
Sbjct: 303 VVATGNG------RIISLSLDGTLNFYEL 325

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.8 bits (119), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI-QAHSEPINALVVADDGVLY 251
           H   IT+++ +    TL+SA  +  I  W I            H+  I  +     G L+
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 252 SASDDATVRVWR 263
           + S D  ++V  
Sbjct: 71  TVSWDDHLKVVP 82

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.1 bits (107), Expect = 4e-06
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 210 YSASLDKTIKVWRIRDSKCIETIQA---HSEPINALVVADDGVLYSASDDATVRVWR 263
            + SLD ++ VW +        I         +N+++  ++  + SA  D+ ++ W 
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 3e-04
 Identities = 31/323 (9%), Positives = 68/323 (21%), Gaps = 39/323 (12%)

Query: 92  DGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRL-KAKTSMVVAMEVSHDRVYAA 148
           +  I  ++       +++      I  W                +M+  ++ +       
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 149 YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT 208
                         +GV   K      +   +   +     +            +    T
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYS 268
               S + +               Q     +  L  A    + +    A +         
Sbjct: 132 EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG 191

Query: 269 ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH 328
              + T                            +   I Y     F             
Sbjct: 192 AFLVAT--------------------------DQSRKVIPYSVANNFELAHTNSWTFHTA 225

Query: 329 THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE 388
             A +  +     + +GS D++  VW   +   H ++         +   I         
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---- 281

Query: 389 TEDEYCTICTGSLDGVLKMWRVT 411
                 TI +   D  +K W V 
Sbjct: 282 ------TIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 227 KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
              +    H++ I AL  + DG  L+SA  +  +  W
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 39

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 12/97 (12%), Positives = 21/97 (21%), Gaps = 5/97 (5%)

Query: 325 LQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
             GH  A+  L+  +    + S  A+     W  +     +       H   I   I   
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSW--DISTGISNRVFPDVHATMITG-IKTT 64

Query: 383 GRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGH 419
            +    T      +      G                
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 101

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.5 bits (116), Expect = 4e-07
 Identities = 33/352 (9%), Positives = 75/352 (21%), Gaps = 40/352 (11%)

Query: 70  AAGSSSPETSSSYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLK 129
            +G+   +     R        D ++            G+              +  + +
Sbjct: 31  VSGTYVLKVPEPLRIRYVRRGGDTKVA--------FIHGTREGDFLGIYDYRTGKAEKFE 82

Query: 130 AKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDK 189
                V AM V  +  +A   + +  +     + G   V   +              +  
Sbjct: 83  ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 142

Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV 249
                                   + + I V+ +   K       +S        AD   
Sbjct: 143 AYGFPLKHGE----------TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 192

Query: 250 LYSASDDATVRVW-RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG---CTDG 305
           LY  S  +      R       ++ +    +           L         G     D 
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252

Query: 306 YIHYWHKGWFSAQLQYGGALQGHTHAV--MCLASVANYVISGSADSTSRVWAREQDGRHT 363
           Y             +    L+              A Y            +  +      
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----- 307

Query: 364 MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415
               +   +  +   +         + D   T+     DG +  + + +P+ 
Sbjct: 308 --RKVTEVKNNLT-DLRL-------SADRK-TVMVRKDDGKIYTFPLEKPED 348

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 13/142 (9%), Positives = 36/142 (25%), Gaps = 24/142 (16%)

Query: 98  IAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVW 157
              G   +      +        ++     L++   +           Y      K  + 
Sbjct: 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL 301

Query: 158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKT 217
           +  +D                      V   K+ +    +T + ++    T+     D  
Sbjct: 302 K--YD----------------------VKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGK 337

Query: 218 IKVWRIRDSKCIETIQAHSEPI 239
           I  + +   +   T++    P+
Sbjct: 338 IYTFPLEKPEDERTVETDKRPL 359

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 18/166 (10%), Positives = 37/166 (22%), Gaps = 3/166 (1%)

Query: 198 TSIAINVSDDTLY--SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD 255
                ++    L+  +      I +      K ++ I        + + A    L     
Sbjct: 22  KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR 81

Query: 256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWF 315
           DA + +   +   E      I       S   +     +D     G           G  
Sbjct: 82  DARIDMIDLW-AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140

Query: 316 SAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGR 361
               Q                      I  S +    +   ++ G+
Sbjct: 141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 17/159 (10%), Positives = 40/159 (25%), Gaps = 11/159 (6%)

Query: 92  DGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGD 151
            G+++              S   +     E                      +  A +  
Sbjct: 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA------DGWRPGGWQQVAYHRA 259

Query: 152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY- 210
                      +  +H   +       A     + K    +    I SI ++  +  L  
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK---FEMGHEIDSINVSQDEKPLLY 316

Query: 211 -SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG 248
             ++ DKT+ +      + + ++         +  AD G
Sbjct: 317 ALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 15/130 (11%), Positives = 40/130 (30%), Gaps = 4/130 (3%)

Query: 136 VAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG 195
            A      R+      GKI     +  +      +  + +   A      G  ++  H  
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259

Query: 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG---VLYS 252
                 +    D     +  + + V   +  + +   +     I+++ V+ D    +   
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYAL 318

Query: 253 ASDDATVRVW 262
           ++ D T+ + 
Sbjct: 319 STGDKTLYIH 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 16/175 (9%), Positives = 36/175 (20%), Gaps = 15/175 (8%)

Query: 92  DGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAY-- 149
           DG +         +   +    + +  +    +                 H+        
Sbjct: 155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214

Query: 150 --GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD 207
              D K     +    G   V L T                +         +   +  D 
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTH----------TQEFADLTELYFTGLRSPKDP 264

Query: 208 TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVW 262
                 L+  +  + ++  K I+                   LY       + V+
Sbjct: 265 NQIYGVLN-RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 10/143 (6%), Positives = 30/143 (20%), Gaps = 25/143 (17%)

Query: 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVV--AMEVSHDRVYAAYGDGKIRVWR 158
                 T                   +  A  + +    +    D         ++  + 
Sbjct: 219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYD 278

Query: 159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTI 218
                           K    ++   +              +A +   D LY       +
Sbjct: 279 ---------------LKQRKLIKAANLD--------HTYYCVAFDKKGDKLYLGGTFNDL 315

Query: 219 KVWRIRDSKCIETIQAHSEPINA 241
            V+     + ++ I+     ++ 
Sbjct: 316 AVFNPDTLEKVKNIKLPGGDMST 338

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 211 SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDATVRVW 262
           + S    I V  +  +K   TI   S P+ A++  D   +Y + +    V + 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSII 59

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 29/224 (12%), Positives = 61/224 (27%), Gaps = 8/224 (3%)

Query: 208 TLY-SASLDKTIKVWRIRDSKCIETIQ--AHSEPINALVVADDG-VLY-SASDDATVRVW 262
           T+Y ++   + I VW +     +   Q       +  +VV+ D   LY     +  V  +
Sbjct: 5   TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 64

Query: 263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYG 322
           R     ++   T         S    ++       ++ G  +       +      +   
Sbjct: 65  R--IAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121

Query: 323 GALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
             ++G         S  N  +   A    R+          ++A        +  A    
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH 181

Query: 383 GRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGH 426
             F    +  YC     S   V ++            L+    +
Sbjct: 182 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 225

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 11/167 (6%), Positives = 38/167 (22%)

Query: 96  LCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIR 155
           L  A     +Y       +   +     E   +++  +   A              G + 
Sbjct: 140 LAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMA 199

Query: 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD 215
               T    +              +             +  +   +  V+     +    
Sbjct: 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY 259

Query: 216 KTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVW 262
             ++ + +  +  I+ +       +  V  D   ++       +  +
Sbjct: 260 NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 6/146 (4%), Positives = 35/146 (23%), Gaps = 23/146 (15%)

Query: 100 VGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS 159
             +    T   + ++ +  +        ++       +  V+  +  A      +  +  
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFD- 266

Query: 160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIK 219
                          +   +++ + +             S+ ++    T++       + 
Sbjct: 267 --------------LEKNASIKRVPLP--------HSYYSVNVSTDGSTVWLGGALGDLA 304

Query: 220 VWRIRDSKCIETIQAHSEPINALVVA 245
            +     +    +        +L   
Sbjct: 305 AYDAETLEKKGQVDLPGNASMSLASV 330

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.73
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.63
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.46
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.26
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.19
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.09
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.05
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.04
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.03
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.0
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.95
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.93
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.75
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.72
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.72
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.66
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.65
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.13
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.11
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.84
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.82
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.77
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.73
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.56
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.4
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.38
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.26
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.25
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.2
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.2
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.08
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.06
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.81
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.72
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.55
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.51
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.45
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.09
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.72
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.66
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.32
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.11
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.93
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.55
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	94.48
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.47
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.88
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.46
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.28
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	92.88
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.32
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.63
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	85.27
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.71

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=305.22  Aligned_cols=283  Identities=15%  Similarity=0.236  Sum_probs=238.0

Q ss_pred             ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCcee-----EeeccCCCccEEEEEEeCC--EEEEEEcC
Q 046226           81 SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTE-----CGRLKAKTSMVVAMEVSHD--RVYAAYGD  151 (434)
Q Consensus        81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~~~~--~l~~~s~d  151 (434)
                      ..+.++++ +|...|+|++|  ++++|++|+ ||.|+|||+.+...     ......|.+.|.+++|+|+  .|++++.|
T Consensus        41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d  118 (337)
T d1gxra_          41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence            44566666 79999999999  899999998 89999999876432     2334578999999999997  89999999


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  231 (434)
                      |.|++||+..........                    +..|...+.+++|+|++.++++++.|+.|++||+.++++...
T Consensus       119 g~i~iwd~~~~~~~~~~~--------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         119 STLSIWDLAAPTPRIKAE--------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             SEEEEEECCCC--EEEEE--------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cccccccccccccccccc--------------------cccccccccccccccccccccccccccccccccccccccccc
Confidence            999999987544322221                    125889999999999999999999999999999999999999


Q ss_pred             cccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEE
Q 046226          232 IQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW  310 (434)
Q Consensus       232 ~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  310 (434)
                      ...|...|.+++|++++ .+++++.|+.|++||++.      ...+.. ..+...|.+++|+|++++|++++.|+.|++|
T Consensus       179 ~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~------~~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~  251 (337)
T d1gxra_         179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE------GRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT------TEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc------ceeecc-cccccceEEEEEcccccccceeccccccccc
Confidence            99999999999999999 999999999999999872      122222 2467899999999999999999999999999


Q ss_pred             EcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCC
Q 046226          311 HKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE  388 (434)
Q Consensus       311 d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  388 (434)
                      |++.....     ....|...|.+++|+  +++|++++.||.|++||+.++   +.+..+ .|.+.|++++|+|+     
T Consensus       252 d~~~~~~~-----~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~---~~~~~~-~~~~~v~~~~~s~d-----  317 (337)
T d1gxra_         252 HVNKPDKY-----QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQS-KESSSVLSCDISVD-----  317 (337)
T ss_dssp             ETTSSCEE-----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE-ECSSCEEEEEECTT-----
T ss_pred             cccccccc-----cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEc-cCCCCEEEEEEeCC-----
Confidence            98755432     334788899999986  669999999999999999987   455444 47889999999998     


Q ss_pred             CCCcccEEEEeecCCeEEEEec
Q 046226          389 TEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       389 ~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                          +++|++|+.||+|+|||+
T Consensus       318 ----~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         318 ----DKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ----SCEEEEEETTSCEEEEEE
T ss_pred             ----CCEEEEEeCCCeEEEEEE
Confidence                899999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-42  Score=304.43  Aligned_cols=281  Identities=22%  Similarity=0.328  Sum_probs=249.3

Q ss_pred             eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC
Q 046226           85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST  160 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~  160 (434)
                      ..+|.||.++|++|+|  ++++|+||+.||+|+|||+.+++.+..+.+|...|.+++|+++  .++++..++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            4578999999999999  8999999999999999999999999999999999999999997  88888999999999977


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN  240 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  240 (434)
                      ........                      .+|...+.++.|+++++.+++++.|+.+++||+++++.+..+..|...+.
T Consensus        90 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  147 (317)
T d1vyhc1          90 GFECIRTM----------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR  147 (317)
T ss_dssp             SSCEEECC----------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             cccccccc----------------------ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcce
Confidence            55443332                      26889999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC--------------------CCEEE
Q 046226          241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD--------------------DGLLY  299 (434)
Q Consensus       241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~  299 (434)
                      ++++++++ +|++++.|+.|++|++.      .......+..+...+.++.++|+                    +.+++
T Consensus       148 ~~~~~~~~~~l~~~~~d~~v~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (317)
T d1vyhc1         148 MVRPNQDGTLIASCSNDQTVRVWVVA------TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL  221 (317)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETT------TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred             eeecccCCCEEEEEeCCCeEEEEeec------cceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE
Confidence            99999999 99999999999999987      33455566778888888888765                    34789


Q ss_pred             EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE
Q 046226          300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC  377 (434)
Q Consensus       300 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~  377 (434)
                      +++.|+.|++||++....    ...+.+|...|.++.++  +++|++|+.||.|++||+.++   +++..+.+|.+.|++
T Consensus       222 ~~~~d~~i~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~V~~  294 (317)
T d1vyhc1         222 SGSRDKTIKMWDVSTGMC----LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTS  294 (317)
T ss_dssp             EEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEE
T ss_pred             eccCCCEEEEEECCCCcE----EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC---cEEEEEcCCCCCEEE
Confidence            999999999999875433    33556899999999885  669999999999999999987   778889999999999


Q ss_pred             EEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      ++|+|+         +++|+||+.||+|+|||
T Consensus       295 ~~~s~~---------~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         295 LDFHKT---------APYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSS---------SSCEEEEETTSEEEEEC
T ss_pred             EEEcCC---------CCEEEEEeCCCeEEEeC
Confidence            999999         89999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-41  Score=307.74  Aligned_cols=297  Identities=22%  Similarity=0.339  Sum_probs=235.6

Q ss_pred             EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeecc------------------CCCccEEEEEEeCC--
Q 046226           86 SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLK------------------AKTSMVVAMEVSHD--  143 (434)
Q Consensus        86 ~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~------------------~~~~~v~~l~~~~~--  143 (434)
                      ....+|.+.|+||+|  +|++||+|+ |+.|+|||+.+++.+..+.                  .|...|.+++|+|+  
T Consensus        56 ~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            344579999999999  899999987 8999999999988776654                  35667999999997  


Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI  223 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  223 (434)
                      .|++|+.||.|++||...++.....                      .+|...|.++++++++..+++++.++.|++||.
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~~~~----------------------~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~  192 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIVMIL----------------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL  192 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEE----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cceeccccccccccccccccccccc----------------------ccccccccccccccccccccccccceeeeeeec
Confidence            8999999999999998766544433                      269999999999999999999999999999999


Q ss_pred             CCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce-eEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226          224 RDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL-HTLILTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      .+.........+...+....+.+++ +|++++.|+.|++||+........ ........+|...|.+++|+|++++|+++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  272 (388)
T d1erja_         193 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  272 (388)
T ss_dssp             TTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEE
Confidence            9988887776555544444444466 899999999999999872221111 11122345678899999999999999999


Q ss_pred             cCCCeEEEEEcCccccccc--------ccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226          302 CTDGYIHYWHKGWFSAQLQ--------YGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       302 ~~dg~i~i~d~~~~~~~~~--------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                      +.||.|++||++.......        .......|...|.+++++  +++|++|+.||.|++||++++   +++..+++|
T Consensus       273 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H  349 (388)
T d1erja_         273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGH  349 (388)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred             ECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEeCC
Confidence            9999999999875443221        112344677889999886  679999999999999999988   788899999


Q ss_pred             ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          372 RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       372 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      .+.|+++++++.   ..+++++.+|+||+.||+|+||+++
T Consensus       350 ~~~V~~~~~~~~---~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         350 RNSVISVAVANG---SSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCEEEEEECSS---CTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCEEEEEEecC---cccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999998754   2455669999999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-40  Score=293.46  Aligned_cols=282  Identities=13%  Similarity=0.135  Sum_probs=235.2

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCce
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVK  166 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~  166 (434)
                      +.+.+.++++  +|+.|+.+. ++.|.+||+.+......+.+|...|.+++|+|+  +|++|+.||.|++||+.......
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            4455566777  888888886 567999999999998999999999999999997  89999999999999998766543


Q ss_pred             eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeEEEEE
Q 046226          167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPINALVV  244 (434)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  244 (434)
                      ...+                    ..|..+|.+++|+|++++|++++.  +..+++|++++++.+..+.+|...|++++|
T Consensus        95 ~~~~--------------------~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~  154 (311)
T d1nr0a1          95 KTTI--------------------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF  154 (311)
T ss_dssp             EEEE--------------------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred             cccc--------------------ccccCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3321                    258999999999999999999875  456999999999999999999999999999


Q ss_pred             cCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc-
Q 046226          245 ADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY-  321 (434)
Q Consensus       245 ~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-  321 (434)
                      +|++  .+++|+.|+.|++||++      ..........|...|.++.|+|+++++++++.|+.|++||+........+ 
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~------~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGP------PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETT------TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             cccceeeeccccccccccccccc------ccccccccccccccccccccCcccccccccccccccccccccccccccccc
Confidence            9988  58899999999999987      34566677889999999999999999999999999999998765433322 


Q ss_pred             --cCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecccc-ceeEEEEeecccCCCCCCcccEE
Q 046226          322 --GGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG-PIRCAIAFLGRFGEETEDEYCTI  396 (434)
Q Consensus       322 --~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l  396 (434)
                        .....+|...|.+++|+  +++|++|+.||.|+|||++++   +++..+..|.. ....+.+.++         +..|
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~~~~~~~~~---------~~~l  296 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIEDQQLGIIWT---------KQAL  296 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGGCEEEEEEC---------SSCE
T ss_pred             ccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCccceEEEEEec---------CCEE
Confidence              12345789999999996  679999999999999999987   77777776654 2233344444         5689


Q ss_pred             EEeecCCeEEEEecC
Q 046226          397 CTGSLDGVLKMWRVT  411 (434)
Q Consensus       397 ~s~~~Dg~v~iw~~~  411 (434)
                      ++++.||.|++||++
T Consensus       297 ~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         297 VSISANGFINFVNPE  311 (311)
T ss_dssp             EEEETTCCEEEEETT
T ss_pred             EEEECCCEEEEEeCC
Confidence            999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-39  Score=291.04  Aligned_cols=289  Identities=17%  Similarity=0.267  Sum_probs=245.8

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEe
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVW  157 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vw  157 (434)
                      .+..++|.||.+.|+||+|  ++++||||+.||+|+|||+.+++.+..+..|...|.+++|+|+  .+++++.|+.+++|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            4567889999999999999  8999999999999999999999999999999999999999997  89999999999999


Q ss_pred             ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc
Q 046226          158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE  237 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  237 (434)
                      +............                  .+.+|.......... .+..+.....+.....++............+..
T Consensus       125 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (340)
T d1tbga_         125 NLKTREGNVRVSR------------------ELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             ESSSSCSCCCEEE------------------EECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSS
T ss_pred             cccccccccccce------------------ecccccccccccccc-cccccccccccccccccccccccccccccccce
Confidence            9876543322211                  112466655555544 456777888899999999988888888888888


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                      .+....+.+.+ .+++++.|+.|++||++      .......+.+|...|.+++|+|++++|++|+.||.|++||++...
T Consensus       186 ~~~~~~~~~~~~~~~~~~~d~~v~i~d~~------~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~  259 (340)
T d1tbga_         186 DVMSLSLAPDTRLFVSGACDASAKLWDVR------EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETT------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             eEeeeccccccceeEEeecCceEEEEECC------CCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc
Confidence            99999999888 99999999999999987      345566778899999999999999999999999999999997654


Q ss_pred             ccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          317 AQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       317 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                      .....  ....+...|.+++|+  +++|++|+.||.|++||+.++   +++..+.+|.++|++++|+|+         +.
T Consensus       260 ~~~~~--~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l~~s~d---------~~  325 (340)
T d1tbga_         260 ELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDD---------GM  325 (340)
T ss_dssp             EEEEE--CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTT---------SS
T ss_pred             ccccc--ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEeCC---------CC
Confidence            43332  334566778888886  679999999999999999987   788899999999999999998         89


Q ss_pred             EEEEeecCCeEEEEe
Q 046226          395 TICTGSLDGVLKMWR  409 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~  409 (434)
                      +|+||+.||.|+|||
T Consensus       326 ~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         326 AVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEETTSCEEEEC
T ss_pred             EEEEEccCCEEEEeC
Confidence            999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.1e-40  Score=287.55  Aligned_cols=290  Identities=13%  Similarity=0.150  Sum_probs=227.7

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeecc-CCCccEEEEEEeCC-EEEEEEcCCeEEEe
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLK-AKTSMVVAMEVSHD-RVYAAYGDGKIRVW  157 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~-~l~~~s~dg~i~vw  157 (434)
                      +...+++.||.++|+|++|  ++++|++|+.||+|++||+++++.+..+. .|...|.+++|+|+ .+++++.|+.+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            4567889999999999999  89999999999999999999999888874 68999999999998 78889999999999


Q ss_pred             ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc
Q 046226          158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE  237 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  237 (434)
                      +...........                   ....+...+.+++|++++..+++++ ++.+.+|+...  .....  ...
T Consensus        82 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~  137 (299)
T d1nr0a2          82 PAGGSGVDSSKA-------------------VANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISY  137 (299)
T ss_dssp             CSSSSSSCTTSC-------------------CEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSS
T ss_pred             ccCCcccccccc-------------------ccccccccccccccccccccccccc-ccccccccccc--ccccc--ccc
Confidence            986543211110                   0014778899999999999877766 67899999543  22222  344


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                      .+.+++++|++ ++++++.||.|++||+..   .  .........|...|.+++|+|++++|++++.|+.|++||+....
T Consensus       138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~---~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  212 (299)
T d1nr0a2         138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSG---A--SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF  212 (299)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEET---T--EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred             cccccccccccccccccccccccccccccc---c--cccccccccccccccccccccccccccccccccccccccccccc
Confidence            67899999999 899999999999999871   1  11222334577899999999999999999999999999986543


Q ss_pred             ccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          317 AQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       317 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                      .. .....+.+|...|.+++|+  +++|++|+.||.|++||++++...........+...|.++.+ ++         +.
T Consensus       213 ~~-~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~---------~~  281 (299)
T d1nr0a2         213 EL-AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LN---------ET  281 (299)
T ss_dssp             EE-SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EE---------TT
T ss_pred             cc-cccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CC---------CC
Confidence            22 2334567899999999986  669999999999999999886443333333334456666655 44         67


Q ss_pred             EEEEeecCCeEEEEecC
Q 046226          395 TICTGSLDGVLKMWRVT  411 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~~~  411 (434)
                      +|++|+.||+|++||+.
T Consensus       282 ~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         282 TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEEETTSCEEEEECC
T ss_pred             EEEEEeCCCEEEEEecc
Confidence            89999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-39  Score=286.87  Aligned_cols=310  Identities=21%  Similarity=0.312  Sum_probs=238.6

Q ss_pred             cceeeeEEEeeccccE-EEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEee
Q 046226           80 SSYRCISSVLKKDGQI-LCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWR  158 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v-~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd  158 (434)
                      ..+++..+|+||.+.| .|++++|++||||+.||+|+|||+.+++++..+.+|...|.+++|+++.+++++.|+.+++|+
T Consensus         4 ~~~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN   83 (342)
T ss_dssp             SCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             CCCCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccc
Confidence            4567788899999987 567789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCceeeEeee-------ccC-------CCCceeEEEeccc--cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 046226          159 STWDNGVKHVKLAT-------IPK-------TGGAVRNLIVGKD--KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR  222 (434)
Q Consensus       159 ~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  222 (434)
                      ..............       ...       ....+........  .............+......+++++.|+.|++||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            87554322221000       000       0000000000000  0000111122233445677899999999999999


Q ss_pred             cCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226          223 IRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      ....+.+..+.+|...+..+.+  ++ .+++++.||.|++||++      ..........|...+.++.++  +++|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~  233 (342)
T d2ovrb2         164 PETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE------TGNCIHTLTGHQSLTSGMELK--DNILVSG  233 (342)
T ss_dssp             GGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT------TCCEEEEECCCCSCEEEEEEE--TTEEEEE
T ss_pred             cccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecc------cceeeeEecccccceeEEecC--CCEEEEE
Confidence            9999999999999887776665  45 89999999999999987      334566777888888888776  4799999


Q ss_pred             cCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEe-----ecccccee
Q 046226          302 CTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVL-----VGHRGPIR  376 (434)
Q Consensus       302 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~h~~~v~  376 (434)
                      +.||.|++||+........+ .....|...+.++.++++++++|+.||.|++||++++   +++..+     .+|.+.|+
T Consensus       234 s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg---~~i~~~~~~~~~~~~~~v~  309 (342)
T d2ovrb2         234 NADSTVKIWDIKTGQCLQTL-QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG---EFIRNLVTLESGGSGGVVW  309 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEEE-CSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC---CEEEEEEECTTGGGTCEEE
T ss_pred             cCCCEEEEEecccccccccc-cccceeeeceeecccCCCeeEEEcCCCEEEEEECCCC---CEEEEEecccCCCCCCCEE
Confidence            99999999998765444332 3344678889999999999999999999999999988   455544     36788999


Q ss_pred             EEEEeecccCCCCCCcccEEEEeecCCe----EEEEecCC
Q 046226          377 CAIAFLGRFGEETEDEYCTICTGSLDGV----LKMWRVTR  412 (434)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~----v~iw~~~~  412 (434)
                      +++|+|+         +.+|++|+.||+    |++||++.
T Consensus       310 ~v~~s~~---------~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         310 RIRASNT---------KLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEECSS---------EEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEECCC---------CCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999         899999999985    99999874

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-38  Score=288.34  Aligned_cols=294  Identities=13%  Similarity=0.170  Sum_probs=228.6

Q ss_pred             cccEEEEEE--cCCEEEEEeCCCeEEEecCCCce--eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc
Q 046226           92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT--ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV  165 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~  165 (434)
                      .++|+|++|  ++++||+|+.||.|+|||..+++  .+..+++|.+.|.+++|+|+  +|++++.|+.|++||+......
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            478999999  89999999999999999997664  66778999999999999987  8999999999999998755433


Q ss_pred             eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee----EEEcccCccCeEE
Q 046226          166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC----IETIQAHSEPINA  241 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~  241 (434)
                      ....                    +.+|...|.+++|+|++++|++|+.|+.|++|+++....    ......|...|.+
T Consensus        87 ~~~~--------------------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          87 PTLV--------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             EEEE--------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             cccc--------------------cccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccc
Confidence            2221                    125889999999999999999999999999999876542    3445568899999


Q ss_pred             EEEcCCC-eEEEEeCCCeEEEEecccccCc------------ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEE
Q 046226          242 LVVADDG-VLYSASDDATVRVWRRYFYSEN------------QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIH  308 (434)
Q Consensus       242 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  308 (434)
                      ++|+|++ +|++|+.|+.|++||+......            ...........|...|.+++|+|++++|++++.|+.|+
T Consensus       147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~  226 (371)
T d1k8kc_         147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC  226 (371)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             ccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcce
Confidence            9999999 9999999999999997632211            11235566678888999999999999999999999999


Q ss_pred             EEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCcee-e---------------------
Q 046226          309 YWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHT-M---------------------  364 (434)
Q Consensus       309 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-~---------------------  364 (434)
                      +||+.....    ...+..|..+|.+++|+  +++|++ +.|+.+++|......... .                     
T Consensus       227 iwd~~~~~~----~~~~~~~~~~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (371)
T d1k8kc_         227 LADADKKMA----VATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF  301 (371)
T ss_dssp             EEEGGGTTE----EEEEECSSCCEEEEEEEETTEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH
T ss_pred             EEeeecccc----eeeeecccccceeeeecCCCCEEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeE
Confidence            999864432    33456788899999886  445554 557887777654321100 0                     


Q ss_pred             ----------------EEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          365 ----------------LAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       365 ----------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                                      ......|.+.|+++++.+...     .....|+|+|.||.|+|||+++.+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~-----~~~~~~~T~g~Dg~v~iW~~~~~~~  363 (371)
T d1k8kc_         302 QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK-----AKCSQFCTTGMDGGMSIWDVRSLES  363 (371)
T ss_dssp             HHCCCCC---------CCCSSSSSSCEEEEEEEESTT-----TSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             ecccceeEEeccccccceecccccCCEEEEEEeCCCC-----cceEEEEEEcCCCeEEEEeCCcChh
Confidence                            000013888999999988621     1124699999999999999976443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-38  Score=281.74  Aligned_cols=286  Identities=17%  Similarity=0.257  Sum_probs=224.8

Q ss_pred             eEEEeecccc-EEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCC
Q 046226           85 ISSVLKKDGQ-ILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWD  162 (434)
Q Consensus        85 ~~~~~~h~~~-v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~  162 (434)
                      ..+|+||.+. |+|++|++++||||+.||+|+|||+.+++.+..+.+|.+.|.+++|+++ .|++++.|+.|++|++...
T Consensus         5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTT
T ss_pred             cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccc
Confidence            4578999887 5789999999999999999999999999999999999999999999987 8999999999999998766


Q ss_pred             CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc----------
Q 046226          163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI----------  232 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------  232 (434)
                      ........                    ..+...+....+.+++.++++++.|+.|++||+.+...+...          
T Consensus        85 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d1nexb2          85 CCTHVFEG--------------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  144 (355)
T ss_dssp             EEEEEECC--------------------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEE
T ss_pred             cccccccc--------------------ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccce
Confidence            44333311                    123445566778889999999999999999999876543222          


Q ss_pred             -------------ccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226          233 -------------QAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL  298 (434)
Q Consensus       233 -------------~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  298 (434)
                                   ..|...+..  +.+++ .++++..|+.|++||+.      ..........+...+.++.+++++.++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (355)
T d1nexb2         145 HTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVA------QMKCLYILSGHTDRIYSTIYDHERKRC  216 (355)
T ss_dssp             SCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETT------TTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred             eccccccceeeeeeeccccccc--cccccceeeeecccceeeeeecc------cccceeeeeccccccccccccccceee
Confidence                         122233333  33445 89999999999999987      334455667788899999999999999


Q ss_pred             EEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEE
Q 046226          299 YGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCA  378 (434)
Q Consensus       299 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~  378 (434)
                      ++++.|+.|++||++....    ...+.+|...|.++++++++|++|+.||.|++||+++..     ..+..|...+.++
T Consensus       217 ~~~~~d~~i~i~d~~~~~~----~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~  287 (355)
T d1nexb2         217 ISASMDTTIRIWDLENGEL----MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-----RKFSYHHTNLSAI  287 (355)
T ss_dssp             EEEETTSCEEEEETTTCCE----EEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCC-----EEEEEECTTCCCC
T ss_pred             ecccccceEEeeecccccc----ccccccccccccccccccceeeeeecccccccccccccc-----eecccccCCceEE
Confidence            9999999999999865433    335668999999999999999999999999999998752     2345677777776


Q ss_pred             EE-eecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          379 IA-FLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       379 ~~-~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      .+ +++         +.+|++| .||.|++||+++++.+.
T Consensus       288 ~~~~~~---------~~~l~~g-~d~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         288 TTFYVS---------DNILVSG-SENQFNIYNLRSGKLVH  317 (355)
T ss_dssp             CEEEEC---------SSEEEEE-ETTEEEEEETTTCCBCC
T ss_pred             EEEcCC---------CCEEEEE-eCCEEEEEECCCCCEEE
Confidence            55 444         5665555 59999999999988653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.6e-37  Score=270.26  Aligned_cols=254  Identities=15%  Similarity=0.125  Sum_probs=207.6

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeE--eeccCCCccEEEEEEeCC--EEEEEEc--
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTEC--GRLKAKTSMVVAMEVSHD--RVYAAYG--  150 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~--~l~~~s~--  150 (434)
                      +...+....+.+|.+.|+|++|  +|++||+|+.||+|+|||+.+.+..  ..+..|...|.+++|+++  .+++++.  
T Consensus        45 ~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~  124 (311)
T d1nr0a1          45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR  124 (311)
T ss_dssp             TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccc
Confidence            4455667778899999999999  8999999999999999999886543  557889999999999997  6777775  


Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE-EEEEecCCcEEEEEcCCCeeE
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT-LYSASLDKTIKVWRIRDSKCI  229 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~  229 (434)
                      +..+++|+++..+....+                      .+|...|.+++|+|++++ |++|+.||.|++||+++++..
T Consensus       125 ~~~~~v~~~~~~~~~~~l----------------------~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~  182 (311)
T d1nr0a1         125 ERFGHVFLFDTGTSNGNL----------------------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK  182 (311)
T ss_dssp             SCSEEEEETTTCCBCBCC----------------------CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred             cccccccccccccccccc----------------------cccccccccccccccceeeecccccccccccccccccccc
Confidence            566999999876554443                      269999999999999885 788999999999999999999


Q ss_pred             EEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEE---EEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226          230 ETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTL---ILTLTAKYSPVKTLTLTLDDGLLYGGCTDG  305 (434)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  305 (434)
                      ..+..|...|+++.++|++ ++++++.|+.|++||+....  .....   .....+|...|.+++|+|++++|++|+.||
T Consensus       183 ~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         183 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccCcccccccccccccccccccccccc--ccccccccccccccccccccccccCCCCCEEEEEeCCC
Confidence            9999999999999999999 99999999999999987211  11110   012235778999999999999999999999


Q ss_pred             eEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEecc
Q 046226          306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWARE  357 (434)
Q Consensus       306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~  357 (434)
                      .|+|||+++.+....+. ....+...+.++.|++++|++++.||.|++||.+
T Consensus       261 ~v~iwd~~t~~~~~~l~-~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         261 TIKIWNVATLKVEKTIP-VGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEETTTTEEEEEEE-CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             eEEEEECCCCcEEEEEE-CCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99999987654332221 1112334667889999999999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=272.05  Aligned_cols=268  Identities=17%  Similarity=0.269  Sum_probs=228.5

Q ss_pred             cccCCCCCCCCCCCCCccCCCCCCCcccceee----------eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226           53 LHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC----------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~  120 (434)
                      .|...+.+..++++++.+++++ ++.++.|+.          .....+|.+.|.+++|  ++++|++|+.||.|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            6889999999999999999987 677887753          2234579999999999  89999999999999999987


Q ss_pred             C--ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCC
Q 046226          121 E--FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGP  196 (434)
Q Consensus       121 ~--~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (434)
                      .  .+....+..|...+.+++|+++  .+++++.|+.|++|++.+.+.....                      ..|...
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~----------------------~~~~~~  185 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF----------------------QGHTDG  185 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----------------------CCCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc----------------------cccccc
Confidence            4  4566778889999999999997  8889999999999999866443332                      258999


Q ss_pred             eEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEE
Q 046226          197 ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTL  275 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~  275 (434)
                      |.+++|++++..+++++.|+.|++||+++++.+..+. |...|.+++|+|++ .+++++.|+.|++||++..      . 
T Consensus       186 v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~------~-  257 (337)
T d1gxra_         186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP------D-  257 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS------C-
T ss_pred             cccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccc------c-
Confidence            9999999999999999999999999999999887775 78899999999999 9999999999999998711      1 


Q ss_pred             EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEE
Q 046226          276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRV  353 (434)
Q Consensus       276 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~i  353 (434)
                      ......|...|.+++|+|++++|++++.||.|++||+........     ..|...|.+++|+  +++|++|+.||.|+|
T Consensus       258 ~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~~s~d~~~l~t~s~D~~I~v  332 (337)
T d1gxra_         258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-----SKESSSVLSCDISVDDKYIVTGSGDKKATV  332 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-----EECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----ccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            124567889999999999999999999999999999876544332     2477889999986  679999999999999


Q ss_pred             Eec
Q 046226          354 WAR  356 (434)
Q Consensus       354 wd~  356 (434)
                      ||+
T Consensus       333 Wdl  335 (337)
T d1gxra_         333 YEV  335 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-36  Score=262.72  Aligned_cols=278  Identities=21%  Similarity=0.356  Sum_probs=226.8

Q ss_pred             eeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCC
Q 046226           84 CISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDN  163 (434)
Q Consensus        84 ~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~  163 (434)
                      .+.....|...|+|++|++++||||+.||+|+|||+.+++.+..+++|...|.+++|+++.|++|+.|+.|++|++..+.
T Consensus         7 ~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC
T ss_pred             EEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccccc
Confidence            34445678899999999999999999999999999999999999999999999999998999999999999999998765


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe---eEEEcccCccCeE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK---CIETIQAHSEPIN  240 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~  240 (434)
                      .....                        .........+.+....++++..++.+.+||.....   ....+..|...+.
T Consensus        87 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  142 (293)
T d1p22a2          87 MLNTL------------------------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  142 (293)
T ss_dssp             EEEEE------------------------CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred             ccccc------------------------cccccccccccccccceeecccccceeEeeccccccccccccccccccccc
Confidence            44433                        11222333455667889999999999999998654   3445567888888


Q ss_pred             EEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc
Q 046226          241 ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ  320 (434)
Q Consensus       241 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  320 (434)
                      ++.+.+. .+++++.|+.|++||++      .......+.++...+..+.++  +.++++++.||.|++||++.....  
T Consensus       143 ~~~~~~~-~~~~~s~d~~i~~~d~~------~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~--  211 (293)
T d1p22a2         143 VVDFDDK-YIVSASGDRTIKVWNTS------TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACL--  211 (293)
T ss_dssp             EEEEETT-EEEEEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE--
T ss_pred             cceeccc-ccccccCCCceeeecCC------CCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceee--
Confidence            8887654 67888999999999987      333455666777778777665  578999999999999998754433  


Q ss_pred             ccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCC------ceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226          321 YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDG------RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC  394 (434)
Q Consensus       321 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  394 (434)
                        ....+|...+.++.+++.+|++|+.||.|++||+....      ...++..+.+|.+.|++++|+           +.
T Consensus       212 --~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d-----------~~  278 (293)
T d1p22a2         212 --RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-----------EF  278 (293)
T ss_dssp             --EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC-----------SS
T ss_pred             --eeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc-----------CC
Confidence              34557888889999999999999999999999976431      225678899999999999985           45


Q ss_pred             EEEEeecCCeEEEEe
Q 046226          395 TICTGSLDGVLKMWR  409 (434)
Q Consensus       395 ~l~s~~~Dg~v~iw~  409 (434)
                      +|+|||.||+|++||
T Consensus       279 ~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         279 QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEECCSSSEEEEEC
T ss_pred             EEEEEecCCEEEEeC
Confidence            899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-36  Score=260.91  Aligned_cols=269  Identities=14%  Similarity=0.180  Sum_probs=214.8

Q ss_pred             eeeeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecC
Q 046226           82 YRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRST  160 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~  160 (434)
                      .++++++.+|.++|++++|+.  |+||+.||+|++||+.++.     ..|...|.+++++++ .+++++.|+++++|++.
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~   75 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGIT   75 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTTCCEEEETTTEEEETTEE
T ss_pred             cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCCeEEEEeecccccccccc
Confidence            467899999999999999964  9999999999999987643     579999999999987 88999999999999874


Q ss_pred             CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE
Q 046226          161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN  240 (434)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  240 (434)
                      ..                             .....+.++++++++..++++. ++.+.+|+..+++.+..+..+ ..+.
T Consensus        76 ~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~  124 (287)
T d1pgua2          76 KH-----------------------------EFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLN-SPGS  124 (287)
T ss_dssp             EE-----------------------------ECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECS-SCEE
T ss_pred             cc-----------------------------ccccceeeeeeccCCceEEEee-cccceeeeccceeeeeecccc-ceee
Confidence            21                             1344577888888877666655 667999999999888877643 3444


Q ss_pred             EEEEcCCC-eEEEEeCC-CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226          241 ALVVADDG-VLYSASDD-ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       241 ~~~~~~~~-~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  318 (434)
                      +  +++++ .+++++.+ +.+++|++.     ...........+...+.+++|+|++.+|++|+.||.|++||+......
T Consensus       125 ~--~~~~~~~~~v~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         125 A--VSLSQNYVAVGLEEGNTIQVFKLS-----DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             E--EEECSSEEEEEETTTSCEEEEETT-----EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             e--eeccCcceeeeccccceeeeeecc-----ccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccc
Confidence            4  44455 56666555 579999976     222223333456778999999999999999999999999998654432


Q ss_pred             ccccCcccCcccceEEEEee------------CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccC
Q 046226          319 LQYGGALQGHTHAVMCLASV------------ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFG  386 (434)
Q Consensus       319 ~~~~~~~~~~~~~v~~~~~~------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  386 (434)
                      .   ..+.+|...|.+++|+            +.+|++|+.|+.|++||++...  ..+..+.+|.+.|++++|+|+   
T Consensus       198 ~---~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~--~~~~~~~~h~~~V~~v~~~~~---  269 (287)
T d1pgua2         198 T---SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETP---  269 (287)
T ss_dssp             E---CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEET---
T ss_pred             c---ccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC--eEEEEeCCCCCCeEEEEECCC---
Confidence            2   3456899999999874            3589999999999999998743  567788899999999999987   


Q ss_pred             CCCCCcccEEEEeecCCeEEEEec
Q 046226          387 EETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       387 ~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                            + .|+|+|.||.|++|++
T Consensus       270 ------~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         270 ------S-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ------T-EEEEEETTSCEEEEEE
T ss_pred             ------C-EEEEEECCCeEEEEEE
Confidence                  4 5899999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-35  Score=259.11  Aligned_cols=285  Identities=16%  Similarity=0.169  Sum_probs=216.5

Q ss_pred             cEEEEEE--cCCEEEEEeCCC-eEEEecCCCc--eeEeeccCC-CccEEEEEEeCC----EEEEEEcCCeEEEeecCCCC
Q 046226           94 QILCIAV--GNGFIYTGSDSN-VIRIWKQPEF--TECGRLKAK-TSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDN  163 (434)
Q Consensus        94 ~v~~~~~--~~~~l~tg~~dg-~i~iwd~~~~--~~~~~~~~~-~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~  163 (434)
                      .+++++|  +++.|+.++.+. .|+.|+....  ..+..+.+| ...|++++|+|+    +|++|+.||+|++||+....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            3567888  788888876554 4677875443  445667777 468999999973    78899999999999987665


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPINA  241 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~  241 (434)
                      .........              ...+..|.++|.+++|++++++|++++.  ++.+++|+.++++++..+.+|...|.+
T Consensus        99 ~~~~~~~~~--------------~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  164 (325)
T d1pgua1          99 ESNSVEVNV--------------KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINA  164 (325)
T ss_dssp             GGTEEEEEE--------------EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEE
T ss_pred             ceeeeeccc--------------ccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccccccc
Confidence            544432211              0112358899999999999999987764  678999999999999999999999999


Q ss_pred             EEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCccccc
Q 046226          242 LVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       242 ~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~  318 (434)
                      ++|++++  ++++++.|+.+++||+.   .............+...|.+++|+|+ +.+|++++.||.|++||++.....
T Consensus       165 ~~~~~~~~~~~~~~~~d~~v~~~d~~---~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         165 CHLKQSRPMRSMTVGDDGSVVFYQGP---PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             EEECSSSSCEEEEEETTTEEEEEETT---TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             ccccccccceEEEeeccccccccccc---ccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc
Confidence            9999988  67889999999999976   12222233344567788999999996 688999999999999998755433


Q ss_pred             ccccCcccCcccc----eEEEEe-eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccc--eeEEEEeecccCCCCCC
Q 046226          319 LQYGGALQGHTHA----VMCLAS-VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP--IRCAIAFLGRFGEETED  391 (434)
Q Consensus       319 ~~~~~~~~~~~~~----v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~~~  391 (434)
                      .    .+.+|...    +.++.+ ++++|++++.|+.|+|||++++   +++..+..|...  +..+++.+..       
T Consensus       242 ~----~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------  307 (325)
T d1pgua1         242 K----YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVATG-------  307 (325)
T ss_dssp             E----ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEEE-------
T ss_pred             c----cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC---CEEEEEEecCCcccCeEEEEEECC-------
Confidence            3    34455544    455554 4789999999999999999987   677776666544  4455555442       


Q ss_pred             cccEEEEeecCCeEEEEec
Q 046226          392 EYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       392 ~~~~l~s~~~Dg~v~iw~~  410 (434)
                       +.+|+++|.||.|++||+
T Consensus       308 -~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         308 -NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             -TTEEEEEETTSCEEEEET
T ss_pred             -CCEEEEEECCCEEEEEEC
Confidence             458999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-34  Score=258.92  Aligned_cols=324  Identities=17%  Similarity=0.291  Sum_probs=241.6

Q ss_pred             CcccccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCce
Q 046226           50 PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFT  123 (434)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~  123 (434)
                      .+++|...+... ..+++..+++++.|.+++.|     +++.++.+|.+.|++++| .+++|++|+.|+.|++|+....+
T Consensus         7 tL~GH~~~vitc-~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~   85 (355)
T d1nexb2           7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC   85 (355)
T ss_dssp             EEECCSSSCEEE-EEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTE
T ss_pred             EECCcCCCcEEE-EEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccc
Confidence            477898776322 34567889999999876665     468899999999999999 78899999999999999999988


Q ss_pred             eEeeccCCCc--cEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeee-------ccCCCCceeEEEeccccccC
Q 046226          124 ECGRLKAKTS--MVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLAT-------IPKTGGAVRNLIVGKDKMMK  192 (434)
Q Consensus       124 ~~~~~~~~~~--~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  192 (434)
                      .......+..  .+....+.++  .+++++.|+.|++||+.............       ...........      ...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  159 (355)
T d1nexb2          86 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV------LRG  159 (355)
T ss_dssp             EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE------EEC
T ss_pred             cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee------eee
Confidence            7766554433  4455566776  78899999999999998765433221100       00000011111      113


Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ  271 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~  271 (434)
                      |...+..  +.+++++++++..|+.|++||+.+++.+.....+...+.++.+++++ .+++++.|+.|++||+.      
T Consensus       160 ~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~------  231 (355)
T d1nexb2         160 HMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE------  231 (355)
T ss_dssp             CSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT------
T ss_pred             ccccccc--cccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecc------
Confidence            5555544  44568999999999999999999999999999999999999999999 99999999999999987      


Q ss_pred             eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce---EEEEeeCCEEEEecCC
Q 046226          272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV---MCLASVANYVISGSAD  348 (434)
Q Consensus       272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~s~~~d  348 (434)
                      .......+.+|...|.+++++  +++|++|+.||.|++||++......      ..|...+   .++..++.++++|+ |
T Consensus       232 ~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~g~-d  302 (355)
T d1nexb2         232 NGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF------SYHHTNLSAITTFYVSDNILVSGS-E  302 (355)
T ss_dssp             TCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE------EEECTTCCCCCEEEECSSEEEEEE-T
T ss_pred             ccccccccccccccccccccc--cceeeeeecccccccccccccceec------ccccCCceEEEEEcCCCCEEEEEe-C
Confidence            344566778899999999886  4799999999999999987554332      2333333   34445566776664 8


Q ss_pred             CcEEEEeccCCCceeeEE-EeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226          349 STSRVWAREQDGRHTMLA-VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV  410 (434)
Q Consensus       349 g~i~iwd~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~  410 (434)
                      |.|++||++++   +++. .+.+|.++|.+++|+|+          .++++++.||+++||.+
T Consensus       303 ~~i~vwd~~tg---~~~~~~~~~~~~~V~~v~~~~~----------~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         303 NQFNIYNLRSG---KLVHANILKDADQIWSVNFKGK----------TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TEEEEEETTTC---CBCCSCTTTTCSEEEEEEEETT----------EEEEEEESSSCEEEEEE
T ss_pred             CEEEEEECCCC---CEEEEEecCCCCCEEEEEEcCC----------eEEEEEECCCcEEEEEE
Confidence            99999999987   4443 46789999999999976          37888999999777654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-35  Score=259.62  Aligned_cols=276  Identities=20%  Similarity=0.307  Sum_probs=245.9

Q ss_pred             CCCcccccCCCCCCCCCCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226           48 SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP  120 (434)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~  120 (434)
                      ...+.+|..++.+..+.+++..+++++.|.+++.|+     ++.++.+|.+.|.++++  ++.+++++..++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            346889999999999999999999999998877764     57889999999999999  89999999999999999999


Q ss_pred             CceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeE
Q 046226          121 EFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT  198 (434)
Q Consensus       121 ~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  198 (434)
                      ..+....+..|...+.++.++++  .+++++.|+.+++||+.++.....+.                      +|...+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----------------------~~~~~~~  147 (317)
T d1vyhc1          90 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT----------------------GHREWVR  147 (317)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE----------------------CCSSCEE
T ss_pred             ccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc----------------------cCCCcce
Confidence            99999999999999999999986  89999999999999998776555443                      5889999


Q ss_pred             EEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC---------------------eEEEEeCCC
Q 046226          199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG---------------------VLYSASDDA  257 (434)
Q Consensus       199 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------~l~s~~~dg  257 (434)
                      +++|++++.+|++++.|+.|++|++.+++.+..+..|...+.++.+++++                     .+++++.|+
T Consensus       148 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  227 (317)
T d1vyhc1         148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  227 (317)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             eeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence            99999999999999999999999999999999999999999999987643                     488999999


Q ss_pred             eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226          258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS  337 (434)
Q Consensus       258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  337 (434)
                      .|++||++      ....+..+.+|...|.+++++|++++|++|+.||.|++||+...+    ....+.+|...|++++|
T Consensus       228 ~i~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~h~~~V~~~~~  297 (317)
T d1vyhc1         228 TIKMWDVS------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----CMKTLNAHEHFVTSLDF  297 (317)
T ss_dssp             EEEEEETT------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC----CCEEEECCSSCEEEEEE
T ss_pred             EEEEEECC------CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc----EEEEEcCCCCCEEEEEE
Confidence            99999987      344566778899999999999999999999999999999986543    33466789999999998


Q ss_pred             e--CCEEEEecCCCcEEEEe
Q 046226          338 V--ANYVISGSADSTSRVWA  355 (434)
Q Consensus       338 ~--~~~l~s~~~dg~i~iwd  355 (434)
                      +  +++|++|+.||.|+|||
T Consensus       298 s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         298 HKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CSSSSCEEEEETTSEEEEEC
T ss_pred             cCCCCEEEEEeCCCeEEEeC
Confidence            6  56999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=257.72  Aligned_cols=289  Identities=19%  Similarity=0.244  Sum_probs=214.4

Q ss_pred             EeCCCeEEEecCCCcee----EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226          108 GSDSNVIRIWKQPEFTE----CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR  181 (434)
Q Consensus       108 g~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      +..++.+.+|+....+.    +....+|.+.|++|+|+|+  +|++|+ |+.|++||+.+++.+..+..........   
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~---  109 (388)
T d1erja_          34 KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP---  109 (388)
T ss_dssp             EECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------
T ss_pred             cCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc---
Confidence            45677888898654322    2233369999999999998  666664 9999999998877665543211110000   


Q ss_pred             EEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEE
Q 046226          182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVR  260 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~  260 (434)
                       ..........|...|.+++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.+++++ .+++++.++.++
T Consensus       110 -~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~  188 (388)
T d1erja_         110 -ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  188 (388)
T ss_dssp             ----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             -cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence             001111223688899999999999999999999999999999999999999999999999999998 999999999999


Q ss_pred             EEecccccCcceeEEEEEecccccCeEEEEEe-cCCCEEEEEcCCCeEEEEEcCcccccccc---cCcccCcccceEEEE
Q 046226          261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLT-LDDGLLYGGCTDGYIHYWHKGWFSAQLQY---GGALQGHTHAVMCLA  336 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~v~~~~  336 (434)
                      +||..      ..........+. ....+.+. +++++|++++.||.|++||+........+   .....+|...|.+++
T Consensus       189 ~~d~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  261 (388)
T d1erja_         189 IWDLR------TGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  261 (388)
T ss_dssp             EEETT------TTEEEEEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             eeecc------cccccccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence            99987      222233333333 44455554 48899999999999999998765443322   123457889999999


Q ss_pred             ee--CCEEEEecCCCcEEEEeccCCCc---------eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeE
Q 046226          337 SV--ANYVISGSADSTSRVWAREQDGR---------HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVL  405 (434)
Q Consensus       337 ~~--~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v  405 (434)
                      ++  +++|++|+.||.|++||+.+...         .........|...|.+++|+|+         +++|++|+.||.|
T Consensus       262 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~sg~~dg~i  332 (388)
T d1erja_         262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN---------DEYILSGSKDRGV  332 (388)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG---------GCEEEEEETTSEE
T ss_pred             ECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCC---------CCEEEEEeCCCEE
Confidence            86  66999999999999999976531         1345566789999999999999         8999999999999


Q ss_pred             EEEecCCCCccc
Q 046226          406 KMWRVTRPKSSC  417 (434)
Q Consensus       406 ~iw~~~~~~~~~  417 (434)
                      ++||+.+++.+.
T Consensus       333 ~vwd~~~~~~~~  344 (388)
T d1erja_         333 LFWDKKSGNPLL  344 (388)
T ss_dssp             EEEETTTCCEEE
T ss_pred             EEEECCCCcEEE
Confidence            999999887643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-34  Score=258.80  Aligned_cols=248  Identities=13%  Similarity=0.095  Sum_probs=202.4

Q ss_pred             CccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEE
Q 046226          132 TSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTL  209 (434)
Q Consensus       132 ~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  209 (434)
                      ..+|+|++|+|+  .|++|+.||.|++||...++.....                    .+.+|.++|.+++|+|++++|
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~--------------------~l~gH~~~V~~l~fsp~~~~l   66 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH--------------------ELKEHNGQVTGVDWAPDSNRI   66 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE--------------------EEECCSSCEEEEEEETTTTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEE--------------------EecCCCCCEEEEEECCCCCEE
Confidence            467999999998  8889999999999998755322211                    112799999999999999999


Q ss_pred             EEEecCCcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCe
Q 046226          210 YSASLDKTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV  286 (434)
Q Consensus       210 ~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  286 (434)
                      ++|+.|+.|++||+.++..  ...+..|...|.+++|+|++ .|++++.|+.|++|++.  ..............|...|
T Consensus        67 ~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~--~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE--QENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE--TTTTEEEEEEECTTCCSCE
T ss_pred             EEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeee--ccccccccccccccccccc
Confidence            9999999999999987653  45566788999999999999 99999999999999987  3333444555667788999


Q ss_pred             EEEEEecCCCEEEEEcCCCeEEEEEcCcccccc--------------cccCcccCcccceEEEEee--CCEEEEecCCCc
Q 046226          287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL--------------QYGGALQGHTHAVMCLASV--ANYVISGSADST  350 (434)
Q Consensus       287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  350 (434)
                      .+++|+|++++|++|+.|+.|++||+.......              .......+|...|.+++|+  +++|++++.|+.
T Consensus       145 ~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~  224 (371)
T d1k8kc_         145 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST  224 (371)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred             ccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc
Confidence            999999999999999999999999976432111              1123345788889998885  679999999999


Q ss_pred             EEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          351 SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      |++||+.++   ..+..+..|..+|.+++|+|+         +.+|++| .|+.+++|......
T Consensus       225 i~iwd~~~~---~~~~~~~~~~~~v~s~~fs~d---------~~~la~g-~d~~~~~~~~~~~~  275 (371)
T d1k8kc_         225 VCLADADKK---MAVATLASETLPLLAVTFITE---------SSLVAAG-HDCFPVLFTYDSAA  275 (371)
T ss_dssp             EEEEEGGGT---TEEEEEECSSCCEEEEEEEET---------TEEEEEE-TTSSCEEEEEETTT
T ss_pred             ceEEeeecc---cceeeeecccccceeeeecCC---------CCEEEEE-cCCceEEEEeeCCC
Confidence            999999987   678888999999999999998         7777765 57888887766543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-34  Score=258.74  Aligned_cols=284  Identities=13%  Similarity=0.136  Sum_probs=201.7

Q ss_pred             eEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCcee------EeeccCCCccEEEEEEe------CC---EEEEEE
Q 046226           85 ISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTE------CGRLKAKTSMVVAMEVS------HD---RVYAAY  149 (434)
Q Consensus        85 ~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~l~~~------~~---~l~~~s  149 (434)
                      ....++|.+.|.++++.+++|+||+.|++|+|||..+...      ......|...+..+...      ..   .+++++
T Consensus         7 ~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3456789999999999889999999999999999765321      22223344444333321      11   567888


Q ss_pred             cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-----CCEEEEEecCCcEEEEEcC
Q 046226          150 GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-----DDTLYSASLDKTIKVWRIR  224 (434)
Q Consensus       150 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s~~~dg~i~vwd~~  224 (434)
                      .||.|++|++................            .....+...+..++|.++     +.++++++.||.|++||+.
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~  154 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDL------------LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH  154 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECC------------SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred             CCCcEEEEEccCCCceeeeeccccce------------eeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEee
Confidence            99999999987655443332211110            011235667788888765     4678999999999999985


Q ss_pred             CCe------------------eEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCe
Q 046226          225 DSK------------------CIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV  286 (434)
Q Consensus       225 ~~~------------------~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  286 (434)
                      ...                  .......+...+.+++|+|+++|++|+.||.|++||+..............+.+|..+|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V  234 (393)
T d1sq9a_         155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  234 (393)
T ss_dssp             SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             cCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceE
Confidence            321                  11122235567899999999999999999999999987222211222233456788999


Q ss_pred             EEEEEecCCCEEEEEcCCC---eEEEEEcCccccccc---------ccCcccCcccceEEEEee--CCEEEEecCCCcEE
Q 046226          287 KTLTLTLDDGLLYGGCTDG---YIHYWHKGWFSAQLQ---------YGGALQGHTHAVMCLASV--ANYVISGSADSTSR  352 (434)
Q Consensus       287 ~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~---------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~  352 (434)
                      .+++|+|++++|++|+.|+   .|++||+........         ....+.+|...|++++|+  +++|++|+.|++|+
T Consensus       235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~  314 (393)
T d1sq9a_         235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  314 (393)
T ss_dssp             EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEE
Confidence            9999999999999999887   599999875443222         223456899999999996  67999999999999


Q ss_pred             EEeccCCCceeeEEEeeccccceeE----EEEeec
Q 046226          353 VWAREQDGRHTMLAVLVGHRGPIRC----AIAFLG  383 (434)
Q Consensus       353 iwd~~~~~~~~~~~~~~~h~~~v~~----~~~~~~  383 (434)
                      |||++++   +++.++.+|.+.|..    ++|+|+
T Consensus       315 vWd~~~g---~~~~~l~gH~~~v~~~~~~~~~~~~  346 (393)
T d1sq9a_         315 FWDVKTK---ERITTLNMHCDDIEIEEDILAVDEH  346 (393)
T ss_dssp             EEETTTT---EEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred             EEECCCC---CEEEEECCcCCcccCCccEEEECCC
Confidence            9999998   899999999877653    455554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-33  Score=249.19  Aligned_cols=280  Identities=19%  Similarity=0.319  Sum_probs=235.1

Q ss_pred             CCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226           46 RFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK  118 (434)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd  118 (434)
                      +..+.+.+|..++.+..+.+++..+++++.|++++.|     +++.++..|.+.|.+++|  +++++++|+.|+.+++|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            3445688999999999999999999999999886655     457889999999999999  899999999999999999


Q ss_pred             CCC----ceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226          119 QPE----FTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH  193 (434)
Q Consensus       119 ~~~----~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
                      ...    ......+.+|...........+ .+.....|.....+............                      .+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~  183 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT----------------------GH  183 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE----------------------CC
T ss_pred             ccccccccccceeccccccccccccccccccccccccccccccccccccccccccc----------------------cc
Confidence            755    3445567788887777776665 78888889999998876443332221                      47


Q ss_pred             CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce
Q 046226          194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL  272 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~  272 (434)
                      ...+....+.+.+.++++|+.|+.|++||+++++++..+.+|...|++++|+|++ +|++|+.|+.|++||++.    ..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~----~~  259 (340)
T d1tbga_         184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA----DQ  259 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----TE
T ss_pred             ceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc----cc
Confidence            7789999999999999999999999999999999999999999999999999999 999999999999999871    12


Q ss_pred             eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCc
Q 046226          273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADST  350 (434)
Q Consensus       273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  350 (434)
                      .........+...+.+++|+|++++|++|+.||.|++||+....    ....+.+|...|.+++|+  +.+|++|+.||.
T Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD----RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCE
Confidence            22233445667789999999999999999999999999986543    334667899999999996  569999999999


Q ss_pred             EEEEe
Q 046226          351 SRVWA  355 (434)
Q Consensus       351 i~iwd  355 (434)
                      |+|||
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.5e-33  Score=243.91  Aligned_cols=250  Identities=16%  Similarity=0.180  Sum_probs=199.4

Q ss_pred             ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226          122 FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS  199 (434)
Q Consensus       122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (434)
                      |+..+.+++|...|++++|+|+  +|++|+.||.|++||+.+++....+.                     ..|...|.+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~---------------------~~h~~~v~~   60 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP---------------------DVHATMITG   60 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS---------------------CSCSSCEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc---------------------CCCCCcEEE
Confidence            5677889999999999999997  89999999999999998765544331                     158999999


Q ss_pred             EEEecCCCEEEEEecCCcEEEEEcCCCee---EEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEE
Q 046226          200 IAINVSDDTLYSASLDKTIKVWRIRDSKC---IETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLI  276 (434)
Q Consensus       200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  276 (434)
                      ++|+|++.+ ++++.|+.+++|+......   ......+...+.++++++++.+++++.++.+++|+..     ..   .
T Consensus        61 v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~-----~~---~  131 (299)
T d1nr0a2          61 IKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG-----KL---T  131 (299)
T ss_dssp             EEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT-----EE---E
T ss_pred             EEeecccee-ecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccc-----cc---c
Confidence            999999875 5566799999999865431   1122346778899999999955556667889999854     11   1


Q ss_pred             EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEE
Q 046226          277 LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVW  354 (434)
Q Consensus       277 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iw  354 (434)
                      ..  .....+.+++|+|++++|++|+.||.|++||++.......   ....|...|.+++++  +++|++++.|+.|++|
T Consensus       132 ~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~  206 (299)
T d1nr0a2         132 EV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV---KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPY  206 (299)
T ss_dssp             EE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE---EEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cc--cccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccc
Confidence            11  1234678899999999999999999999999865432211   233678899999986  5699999999999999


Q ss_pred             eccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          355 AREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       355 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      |+.++........+.+|...|++++|+|+         +.+|++|+.||.|++||+.+++.
T Consensus       207 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---------~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         207 SVANNFELAHTNSWTFHTAKVACVSWSPD---------NVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             EGGGTTEESCCCCCCCCSSCEEEEEECTT---------SSEEEEEETTSCEEEEETTCTTS
T ss_pred             ccccccccccccccccccccccccccccc---------ccceEEEcCCCEEEEEECCCCCc
Confidence            99987655566678889999999999999         89999999999999999988754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=239.02  Aligned_cols=293  Identities=10%  Similarity=0.070  Sum_probs=213.9

Q ss_pred             eeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeE---eeccCCCccEEEEEEeCC---EEEEEEcCCeE
Q 046226           83 RCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTEC---GRLKAKTSMVVAMEVSHD---RVYAAYGDGKI  154 (434)
Q Consensus        83 ~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i  154 (434)
                      +.+...++|++.|++|+|  ++++||+|+.||+|+|||+.+....   .....|..+|.+++|+++   .+++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            456777899999999999  8999999999999999998664332   233369999999999875   78899999999


Q ss_pred             EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee----EE
Q 046226          155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC----IE  230 (434)
Q Consensus       155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~  230 (434)
                      ++|++...........                     .+........+.++...+++++.++.+++||++.+..    ..
T Consensus        82 ~~w~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~  140 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTN---------------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEECSSSSSSEEECBS---------------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             eeeecccccccccccc---------------------cccccccccccccccccccccccccccceeeccccccceeeec
Confidence            9999977655443321                     2344455666677889999999999999999865432    22


Q ss_pred             EcccC--ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEe-cCCCEEEEEcCCCe
Q 046226          231 TIQAH--SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT-LDDGLLYGGCTDGY  306 (434)
Q Consensus       231 ~~~~~--~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~  306 (434)
                      ....+  ......+.+.+.+ .+++++.|+.|++||++......  .. .........+.+..+. .++..+++++.||.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  217 (342)
T d1yfqa_         141 NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN--GT-IEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             ESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC--CE-EEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             ccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc--ee-eeecccccceeeeEeecCCCCEEEeecCCCe
Confidence            22222  2234455566666 89999999999999987332222  22 2223334455555554 46789999999999


Q ss_pred             EEEEEcCccccccc-----------ccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecccc
Q 046226          307 IHYWHKGWFSAQLQ-----------YGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG  373 (434)
Q Consensus       307 i~i~d~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  373 (434)
                      +.+|++........           ......+|...|.+++|+  +++|++|+.||.|++||++++   +.+..+..+ .
T Consensus       218 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~---~~l~~~~~~-~  293 (342)
T d1yfqa_         218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFAKF-N  293 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCC-S
T ss_pred             EEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC---cEEEEecCC-C
Confidence            99999764332211           112334677788999986  569999999999999999987   677766543 3


Q ss_pred             ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          374 PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       374 ~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      .+..++|+|+         +++|++++.|+.+++|....
T Consensus       294 ~~~~~~~s~~---------~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         294 EDSVVKIACS---------DNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             SSEEEEEEEC---------SSEEEEEEECTHHHHCSSSC
T ss_pred             CCEEEEEEeC---------CCEEEEEEcCCcEEEeeeeC
Confidence            4455778887         88999999999999997653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-31  Score=233.92  Aligned_cols=244  Identities=12%  Similarity=0.138  Sum_probs=188.4

Q ss_pred             eeeEEEeec-cccEEEEEE----cCCEEEEEeCCCeEEEecCCCcee--------EeeccCCCccEEEEEEeCC--EEEE
Q 046226           83 RCISSVLKK-DGQILCIAV----GNGFIYTGSDSNVIRIWKQPEFTE--------CGRLKAKTSMVVAMEVSHD--RVYA  147 (434)
Q Consensus        83 ~~~~~~~~h-~~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~~~~--------~~~~~~~~~~v~~l~~~~~--~l~~  147 (434)
                      ..+..+.+| ...|++++|    ++.+|++|+.||+|+|||+..++.        ...+..|.++|.+++|+++  .+++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            445667777 468999999    568999999999999999865332        2335578899999999997  6666


Q ss_pred             EEc--CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE-EEEEecCCcEEEEEcC
Q 046226          148 AYG--DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT-LYSASLDKTIKVWRIR  224 (434)
Q Consensus       148 ~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~  224 (434)
                      ++.  ++.+++|+.++++.+..+                      .+|...|.+++|+|++.+ +++++.|+.|++||+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~----------------------~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~  190 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSLGEV----------------------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP  190 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEEEEC----------------------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred             eeccccceEEEEeecccccceee----------------------eecccccccccccccccceEEEeeccccccccccc
Confidence            654  778999998776554443                      269999999999999875 6789999999999998


Q ss_pred             CCeeEEEc---ccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEe---cCCC
Q 046226          225 DSKCIETI---QAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT---LDDG  296 (434)
Q Consensus       225 ~~~~~~~~---~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~  296 (434)
                      .++....+   ..|...|.+++|+|++  ++++++.|+.|++||++      .......+..|..++..+.|+   ++++
T Consensus       191 ~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~------~~~~~~~l~~~~~~v~~~~~s~~~~dg~  264 (325)
T d1pgua1         191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK------SGEFLKYIEDDQEPVQGGIFALSWLDSQ  264 (325)
T ss_dssp             TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT------TCCEEEECCBTTBCCCSCEEEEEESSSS
T ss_pred             ccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec------cccccccccccccccccceeeeeccCCC
Confidence            88765554   3567789999999975  89999999999999987      334556677777777666555   6889


Q ss_pred             EEEEEcCCCeEEEEEcCcccccccccCcccCcc--cceEEEEee-CCEEEEecCCCcEEEEec
Q 046226          297 LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT--HAVMCLASV-ANYVISGSADSTSRVWAR  356 (434)
Q Consensus       297 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~~-~~~l~s~~~dg~i~iwd~  356 (434)
                      +|++++.|+.|+|||++..+....+.  ...+.  ....++.+. +.+|++++.||.|++||+
T Consensus       265 ~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         265 KFATVGADATIRVWDVTTSKCVQKWT--LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEE--CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEEE--ecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            99999999999999998654433322  22232  233455555 458999999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-31  Score=229.60  Aligned_cols=272  Identities=21%  Similarity=0.337  Sum_probs=220.5

Q ss_pred             ccccCCCCCCCCCCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEe
Q 046226           52 SLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECG  126 (434)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~  126 (434)
                      ..|...+.+.  .+++..+++++.|.+++.|+     ++.++.+|.+.|++++|++++|++|+.|+.|++|++..+....
T Consensus        12 ~~~~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          12 SETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             CSSCCCEEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             CCCCCCEEEE--EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccc
Confidence            3445556554  44788999999998877654     6889999999999999999999999999999999999988888


Q ss_pred             eccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC
Q 046226          127 RLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD  206 (434)
Q Consensus       127 ~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  206 (434)
                      ....+.............++++..++.+.+|+............                   +..|...|.++.+.  .
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~--~  148 (293)
T d1p22a2          90 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV-------------------LVGHRAAVNVVDFD--D  148 (293)
T ss_dssp             EECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEE-------------------ECCCSSCEEEEEEE--T
T ss_pred             cccccccccccccccccceeecccccceeEeecccccccccccc-------------------ccccccccccceec--c
Confidence            87777776666666667999999999999999876654433321                   12578888887775  5


Q ss_pred             CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCe
Q 046226          207 DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV  286 (434)
Q Consensus       207 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  286 (434)
                      ..+++++.|+.|++||+++++.+..+.++...+..+.+++. .+++++.||.|++||++      ..........+...+
T Consensus       149 ~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~------~~~~~~~~~~~~~~v  221 (293)
T d1p22a2         149 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIE------CGACLRVLEGHEELV  221 (293)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETT------TCCEEEEECCCSSCE
T ss_pred             cccccccCCCceeeecCCCCcEEEEEcccccccccccCCCC-eEEEecCCCEEEEEecc------cceeeeeecccceee
Confidence            67889999999999999999999999999999988888643 89999999999999987      333455566676766


Q ss_pred             EEEEEecCCCEEEEEcCCCeEEEEEcCcccccc-----cccCcccCcccceEEEEeeCCEEEEecCCCcEEEEe
Q 046226          287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL-----QYGGALQGHTHAVMCLASVANYVISGSADSTSRVWA  355 (434)
Q Consensus       287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd  355 (434)
                      ..  +.+++.+|++|+.||.|++||+.......     .....+.+|...|.+++|++++|++|+.||+|+|||
T Consensus       222 ~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         222 RC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             ee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            54  55678999999999999999986433221     223456789999999999999999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-30  Score=230.66  Aligned_cols=255  Identities=24%  Similarity=0.386  Sum_probs=192.8

Q ss_pred             ecCCCceeEeeccCCCccE-EEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC
Q 046226          117 WKQPEFTECGRLKAKTSMV-VAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG  195 (434)
Q Consensus       117 wd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (434)
                      |+..+.+....+++|.+.| .++.+++++|++|+.||+|+|||+.+++.+..+                      .+|..
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~----------------------~~h~~   58 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL----------------------VGHTG   58 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEC----------------------CCCSS
T ss_pred             CCCCCCCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEE----------------------eCCCC
Confidence            6667778888899999987 568888889999999999999999877655444                      26999


Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEE---------------------------------
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINAL---------------------------------  242 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~---------------------------------  242 (434)
                      .|.+++|++  ++|++|+.|+.+++|+............+...+...                                 
T Consensus        59 ~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  136 (342)
T d2ovrb2          59 GVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH  136 (342)
T ss_dssp             CEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred             CEEEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecc
Confidence            999999986  499999999999999987765443333222221111                                 


Q ss_pred             -----EEcCC-CeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          243 -----VVADD-GVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       243 -----~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                           ..... ..+++++.|+.|++||+.      .......+.+|...+..  +.+++.++++++.||.|++||++...
T Consensus       137 ~~~~~~~~~~~~~~~~~~~d~~i~~~d~~------~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~  208 (342)
T d2ovrb2         137 VAAVRCVQYDGRRVVSGAYDFMVKVWDPE------TETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGN  208 (342)
T ss_dssp             SSCEEEEEECSSCEEEEETTSCEEEEEGG------GTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCC
T ss_pred             cccceeeccccceeeeecCCCeEEEeecc------cceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccce
Confidence                 11112 267778888888888876      33445556666655544  45578999999999999999987543


Q ss_pred             ccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE
Q 046226          317 AQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI  396 (434)
Q Consensus       317 ~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l  396 (434)
                      .    ...+.+|...+.++++++++|++|+.||.|++||+........+.....|...+.++.++           +.++
T Consensus       209 ~----~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~  273 (342)
T d2ovrb2         209 C----IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----------KNFV  273 (342)
T ss_dssp             E----EEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-----------SSEE
T ss_pred             e----eeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC-----------CCee
Confidence            3    335668889999999999999999999999999999874333333334566677777766           4589


Q ss_pred             EEeecCCeEEEEecCCCCcccc
Q 046226          397 CTGSLDGVLKMWRVTRPKSSCG  418 (434)
Q Consensus       397 ~s~~~Dg~v~iw~~~~~~~~~~  418 (434)
                      ++|+.||.|++||+++++.+..
T Consensus       274 ~s~s~Dg~i~iwd~~tg~~i~~  295 (342)
T d2ovrb2         274 ITSSDDGTVKLWDLKTGEFIRN  295 (342)
T ss_dssp             EEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEcCCCEEEEEECCCCCEEEE
Confidence            9999999999999999876543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-29  Score=224.28  Aligned_cols=266  Identities=12%  Similarity=0.086  Sum_probs=193.5

Q ss_pred             eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226          123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI  200 (434)
Q Consensus       123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (434)
                      +.+...++|...|++|+|+|+  +|++|+.||+|+|||+........+...                   .+|..+|.++
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-------------------~~h~~~V~~v   62 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-------------------LRYKHPLLCC   62 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-------------------EECSSCEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe-------------------cCCCCCEEEE
Confidence            456778899999999999997  8999999999999999766543333211                   1599999999


Q ss_pred             EEecCC-CEEEEEecCCcEEEEEcCCCeeEEEcccCccCe-EEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226          201 AINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI-NALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       201 ~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  277 (434)
                      +|+|++ .+|++|+.||.|++|++...........+.... ....+.++. .+++++.++.+++||++............
T Consensus        63 ~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~  142 (342)
T d1yfqa_          63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             EEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             EEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccc
Confidence            999874 578999999999999999887777666554443 334444444 99999999999999987433322222221


Q ss_pred             EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe---eCCEEEEecCCCcEEEE
Q 046226          278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS---VANYVISGSADSTSRVW  354 (434)
Q Consensus       278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~iw  354 (434)
                      ...........+.+.+.+..+++++.|+.|++||++........... ..+...+.+...   ++..+++++.||.+.+|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         143 NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             CSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             ccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeee-cccccceeeeEeecCCCCEEEeecCCCeEEEE
Confidence            22222334556777888999999999999999998755443332211 123333444443   36799999999999999


Q ss_pred             eccCCCce------eeE------EEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          355 AREQDGRH------TML------AVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       355 d~~~~~~~------~~~------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      +.......      ...      ....+|...|++++|+|+         +.+|+||+.||.|++||+.+++.+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~---------~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR---------HKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT---------TCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             EecCCcceeeccccceeeeeeeccCCCcccccceeEEecCC---------ccEEEEECCCCEEEEEECCCCcEEE
Confidence            98654211      111      122456778999999999         8999999999999999999887654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=231.53  Aligned_cols=262  Identities=11%  Similarity=0.173  Sum_probs=184.2

Q ss_pred             eeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE---
Q 046226          126 GRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI---  202 (434)
Q Consensus       126 ~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---  202 (434)
                      ...++|...|.+++++++++++++.|++|++||....+.......         ....       ..|...+..+..   
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~   71 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDK---------SYSH-------FVHKSGLHHVDVLQA   71 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGG---------EEEE-------ECCTTCEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccce---------eEee-------eeccCCceEeeeEee
Confidence            445799999999999999999999999999999765543211100         0000       013333222221   


Q ss_pred             ---ec-CCCEEEEEecCCcEEEEEcCCCeeEEE----------cccCccCeEEEEEcCC-----C-eEEEEeCCCeEEEE
Q 046226          203 ---NV-SDDTLYSASLDKTIKVWRIRDSKCIET----------IQAHSEPINALVVADD-----G-VLYSASDDATVRVW  262 (434)
Q Consensus       203 ---~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~----------~~~~~~~v~~~~~~~~-----~-~l~s~~~dg~i~iw  262 (434)
                         .. +..++++++.||.|++|++........          ...+...+..+++.++     + ++++++.||.+++|
T Consensus        72 ~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw  151 (393)
T d1sq9a_          72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW  151 (393)
T ss_dssp             EETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred             eccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEE
Confidence               11 235678999999999999864321111          1124456777777754     2 78999999999999


Q ss_pred             ecccccC---------cc---eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc--cccCcccCc
Q 046226          263 RRYFYSE---------NQ---LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL--QYGGALQGH  328 (434)
Q Consensus       263 d~~~~~~---------~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~  328 (434)
                      |+.....         ..   ..........+...+.+++|+|++ +|++|+.||.|++||+.......  .....+.+|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h  230 (393)
T d1sq9a_         152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN  230 (393)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred             EeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccc
Confidence            9852111         01   111222233445568899999987 89999999999999997654332  333566789


Q ss_pred             ccceEEEEee--CCEEEEecCCC---cEEEEeccCCCceeeEEE-------------eeccccceeEEEEeecccCCCCC
Q 046226          329 THAVMCLASV--ANYVISGSADS---TSRVWAREQDGRHTMLAV-------------LVGHRGPIRCAIAFLGRFGEETE  390 (434)
Q Consensus       329 ~~~v~~~~~~--~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~~~~~  390 (434)
                      ...|.+++|+  +++|++|+.|+   .|++||++++   .++..             +.+|.+.|++++|+|+       
T Consensus       231 ~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g---~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd-------  300 (393)
T d1sq9a_         231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-------  300 (393)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSS-------
T ss_pred             cceEEEcccccccceeeeecCCCCcceeeecccccc---eeeeeeccccccccceeeeecccCceeeeccCCC-------
Confidence            9999999985  67999999887   4999999987   33333             3489999999999999       


Q ss_pred             CcccEEEEeecCCeEEEEecCCCCcc
Q 046226          391 DEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       391 ~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                        +++|+|||.||+|++||+.+++.+
T Consensus       301 --~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         301 --GETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             --SSEEEEEETTSEEEEEETTTTEEE
T ss_pred             --CCeeEEECCCCEEEEEECCCCCEE
Confidence              899999999999999999998754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.5e-30  Score=222.75  Aligned_cols=266  Identities=13%  Similarity=0.087  Sum_probs=212.2

Q ss_pred             CCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeE
Q 046226           47 FSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTEC  125 (434)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~  125 (434)
                      +.+.+.+|..++.+..+.+    +++++.|.+++.|+......+|.+.|.++++ .+..+++++.|++|++|++...+  
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~--   78 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE--   78 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE--
T ss_pred             eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeeccccccccccccc--
Confidence            3456789999999887754    8999999999999988888999999999999 78889999999999999975432  


Q ss_pred             eeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec
Q 046226          126 GRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV  204 (434)
Q Consensus       126 ~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  204 (434)
                           ....+..+.+.++ .++..+.++.+.+|+....+....+.                       +...+  .++++
T Consensus        79 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~--~~~~~  128 (287)
T d1pgua2          79 -----FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-----------------------LNSPG--SAVSL  128 (287)
T ss_dssp             -----CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-----------------------CSSCE--EEEEE
T ss_pred             -----cccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-----------------------cccee--eeeec
Confidence                 2345677888887 66677788889999987766555442                       33333  45667


Q ss_pred             CCCEEEEEecCC-cEEEEEcCCCeeEEEcc-cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc
Q 046226          205 SDDTLYSASLDK-TIKVWRIRDSKCIETIQ-AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA  281 (434)
Q Consensus       205 ~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  281 (434)
                      ++..+++++.++ .|++|++...+....+. .|...+.+++|+|++ +|++|+.||.|++||+.     ........+..
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~-----~~~~~~~~~~~  203 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ-----SREVKTSRWAF  203 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----TTEEEECCSCC
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeec-----ccccccccccc
Confidence            788888888775 79999998766655554 477889999999999 99999999999999987     12223334677


Q ss_pred             cccCeEEEEEecC----------CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CCEEEEecCCCc
Q 046226          282 KYSPVKTLTLTLD----------DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGSADST  350 (434)
Q Consensus       282 ~~~~v~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~  350 (434)
                      |...|.+++|+|.          +.+|++|+.|+.|++||++...   .....+.+|...|.++.|+ +..|++++.|+.
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~---~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~  280 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAHKDGVNNLLWETPSTLVSSGADAC  280 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT---CCEEETTSSTTCEEEEEEEETTEEEEEETTSC
T ss_pred             cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC---eEEEEeCCCCCCeEEEEECCCCEEEEEECCCe
Confidence            8899999999874          4689999999999999986433   2334566899999999986 458999999999


Q ss_pred             EEEEec
Q 046226          351 SRVWAR  356 (434)
Q Consensus       351 i~iwd~  356 (434)
                      |++|++
T Consensus       281 v~iW~i  286 (287)
T d1pgua2         281 IKRWNV  286 (287)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.6e-28  Score=220.69  Aligned_cols=273  Identities=8%  Similarity=0.013  Sum_probs=204.9

Q ss_pred             EEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcC--CeEEEeecCCCCCceeeE
Q 046226           95 ILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD--GKIRVWRSTWDNGVKHVK  169 (434)
Q Consensus        95 v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d--g~i~vwd~~~~~~~~~~~  169 (434)
                      ....+. +|+++|+++ +|.|++||+.++..+..  .|...|.+++|+||  .|++++.+  ..|++||...++....  
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~--   81 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF--   81 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC--
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe--
Confidence            345566 899999987 57999999988776653  68999999999998  66666654  3799999976543322  


Q ss_pred             eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-
Q 046226          170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-  248 (434)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  248 (434)
                                           ..|...|.+++|+|++++|++++.++.+++|++.+++....+..|...+.+++|+|++ 
T Consensus        82 ---------------------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  140 (360)
T d1k32a3          82 ---------------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR  140 (360)
T ss_dssp             ---------------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC
T ss_pred             ---------------------eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhcccee
Confidence                                 2699999999999999999999999999999999999999999999999999999999 


Q ss_pred             eEEEE----------eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226          249 VLYSA----------SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ  318 (434)
Q Consensus       249 ~l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  318 (434)
                      +|+.+          ..++.+++||+.      .. .......+...+..++|+|+|++|++++.++.+.+||.......
T Consensus       141 ~la~~~~~~~~~~~~~~~~~~~v~d~~------~~-~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~  213 (360)
T d1k32a3         141 FIAYGFPLKHGETDGYVMQAIHVYDME------GR-KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS  213 (360)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETT------TT-EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             eeeeeccccccceeeccccceeeeccc------cC-ceeeecccccccccccccCCCCEEEEEeCCCceEccccccccee
Confidence            66643          345678999987      11 22334456677889999999999999999999999985432110


Q ss_pred             cc-------------------c------c--------------CcccCcccceEEEEee------------C---CEEEE
Q 046226          319 LQ-------------------Y------G--------------GALQGHTHAVMCLASV------------A---NYVIS  344 (434)
Q Consensus       319 ~~-------------------~------~--------------~~~~~~~~~v~~~~~~------------~---~~l~s  344 (434)
                      ..                   .      .              ..+.........+...            +   .++++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (360)
T d1k32a3         214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG  293 (360)
T ss_dssp             CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHC
T ss_pred             eccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEe
Confidence            00                   0      0              0000011111222211            1   14566


Q ss_pred             ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          345 GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                      ++.++.|++||+.+++   .    ..|.+.|.+++|+||         |++|++++.||.|++||+++++..
T Consensus       294 ~~~~~~i~~~d~~~~~---~----~~~~~~v~~~~~SpD---------G~~l~~~~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         294 APEKGVLLKYDVKTRK---V----TEVKNNLTDLRLSAD---------RKTVMVRKDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             CCCCEEEEEEETTTCC---E----EEEEEEEEEEEECTT---------SCEEEEEETTSCEEEEESSCTTSC
T ss_pred             cCCCCEEEEEECCCCe---E----EEecCCcCEEEECCC---------CCEEEEEECCCeEEEEECCCCCcc
Confidence            7788999999998752   1    234566899999999         999999999999999999988754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.3e-23  Score=193.01  Aligned_cols=282  Identities=8%  Similarity=-0.019  Sum_probs=196.3

Q ss_pred             EEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226          104 FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR  181 (434)
Q Consensus       104 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      ++++.+.||.|+|||+.+++.+.++..|. .+..++|+||  ++++++.|+.|++||+.+.+......+...        
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~--------  104 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG--------  104 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC--------
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC--------
Confidence            56778899999999999999999998875 5899999998  888999999999999988876544432211        


Q ss_pred             EEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCe
Q 046226          182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDAT  258 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~  258 (434)
                               .+|...+.+++|+|||++++++ ..++.+.+||..+++++..+..|...+..+.+.+++  ..+..+.|+.
T Consensus       105 ---------~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~  175 (426)
T d1hzua2         105 ---------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP  175 (426)
T ss_dssp             ---------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred             ---------CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCC
Confidence                     1466677788899999987654 578999999999999888877666555444444444  3333444444


Q ss_pred             -----------EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCcccccccccCccc
Q 046226          259 -----------VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQLQYGGALQ  326 (434)
Q Consensus       259 -----------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~  326 (434)
                                 +.+++...     ..........+...+..+.++|++++++++. .+..+.+++...............
T Consensus       176 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (426)
T d1hzua2         176 EFIVNVKETGKVLLVNYKD-----IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT  250 (426)
T ss_dssp             EEEEEETTTTEEEEEECSS-----SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSC
T ss_pred             EEEEecCCCCeEEEEEecc-----ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCc
Confidence                       44443320     1111122234566788999999999887765 466788999875544332221111


Q ss_pred             CcccceEEEEeeCC---EEEEecCCCcEEEEeccCCC----ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEE--
Q 046226          327 GHTHAVMCLASVAN---YVISGSADSTSRVWAREQDG----RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC--  397 (434)
Q Consensus       327 ~~~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~--  397 (434)
                      .|......+...+.   ..++.+.|+.+.+|+.....    ..+....+.+|...+..++|+|+         +.+|+  
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd---------g~~l~v~  321 (426)
T d1hzua2         251 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK---------SSHLYVD  321 (426)
T ss_dssp             CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTT---------CSEEEEC
T ss_pred             ccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCC---------CceEEEe
Confidence            22222222233222   33455668888888876532    23577889999999999999999         88998  


Q ss_pred             -----EeecCCeEEEEecCCCCccc
Q 046226          398 -----TGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       398 -----s~~~Dg~v~iw~~~~~~~~~  417 (434)
                           +++.|++|++||+.+++...
T Consensus       322 ~~~~~s~~~~~tv~vwd~~t~~~~~  346 (426)
T d1hzua2         322 TTFNPDARISQSVAVFDLKNLDAKY  346 (426)
T ss_dssp             CTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred             ecCCCCcccCCEEEEEECCCCCcCe
Confidence                 56789999999999887643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=8.3e-24  Score=194.06  Aligned_cols=188  Identities=9%  Similarity=-0.032  Sum_probs=142.6

Q ss_pred             EEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226          104 FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR  181 (434)
Q Consensus       104 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  181 (434)
                      ++++.+.||.|.|||..+++.+..+..+. .+..++|+||  ++++++.|+.|++||+.+.+......+...        
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~--------  104 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--------  104 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--------
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC--------
Confidence            35889999999999999999999998774 6999999998  889999999999999987664433322110        


Q ss_pred             EEEeccccccCcCCCeEEEEEecCCCEE-EEEecCCcEEEEEcCCCeeEEEcccC-----------ccCeEEEEEcCCC-
Q 046226          182 NLIVGKDKMMKHMGPITSIAINVSDDTL-YSASLDKTIKVWRIRDSKCIETIQAH-----------SEPINALVVADDG-  248 (434)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~v~~~~~~~~~-  248 (434)
                               .+|.+.+.+..|+|||++| +++..++.|++||..+++++..+..+           ......+.+++++ 
T Consensus       105 ---------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2         105 ---------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             ---------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             ---------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence                     1356667777888999986 67888999999999999988876543           3456678889988 


Q ss_pred             -eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCc
Q 046226          249 -VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGW  314 (434)
Q Consensus       249 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  314 (434)
                       ++++...++.|.+||....   .... ...+ .+...+..++|+|+|+++++++. ++.+.++|...
T Consensus       176 ~~~vs~~~~~~i~~~d~~~~---~~~~-~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         176 EFIVNVKETGKILLVDYTDL---NNLK-TTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EEEEEETTTTEEEEEETTCS---SEEE-EEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEEEccCCeEEEEEccCC---Ccce-EEEE-cccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence             5677788899999997611   1111 1122 23456889999999998777765 55788888653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=5.1e-22  Score=173.16  Aligned_cols=262  Identities=14%  Similarity=0.079  Sum_probs=190.6

Q ss_pred             EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEE-EEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeE
Q 046226          106 YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVY-AAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN  182 (434)
Q Consensus       106 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (434)
                      ++++.|++|.+||+++++.+.++... ..+..++|+|+  +++ +++.++.|++||+.+.+.+..+.             
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-------------   71 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-------------   71 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-------------
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-------------
Confidence            45678999999999999999988754 45789999997  564 55578999999998776655542             


Q ss_pred             EEeccccccCcCCCeEEEEEecCCCEEEE-EecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeE
Q 046226          183 LIVGKDKMMKHMGPITSIAINVSDDTLYS-ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATV  259 (434)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i  259 (434)
                                ....+..++|++++..+++ +..++.+.+|+..+++....+..+ ....++.+++++  .++++..++.+
T Consensus        72 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~  140 (301)
T d1l0qa2          72 ----------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTV  140 (301)
T ss_dssp             ----------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ----------ccccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccce
Confidence                      2335688999999987665 556778999999999988888744 567889999999  55667778999


Q ss_pred             EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC-CeEEEEEcCcccccccccCcccCcccceEEEEe-
Q 046226          260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-  337 (434)
Q Consensus       260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-  337 (434)
                      .+|+..      ......... ....+..+.+++++..++++..+ +.+.+|+........    ....+ ..+..+.+ 
T Consensus       141 ~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~  208 (301)
T d1l0qa2         141 SVINTV------TKAVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID----TVKVE-AAPSGIAVN  208 (301)
T ss_dssp             EEEETT------TTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEECS-SEEEEEEEC
T ss_pred             eeeecc------ccceeeecc-cCCCceEEEeeccccceeeecccccccccccccceeeee----ccccc-CCcceeecc
Confidence            999976      222222222 33467889999999988877765 566677654332221    12122 23445555 


Q ss_pred             -eCCEEEEe---cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE-EEeecCCeEEEEecCC
Q 046226          338 -VANYVISG---SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI-CTGSLDGVLKMWRVTR  412 (434)
Q Consensus       338 -~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg~v~iw~~~~  412 (434)
                       +++.++.+   ..++.|++||+.++   +.+..+..+ ..+.+++|+|+         |++| ++++.|+.|++||+++
T Consensus       209 ~~g~~~~v~~~~~~~~~v~v~D~~t~---~~~~~~~~~-~~~~~va~spd---------g~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         209 PEGTKAYVTNVDKYFNTVSMIDTGTN---KITARIPVG-PDPAGIAVTPD---------GKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             TTSSEEEEEEECSSCCEEEEEETTTT---EEEEEEECC-SSEEEEEECTT---------SSEEEEEETTTTEEEEEETTT
T ss_pred             ccccccccccccceeeeeeeeecCCC---eEEEEEcCC-CCEEEEEEeCC---------CCEEEEEECCCCeEEEEECCC
Confidence             46655443   34578999999987   666666554 45789999999         7765 6888899999999999


Q ss_pred             CCccc
Q 046226          413 PKSSC  417 (434)
Q Consensus       413 ~~~~~  417 (434)
                      ++.+.
T Consensus       276 ~~~~~  280 (301)
T d1l0qa2         276 NTITA  280 (301)
T ss_dssp             TEEEE
T ss_pred             CeEEE
Confidence            87654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=4.8e-24  Score=191.11  Aligned_cols=264  Identities=11%  Similarity=0.040  Sum_probs=184.6

Q ss_pred             CCC-CCCccCCCCCCC----cccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCC--eEEEecCCCceeEeeccCCCc
Q 046226           63 HPF-NPTAAAGSSSPE----TSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSN--VIRIWKQPEFTECGRLKAKTS  133 (434)
Q Consensus        63 ~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~~~  133 (434)
                      |+| +++.++..+...    .+.....++  .+|.+.|.+++|  +|++|++++.+.  .|++||..+++.. .+..|..
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~   86 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLG   86 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCC
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCc
Confidence            444 566665544321    122233333  369999999999  898888776553  8999999886654 5778999


Q ss_pred             cEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE
Q 046226          134 MVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS  211 (434)
Q Consensus       134 ~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  211 (434)
                      .|.+++|+|+  +|++++.++.+++|++...+......                      .|...+.+++|+|+|++|+.
T Consensus        87 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~spdg~~la~  144 (360)
T d1k32a3          87 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER----------------------SREAMITDFTISDNSRFIAY  144 (360)
T ss_dssp             SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------------------CSSSCCCCEEECTTSCEEEE
T ss_pred             eEEeeeecccccccceeccccccccccccccceeeeee----------------------cccccccchhhccceeeeee
Confidence            9999999998  89999999999999998766544442                      48888999999999999986


Q ss_pred             Ee----------cCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCc---ceeEEEE
Q 046226          212 AS----------LDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSEN---QLHTLIL  277 (434)
Q Consensus       212 ~~----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~  277 (434)
                      +.          .++.+++||+.+++..... .+...+..+.|+|++ .|++++.++.+++||.......   .......
T Consensus       145 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~  223 (360)
T d1k32a3         145 GFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI  223 (360)
T ss_dssp             EEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred             eccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEE
Confidence            53          3456999999988765444 467788899999999 8999999999999986421100   0000000


Q ss_pred             ----------------------------------EecccccCeEEEEEecCC-------------CEEEEEcCCCeEEEE
Q 046226          278 ----------------------------------TLTAKYSPVKTLTLTLDD-------------GLLYGGCTDGYIHYW  310 (434)
Q Consensus       278 ----------------------------------~~~~~~~~v~~~~~~~~~-------------~~l~~~~~dg~i~i~  310 (434)
                                                        .+....+....+...+++             .++++++.++.|++|
T Consensus       224 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  303 (360)
T d1k32a3         224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY  303 (360)
T ss_dssp             ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred             ecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEE
Confidence                                              000011122223322222             234556678899999


Q ss_pred             EcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCC
Q 046226          311 HKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDG  360 (434)
Q Consensus       311 d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~  360 (434)
                      |+...+.        ..|...|.+++|+  |++|++++.||.|++||++.++
T Consensus       304 d~~~~~~--------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         304 DVKTRKV--------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             ETTTCCE--------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             ECCCCeE--------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            9864321        2455567777775  7799999999999999999874

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=9.6e-23  Score=180.72  Aligned_cols=272  Identities=10%  Similarity=0.002  Sum_probs=188.5

Q ss_pred             CEEEEEeCCCeEEEecCCCceeEeeccC--CCccEEEEEEeCC--EE-EEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226          103 GFIYTGSDSNVIRIWKQPEFTECGRLKA--KTSMVVAMEVSHD--RV-YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG  177 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~--~l-~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  177 (434)
                      ++|++++.|++|+|||+++++.+..+..  +...+.+++|+||  ++ ++++.++.|.+||+.+++.+........    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~----   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC----
Confidence            6899999999999999999999988865  3456789999998  55 4556799999999998877666543211    


Q ss_pred             CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec------------CCcEEEEEcCCCeeEEEcccCccCeEEEEEc
Q 046226          178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL------------DKTIKVWRIRDSKCIETIQAHSEPINALVVA  245 (434)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  245 (434)
                                   ..+...+..++|+|++++++++..            ++.+.+||..+++.+..+.. ...+.+++++
T Consensus        78 -------------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s  143 (337)
T d1pbyb_          78 -------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA  143 (337)
T ss_dssp             -------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC
T ss_pred             -------------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEc
Confidence                         013345667999999999987763            57899999999998888874 4567899999


Q ss_pred             CCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec------------------------CCCEEEE
Q 046226          246 DDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL------------------------DDGLLYG  300 (434)
Q Consensus       246 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------------~~~~l~~  300 (434)
                      +++ ++++++.+  +.+||...      .........+.. .....+.+                        +...+..
T Consensus       144 ~dg~~l~~~~~~--~~~~d~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T d1pbyb_         144 RDGSKLYGLGRD--LHVMDPEA------GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             TTSSCEEEESSS--EEEEETTT------TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             CCCCEEEEEcCC--cceeeeec------CcEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeee
Confidence            999 77777654  67788761      112222211111 00011111                        1222222


Q ss_pred             EcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEE
Q 046226          301 GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCA  378 (434)
Q Consensus       301 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~  378 (434)
                      +..++.+.+||.........   ....+...+.++.+++  .+++.+  ++.|++||+.++   +.+..+. +...+.++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~---~~~~~~~-~~~~~~~~  285 (337)
T d1pbyb_         215 TAYRTGLLTMDLETGEMAMR---EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---ASIKRVP-LPHSYYSV  285 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEE---EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---EEEEEEE-CSSCCCEE
T ss_pred             cccCccEEEEEcCCCcEEEE---EecCCCcceEEEEecccceEEEEc--cccEEEEECCCC---cEEEEEc-CCCCEEEE
Confidence            33455677887754432221   2224445556666653  455544  689999999987   5666553 56778999


Q ss_pred             EEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccccc
Q 046226          379 IAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGH  419 (434)
Q Consensus       379 ~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~  419 (434)
                      +|+|+         |++|++++.||.|++||+.+.+.+...
T Consensus       286 ~~s~d---------G~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         286 NVSTD---------GSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EECTT---------SCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             EECCC---------CCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            99999         999999999999999999998876544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1.1e-20  Score=173.18  Aligned_cols=321  Identities=7%  Similarity=-0.044  Sum_probs=206.9

Q ss_pred             CCCCCCCc-----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEe--ec---cCCCccEEEE
Q 046226           71 AGSSSPET-----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECG--RL---KAKTSMVVAM  138 (434)
Q Consensus        71 ~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~--~~---~~~~~~v~~l  138 (434)
                      .+.+.+..     ..+++++.++..|. .+..++|  ||++|++++.|++|++||+.+++...  .+   .+|...+.++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~  114 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  114 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence            44444544     45567788888775 5899999  99999999999999999998876433  22   3455566677


Q ss_pred             EEeCC--EE-EEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-
Q 046226          139 EVSHD--RV-YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-  214 (434)
Q Consensus       139 ~~~~~--~l-~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-  214 (434)
                      +|+||  ++ +++..++.+++||...................           ....+......+.+++++..++.... 
T Consensus       115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         115 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT-----------QTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS-----------CCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             eecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccc-----------eeecCCCceeEEEECCCCCEEEEecCC
Confidence            77776  55 44557999999999887665554321111000           01125556677788888887776544 


Q ss_pred             CCcEEEEEcCCCeeE-EEcccCccCeEEEEEcCCC-e-EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEE
Q 046226          215 DKTIKVWRIRDSKCI-ETIQAHSEPINALVVADDG-V-LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTL  291 (434)
Q Consensus       215 dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  291 (434)
                      .+.+.+++......+ .....+...+..+.++|++ + +++...+..+.+++...   ... .................+
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~  259 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD---RRL-SALVDVGKTPHPGRGANF  259 (426)
T ss_dssp             TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT---TEE-EEEEECSSCCCCSCCEEE
T ss_pred             CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc---ccE-EEEeccCCcccccceeee
Confidence            456777776655432 2333577789999999999 4 44455677889998761   111 111122222222333444


Q ss_pred             ecCCC-E--EEEEcCCCeEEEEEcCcccc---cccccCcccCcccceEEEEee--CCEEEE-------ecCCCcEEEEec
Q 046226          292 TLDDG-L--LYGGCTDGYIHYWHKGWFSA---QLQYGGALQGHTHAVMCLASV--ANYVIS-------GSADSTSRVWAR  356 (434)
Q Consensus       292 ~~~~~-~--l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~s-------~~~dg~i~iwd~  356 (434)
                      ...+. .  .+....|+.+.+|+......   ..+....+.+|...+..++++  +++|++       +..|++|+|||+
T Consensus       260 ~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~  339 (426)
T d1hzua2         260 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  339 (426)
T ss_dssp             EETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEET
T ss_pred             ecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEEC
Confidence            33332 2  22345688888888654321   123344667888888877775  668884       556889999999


Q ss_pred             cCCCceeeEE------EeeccccceeEEEEeecccCCCCCCcccEE-EEe----ecCCeEEEEecCCCCcc
Q 046226          357 EQDGRHTMLA------VLVGHRGPIRCAIAFLGRFGEETEDEYCTI-CTG----SLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       357 ~~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l-~s~----~~Dg~v~iw~~~~~~~~  416 (434)
                      .+++....+.      .+..|...|..++|+|+         |++| +++    +.||.|+|||..+.+..
T Consensus       340 ~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD---------Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         340 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR---------GDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             TCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS---------SSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             CCCCcCeEEeccchhcccCCCCccEEEEEECCC---------CCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            9874332221      13356667999999999         8766 442    46899999999998753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=4.4e-22  Score=177.05  Aligned_cols=275  Identities=12%  Similarity=0.001  Sum_probs=183.9

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccC-CCccEEEEEEeCC--EE-EEEEcCCeEEEeecCCCCCceeeEeeeccCC
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKA-KTSMVVAMEVSHD--RV-YAAYGDGKIRVWRSTWDNGVKHVKLATIPKT  176 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~--~l-~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  176 (434)
                      ++++|++++.|++|.+||+.+++.+.+++. +...+.+++|+||  .+ +++..++.|.+||+.+++.+..+......  
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~--   84 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP--   84 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST--
T ss_pred             CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc--
Confidence            789999999999999999999999998874 5667889999998  45 44556899999999887666555321110  


Q ss_pred             CCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe------------cCCcEEEEEcCCCeeEEEcccC--ccCeEEE
Q 046226          177 GGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS------------LDKTIKVWRIRDSKCIETIQAH--SEPINAL  242 (434)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~  242 (434)
                                    ..+...+..++|+|||++++++.            .++.+.+||..+++....+..+  ...+..+
T Consensus        85 --------------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (346)
T d1jmxb_          85 --------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM  150 (346)
T ss_dssp             --------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred             --------------cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEE
Confidence                          11333467799999999998775            3678899999887765554433  3456667


Q ss_pred             EEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE-------------------------
Q 046226          243 VVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL-------------------------  297 (434)
Q Consensus       243 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------  297 (434)
                      .+++++.++..+  +.+.+||+..      ......+..+ .....+.++|++..                         
T Consensus       151 ~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (346)
T d1jmxb_         151 RAADDGSLYVAG--PDIYKMDVKT------GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ  221 (346)
T ss_dssp             EECTTSCEEEES--SSEEEECTTT------CCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred             EecCCCEEEEeC--CcceEEEccC------CCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCce
Confidence            777777555543  4588888761      1122222221 12223333443332                         


Q ss_pred             -EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccc
Q 046226          298 -LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP  374 (434)
Q Consensus       298 -l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~  374 (434)
                       ++++..++.+.+||+........   ....+...+..+.++  +.+++... ++.|++||..++   +.+..+. +...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~---~~~~~~~-~~~~  293 (346)
T d1jmxb_         222 DPATADLLYGYLSVDLKTGKTHTQ---EFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAAN-LDHT  293 (346)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEE---EEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEE-CSSC
T ss_pred             eEeeccCCceEEEEECCCCceEEE---EeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC---cEEEEEc-CCCC
Confidence             33334455566666643332221   223455556666554  34555544 467999999987   5665554 4557


Q ss_pred             eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226          375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      +.+++|+|+         |++|++++.||.|++||+.+.+.+.
T Consensus       294 ~~~va~s~D---------G~~l~v~~~d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         294 YYCVAFDKK---------GDKLYLGGTFNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             CCEEEECSS---------SSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             EEEEEEcCC---------CCEEEEEeCCCcEEEEECccCCEEE
Confidence            899999999         9999999999999999999987654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.8e-19  Score=157.91  Aligned_cols=281  Identities=11%  Similarity=0.087  Sum_probs=184.8

Q ss_pred             EEEEEeCCCeEEEecCCCceeEee--ccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226          104 FIYTGSDSNVIRIWKQPEFTECGR--LKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGG  178 (434)
Q Consensus       104 ~l~tg~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~  178 (434)
                      .+++++.|++|++|++.+...+..  ...|.+.+..|+|+||  +|++++. |+.|++|++.............      
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~------   79 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------   79 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec------
Confidence            457788999999999876433322  2357788999999998  6655554 8999999997655433321110      


Q ss_pred             ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEE--cccCccCeEEEEEcCCC-eEEEEe
Q 046226          179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIET--IQAHSEPINALVVADDG-VLYSAS  254 (434)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~s~~  254 (434)
                                   .+...+..++|+|||++|++++. ++.|.+|+.........  ...+...+.++.+++++ .++.++
T Consensus        80 -------------~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~  146 (333)
T d1ri6a_          80 -------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA  146 (333)
T ss_dssp             -------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE
T ss_pred             -------------ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccc
Confidence                         24456778999999999998875 66899998876654333  33466778899999999 555444


Q ss_pred             -CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCc------cc
Q 046226          255 -DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGA------LQ  326 (434)
Q Consensus       255 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~------~~  326 (434)
                       .+..|.+|+.........................++|++++.+++.. ...+...+|+.............      ..
T Consensus       147 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  226 (333)
T d1ri6a_         147 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  226 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             cccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCC
Confidence             56779999876322222222222233344567889999999887665 45677888886543322211100      01


Q ss_pred             CcccceEEEEe--eCC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee-cC
Q 046226          327 GHTHAVMCLAS--VAN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS-LD  402 (434)
Q Consensus       327 ~~~~~v~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~D  402 (434)
                      ........+.+  +++ .++++..++.+.+|++........+.....+...+..++|+|+         |++|++++ .+
T Consensus       227 ~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spD---------Gk~l~va~~~~  297 (333)
T d1ri6a_         227 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS---------GKYLIAAGQKS  297 (333)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT---------SSEEEEECTTT
T ss_pred             CccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCC---------CCEEEEEECCC
Confidence            11223334444  566 4555667889999999876544444444445567788999999         88766654 56


Q ss_pred             CeEEEEecCC
Q 046226          403 GVLKMWRVTR  412 (434)
Q Consensus       403 g~v~iw~~~~  412 (434)
                      +.|++|+++.
T Consensus       298 ~~v~v~~id~  307 (333)
T d1ri6a_         298 HHISVYEIVG  307 (333)
T ss_dssp             CEEEEEEEET
T ss_pred             CeEEEEEEEC
Confidence            8999997654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=3.6e-18  Score=148.37  Aligned_cols=250  Identities=16%  Similarity=0.142  Sum_probs=180.6

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEE-EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCC
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFI-YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDG  152 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg  152 (434)
                      ..+.+.+.++... +.+..++|  +|++| ++++.++.|++||+.+++.+..+..+.. +..+.++++   .++++..++
T Consensus        19 ~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   96 (301)
T d1l0qa2          19 VTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASS   96 (301)
T ss_dssp             TTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccc
Confidence            4455667666543 45788999  78877 5677899999999999999999887664 688999987   444555688


Q ss_pred             eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE-EecCCcEEEEEcCCCeeEEE
Q 046226          153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS-ASLDKTIKVWRIRDSKCIET  231 (434)
Q Consensus       153 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~  231 (434)
                      .+.+|+...++....+                       .+.....++.|+|++..++. +..++.+.+|+..+++.+..
T Consensus        97 ~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          97 TLSVIDTTSNTVAGTV-----------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             EEEEEETTTTEEEEEE-----------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eeeecccccceeeeec-----------------------cccccceEEEeecCCCeeeeeeccccceeeeeccccceeee
Confidence            9999998776555444                       25667889999999988764 55678899999999998888


Q ss_pred             cccCccCeEEEEEcCCC-eEEEEe-CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc---CCCe
Q 046226          232 IQAHSEPINALVVADDG-VLYSAS-DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC---TDGY  306 (434)
Q Consensus       232 ~~~~~~~v~~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~  306 (434)
                      +..+ ..+..+.+++++ .++++. .++.+.+|+..      ......... ....+..+++++++..++++.   .++.
T Consensus       154 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~  225 (301)
T d1l0qa2         154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV------TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNT  225 (301)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT------TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             cccC-CCceEEEeeccccceeeeccccccccccccc------ceeeeeccc-ccCCcceeeccccccccccccccceeee
Confidence            7744 567889999998 555555 45677777655      122222222 234577899999999887654   3468


Q ss_pred             EEEEEcCcccccccccCcccCcccceEEEEee--CCEE-EEecCCCcEEEEeccCCCceeeEEEee
Q 046226          307 IHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYV-ISGSADSTSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       307 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~  369 (434)
                      |++||+.+.+....    +.. ...+.+++++  |++| ++++.|+.|++||++++   +.+.++.
T Consensus       226 v~v~D~~t~~~~~~----~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~---~~~~~~~  283 (301)
T d1l0qa2         226 VSMIDTGTNKITAR----IPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN---TITATMA  283 (301)
T ss_dssp             EEEEETTTTEEEEE----EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE
T ss_pred             eeeeecCCCeEEEE----EcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC---eEEEEEe
Confidence            99999875543322    222 2346777775  6665 67888999999999988   6666654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=9.9e-18  Score=150.49  Aligned_cols=295  Identities=7%  Similarity=-0.113  Sum_probs=190.3

Q ss_pred             eccccEEEEEE--cCCEEEEE-----eCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------c
Q 046226           90 KKDGQILCIAV--GNGFIYTG-----SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------G  150 (434)
Q Consensus        90 ~h~~~v~~~~~--~~~~l~tg-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~  150 (434)
                      .+.+++.++++  +|+.+++.     +.++.|.+||..+++.+.++..+...  .++|+||  ++++++          .
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence            47888888888  88887764     33467999999999999988766554  6899998  666654          3


Q ss_pred             CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe--cCCcEEEEEcCCCee
Q 046226          151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS--LDKTIKVWRIRDSKC  228 (434)
Q Consensus       151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~  228 (434)
                      ++.|.+||..+++.+..+......     ..          .-......+.|+++++.++...  .++.+.+|+....+.
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~-----~~----------~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  160 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAP-----RF----------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD  160 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcc-----ee----------EeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE
Confidence            688999999887766554321100     00          0111235678999998876654  456899999988776


Q ss_pred             EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCe
Q 046226          229 IETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGY  306 (434)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  306 (434)
                      .....    ...++.+++++  .+++.+.|+.+.+||.........................+.+.+++. ++..+.++.
T Consensus       161 ~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  235 (373)
T d2madh_         161 DQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGK  235 (373)
T ss_pred             EEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCce
Confidence            54443    45688899988  678889999999999762111111111111111122233445555544 455567889


Q ss_pred             EEEEEcCcccccccccCccc----------CcccceEEEEe----------eCCEEEEecCCCcEEEEeccCCCceeeEE
Q 046226          307 IHYWHKGWFSAQLQYGGALQ----------GHTHAVMCLAS----------VANYVISGSADSTSRVWAREQDGRHTMLA  366 (434)
Q Consensus       307 i~i~d~~~~~~~~~~~~~~~----------~~~~~v~~~~~----------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (434)
                      +.+|+...............          ........+..          .+..++....++.+.+||..++   +.+.
T Consensus       236 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~---~~~~  312 (373)
T d2madh_         236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSS  312 (373)
T ss_pred             EEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC---cEEE
Confidence            99998765432111100000          00001111211          2345666777889999999987   5555


Q ss_pred             EeeccccceeEEEEeecccCCCCCCccc--EEEEeecCCeEEEEecCCCCccccc
Q 046226          367 VLVGHRGPIRCAIAFLGRFGEETEDEYC--TICTGSLDGVLKMWRVTRPKSSCGH  419 (434)
Q Consensus       367 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~--~l~s~~~Dg~v~iw~~~~~~~~~~~  419 (434)
                      .+ .+...+..++|+||         |+  ++++++.|++|++||+.+++.+...
T Consensus       313 ~~-~~~~~~~~~a~spD---------G~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         313 QI-SLGHDVDAISVAQD---------GGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             Ee-cCCCCeeEEEECCC---------CCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            54 35677899999999         76  4578999999999999999876544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=8.7e-18  Score=149.69  Aligned_cols=287  Identities=8%  Similarity=-0.055  Sum_probs=177.3

Q ss_pred             cCCEEEEE-----eCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEE----------EcCCeEEEeecCCCC
Q 046226          101 GNGFIYTG-----SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAA----------YGDGKIRVWRSTWDN  163 (434)
Q Consensus       101 ~~~~l~tg-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~----------s~dg~i~vwd~~~~~  163 (434)
                      +++.+++.     ..++.|.+||..+++.+.++..+..+  .++|+||  .|+++          ..|+.|++||..+++
T Consensus        12 dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~   89 (355)
T d2bbkh_          12 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL   89 (355)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence            66666654     34568999999999999988766554  6899998  45543          347899999998877


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe--cCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS--LDKTIKVWRIRDSKCIETIQAHSEPINA  241 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~  241 (434)
                      ....+.......               .........++|++++++++.+.  .+..+.+||..+++.+..+..+....  
T Consensus        90 ~~~~~~~~~~~~---------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  152 (355)
T d2bbkh_          90 PTADIELPDAPR---------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH--  152 (355)
T ss_dssp             EEEEEEETTCCC---------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE--
T ss_pred             EEEEEecCCcce---------------eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce--
Confidence            665554321110               11233445689999999988764  45789999999999888776543221  


Q ss_pred             EEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc
Q 046226          242 LVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY  321 (434)
Q Consensus       242 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  321 (434)
                      +........++.+.|+...++...................+...+....+.+++..++.++.++.+++|++.........
T Consensus       153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  232 (355)
T d2bbkh_         153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP  232 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECC
T ss_pred             EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEe
Confidence            11111113333344444444433211000000000011123334555678888889999999999999998754322111


Q ss_pred             cCc----------ccCcccceEEEEeeCCEEEEecCC----------CcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226          322 GGA----------LQGHTHAVMCLASVANYVISGSAD----------STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       322 ~~~----------~~~~~~~v~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  381 (434)
                      ...          +..+......+..++..++....+          ..|.+||..++   +.+..+. +...+.+++|+
T Consensus       233 ~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~---~~~~~~~-~~~~~~~~a~s  308 (355)
T d2bbkh_         233 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFE-MGHEIDSINVS  308 (355)
T ss_dssp             CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEE-EEEEECEEEEC
T ss_pred             ccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC---cEEEEec-CCCCEEEEEEc
Confidence            000          001111234445556655544322          47999999987   4555554 34568899999


Q ss_pred             ecccCCCCCCccc--EEEEeecCCeEEEEecCCCCccccc
Q 046226          382 LGRFGEETEDEYC--TICTGSLDGVLKMWRVTRPKSSCGH  419 (434)
Q Consensus       382 ~~~~~~~~~~~~~--~l~s~~~Dg~v~iw~~~~~~~~~~~  419 (434)
                      |+         |+  ++++++.|+.|++||+.+++.+...
T Consensus       309 pD---------G~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         309 QD---------EKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             CS---------SSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CC---------CCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence            99         65  5677888999999999999865433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=2.3e-17  Score=150.79  Aligned_cols=175  Identities=7%  Similarity=-0.009  Sum_probs=126.4

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCcee--Eeec---cCCCccEEEEEEeCC--EE-EEE
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTE--CGRL---KAKTSMVVAMEVSHD--RV-YAA  148 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~--~~~~---~~~~~~v~~l~~~~~--~l-~~~  148 (434)
                      ..+++++..+..|. .+..++|  ||++|++++.||.|++||+.+++.  ..++   ..|...+.+..|+||  +| +++
T Consensus        49 ~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~  127 (432)
T d1qksa2          49 GSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA  127 (432)
T ss_dssp             TTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred             CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEc
Confidence            46678889988774 6999999  999999999999999999987653  3333   345555566666776  44 677


Q ss_pred             EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE-EEecCCcEEEEEcCCCe
Q 046226          149 YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSK  227 (434)
Q Consensus       149 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~  227 (434)
                      ..++.|++||..+++.+.............           ...+......+.+++++..++ +...++.|.+||..+++
T Consensus       128 ~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~  196 (432)
T d1qksa2         128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQ-----------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN  196 (432)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEECTTTC-----------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred             CCCCeEEEEeCccccceeeeccCCccccce-----------eccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC
Confidence            789999999999887766654322111111           113666788899999998765 55667999999998877


Q ss_pred             eEEEcc-cCccCeEEEEEcCCC-eEEEEe-CCCeEEEEecc
Q 046226          228 CIETIQ-AHSEPINALVVADDG-VLYSAS-DDATVRVWRRY  265 (434)
Q Consensus       228 ~~~~~~-~~~~~v~~~~~~~~~-~l~s~~-~dg~i~iwd~~  265 (434)
                      ...... .+...+.+++++|++ ++++++ .++.+.++|..
T Consensus       197 ~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         197 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             cceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence            554333 355678899999999 555554 56678888864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=3e-17  Score=144.74  Aligned_cols=250  Identities=10%  Similarity=-0.009  Sum_probs=169.6

Q ss_pred             ccceeeeEEEeec--cccEEEEEE--cCCEE-EEEeCCCeEEEecCCCceeEeeccCCCc-----cEEEEEEeCC--EEE
Q 046226           79 SSSYRCISSVLKK--DGQILCIAV--GNGFI-YTGSDSNVIRIWKQPEFTECGRLKAKTS-----MVVAMEVSHD--RVY  146 (434)
Q Consensus        79 ~~~~~~~~~~~~h--~~~v~~~~~--~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~l~~~~~--~l~  146 (434)
                      .++.+++.++..+  ...+.+++|  +|++| ++++.++.|.+||+.+++.+..+..+..     .+..++|+|+  .++
T Consensus        18 ~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~   97 (337)
T d1pbyb_          18 TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred             CCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEE
Confidence            4556677777553  456788999  88877 5667899999999999999888776543     3457889987  666


Q ss_pred             EEEc------------CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec
Q 046226          147 AAYG------------DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL  214 (434)
Q Consensus       147 ~~s~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  214 (434)
                      ++..            +..+.+||.........+                       .+...+..++|+|+++++++++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----------------------~~~~~~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAF-----------------------EAPRQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE-----------------------ECCSSCCCEEECTTSSCEEEESS
T ss_pred             EeecCCcceeeeccccccceeeccccCCeEEEec-----------------------cccCCceEEEEcCCCCEEEEEcC
Confidence            6653            466777776655443333                       25566888999999999999864


Q ss_pred             CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-------------------------eEEEEeCCCeEEEEecccccC
Q 046226          215 DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-------------------------VLYSASDDATVRVWRRYFYSE  269 (434)
Q Consensus       215 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------~l~s~~~dg~i~iwd~~~~~~  269 (434)
                        .+.+||..+++....+..+... ....+.+++                         .+..+..++.+.+||+..   
T Consensus       155 --~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  228 (337)
T d1pbyb_         155 --DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET---  228 (337)
T ss_dssp             --SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT---
T ss_pred             --CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC---
Confidence              4788999999887776543221 111111111                         112223345677777651   


Q ss_pred             cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecC
Q 046226          270 NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSA  347 (434)
Q Consensus       270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~  347 (434)
                        ..........+...+..+.+++++.+++.+  ++.|++||+.+.......     .+...+.+++++  |++|++++.
T Consensus       229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~s~dG~~l~v~~~  299 (337)
T d1pbyb_         229 --GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-----PLPHSYYSVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             --CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-----ECSSCCCEEEECTTSCEEEEESB
T ss_pred             --CcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE-----cCCCCEEEEEECCCCCEEEEEeC
Confidence              111223334556678888999999988776  589999999765544332     233456677774  789999999


Q ss_pred             CCcEEEEeccCCCceeeEEEee
Q 046226          348 DSTSRVWAREQDGRHTMLAVLV  369 (434)
Q Consensus       348 dg~i~iwd~~~~~~~~~~~~~~  369 (434)
                      |+.|++||.++.   +.+..++
T Consensus       300 ~~~i~v~D~~t~---~~v~~i~  318 (337)
T d1pbyb_         300 LGDLAAYDAETL---EKKGQVD  318 (337)
T ss_dssp             SSEEEEEETTTC---CEEEEEE
T ss_pred             CCcEEEEECCCC---cEEEEEE
Confidence            999999999987   5555554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=1.5e-14  Score=129.40  Aligned_cols=301  Identities=6%  Similarity=-0.094  Sum_probs=185.8

Q ss_pred             ccCCCCCCCCCCCCCccCCCCC---C-------CcccceeeeEEEeeccccEEEEEE--cCCEEEEEe----------CC
Q 046226           54 HTSPLSSPRHPFNPTAAAGSSS---P-------ETSSSYRCISSVLKKDGQILCIAV--GNGFIYTGS----------DS  111 (434)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~----------~d  111 (434)
                      +..++....++++++.++....   .       ....+.+.+.++..+...  .++|  ||++|++++          .+
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccc
Confidence            4444555556667766643221   1       113566777777666554  5667  999998875          45


Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccccc
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMM  191 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (434)
                      +.|.+||..+++.+..+..+......+...+..++....+..+.+|..............               .....
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~---------------~~~~~  161 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG---------------GSSDD  161 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeecc---------------CCeEE
Confidence            789999999999999888777766555444444444333344444433222111111000               00011


Q ss_pred             CcCCCeEEEEEecCCCEE-EEEecCCcEEEEEcCCCeeEEEcccC------ccCeEEEEEcCCCeEEEEeCCCeEEEEec
Q 046226          192 KHMGPITSIAINVSDDTL-YSASLDKTIKVWRIRDSKCIETIQAH------SEPINALVVADDGVLYSASDDATVRVWRR  264 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~l~s~~~dg~i~iwd~  264 (434)
                      .+.....++.++++++.+ ++.+.|+.+.+||...++.......+      ......+.+.+++.++..+.++.+.+|+.
T Consensus       162 ~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  241 (373)
T d2madh_         162 QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADI  241 (373)
T ss_pred             EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEc
Confidence            344556788999998765 57888999999999988776655432      22234455666667777888999999987


Q ss_pred             ccccCcceeEEEEEecc----------cccCeEEEEEecCCCEE----------EEEcCCCeEEEEEcCcccccccccCc
Q 046226          265 YFYSENQLHTLILTLTA----------KYSPVKTLTLTLDDGLL----------YGGCTDGYIHYWHKGWFSAQLQYGGA  324 (434)
Q Consensus       265 ~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l----------~~~~~dg~i~i~d~~~~~~~~~~~~~  324 (434)
                      ....    .........          .......+++++++..+          +....++.+.+||....+.....   
T Consensus       242 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~---  314 (373)
T d2madh_         242 SAAG----ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI---  314 (373)
T ss_pred             CCCe----EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe---
Confidence            6211    111111111          11223345556555543          44566778999998655443332   


Q ss_pred             ccCcccceEEEEe--eCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          325 LQGHTHAVMCLAS--VAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       325 ~~~~~~~v~~~~~--~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                        .+...+.+++|  +|+  ++++++.|+.|++||+.++   +.+..+..+....+.+++.++
T Consensus       315 --~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg---~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         315 --SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG---DQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             --cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC---CEEEEECCCCCCCcEEEEecC
Confidence              23345667776  466  4578899999999999998   788888888777788877643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.73  E-value=1.7e-16  Score=140.44  Aligned_cols=275  Identities=11%  Similarity=-0.053  Sum_probs=179.0

Q ss_pred             CCCCCCCCccCCCCCCCc-----ccceeeeEEEe-eccccEEEEEE--cCCEE-EEEeCCCeEEEecCCCceeEeeccCC
Q 046226           61 PRHPFNPTAAAGSSSPET-----SSSYRCISSVL-KKDGQILCIAV--GNGFI-YTGSDSNVIRIWKQPEFTECGRLKAK  131 (434)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~--~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~  131 (434)
                      +.++.+.+.+++++.+..     +.+.+++.++. .|...+.+++|  ||+++ +++..++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            445667778888777755     45566778876 46667889999  88876 55667899999999999988776543


Q ss_pred             C------ccEEEEEEeCC--EEEEEE------------cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccccc
Q 046226          132 T------SMVVAMEVSHD--RVYAAY------------GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMM  191 (434)
Q Consensus       132 ~------~~v~~l~~~~~--~l~~~s------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (434)
                      .      ..+..++|+||  .++++.            .++.+.+|+...+.....+...                    
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------------------  141 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--------------------  141 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--------------------
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee--------------------
Confidence            2      23567889987  565554            3667778877665444333221                    


Q ss_pred             CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-----------------------
Q 046226          192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-----------------------  248 (434)
Q Consensus       192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------  248 (434)
                      .....+..+.+++++..++.   ++.+.+|++.+++.+..+..+.. ...+.++|++                       
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (346)
T d1jmxb_         142 PMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK  217 (346)
T ss_dssp             ECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred             eccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeec
Confidence            12334555667777765554   35689999999988887764322 2333344443                       


Q ss_pred             ----eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc
Q 046226          249 ----VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA  324 (434)
Q Consensus       249 ----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  324 (434)
                          .+.++..++.+.+||+.     ...........+...+..+.+++++.+++... ++.|.+||+...+.....   
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~---  288 (346)
T d1jmxb_         218 DDKQDPATADLLYGYLSVDLK-----TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA---  288 (346)
T ss_dssp             ------CCCEEEEEEEEEETT-----TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEE---
T ss_pred             cCceeEeeccCCceEEEEECC-----CCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEE---
Confidence                22233344456666654     11222233445667788889999888877665 467999998755433222   


Q ss_pred             ccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeecccc
Q 046226          325 LQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG  373 (434)
Q Consensus       325 ~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~  373 (434)
                        .+...+.++++  +|++|++++.|+.|++||.++.   +.+..++...+
T Consensus       289 --~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~---~~i~~i~~p~g  334 (346)
T d1jmxb_         289 --NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL---EKVKNIKLPGG  334 (346)
T ss_dssp             --ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT---EEEEEEECSSS
T ss_pred             --cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC---CEEEEEECCCC
Confidence              11224556666  5789999999999999999988   77777665444

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=3.1e-15  Score=133.74  Aligned_cols=272  Identities=8%  Similarity=-0.076  Sum_probs=168.8

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------cCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------GDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      ..|.+||..+++.+..+..+...  .++|+|+  .+++++          .|+.|.+||..+.+....+.......    
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~----  119 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR----  119 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS----
T ss_pred             ceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce----
Confidence            35777799999999888776654  5789998  555544          37789999998877666554321100    


Q ss_pred             eeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCe
Q 046226          180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDAT  258 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~  258 (434)
                                 .........++|+|||++|+++. .++.+.+||+.+++.+..+..+.....  .......++..+.||.
T Consensus       120 -----------~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~Dg~  186 (368)
T d1mdah_         120 -----------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--HPGAAATHYLGSCPAS  186 (368)
T ss_dssp             -----------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--EEEETTEEECCCCTTS
T ss_pred             -----------ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--ccCCCceEEEEcCCCC
Confidence                       01222334689999999998876 579999999999999888876544321  1122226677788888


Q ss_pred             EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC----------cccCc
Q 046226          259 VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG----------ALQGH  328 (434)
Q Consensus       259 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~  328 (434)
                      +.++++.................+...+....+.+++..+...  ++.++++++...........          .....
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T d1mdah_         187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA  264 (368)
T ss_dssp             CEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred             EEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCC
Confidence            8888876222221111111222333444556666666655543  34555666543322211100          01111


Q ss_pred             ccceEEEEeeCCEEEEecC---------CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc--EEE
Q 046226          329 THAVMCLASVANYVISGSA---------DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC--TIC  397 (434)
Q Consensus       329 ~~~v~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~--~l~  397 (434)
                      ......+..+++.++....         ...|.+||..++   +.+..+. +...+.+++|+|+         |+  +++
T Consensus       265 g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~---~~~~~~~-~~~~~~~~a~spD---------G~~~ly~  331 (368)
T d1mdah_         265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPIS-NGHDSDAIIAAQD---------GASDNYA  331 (368)
T ss_dssp             SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCE-EEEEECEEEECCS---------SSCEEEE
T ss_pred             CceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC---cEeEEec-CCCceeEEEECCC---------CCEEEEE
Confidence            1233555666665444322         235899999988   5555554 3457889999999         65  457


Q ss_pred             EeecCCeEEEEecCCCCccc
Q 046226          398 TGSLDGVLKMWRVTRPKSSC  417 (434)
Q Consensus       398 s~~~Dg~v~iw~~~~~~~~~  417 (434)
                      ++..|+.|++||..+++.+.
T Consensus       332 s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         332 NSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             EETTTTEEEEEESSSCEEEE
T ss_pred             EeCCCCeEEEEECCCCCEEE
Confidence            77889999999999998654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.4e-13  Score=119.21  Aligned_cols=238  Identities=11%  Similarity=0.126  Sum_probs=152.2

Q ss_pred             EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEc
Q 046226          145 VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRI  223 (434)
Q Consensus       145 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~  223 (434)
                      +++++.|++|++|++........+..                    ..|.+.+..|+|+|||++|++++ .|+.|++|++
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~--------------------~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i   66 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQV--------------------VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI   66 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEE--------------------EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEE--------------------EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            35566799999999986654443322                    14788899999999999996655 4899999999


Q ss_pred             CCCeeEEEc---ccCccCeEEEEEcCCC-eEEEEe-CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226          224 RDSKCIETI---QAHSEPINALVVADDG-VLYSAS-DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL  298 (434)
Q Consensus       224 ~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  298 (434)
                      ........+   ..+...+..++|+||| +|++++ .++.|.+|+..    ............+...+.++.++|+++++
T Consensus        67 ~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          67 APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE----DGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             CTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE----TTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             eCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc----cccceecccccCCCccceEEEeeecceee
Confidence            765433222   2244567789999999 666666 57789999865    12222333344556678889999999988


Q ss_pred             EEEcC-CCeEEEEEcCccccccccc--CcccCcccceEEEEee--CCEE-EEecCCCcEEEEeccCCCc-eeeEEEee--
Q 046226          299 YGGCT-DGYIHYWHKGWFSAQLQYG--GALQGHTHAVMCLASV--ANYV-ISGSADSTSRVWAREQDGR-HTMLAVLV--  369 (434)
Q Consensus       299 ~~~~~-dg~i~i~d~~~~~~~~~~~--~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~iwd~~~~~~-~~~~~~~~--  369 (434)
                      ++++. +..|.+|+...........  ............+.++  +.++ .+....+...+|+...... ........  
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  222 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  222 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee
Confidence            77764 5679999976433222111  0111222334566665  4444 4455667788887654321 11222221  


Q ss_pred             ----ccccceeEEEEeecccCCCCCCccc-EEEEeecCCeEEEEecCCCCc
Q 046226          370 ----GHRGPIRCAIAFLGRFGEETEDEYC-TICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       370 ----~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                          ........++++++         ++ .++++..++.+.+|++.....
T Consensus       223 ~~~~~~~~~~~~~~~s~d---------~~~~~~~~~~~~~~~~~~~~~~~~  264 (333)
T d1ri6a_         223 PENFSDTRWAADIHITPD---------GRHLYACDRTASLITVFSVSEDGS  264 (333)
T ss_dssp             CTTCCSCCCEEEEEECTT---------SSEEEEEETTTTEEEEEEECTTSC
T ss_pred             ecCCCccccceeEEEecc---------cCceeeecccCCeEEEEEEcCCCC
Confidence                12334566788888         55 455566788999999886643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=1.3e-12  Score=115.56  Aligned_cols=270  Identities=8%  Similarity=-0.032  Sum_probs=168.3

Q ss_pred             ccceeeeEEEeeccccEEEEEE--cCCEEEEE----------eCCCeEEEecCCCceeEeeccCCCc-------cEEEEE
Q 046226           79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTG----------SDSNVIRIWKQPEFTECGRLKAKTS-------MVVAME  139 (434)
Q Consensus        79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg----------~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~  139 (434)
                      ..+.+.+.++..+..+  .++|  +|++|++.          ..|+.|++||..+++.+..+..+..       ....++
T Consensus        35 ~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~  112 (355)
T d2bbkh_          35 GEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS  112 (355)
T ss_dssp             TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred             CCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEE
Confidence            4456677777666555  5677  88888764          4478999999999988877654322       234578


Q ss_pred             EeCC--EEEEEE--cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ec
Q 046226          140 VSHD--RVYAAY--GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SL  214 (434)
Q Consensus       140 ~~~~--~l~~~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~  214 (434)
                      |+++  .++++.  .+..+.+|+..+.+....+....      ....         ........+.+++++..++.. ..
T Consensus       113 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---------~~~~~~~~~~~~~dg~~~~v~~~~  177 (355)
T d2bbkh_         113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD------CYHI---------FPTAPDTFFMHCRDGSLAKVAFGT  177 (355)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEE---------EEEETTEEEEEETTSCEEEEECCS
T ss_pred             EecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC------cceE---------eecCCcceEEEcCCCCEEEEEecC
Confidence            9887  555554  46789999988776555443210      0000         012234456677777766654 33


Q ss_pred             CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc----------cc
Q 046226          215 DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA----------KY  283 (434)
Q Consensus       215 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~  283 (434)
                      ++.+.+++......     .+...+....+.+++ .++.++.++.+.+|++......    .......          ..
T Consensus       178 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~p  248 (355)
T d2bbkh_         178 EGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK----FLPAVEALTEAERADGWRP  248 (355)
T ss_dssp             SSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE----ECCCEESSCHHHHHTTEEE
T ss_pred             CCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE----EEeccCCcccceEeeeeec
Confidence            45566666544332     233344555666666 8888999999999998722111    1111111          11


Q ss_pred             cCeEEEEEecCCCEEEEEcCC----------CeEEEEEcCcccccccccCcccCcccceEEEEee--CC--EEEEecCCC
Q 046226          284 SPVKTLTLTLDDGLLYGGCTD----------GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--AN--YVISGSADS  349 (434)
Q Consensus       284 ~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~s~~~dg  349 (434)
                      .....+++++++..++....+          ..|.+||..+.+....+    . +...+.+++++  |+  ++++++.|+
T Consensus       249 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~----~-~~~~~~~~a~spDG~~~l~v~~~~d~  323 (355)
T d2bbkh_         249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF----E-MGHEIDSINVSQDEKPLLYALSTGDK  323 (355)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE----E-EEEEECEEEECCSSSCEEEEEETTTT
T ss_pred             cceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe----c-CCCCEEEEEEcCCCCeEEEEEECCCC
Confidence            233458889999988776543          47999998755433222    1 23346677765  55  466788899


Q ss_pred             cEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226          350 TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL  382 (434)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  382 (434)
                      .|++||++++   +.+..+.++......+.+.+
T Consensus       324 ~i~v~D~~tg---~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         324 TLYIHDAESG---EELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             EEEEEETTTC---CEEEEECCCCSSCCEEECCC
T ss_pred             EEEEEECCCC---CEEEEEeCcCCCccEEEeCC
Confidence            9999999998   77778877655555555443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=1.3e-12  Score=120.46  Aligned_cols=133  Identities=11%  Similarity=0.048  Sum_probs=96.5

Q ss_pred             EEE--cCCEEEEEeCCCeEEEecCCCceeEeec-----cCCCccEEEEEEeCC--EEEEEEc---------CCeEEEeec
Q 046226           98 IAV--GNGFIYTGSDSNVIRIWKQPEFTECGRL-----KAKTSMVVAMEVSHD--RVYAAYG---------DGKIRVWRS  159 (434)
Q Consensus        98 ~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~--~l~~~s~---------dg~i~vwd~  159 (434)
                      +.|  ++++++.  .|+.|.+||+.+++....+     ..|...|.++.|+||  .|+.++.         ++.+.+||+
T Consensus        22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          22 LRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            445  5555553  4788999999998876544     445678999999998  6666643         567889998


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC----
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH----  235 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----  235 (434)
                      .+++... +                      ..+...+..+.|+|||+.++... ++.+++|+..+++..+....+    
T Consensus       100 ~~~~~~~-l----------------------~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~  155 (470)
T d2bgra1         100 NKRQLIT-E----------------------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI  155 (470)
T ss_dssp             TTTEECC-S----------------------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT
T ss_pred             CCCcccc-c----------------------ccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCc
Confidence            8664322 1                      25788899999999999999865 778999999988766544322    


Q ss_pred             --------------ccCeEEEEEcCCC-eEEEEeCC
Q 046226          236 --------------SEPINALVVADDG-VLYSASDD  256 (434)
Q Consensus       236 --------------~~~v~~~~~~~~~-~l~s~~~d  256 (434)
                                    .+....+.|+||| .|+....|
T Consensus       156 ~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence                          2234568899999 77766543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.46  E-value=2.7e-12  Score=113.97  Aligned_cols=264  Identities=10%  Similarity=0.048  Sum_probs=162.3

Q ss_pred             EEEEeCCCeEEEecCCCceeEeeccC------------------------------CCccEEEEEEeCC--EEEEE-EcC
Q 046226          105 IYTGSDSNVIRIWKQPEFTECGRLKA------------------------------KTSMVVAMEVSHD--RVYAA-YGD  151 (434)
Q Consensus       105 l~tg~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~v~~l~~~~~--~l~~~-s~d  151 (434)
                      +++|+.+|.|+||++.+++.+.++..                              |..........||  +|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67788999999999999988877532                              1222333334455  56555 458


Q ss_pred             CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE--EEEEecCC-------------
Q 046226          152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT--LYSASLDK-------------  216 (434)
Q Consensus       152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~~dg-------------  216 (434)
                      ++|.++|+.+.+....+.+                     .+...+..++|+|+++.  ++..+.+.             
T Consensus        94 ~rVavIDl~t~k~~~ii~i---------------------P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~  152 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHI---------------------PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD  152 (441)
T ss_dssp             TEEEEEETTTTEEEEEEEC---------------------TTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred             CEEEEEECCCCcEeeEEec---------------------CCCCCccceEEeccCCEEEEEeccCCcccccCcccccccc
Confidence            9999999987765554432                     35677899999999884  44444332             


Q ss_pred             ----cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCC---------------eEEEEeccc----------
Q 046226          217 ----TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDA---------------TVRVWRRYF----------  266 (434)
Q Consensus       217 ----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg---------------~i~iwd~~~----------  266 (434)
                          .+..+|..+.+...++... +....+.++|+| ++++.+.+.               .|.+.+...          
T Consensus       153 ~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~  231 (441)
T d1qnia2         153 NSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNF  231 (441)
T ss_dssp             GEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCC
T ss_pred             cccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCE
Confidence                2355888888777776643 356789999999 555554332               122222100          


Q ss_pred             --cc--------CcceeEEEEEecccccCeEEEEEecCCCEEEE-EcCCCeEEEEEcCcccccccccCcccCcccce---
Q 046226          267 --YS--------ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG-GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV---  332 (434)
Q Consensus       267 --~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v---  332 (434)
                        ..        ..........+... .....+.++|||+++++ +..+++|.+||+........  ..+ .+...+   
T Consensus       232 ~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~--~~~-~~~~~~~~~  307 (441)
T d1qnia2         232 KTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE--DKI-ELRDTIVAE  307 (441)
T ss_dssp             BCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT--TSS-CGGGGEEEC
T ss_pred             EEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhh--ccC-CcceEEEee
Confidence              00        00011122223332 33567999999998755 67799999999865332111  111 111112   


Q ss_pred             -------EEEEee--CCEEEEecCCCcEEEEeccCC------C-ceeeEEEe-----eccccceeEEEEeecccCCCCCC
Q 046226          333 -------MCLASV--ANYVISGSADSTSRVWAREQD------G-RHTMLAVL-----VGHRGPIRCAIAFLGRFGEETED  391 (434)
Q Consensus       333 -------~~~~~~--~~~l~s~~~dg~i~iwd~~~~------~-~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~  391 (434)
                             ...+|+  |+.+.+...|..|..|++...      . ....+..+     .+|...+.+.+++|+        
T Consensus       308 ~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pd--------  379 (441)
T d1qnia2         308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDAD--------  379 (441)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCC--------
T ss_pred             cccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCC--------
Confidence                   223565  457788889999999998521      1 11233333     577777777777777        


Q ss_pred             cccEEEEe---ecCC
Q 046226          392 EYCTICTG---SLDG  403 (434)
Q Consensus       392 ~~~~l~s~---~~Dg  403 (434)
                       |++|+++   +.|.
T Consensus       380 -Gk~l~s~~k~s~dr  393 (441)
T d1qnia2         380 -GKWLVVLSKFSKDR  393 (441)
T ss_dssp             -CCEEEEEESCCGGG
T ss_pred             -CcEEEecCcccccc
Confidence             9999999   5554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.26  E-value=1.8e-10  Score=102.14  Aligned_cols=260  Identities=7%  Similarity=-0.044  Sum_probs=152.8

Q ss_pred             cceeeeEEEeeccccEEEEEE--cCCEEEEEe----------CCCeEEEecCCCceeEeeccCCCc-------cEEEEEE
Q 046226           80 SSYRCISSVLKKDGQILCIAV--GNGFIYTGS----------DSNVIRIWKQPEFTECGRLKAKTS-------MVVAMEV  140 (434)
Q Consensus        80 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~  140 (434)
                      .+.+.+.++..+....  ++|  +|+.|++.+          .|+.|++||..+++.+..+..+..       ....++|
T Consensus        54 ~~~~~~~~~~~~~~~~--~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~  131 (368)
T d1mdah_          54 GCGVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             TTTEEEEEEEECTTCE--EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred             CCCcEEEEEeCCCCCc--ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE
Confidence            4456677777666654  555  888888754          478899999999998887754322       2246889


Q ss_pred             eCC--EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCc
Q 046226          141 SHD--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKT  217 (434)
Q Consensus       141 ~~~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  217 (434)
                      +||  +++++. .++.+.+||+.+.+.......                      +....   .+......++..+.||.
T Consensus       132 SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~----------------------~~~~~---~~~~~~~~~v~~~~Dg~  186 (368)
T d1mdah_         132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKS----------------------ASCFH---IHPGAAATHYLGSCPAS  186 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC----------------------SSCCC---CEEEETTEEECCCCTTS
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec----------------------cCcce---EccCCCceEEEEcCCCC
Confidence            998  566665 579999999987765554432                      11110   01112345555666777


Q ss_pred             EEEEEcCCCeeEE------EcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecc----------
Q 046226          218 IKVWRIRDSKCIE------TIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTA----------  281 (434)
Q Consensus       218 i~vwd~~~~~~~~------~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------  281 (434)
                      +.++++.......      .+..+...+....+.+++.++. ...+.+.++++....    .........          
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  261 (368)
T d1mdah_         187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAG----ATMKAAIDGNESGRKADNF  261 (368)
T ss_dssp             CEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSC----CEEECCCCSSCTHHHHTTE
T ss_pred             EEEEEecCCceeeeeeecccccccccceeecccccCcEEEE-ecCCCEEEEeecCCc----eEEEeecccccceeeeeee
Confidence            7777765443221      1223444556677777773332 223456666654111    011111110          


Q ss_pred             cccCeEEEEEecCCCEEEEEcCC---------CeEEEEEcCcccccccccCcccCcccceEEEEee--CC--EEEEecCC
Q 046226          282 KYSPVKTLTLTLDDGLLYGGCTD---------GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--AN--YVISGSAD  348 (434)
Q Consensus       282 ~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~s~~~d  348 (434)
                      .......+++++++..++....+         ..|.+||..+.+....+     .+...+..++++  |+  .++++..|
T Consensus       262 ~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-----~~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----SNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-----EEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             cCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe-----cCCCceeEEEECCCCCEEEEEEeCCC
Confidence            11223457889988877665332         35889998755433222     223456666664  65  45677889


Q ss_pred             CcEEEEeccCCCceeeEEEeeccccceeEEEE
Q 046226          349 STSRVWAREQDGRHTMLAVLVGHRGPIRCAIA  380 (434)
Q Consensus       349 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  380 (434)
                      +.|++||..++   +.+..+..... -..|++
T Consensus       337 ~~v~v~D~~tg---k~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         337 EVLDIYDAASD---QDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             TEEEEEESSSC---EEEEECCCCSC-CCEEEC
T ss_pred             CeEEEEECCCC---CEEEEEECCCC-CCEEEE
Confidence            99999999998   67777765433 234443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.19  E-value=1.1e-09  Score=96.99  Aligned_cols=259  Identities=10%  Similarity=0.008  Sum_probs=152.4

Q ss_pred             ccccEEEEEE--cCCEEEEE-eCCCeEEEecCCCceeEeecc-CCCccEEEEEEeCC---EEEEEEcCCeEEE-------
Q 046226           91 KDGQILCIAV--GNGFIYTG-SDSNVIRIWKQPEFTECGRLK-AKTSMVVAMEVSHD---RVYAAYGDGKIRV-------  156 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~---~l~~~s~dg~i~v-------  156 (434)
                      |.-...+...  ||++|++. ..++.|.++|+.+++....+. .+......++|+|+   ..+++..+..+.+       
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            4444555443  89988665 467899999999998877664 35677999999986   2333333333322       


Q ss_pred             -----------eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-----------
Q 046226          157 -----------WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-----------  214 (434)
Q Consensus       157 -----------wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----------  214 (434)
                                 +|..+.+....+.                       -......+.|+|+|+++++.+.           
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~-----------------------v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~  206 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVI-----------------------VDGNLDNTDADYTGKYATSTCYNSERAVDLAGT  206 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEE-----------------------ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred             ccccccceEEeecCccceeeEEEe-----------------------cCCCccceEECCCCCEEEEEecCCCceEEEecc
Confidence                       3333322222221                       1234556677777777666553           


Q ss_pred             ------------------------------CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEE
Q 046226          215 ------------------------------DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVW  262 (434)
Q Consensus       215 ------------------------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iw  262 (434)
                                                    ++.+.+++....+.+..+..... ...+.++|||  .++++..+++|.+|
T Consensus       207 t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~  285 (441)
T d1qnia2         207 MRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVI  285 (441)
T ss_dssp             TCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEE
T ss_pred             CcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEE
Confidence                                          34555555555556666665444 5789999999  45667789999999


Q ss_pred             ecccccCc-----ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc------cccccCc-----cc
Q 046226          263 RRYFYSEN-----QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA------QLQYGGA-----LQ  326 (434)
Q Consensus       263 d~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~-----~~  326 (434)
                      |+......     .....+.......-.....+|+++|..+.+...|..|..|++.....      .......     ..
T Consensus       286 d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~  365 (441)
T d1qnia2         286 AIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQP  365 (441)
T ss_dssp             EGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred             EeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCC
Confidence            98632210     00011111111222345668999998888889999999999742210      0011111     13


Q ss_pred             CcccceEEEE--eeCCEEEEe---cCCCc----------EEEEeccCCCceeeEEEeeccccc
Q 046226          327 GHTHAVMCLA--SVANYVISG---SADST----------SRVWAREQDGRHTMLAVLVGHRGP  374 (434)
Q Consensus       327 ~~~~~v~~~~--~~~~~l~s~---~~dg~----------i~iwd~~~~~~~~~~~~~~~h~~~  374 (434)
                      +|...+.+.+  ++|++|+++   +.|..          -.+.|+.. .+.+++.......++
T Consensus       366 GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~-~~~~~~~~~~~~~ep  427 (441)
T d1qnia2         366 GHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISG-EEMKLVHDGPTYAEP  427 (441)
T ss_dssp             EEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSS-SSCEEEEEEEESSCC
T ss_pred             CCCccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecC-CeEEEEecCCCCCCC
Confidence            5655444443  468899999   55543          45666653 344555554443333

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.09  E-value=2.2e-07  Score=81.59  Aligned_cols=279  Identities=12%  Similarity=0.046  Sum_probs=145.7

Q ss_pred             EEEEeC--CCeEEEe--cCCCcee--Eeec-cCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccC
Q 046226          105 IYTGSD--SNVIRIW--KQPEFTE--CGRL-KAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPK  175 (434)
Q Consensus       105 l~tg~~--dg~i~iw--d~~~~~~--~~~~-~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~  175 (434)
                      |++|+.  .+.|.++  |.++++.  +... ......+..|+++++  .|+++. .+.+..|.+.............   
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~---   80 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHP---   80 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEE---
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeec---
Confidence            666754  4566554  4455443  2221 223445667999987  566554 5678888776543322221110   


Q ss_pred             CCCceeEEEeccccccCcCCCeEEEEEecCCCEEE--EEe-cCCcEEEEEcCC-------------Ce---eEEE-cccC
Q 046226          176 TGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY--SAS-LDKTIKVWRIRD-------------SK---CIET-IQAH  235 (434)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--s~~-~dg~i~vwd~~~-------------~~---~~~~-~~~~  235 (434)
                                       .......++++++++.++  ++. ..+.|..+.+..             ++   .... -...
T Consensus        81 -----------------~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~  143 (365)
T d1jofa_          81 -----------------IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE  143 (365)
T ss_dssp             -----------------CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT
T ss_pred             -----------------CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCC
Confidence                             112233455556665332  221 133444433321             00   0111 1112


Q ss_pred             ccCeEEEEEcCCC-eEEEEe-CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEc
Q 046226          236 SEPINALVVADDG-VLYSAS-DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHK  312 (434)
Q Consensus       236 ~~~v~~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~  312 (434)
                      ...+.++.|+|++ +++++. ....|.+|+...... ................+.++|+|+++++++.. .++.|.+|++
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~-~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE-VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc-eeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            2357899999999 555554 456788887652111 11111112223346789999999999886655 5789999998


Q ss_pred             Ccccccccc-------c--------CcccCcccceEE--EEeeCCEEEEecC------CCcEEEEeccCCCceeeEE---
Q 046226          313 GWFSAQLQY-------G--------GALQGHTHAVMC--LASVANYVISGSA------DSTSRVWAREQDGRHTMLA---  366 (434)
Q Consensus       313 ~~~~~~~~~-------~--------~~~~~~~~~v~~--~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~---  366 (434)
                      .........       .        .....+......  ++.+|++|+++..      .+.|..|++..........   
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            644321110       0        000111122233  4456788776632      2247777776543222211   


Q ss_pred             EeeccccceeEEEEeecccCCCCCCcccEEEEe-ecCCeEEEEecCCC
Q 046226          367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG-SLDGVLKMWRVTRP  413 (434)
Q Consensus       367 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~Dg~v~iw~~~~~  413 (434)
                      ..........+++++|..        |++|+.+ ..++.|.+|+++..
T Consensus       303 ~~~~~G~~p~~i~~~p~~--------G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWS--------DEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSCCTTCCCEEECTTC--------TTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEcCCCCccEEEecCCC--------CCEEEEEeCCCCeEEEEEEeCC
Confidence            112233456778998732        7766554 67899999998754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.05  E-value=1.9e-08  Score=92.00  Aligned_cols=121  Identities=9%  Similarity=-0.086  Sum_probs=78.0

Q ss_pred             eeccccEEEEEE--cCCEEEEEeC---------CCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEE
Q 046226           89 LKKDGQILCIAV--GNGFIYTGSD---------SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIR  155 (434)
Q Consensus        89 ~~h~~~v~~~~~--~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~  155 (434)
                      ..|...|.++.|  ||++|+.++.         ++.+.|||+.+++ +..+..+...+..+.|+||  .++. ..++.+.
T Consensus        58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~  135 (470)
T d2bgra1          58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAY-VWNNDIY  135 (470)
T ss_dssp             TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEE-EETTEEE
T ss_pred             hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeE-eecccce
Confidence            345678999999  9999998753         5688999999877 4567888999999999998  5555 4578899


Q ss_pred             EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC
Q 046226          156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD  215 (434)
Q Consensus       156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  215 (434)
                      +|+...+.........    .......-...........+....+.|+|||++|+....|
T Consensus       136 ~~~~~~g~~~~~t~~~----~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         136 VKIEPNLPSYRITWTG----KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EESSTTSCCEECCSCC----BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             EEECCCCceeeeeecc----CCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            9998877654332100    0000000000000001133445667788888888876544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.04  E-value=1e-06  Score=75.06  Aligned_cols=228  Identities=9%  Similarity=-0.014  Sum_probs=144.4

Q ss_pred             eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEe
Q 046226           82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVW  157 (434)
Q Consensus        82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vw  157 (434)
                      .+.+.++-.. ..+..+++  +|+++++...+++|..|+.....  ..+......+.+++|.++  .+++...++.+..|
T Consensus        18 ~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          18 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   94 (302)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             ccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence            3444444322 24778888  89999999999999999865432  233445677999999997  55555667778887


Q ss_pred             ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc----
Q 046226          158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ----  233 (434)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----  233 (434)
                      +.......... +..                  .........+++.++++++++...++.+..+|...+.......    
T Consensus        95 ~~~~~~~~~~~-~~~------------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  155 (302)
T d2p4oa1          95 SLVKSDGTVET-LLT------------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML  155 (302)
T ss_dssp             EEECTTSCEEE-EEE------------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG
T ss_pred             Eecccccceee-ccc------------------cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcc
Confidence            76543221111 000                  0244567899999999988888888999999988765332221    


Q ss_pred             ------cCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeE
Q 046226          234 ------AHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYI  307 (434)
Q Consensus       234 ------~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  307 (434)
                            ........+.+..+.++++.+..+.|..+++.............    .......++++++|++.++...++.|
T Consensus       156 ~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~pdgia~d~dG~l~va~~~~~~V  231 (302)
T d2p4oa1         156 ARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV----EQTNIDDFAFDVEGNLYGATHIYNSV  231 (302)
T ss_dssp             SCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE----ESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             ceeeccCcccccccccccCCceeeecCCCCeEEecccccccccccccccc----CCCCCcceEECCCCCEEEEEcCCCcE
Confidence                  11234566777655577888888999988876322211111111    22345679999999988888889999


Q ss_pred             EEEEcCcccccccccCcccCcccceEEEEee
Q 046226          308 HYWHKGWFSAQLQYGGALQGHTHAVMCLASV  338 (434)
Q Consensus       308 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  338 (434)
                      ..++.....   .............++++|.
T Consensus       232 ~~i~p~G~~---~~~~~~~~~~~~pt~vafg  259 (302)
T d2p4oa1         232 VRIAPDRST---TIIAQAEQGVIGSTAVAFG  259 (302)
T ss_dssp             EEECTTCCE---EEEECGGGTCTTEEEEEEC
T ss_pred             EEECCCCCE---EEEEecCCCCCCceEEEEc
Confidence            999764221   1111122223346777773

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.03  E-value=9e-08  Score=81.78  Aligned_cols=202  Identities=9%  Similarity=-0.033  Sum_probs=137.0

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~  274 (434)
                      .+..+++.|||+++++...+++|..||... + ...+......+.++++.+++ ++++...++.+..++....  .....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~--~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS--DGTVE  104 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT--TSCEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc--cccee
Confidence            578899999999999999899999998654 3 23344456788999999999 7777778888888876521  12222


Q ss_pred             EEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc------cCcccCcccceEEEEeeCC-EEEEecC
Q 046226          275 LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY------GGALQGHTHAVMCLASVAN-YVISGSA  347 (434)
Q Consensus       275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~-~l~s~~~  347 (434)
                      .... .........+++.++++++++.+.++.+..+|..........      .............+.++++ ++++.+.
T Consensus       105 ~~~~-~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~  183 (302)
T d2p4oa1         105 TLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE  183 (302)
T ss_dssp             EEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT
T ss_pred             eccc-cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC
Confidence            2222 233456789999999999998888999988887644322111      0111122234567777776 4555667


Q ss_pred             CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          348 DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       348 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      .+.|+.++............+ ........+++.++         |.+.++...++.|..++...
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~d---------G~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         184 KMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVE---------GNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTT---------CCEEEECBTTCCEEEECTTC
T ss_pred             CCeEEeccccccccccccccc-cCCCCCcceEECCC---------CCEEEEEcCCCcEEEECCCC
Confidence            888888888765332222222 22334567888888         88888888899998887653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.00  E-value=4.8e-07  Score=77.46  Aligned_cols=241  Identities=9%  Similarity=-0.007  Sum_probs=141.1

Q ss_pred             EEEEEEeCC-EEEEEEc--------CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC
Q 046226          135 VVAMEVSHD-RVYAAYG--------DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS  205 (434)
Q Consensus       135 v~~l~~~~~-~l~~~s~--------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  205 (434)
                      ...++|.++ .++.+..        +|.|..||..++........ .                 .......-..++|.++
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~-~-----------------~~~~~g~P~Gl~~~~d   81 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-E-----------------VNGYGGIPAGCQCDRD   81 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-E-----------------ETTEECCEEEEEECSS
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC-c-----------------cccCCCcceeEEEeCC
Confidence            456678886 4444433        35677777665433221100 0                 0012234578999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCCeeEEEcccCc----cCeEEEEEcCCC-eEEEEeC---------------CCeEEEEecc
Q 046226          206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHS----EPINALVVADDG-VLYSASD---------------DATVRVWRRY  265 (434)
Q Consensus       206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~-~l~s~~~---------------dg~i~iwd~~  265 (434)
                      ++.++++...+.|...|..............    ...+.+++.++| +.++-..               +|.|..++..
T Consensus        82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d  161 (314)
T d1pjxa_          82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD  161 (314)
T ss_dssp             SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred             CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec
Confidence            9988888877789999986554322111111    135789999999 4444211               2334444332


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCCC-----EEEEEcCCCeEEEEEcCccccccc--ccCcccC-cccceEEEEe
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDG-----LLYGGCTDGYIHYWHKGWFSAQLQ--YGGALQG-HTHAVMCLAS  337 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~-~~~~v~~~~~  337 (434)
                          .......    ......+.++|++++.     ++++-+..+.|..||+........  ....+.+ +....-.+++
T Consensus       162 ----g~~~~~~----~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiav  233 (314)
T d1pjxa_         162 ----GQMIQVD----TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             ----SCEEEEE----EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             ----CceeEee----CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEE
Confidence                1111111    1223456789998764     445557788999998753321111  1111111 1222345555


Q ss_pred             --eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc-EEEEeecCCeEEEEecCCC
Q 046226          338 --VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC-TICTGSLDGVLKMWRVTRP  413 (434)
Q Consensus       338 --~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~iw~~~~~  413 (434)
                        +|++.++....+.|.+||.+.+   ..+..+.......++++|.|+         ++ +.+|.+.+|.|...++...
T Consensus       234 D~~GnlyVa~~~~g~I~~~dp~~g---~~~~~i~~p~~~~t~~afg~d---------~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         234 DEDNNLLVANWGSSHIEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQ---------TKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTCB---SCSEEEECSSSCEEEEEECTT---------SSEEEEEETTTTEEEEEECSSC
T ss_pred             ecCCcEEEEEcCCCEEEEEeCCCC---EEEEEEECCCCCEEEEEEeCC---------CCEEEEEECCCCcEEEEECCCC
Confidence              4777777777899999998765   344455555567889999987         54 6677788898888887644

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=1.4e-07  Score=78.67  Aligned_cols=191  Identities=5%  Similarity=-0.066  Sum_probs=119.4

Q ss_pred             CeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE
Q 046226          196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT  274 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~  274 (434)
                      ....+++.++++++++....+.+++++-.+...+.... ......++++.+++ ++++-..+..+..++...     ...
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~-----~~~  131 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-----KTQ  131 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC-----SSC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeecccccccccccccc-----cee
Confidence            45678899999887777666667666655554443332 23457899999988 555555566677776541     111


Q ss_pred             EEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEE
Q 046226          275 LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSR  352 (434)
Q Consensus       275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~  352 (434)
                      .... .........++++++++++++...++.|..+|..........    .........++++  |+++++....+.|.
T Consensus       132 ~~~~-~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~----~~~~~~p~gi~~d~~g~l~vsd~~~~~i~  206 (260)
T d1rwia_         132 TVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP----FTDITAPWGIAVDEAGTVYVTEHNTNQVV  206 (260)
T ss_dssp             EECC-CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC----CSSCCSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             eeee-ecccCCcceeeecCCCCEeeeccccccccccccccceeeeee----ccccCCCccceeeeeeeeeeeecCCCEEE
Confidence            1111 112245578999999998888888899999987543222111    1222344666665  66777777788888


Q ss_pred             EEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226          353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR  409 (434)
Q Consensus       353 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~  409 (434)
                      .++.....   ........-.....|++.++         |.++++-..+++|+..+
T Consensus       207 ~~~~~~~~---~~~~~~~~~~~P~~i~~d~~---------g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         207 KLLAGSTT---STVLPFTGLNTPLAVAVDSD---------RTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EECTTCSC---CEECCCCSCCCEEEEEECTT---------CCEEEEEGGGTEEEEEC
T ss_pred             EEeCCCCe---EEEEccCCCCCeEEEEEeCC---------CCEEEEECCCCEEEEEe
Confidence            88766531   11111122345678999887         78877767777665444

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=4e-07  Score=75.72  Aligned_cols=231  Identities=6%  Similarity=-0.042  Sum_probs=133.5

Q ss_pred             cEEEEEE--cCCEEEEE-eCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEc-CCeEEEeecCCCCCceee
Q 046226           94 QILCIAV--GNGFIYTG-SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYG-DGKIRVWRSTWDNGVKHV  168 (434)
Q Consensus        94 ~v~~~~~--~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~-dg~i~vwd~~~~~~~~~~  168 (434)
                      .-..+++  +|++.++. +..+.+..++...................++++++ .++++.. .+.+++++-.........
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            3467888  67766654 45577777765543322222222233467788876 4555444 444555443222111111


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG  248 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (434)
                                             .......++++.++++++++-..+..+..++...................+++.+++
T Consensus        95 -----------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  151 (260)
T d1rwia_          95 -----------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG  151 (260)
T ss_dssp             -----------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTC
T ss_pred             -----------------------eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCC
Confidence                                   233557889999999888777667778888775543322222223456789999988


Q ss_pred             -eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC
Q 046226          249 -VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG  327 (434)
Q Consensus       249 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  327 (434)
                       .+++...++.|..+|...     .. ..............++++++|+++++....+.|..++..........    ..
T Consensus       152 ~~~v~~~~~~~i~~~d~~~-----~~-~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~----~~  221 (260)
T d1rwia_         152 NVYVTDTDNNRVVKLEAES-----NN-QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP----FT  221 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTT-----CC-EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECC----CC
T ss_pred             CEeeecccccccccccccc-----ce-eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEc----cC
Confidence             667777888899998661     11 11122233456788999999998888888899998876432211111    11


Q ss_pred             cccceEEEEee--CCEEEEecCCCcEEEEecc
Q 046226          328 HTHAVMCLASV--ANYVISGSADSTSRVWARE  357 (434)
Q Consensus       328 ~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~  357 (434)
                      .-.....++++  |+++++-..++.|+.++..
T Consensus       222 ~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         222 GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            12234566664  5566665556666655443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.93  E-value=2.1e-06  Score=72.03  Aligned_cols=231  Identities=10%  Similarity=0.095  Sum_probs=142.8

Q ss_pred             EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccC------CCccEEEEEEeCC--EEEEE--EcCCeEEEeecCCC
Q 046226           95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKA------KTSMVVAMEVSHD--RVYAA--YGDGKIRVWRSTWD  162 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~~--~l~~~--s~dg~i~vwd~~~~  162 (434)
                      -..+++  +++++++-..++.|++||.+ ++.+..+..      ....-..+++..+  ..+.+  +.++.|.+++.. +
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g  102 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G  102 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-S
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-c
Confidence            577888  67888877788899999964 565554421      1123345555543  33332  235566666543 2


Q ss_pred             CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc--ccCccCeE
Q 046226          163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI--QAHSEPIN  240 (434)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~  240 (434)
                      .....+.                     .........+++.+++.++++....+.+.+++. .++.+..+  ..+.....
T Consensus       103 ~~~~~~~---------------------~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~  160 (279)
T d1q7fa_         103 QFVRKFG---------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPN  160 (279)
T ss_dssp             CEEEEEC---------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEE
T ss_pred             cceeecC---------------------CCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccc
Confidence            1111110                     124456788999999998888777788888886 45666655  33556778


Q ss_pred             EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe--cccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCccc
Q 046226          241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL--TAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFS  316 (434)
Q Consensus       241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~  316 (434)
                      .+++.+++ .+++....+.|.+||..   +.    ....+  .+.......|+++++|+++++-.. ++.|.+|+... +
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~~---G~----~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G-~  232 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNYE---GQ----YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-Q  232 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETT---CC----EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-C
T ss_pred             eeeeccceeEEeeeccccceeeeecC---Cc----eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC-C
Confidence            89999988 77777788999999865   21    22222  234456789999999997776544 45799998432 1


Q ss_pred             ccccccCcccCcccceEEEEeeCC-EEEEecCCCcEEEEeccCC
Q 046226          317 AQLQYGGALQGHTHAVMCLASVAN-YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       317 ~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~  359 (434)
                      ....+...  ........++++++ .|++.+.++.|++|.....
T Consensus       233 ~~~~~~~~--~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         233 LISALESK--VKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEEEES--SCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             EEEEEeCC--CCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence            11111111  11123455555422 4555567899999988754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.92  E-value=1.7e-06  Score=75.76  Aligned_cols=262  Identities=9%  Similarity=0.058  Sum_probs=136.3

Q ss_pred             ccccEEEEEE--cCCEEEEEeCCCeEEEecCCC-ceeEeec-cCCCccEEEEEEeCC--EEEEEE---cCCeEEEeecCC
Q 046226           91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE-FTECGRL-KAKTSMVVAMEVSHD--RVYAAY---GDGKIRVWRSTW  161 (434)
Q Consensus        91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~-~~~~~~~-~~~~~~v~~l~~~~~--~l~~~s---~dg~i~vwd~~~  161 (434)
                      ....+.-|++  ++++|++... +.+..|.+.. +...... .........+.++++  .+++..   ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4555666888  7888888765 5677776543 2222111 111222344555655  222222   246666655433


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCC-ee--EEEc--ccC
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDS-KC--IETI--QAH  235 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~-~~--~~~~--~~~  235 (434)
                      .......  ......+. .......  ........+.++.|+|+|++++++.. ...|.+|+.... ..  ....  ...
T Consensus       117 ~~~~~~~--~~~~~~~~-~~~~~~~--~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T d1jofa_         117 FAGYGNV--FSVSETGK-LEKNVQN--YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             SCCEEEE--EEECTTCC-EEEEEEE--EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             CCCccee--Eeeeecce-ecCcccC--cccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC
Confidence            2211111  11111111 1000000  00122334789999999999888764 347888876532 22  1111  123


Q ss_pred             ccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEec--------------ccccCeEEEEEecCCCEEE
Q 046226          236 SEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLT--------------AKYSPVKTLTLTLDDGLLY  299 (434)
Q Consensus       236 ~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~  299 (434)
                      ......++|+|++  ..++...++.|.+||+......... ......              ........+.++|+|++|+
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY-THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEE-EeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            4578899999999  4455667899999998632222111 111111              1112356789999999998


Q ss_pred             EEcC------CCeEEEEEcCccccccccc--CcccCcccceEEEEe---eCCEEEEe-cCCCcEEEEeccCC
Q 046226          300 GGCT------DGYIHYWHKGWFSAQLQYG--GALQGHTHAVMCLAS---VANYVISG-SADSTSRVWAREQD  359 (434)
Q Consensus       300 ~~~~------dg~i~i~d~~~~~~~~~~~--~~~~~~~~~v~~~~~---~~~~l~s~-~~dg~i~iwd~~~~  359 (434)
                      ++..      .+.|..|++..........  ...........++++   +|++|+++ ..++.|.+|+++..
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            8742      2347777765432211110  011111122344554   47766555 57799999998754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=7.7e-06  Score=68.50  Aligned_cols=241  Identities=8%  Similarity=0.067  Sum_probs=145.4

Q ss_pred             EEEEEEeCC-EEEEE-EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC-EEEE
Q 046226          135 VVAMEVSHD-RVYAA-YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD-TLYS  211 (434)
Q Consensus       135 v~~l~~~~~-~l~~~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s  211 (434)
                      -..|+++++ .|+++ ..+..|++||.+ ++.+..+....  .              ..+.......+++..+.. .+++
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~--~--------------~~~~~~~p~~~~~~~~~~~~~~~   87 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG--K--------------RDSQLLYPNRVAVVRNSGDIIVT   87 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS--S--------------STTCBSSEEEEEEETTTTEEEEE
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccC--C--------------Cccccccccccccccccccccee
Confidence            578888886 45554 457889999854 32222221000  0              001222344556555543 3433


Q ss_pred             E-ecCCcEEEEEcCCCeeEEEcc-cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEE
Q 046226          212 A-SLDKTIKVWRIRDSKCIETIQ-AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKT  288 (434)
Q Consensus       212 ~-~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  288 (434)
                      . +.++.|.+++. .++....+. ........+++.+++ .+++....+.+.+++..   .  ..........+......
T Consensus        88 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~---g--~~~~~~g~~~~~~~~~~  161 (279)
T d1q7fa_          88 ERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN---G--NVLHKFGCSKHLEFPNG  161 (279)
T ss_dssp             ECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT---S--CEEEEEECTTTCSSEEE
T ss_pred             ccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC---C--ceeecccccccccccce
Confidence            3 34567777775 455555553 234567889999888 66666667778888754   1  11111122345567888


Q ss_pred             EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEec-CCCcEEEEeccCCCceeeE
Q 046226          289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGS-ADSTSRVWAREQDGRHTML  365 (434)
Q Consensus       289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~iwd~~~~~~~~~~  365 (434)
                      +++.++++.+++....+.|++||..... ...+  ...+.......++++  |+++++-. .++.|.+|+.. +   +.+
T Consensus       162 i~~d~~g~i~v~d~~~~~V~~~d~~G~~-~~~~--g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~  234 (279)
T d1q7fa_         162 VVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQI--GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLI  234 (279)
T ss_dssp             EEECSSSEEEEEEGGGTEEEEEETTCCE-EEEE--SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEE
T ss_pred             eeeccceeEEeeeccccceeeeecCCce-eeee--cccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C---CEE
Confidence            9999999998888889999999965321 1111  112333445666664  67666644 35579999854 3   444


Q ss_pred             EEeec--cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226          366 AVLVG--HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS  415 (434)
Q Consensus       366 ~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~  415 (434)
                      ..+..  .......+++.++         |.+++ ++.+..|++|+.....+
T Consensus       235 ~~~~~~~~~~~p~~vav~~d---------G~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         235 SALESKVKHAQCFDVALMDD---------GSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEEESSCCSCEEEEEEETT---------TEEEE-EETTTEEEEEECSCCCC
T ss_pred             EEEeCCCCCCCEeEEEEeCC---------CcEEE-EeCCCeEEEEEeeeecC
Confidence            44432  2335788999988         76555 55789999999887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=3.3e-06  Score=70.27  Aligned_cols=235  Identities=11%  Similarity=0.014  Sum_probs=128.4

Q ss_pred             eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc-CC--eEEEeecCCCCCceeeEeeeccCCCCceeEEEecc
Q 046226          113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG-DG--KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK  187 (434)
Q Consensus       113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
                      .|.|.|.. +.....+..+...+..-+|+||  .|+.... .+  .+.+.+..........                   
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~-------------------   79 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-------------------   79 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-------------------
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe-------------------
Confidence            57776764 3334444445677889999998  6665544 33  3444444333221111                   


Q ss_pred             ccccCcCCCeEEEEEecCCCEEEEEec-CCcEE--EEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEE
Q 046226          188 DKMMKHMGPITSIAINVSDDTLYSASL-DKTIK--VWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVW  262 (434)
Q Consensus       188 ~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~--vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iw  262 (434)
                          .+........|+|+++.++.... ++...  .+........ .............+++++  .+++...++...+|
T Consensus        80 ----~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~  154 (269)
T d2hqsa1          80 ----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY  154 (269)
T ss_dssp             ----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             ----eeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEe
Confidence                37778889999999998886553 33333  3333333322 222334444455666666  56666666655555


Q ss_pred             ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC-CeEEEEEcCcccccccccCcccCcccceEEEEeeCCE
Q 046226          263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANY  341 (434)
Q Consensus       263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  341 (434)
                      ........     ...............|+|+++.++..+.+ +...+|.............  ......-..++++|+.
T Consensus       155 ~~~~~~~~-----~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~p~~SPDG~~  227 (269)
T d2hqsa1         155 KVNINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS--STFLDETPSLAPNGTM  227 (269)
T ss_dssp             EEETTSSC-----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC--CSSSCEEEEECTTSSE
T ss_pred             eeeccccc-----ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEee--cCccccceEECCCCCE
Confidence            44311111     11223344566778899999988876554 4444444332222222211  1111222344556887


Q ss_pred             EEEecC---CCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226          342 VISGSA---DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG  383 (434)
Q Consensus       342 l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  383 (434)
                      |+..+.   ...|+++++..+    ....+....+.+...+|+|-
T Consensus       228 i~f~s~~~~~~~l~~~~~dg~----~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         228 VIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEETTEEEEEEEETTSC----CEEECCCSSSEEEEEEECCC
T ss_pred             EEEEEcCCCCcEEEEEECCCC----CEEEEeCCCCcEEeEEeCCC
Confidence            664443   357889999865    23445556677788889873

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.75  E-value=2.4e-05  Score=66.81  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=123.8

Q ss_pred             ccEEEEEEeCC-EEEEE-EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226          133 SMVVAMEVSHD-RVYAA-YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY  210 (434)
Q Consensus       133 ~~v~~l~~~~~-~l~~~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  210 (434)
                      ..+..++|.++ .|+.+ ...+.|..|+...........                      ........+++.++|++++
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~----------------------~~~~~p~gla~~~dG~l~v   97 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV----------------------SHKANPAAIKIHKDGRLFV   97 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE----------------------CSSSSEEEEEECTTSCEEE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe----------------------CCCCCeeEEEECCCCCEEE
Confidence            34467778775 34433 357777777765443222211                      2445678999999998877


Q ss_pred             EEec----CCcEEEEEcCCCeeEEEccc--CccCeEEEEEcCCCeEEEEeCC-------CeEEEEecccccCcceeEEEE
Q 046226          211 SASL----DKTIKVWRIRDSKCIETIQA--HSEPINALVVADDGVLYSASDD-------ATVRVWRRYFYSENQLHTLIL  277 (434)
Q Consensus       211 s~~~----dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~  277 (434)
                      +...    .+.|...+............  .......+++.++|.++.+..+       +.+..++..   ........ 
T Consensus        98 a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d---g~~~~~~~-  173 (319)
T d2dg1a1          98 CYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD---FRTVTPII-  173 (319)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT---SCCEEEEE-
T ss_pred             EecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc---cceeEEEe-
Confidence            6543    23455555555443333321  2345778999999955444332       234444433   11111111 


Q ss_pred             EecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCccccccccc-----CcccCcccceEEEEee--CCEEEEecCCC
Q 046226          278 TLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYG-----GALQGHTHAVMCLASV--ANYVISGSADS  349 (434)
Q Consensus       278 ~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~v~~~~~~--~~~l~s~~~dg  349 (434)
                         ......+.++|+++++.|+.+ +..+.|..||+..........     ....+. ...-.++++  |++.++....+
T Consensus       174 ---~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~-~~PdGl~vD~~G~l~Va~~~~g  249 (319)
T d2dg1a1         174 ---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQG  249 (319)
T ss_dssp             ---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTT
T ss_pred             ---eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc-cceeeeeEcCCCCEEEEEcCCC
Confidence               122346789999999876554 668899999986432211110     011111 123455554  77778878899


Q ss_pred             cEEEEeccCCCceeeEEEee------ccccceeEEEEeec
Q 046226          350 TSRVWAREQDGRHTMLAVLV------GHRGPIRCAIAFLG  383 (434)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~------~h~~~v~~~~~~~~  383 (434)
                      .|.+||- .+   +.+..+.      ++...+++++|.++
T Consensus       250 ~V~~~~p-~G---~~l~~i~~P~~~~~~~~~~~~~~~~~~  285 (319)
T d2dg1a1         250 RVLVFNK-RG---YPIGQILIPGRDEGHMLRSTHPQFIPG  285 (319)
T ss_dssp             EEEEECT-TS---CEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             EEEEECC-CC---cEEEEEeCCCcCCCcCceeeeEEEeCC
Confidence            9999996 45   3444443      34456789999887

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=1.5e-05  Score=66.10  Aligned_cols=200  Identities=11%  Similarity=-0.005  Sum_probs=110.7

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCC---cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEE-EeCCCeEEEEecccc
Q 046226          193 HMGPITSIAINVSDDTLYSASLDK---TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYS-ASDDATVRVWRRYFY  267 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s-~~~dg~i~iwd~~~~  267 (434)
                      +...+..-+|+|||+.||-.....   .+.+.+...+.. ..+..+........|+|++ .++. ...++...++.....
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~  115 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  115 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence            566788899999999998665433   467777766554 3444567788899999999 4443 334444444433211


Q ss_pred             cCcceeEEEEEecccccCeEEEEEecCCCEEEE-EcCCCe--EEEEEcCcccccccccCcccCcccceEEEEe--eCCEE
Q 046226          268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG-GCTDGY--IHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYV  342 (434)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l  342 (434)
                      .     .................+++++..++. ...+|.  |.+.++.....  .   .............+  +++.+
T Consensus       116 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~--~---~~~~~~~~~~~~~~spdg~~~  185 (269)
T d2hqsa1         116 S-----GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--Q---RITWEGSQNQDADVSSDGKFM  185 (269)
T ss_dssp             T-----CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC--E---ECCCSSSEEEEEEECTTSSEE
T ss_pred             c-----ccceeeeeccccccccccccccccceecccccCCceEeeeecccccc--e---eeeccccccccccccccccee
Confidence            1     111122223334445566676665444 444554  44444432221  1   11223334444445  46655


Q ss_pred             EEec-CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec---CCeEEEEecCCCCc
Q 046226          343 ISGS-ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL---DGVLKMWRVTRPKS  415 (434)
Q Consensus       343 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~---Dg~v~iw~~~~~~~  415 (434)
                      +..+ ..+...+|.......  . .....+........|+|+         |+.|+-.+.   ...|++|+++.+..
T Consensus       186 ~~~~~~~~~~~i~~~~~~~~--~-~~~~~~~~~~~~p~~SPD---------G~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         186 VMVSSNGGQQHIAKQDLATG--G-VQVLSSTFLDETPSLAPN---------GTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTC--C-EEECCCSSSCEEEEECTT---------SSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             EEEeecCCceeeeEeecccc--c-ceEeecCccccceEECCC---------CCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            5544 445555554443321  1 122344556677889999         887764443   34688999886543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.72  E-value=2.5e-05  Score=66.47  Aligned_cols=241  Identities=8%  Similarity=0.032  Sum_probs=140.1

Q ss_pred             EEEEEE--cCCEEEEEeC-------CCeEEEecCCCceeEeeccCC----CccEEEEEEeCC--EEEEEEcCCeEEEeec
Q 046226           95 ILCIAV--GNGFIYTGSD-------SNVIRIWKQPEFTECGRLKAK----TSMVVAMEVSHD--RVYAAYGDGKIRVWRS  159 (434)
Q Consensus        95 v~~~~~--~~~~l~tg~~-------dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~--~l~~~s~dg~i~vwd~  159 (434)
                      ...++|  +|+++++...       +|.|..||..++.........    ...-..++|.++  .++++...+.|...+.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            345677  6776665432       467889998876654432221    223567999886  6788877777888876


Q ss_pred             CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec---------------CCcEEEEEcC
Q 046226          160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL---------------DKTIKVWRIR  224 (434)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---------------dg~i~vwd~~  224 (434)
                      ..........    ...+              ..-...+.+++.++|++.++-..               +|.|..++.+
T Consensus       100 ~g~~~~~~~~----~~~g--------------~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d  161 (314)
T d1pjxa_         100 DGTFEEIAKK----DSEG--------------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD  161 (314)
T ss_dssp             TSCEEECCSB----CTTS--------------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred             CCcEEEEEec----cccc--------------cccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec
Confidence            5432111000    0000              01123578899999987776422               2345555542


Q ss_pred             CCeeEEEcccCccCeEEEEEcCCC------eEEEEeCCCeEEEEecccccCcceeEEEEEecc-cccCeEEEEEecCCCE
Q 046226          225 DSKCIETIQAHSEPINALVVADDG------VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-KYSPVKTLTLTLDDGL  297 (434)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  297 (434)
                       ++.... ......-+.++|++++      ++++-+..+.|..||+..............+.. .......+++..+|++
T Consensus       162 -g~~~~~-~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gnl  239 (314)
T d1pjxa_         162 -GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL  239 (314)
T ss_dssp             -SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred             -CceeEe-eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcE
Confidence             333222 2233344678888754      344556778899998762211111222222222 2223567999999998


Q ss_pred             EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--C-EEEEecCCCcEEEEeccCC
Q 046226          298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--N-YVISGSADSTSRVWAREQD  359 (434)
Q Consensus       298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~  359 (434)
                      .++....+.|.+||.+......    .+........+++|.+  + ++++.+.+|.|..+++...
T Consensus       240 yVa~~~~g~I~~~dp~~g~~~~----~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         240 LVANWGSSHIEVFGPDGGQPKM----RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCSE----EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEEcCCCEEEEEeCCCCEEEE----EEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            8888888999999865433221    2223334567788853  3 5677778888888887654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.66  E-value=1.8e-05  Score=66.62  Aligned_cols=212  Identities=8%  Similarity=-0.028  Sum_probs=132.9

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGA  179 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  179 (434)
                      ++.+..+--..+.|..||..+++... +. ....+.++++.++ .++.++.+ .+.++|..+++.......   ..    
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~~~~-~~-~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~---~~----   98 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAEL---ES----   98 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECS---ST----
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEEE-EE-CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeee---ec----
Confidence            45566666677889999988876432 22 2446788888776 67777765 488888876643222110   00    


Q ss_pred             eeEEEeccccccCcCCCeEEEEEecCCCEEEEEec----CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEE
Q 046226          180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL----DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSA  253 (434)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~  253 (434)
                                 ......++++.+.++|++.++...    .+.-.+|.+..++...... .-..-+.++|++++  ++++-
T Consensus        99 -----------~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          99 -----------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             -----------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEE
T ss_pred             -----------CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEee
Confidence                       012335788899999987665432    2345667776776544443 33456789999998  56666


Q ss_pred             eCCCeEEEEecccccCc--ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccc
Q 046226          254 SDDATVRVWRRYFYSEN--QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHA  331 (434)
Q Consensus       254 ~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  331 (434)
                      +..+.|..|++......  ..................++++.+|++.++.-..+.|..||... +..    ..+.-....
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G-~~~----~~i~lP~~~  241 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG-NHI----ARYEVPGKQ  241 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC-CEE----EEEECSCSB
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCC-cEe----eEecCCCCc
Confidence            77889999987522221  11222333444555678899999999887777788999998532 111    122222346


Q ss_pred             eEEEEeeC
Q 046226          332 VMCLASVA  339 (434)
Q Consensus       332 v~~~~~~~  339 (434)
                      +++++|-|
T Consensus       242 ~T~~~FGG  249 (295)
T d2ghsa1         242 TTCPAFIG  249 (295)
T ss_dssp             EEEEEEES
T ss_pred             eEEEEEeC
Confidence            78888864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.65  E-value=8.3e-05  Score=63.29  Aligned_cols=226  Identities=11%  Similarity=0.010  Sum_probs=133.0

Q ss_pred             cccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEc-----CCeEEEeecCCCC
Q 046226           92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYG-----DGKIRVWRSTWDN  163 (434)
Q Consensus        92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~-----dg~i~vwd~~~~~  163 (434)
                      ...+..++|  +|++.++-..++.|..|+..+.+....+.........+++.++ .++++..     .+.+...+.....
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            334568889  7888888778899999998877666555555667889999987 5555442     1223333333222


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec------CCcEEEEEcCCCeeEEEcccCcc
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL------DKTIKVWRIRDSKCIETIQAHSE  237 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~  237 (434)
                      ......  .                  ..-......+++.++|++.++...      .+.+..++...+ .+..+...-.
T Consensus       119 ~~~~~~--~------------------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~  177 (319)
T d2dg1a1         119 LQDIIE--D------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNIS  177 (319)
T ss_dssp             CEEEEC--S------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEES
T ss_pred             eeeecc--C------------------CCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccc
Confidence            111110  0                  012335778999999986665432      233555555433 3333333334


Q ss_pred             CeEEEEEcCCC--eEEEEeCCCeEEEEecccccCccee--EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          238 PINALVVADDG--VLYSASDDATVRVWRRYFYSENQLH--TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       238 ~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      ..+.|+|++++  ++++-+..+.|..||+.........  ...............++++.+|++.++....+.|.+||..
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence            56789999998  4566667889999987622111111  1111111222335679999999988888889999999953


Q ss_pred             cccccccc--cCcccCcccceEEEEeeC
Q 046226          314 WFSAQLQY--GGALQGHTHAVMCLASVA  339 (434)
Q Consensus       314 ~~~~~~~~--~~~~~~~~~~v~~~~~~~  339 (434)
                       .+.....  .....++...++++++.+
T Consensus       258 -G~~l~~i~~P~~~~~~~~~~~~~~~~~  284 (319)
T d2dg1a1         258 -GYPIGQILIPGRDEGHMLRSTHPQFIP  284 (319)
T ss_dssp             -SCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             -CcEEEEEeCCCcCCCcCceeeeEEEeC
Confidence             2211111  111224445667888753

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.37  E-value=0.00045  Score=57.79  Aligned_cols=176  Identities=9%  Similarity=-0.043  Sum_probs=105.8

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc----CccCeEEEEEcCCCeEEEEeC-----CCeEEEEe
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA----HSEPINALVVADDGVLYSASD-----DATVRVWR  263 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~-----dg~i~iwd  263 (434)
                      ....+.++++.+++.++++ +.+ .|.++|..+++.......    ....++.+.+.++|.+..++.     .+.-.+|.
T Consensus        57 ~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~  134 (295)
T d2ghsa1          57 LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  134 (295)
T ss_dssp             CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence            3456788999888876665 444 599999998875433221    223578899999994444432     23345555


Q ss_pred             cccccCcceeEEEEEecccccCeEEEEEecCCCEEEE-EcCCCeEEEEEcCcccccc----cccCcccCcccceEEEEee
Q 046226          264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG-GCTDGYIHYWHKGWFSAQL----QYGGALQGHTHAVMCLASV  338 (434)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~v~~~~~~  338 (434)
                      +.   ........    ......+.++|+++++.++. -+..+.|..|++.......    .......+.......+.++
T Consensus       135 ~~---~g~~~~~~----~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD  207 (295)
T d2ghsa1         135 VA---KGKVTKLF----ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD  207 (295)
T ss_dssp             EE---TTEEEEEE----EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC
T ss_pred             ec---CCcEEEEe----eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEc
Confidence            44   11111111    12235678999999986654 4567899999875332211    1111122233345566665


Q ss_pred             --CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226          339 --ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF  381 (434)
Q Consensus       339 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  381 (434)
                        |++.++.-..+.|..||.. +   +.+..+.--...+++++|-
T Consensus       208 ~~GnlWva~~~~g~V~~~dp~-G---~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         208 AEGHIWNARWGEGAVDRYDTD-G---NHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             TTSCEEEEEETTTEEEEECTT-C---CEEEEEECSCSBEEEEEEE
T ss_pred             CCCCEEeeeeCCCceEEecCC-C---cEeeEecCCCCceEEEEEe
Confidence              6666666667889999964 4   4555555444568999996

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=0.00023  Score=63.83  Aligned_cols=134  Identities=13%  Similarity=0.120  Sum_probs=82.4

Q ss_pred             eCCCeEEEecCCCceeEeeccC---CCccEEEEEEeCC--EEEEEEc---------CCeEEEeecCCCCCceeeEeeecc
Q 046226          109 SDSNVIRIWKQPEFTECGRLKA---KTSMVVAMEVSHD--RVYAAYG---------DGKIRVWRSTWDNGVKHVKLATIP  174 (434)
Q Consensus       109 ~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~--~l~~~s~---------dg~i~vwd~~~~~~~~~~~~~~~~  174 (434)
                      ..+|.|.+||+.+++....+..   ....+....++||  .++.+..         .+.+.++|+.++........    
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~----  109 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP----  109 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT----
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCc----
Confidence            4567899999887665433332   2335677789998  5555432         46778888876543221100    


Q ss_pred             CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-CccC---------------
Q 046226          175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-HSEP---------------  238 (434)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~---------------  238 (434)
                                      ......+....|+|||+.|+-.. ++.|.+.+..++..++.... ..+.               
T Consensus       110 ----------------~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~  172 (465)
T d1xfda1         110 ----------------EVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (465)
T ss_dssp             ----------------TCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             ----------------cCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhc
Confidence                            01334456678999999998876 67899999877765544332 1111               


Q ss_pred             --eEEEEEcCCC-eEEEEe-CCCeEEEEe
Q 046226          239 --INALVVADDG-VLYSAS-DDATVRVWR  263 (434)
Q Consensus       239 --v~~~~~~~~~-~l~s~~-~dg~i~iwd  263 (434)
                        -..+.|+||| .|+... .+..|..+.
T Consensus       173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~  201 (465)
T d1xfda1         173 KTHIAHWWSPDGTRLAYAAINDSRVPIME  201 (465)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             cccceEEECCCCCeEEEEEecccccceee
Confidence              2467899999 666554 334444443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.11  E-value=0.00055  Score=56.50  Aligned_cols=96  Identities=10%  Similarity=0.084  Sum_probs=59.3

Q ss_pred             EEecC--CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCC-----eEEEEecccccCcc
Q 046226          201 AINVS--DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDA-----TVRVWRRYFYSENQ  271 (434)
Q Consensus       201 ~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg-----~i~iwd~~~~~~~~  271 (434)
                      ..+|+  |+.++-.+ +|.|.+.|+.+++.. .+..+.+.+....|+||| .|+... .++     .|.+++..  .. .
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~--~g-~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE--NG-E   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT--TT-E
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec--CC-c
Confidence            35688  88887665 567999999888754 555567778899999999 555432 222     35555543  11 1


Q ss_pred             eeEEE---EEecccccCeEEEEEecCCCEEEEE
Q 046226          272 LHTLI---LTLTAKYSPVKTLTLTLDDGLLYGG  301 (434)
Q Consensus       272 ~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~  301 (434)
                      ...+.   ..............|+|+|+.|+..
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            11110   0111122345678899999988765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=0.0046  Score=55.10  Aligned_cols=297  Identities=7%  Similarity=-0.062  Sum_probs=140.9

Q ss_pred             cCCEEEEEe---------CCCeEEEecCCCceeEee--ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCcee
Q 046226          101 GNGFIYTGS---------DSNVIRIWKQPEFTECGR--LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus       101 ~~~~l~tg~---------~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      |+++|+...         ..+.+.++|+.++.....  .......+....|+|+  .++-.. ++.|.+.+...+..++.
T Consensus        71 D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~l  149 (465)
T d1xfda1          71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRV  149 (465)
T ss_dssp             TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEE
T ss_pred             CCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEE
Confidence            788777653         357888999988765432  2233445666789998  555544 67788888766544333


Q ss_pred             eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEE---------------------------
Q 046226          168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIK---------------------------  219 (434)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~---------------------------  219 (434)
                      ..-    .....+..-...-.......+.-..+-|+|||++|+.... +..|.                           
T Consensus       150 t~~----g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~n  225 (465)
T d1xfda1         150 VST----GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN  225 (465)
T ss_dssp             ECC----CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred             ecc----cCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCC
Confidence            210    0001111000000000001122357789999999987643 23333                           


Q ss_pred             ------EEEcCCCeeEEEc------ccCccCeEEEEEcCCCe-EEE-EeCC---CeEEEEecccccCcceeEEEEEeccc
Q 046226          220 ------VWRIRDSKCIETI------QAHSEPINALVVADDGV-LYS-ASDD---ATVRVWRRYFYSENQLHTLILTLTAK  282 (434)
Q Consensus       220 ------vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~-l~s-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~  282 (434)
                            ++|+.++......      ......+..+.|.+++. ++. ...+   ..|.++|...  + .........  .
T Consensus       226 p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~t--g-~~~~~~~e~--~  300 (465)
T d1xfda1         226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT--G-VCTKKHEDE--S  300 (465)
T ss_dssp             CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT--C-CEEEEEEEE--C
T ss_pred             CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCC--C-cEEEEEEEc--C
Confidence                  3333332211111      01122467788999883 333 2222   2466666652  1 122222111  1


Q ss_pred             ccC----eEEEEEecCCCEEE---EEcCCC--eEEEEEcCccc--ccccccCcccCcccceEEE-Eee--CCE-EEEecC
Q 046226          283 YSP----VKTLTLTLDDGLLY---GGCTDG--YIHYWHKGWFS--AQLQYGGALQGHTHAVMCL-ASV--ANY-VISGSA  347 (434)
Q Consensus       283 ~~~----v~~~~~~~~~~~l~---~~~~dg--~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~-~~~--~~~-l~s~~~  347 (434)
                      ...    -....|+++|+.++   ....+|  .+..+++....  ........+....-.|..+ .++  ++. .+++..
T Consensus       301 ~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~  380 (465)
T d1xfda1         301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE  380 (465)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred             CceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC
Confidence            111    13457888887533   222333  34433332111  1111112222223334443 354  443 334443


Q ss_pred             CC--cEEEEec--cCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec---CCeEEEEecCCCCcc
Q 046226          348 DS--TSRVWAR--EQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL---DGVLKMWRVTRPKSS  416 (434)
Q Consensus       348 dg--~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~---Dg~v~iw~~~~~~~~  416 (434)
                      ++  .-++|.+  ..+...+++............+.|+|+         +++++-...   --.+.+++..+++.+
T Consensus       381 ~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~---------~~y~v~~~s~~~~P~~~~~~~~~~~~~  447 (465)
T d1xfda1         381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHS---------MDFFLLKCEGPGVPMVTVHNTTDKKKM  447 (465)
T ss_dssp             SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTT---------SSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred             CCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCC---------CCEEEEEeecCCCCeEEEEECCCCCEE
Confidence            32  3345544  333222333322234456678999998         777763332   245777777666643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.84  E-value=0.0022  Score=55.61  Aligned_cols=106  Identities=10%  Similarity=0.045  Sum_probs=61.7

Q ss_pred             cCCEEEEEeCCC-----------eEEEecCCCceeEe--e-ccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCC
Q 046226          101 GNGFIYTGSDSN-----------VIRIWKQPEFTECG--R-LKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDN  163 (434)
Q Consensus       101 ~~~~l~tg~~dg-----------~i~iwd~~~~~~~~--~-~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~  163 (434)
                      +|++++.|+.+.           .+.+||..+++-..  . ...+.......++.++  .++.|+. ...+.+||..+..
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence            788888887531           37799998754221  1 1223333344556666  4444433 3689999987653


Q ss_pred             CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC------CcEEEEEcCCCe
Q 046226          164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD------KTIKVWRIRDSK  227 (434)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~  227 (434)
                      ....-   ..                  .....-..++..+|++.++.|+.+      ..+.+||..+.+
T Consensus       110 w~~~~---~~------------------~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         110 WIPGP---DM------------------QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEECC---CC------------------SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ccccc---cc------------------cccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            32111   00                  112223456667889999888753      368999998765

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.82  E-value=0.01  Score=54.27  Aligned_cols=168  Identities=13%  Similarity=-0.011  Sum_probs=93.9

Q ss_pred             EEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCC----ccEE-EEEEeCCEEEEEEc------CCeEEEeecCCCCCce
Q 046226           98 IAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT----SMVV-AMEVSHDRVYAAYG------DGKIRVWRSTWDNGVK  166 (434)
Q Consensus        98 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~----~~v~-~l~~~~~~l~~~s~------dg~i~vwd~~~~~~~~  166 (434)
                      +++.+..|+.++.||.+.-.|.++++.+.......    ..++ .-.+..+.++.+..      +|.|+-+|+.+++.+.
T Consensus       111 ~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  190 (571)
T d2ad6a1         111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             ceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEE
Confidence            45656678888899999999999998876653211    1111 11233456666653      6889999999998877


Q ss_pred             eeEeeeccCC------CCce----eEEEe-----ccccccCcCCCe-EEEEEecCCCEEEEEec----------------
Q 046226          167 HVKLATIPKT------GGAV----RNLIV-----GKDKMMKHMGPI-TSIAINVSDDTLYSASL----------------  214 (434)
Q Consensus       167 ~~~~~~~~~~------~~~~----~~~~~-----~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~----------------  214 (434)
                      .......+..      ....    .....     ...........+ ...++.++..+++.+..                
T Consensus       191 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~  270 (571)
T d2ad6a1         191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccc
Confidence            6643211000      0000    00000     000000011112 23455566666665543                


Q ss_pred             CCcEEEEEcCCCeeEEEcccCccCe---------EEEEEcCCC----eEEEEeCCCeEEEEecc
Q 046226          215 DKTIKVWRIRDSKCIETIQAHSEPI---------NALVVADDG----VLYSASDDATVRVWRRY  265 (434)
Q Consensus       215 dg~i~vwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~----~l~s~~~dg~i~iwd~~  265 (434)
                      ...+...|.++|+.+..++.....+         ....+..++    .++.++.+|.+.++|..
T Consensus       271 s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             ccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence            3468888999999888776432211         111222233    46778888999998865

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=0.0063  Score=49.28  Aligned_cols=209  Identities=10%  Similarity=0.074  Sum_probs=127.2

Q ss_pred             EEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226          199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILT  278 (434)
Q Consensus       199 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  278 (434)
                      +.-.+|..+.|+.-+ ..++.++|+++.+.++.+.- ...|.--.|-.+..|+..+. ..|+-|++..  .. .......
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT~-taVYHW~~~g--~s-~P~k~fd  140 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVTD-NAVYHWSMEG--ES-QPVKMFD  140 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSSEEEEECS-SEEEEEESSS--SC-CCEEEEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCCEEEEEcC-CceEEEcccC--CC-Cchhhhh
Confidence            344567777777655 56899999999998888774 44666677777775555544 4699999862  11 1222222


Q ss_pred             ec--ccccCeEEEEEecCCCEEEEEc-------CCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-----EEEE
Q 046226          279 LT--AKYSPVKTLTLTLDDGLLYGGC-------TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-----YVIS  344 (434)
Q Consensus       279 ~~--~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~s  344 (434)
                      ..  -....|-....+++.++++..+       -.|.+.+|..+..     ..+.++||.+.-..+..+|+     .++.
T Consensus       141 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f  215 (327)
T d1utca2         141 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCF  215 (327)
T ss_dssp             CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECCTTCSSCEEEEEE
T ss_pred             hcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-----cCccccceeeeeEEEEcCCCCCCceEEEE
Confidence            11  1234566777788888876543       2467888876432     22355677665555555433     2322


Q ss_pred             e---cCCCcEEEEeccCCCc---e---eeEEEee---ccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226          345 G---SADSTSRVWAREQDGR---H---TMLAVLV---GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR  412 (434)
Q Consensus       345 ~---~~dg~i~iwd~~~~~~---~---~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~  412 (434)
                      +   ...+.++|.++.....   .   +.+..+-   .-.+-..++..++.         ..++..-+.-|.|+++|+++
T Consensus       216 a~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~k---------ygiiyviTK~G~i~lyDleT  286 (327)
T d1utca2         216 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK---------HDVVFLITKYGYIHLYDLET  286 (327)
T ss_dssp             EEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETT---------TTEEEEEETTSEEEEEETTT
T ss_pred             EECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeecc---------CCEEEEEecCcEEEEEEccc
Confidence            2   2346899998876321   0   1111111   11233456777766         67888889999999999999


Q ss_pred             CCccccccccccCceeE
Q 046226          413 PKSSCGHLNKTNGHEYF  429 (434)
Q Consensus       413 ~~~~~~~~~~~~g~~~~  429 (434)
                      +..+.  .++.++...|
T Consensus       287 gt~i~--~nRIs~~~iF  301 (327)
T d1utca2         287 GTCIY--MNRISGETIF  301 (327)
T ss_dssp             CCEEE--EEECCSSCEE
T ss_pred             ccEEE--EeecCCCceE
Confidence            98764  3444444433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.73  E-value=0.016  Score=52.89  Aligned_cols=138  Identities=8%  Similarity=-0.011  Sum_probs=78.9

Q ss_pred             CCcccceeeeEEEeec-cccEE--EEEEcCCEEEEEe-CCCeEEEecC-CCceeEeeccCCC-----------ccEEEEE
Q 046226           76 PETSSSYRCISSVLKK-DGQIL--CIAVGNGFIYTGS-DSNVIRIWKQ-PEFTECGRLKAKT-----------SMVVAME  139 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~h-~~~v~--~~~~~~~~l~tg~-~dg~i~iwd~-~~~~~~~~~~~~~-----------~~v~~l~  139 (434)
                      ..+++..+...++..- ...+.  =+. .+..|++++ .++.|...|. ++++.+.+++...           ..-..++
T Consensus        34 ~~Nv~~L~~aW~~~~g~~~~~~~tP~v-~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a  112 (571)
T d2ad6a1          34 KSNVKNVKAAWSFSTGVLNGHEGAPLV-IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLA  112 (571)
T ss_dssp             TTTGGGCEEEEEEECSCCSCCCSCCEE-ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCE
T ss_pred             HhHhhhceEEEEEeCCCCCCcccCCEE-ECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcce
Confidence            4455555665555321 11111  111 344445544 4678888887 4688887764211           0113467


Q ss_pred             EeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe------
Q 046226          140 VSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS------  213 (434)
Q Consensus       140 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------  213 (434)
                      +..+.++.++.||.+.-.|.++++......+....                  ....++.--... +..++.+.      
T Consensus       113 ~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~------------------~~~~~t~~p~v~-~~~vivg~~~~~~~  173 (571)
T d2ad6a1         113 YGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPK------------------VGSTLTQAPFVA-KDTVLMGCSGAELG  173 (571)
T ss_dssp             EETTEEEEECTTSEEEEEETTTCCEEEEEECCCGG------------------GTCBCCSCCEEE-TTEEEEECBCGGGT
T ss_pred             eeCCeEEEEeCCCcEEeeehhhhhhhccccccccc------------------cccceeecCeEe-CCeEEEeecccccc
Confidence            77889999999999999999988876655432110                  000111100111 23344443      


Q ss_pred             cCCcEEEEEcCCCeeEEEcc
Q 046226          214 LDKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       214 ~dg~i~vwd~~~~~~~~~~~  233 (434)
                      .+|.|+-+|+.+|+.+.++.
T Consensus       174 ~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         174 VRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             CCCEEEEEETTTCCEEEEEE
T ss_pred             ccCcEEEEECCCCcEEEEEe
Confidence            36789999999999988754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.56  E-value=0.01  Score=48.31  Aligned_cols=59  Identities=3%  Similarity=-0.035  Sum_probs=38.9

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc-CC-----eEEEeecCCC
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG-DG-----KIRVWRSTWD  162 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg-----~i~vwd~~~~  162 (434)
                      |+.+|-.+ +|.|.+.|+.+++.. .+..+.+.+...+|+||  .|+.... ++     .|.+++...+
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            77776554 467888899887754 56667778899999998  5554432 22     3555555444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.022  Score=46.13  Aligned_cols=219  Identities=9%  Similarity=0.018  Sum_probs=126.1

Q ss_pred             CCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226          131 KTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD  207 (434)
Q Consensus       131 ~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  207 (434)
                      +...+..|+|+..  .++-+. .++.|+..+++.........                      .....+..+++..-++
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~----------------------~~~~~p~~iAvD~~~~   91 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----------------------QDLGSPEGIALDHLGR   91 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----------------------TTCCCEEEEEEETTTT
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE----------------------eccccccEEEEeccCC
Confidence            4445777888753  565554 46777777775443322220                      1234578899987666


Q ss_pred             EEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCCeEEEEecccccCcceeEEEEEeccccc
Q 046226          208 TLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDATVRVWRRYFYSENQLHTLILTLTAKYS  284 (434)
Q Consensus       208 ~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  284 (434)
                      .|+.+ ...+.|.+.++........+.........+++.|.. +++ +-...+..+|+..... +..... +  ....-.
T Consensus        92 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d-G~~~~~-i--~~~~~~  167 (263)
T d1npea_          92 TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRI-L--AQDNLG  167 (263)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEE-E--ECTTCS
T ss_pred             eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC-CCCcee-e--eeeccc
Confidence            66644 456799999987654433333334678899998866 444 3322233345433311 111111 1  122334


Q ss_pred             CeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe-cCCCcEEEEeccCCCce
Q 046226          285 PVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG-SADSTSRVWAREQDGRH  362 (434)
Q Consensus       285 ~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~  362 (434)
                      ....+++++.++.|+.+ ...+.|...|+.........    .+-. ...+++..+++|... ...+.|...|..++   
T Consensus       168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~----~~~~-~P~~lav~~~~lYwtd~~~~~I~~~~~~~g---  239 (263)
T d1npea_         168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL----EGLQ-YPFAVTSYGKNLYYTDWKTNSVIAMDLAIS---  239 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE----ECCC-SEEEEEEETTEEEEEETTTTEEEEEETTTT---
T ss_pred             ccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE----CCCC-CcEEEEEECCEEEEEECCCCEEEEEECCCC---
Confidence            66889999877777555 56789999998654332211    1211 235788777765544 46678888888876   


Q ss_pred             eeEEEee-ccccceeEEEEeec
Q 046226          363 TMLAVLV-GHRGPIRCAIAFLG  383 (434)
Q Consensus       363 ~~~~~~~-~h~~~v~~~~~~~~  383 (434)
                      +.+..+. ........+++.++
T Consensus       240 ~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         240 KEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EEEEEECCSSCCCCCCEEEECS
T ss_pred             ccceEECCCCCCCcceEEEeCC
Confidence            4444332 33344556666554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.38  E-value=0.047  Score=49.58  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=25.4

Q ss_pred             EEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeec
Q 046226          335 LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG  370 (434)
Q Consensus       335 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (434)
                      ++-.+.++++|+.||.++.+|.+++   +.+-++.-
T Consensus       465 l~TagglVF~G~~dg~l~A~Da~tG---e~LW~~~l  497 (560)
T d1kv9a2         465 LSTAGNLVFQGTAAGQMHAYSADKG---EALWQFEA  497 (560)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTC---CEEEEEEC
T ss_pred             eEECCCEEEEECCCCcEEEEECCCC---cEeEEEEC
Confidence            3445778889999999999999999   55555443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.032  Score=45.18  Aligned_cols=222  Identities=15%  Similarity=0.085  Sum_probs=127.2

Q ss_pred             CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226          112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD  188 (434)
Q Consensus       112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
                      ..|+-.++.+......+. ....+.+++|+..  .++-+. .++.|.-.++..........            .+.    
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~------------~~~----   72 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD------------TVI----   72 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE------------EEE----
T ss_pred             CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceE------------EEE----
Confidence            357778887654433333 4456788998864  555554 35666655554321111110            000    


Q ss_pred             cccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe--CCCeEEEEec
Q 046226          189 KMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS--DDATVRVWRR  264 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~--~dg~i~iwd~  264 (434)
                        ......+..+++.+.++.|+.+ ...+.|.+.++........+.........+++.|.. +|+-..  ..+.|...++
T Consensus        73 --~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~  150 (266)
T d1ijqa1          73 --SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  150 (266)
T ss_dssp             --CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             --eCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEecc
Confidence              0233456788888766666655 456789999998766555555555678899998854 444333  3445666655


Q ss_pred             ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226          265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI  343 (434)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  343 (434)
                      .   +......   ....-.....+++++.++.|+.+ ...+.|...|+.........  ..........+++..+++|.
T Consensus       151 d---Gs~~~~l---~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~--~~~~~~~~p~~lav~~~~ly  222 (266)
T d1ijqa1         151 N---GVDIYSL---VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL--EDEKRLAHPFSLAVFEDKVF  222 (266)
T ss_dssp             T---SCCEEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--ECTTTTSSEEEEEEETTEEE
T ss_pred             C---CCceecc---cccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEE--eCCCcccccEEEEEECCEEE
Confidence            4   2221111   12233557889999877766655 55789999898644322111  11222234567888877655


Q ss_pred             Ee-cCCCcEEEEeccCCC
Q 046226          344 SG-SADSTSRVWAREQDG  360 (434)
Q Consensus       344 s~-~~dg~i~iwd~~~~~  360 (434)
                      .. ..++.|+..+..++.
T Consensus       223 ~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         223 WTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEETTTTEEEEEETTTCC
T ss_pred             EEECCCCeEEEEECCCCc
Confidence            55 466788888877763

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.25  E-value=0.046  Score=46.66  Aligned_cols=193  Identities=10%  Similarity=0.032  Sum_probs=112.1

Q ss_pred             EEEE-----cCCEEEEEe-CCCeEEEecCCCceeEeeccC-CCccEEEEEEeC--C--EEEEEEcCC-------------
Q 046226           97 CIAV-----GNGFIYTGS-DSNVIRIWKQPEFTECGRLKA-KTSMVVAMEVSH--D--RVYAAYGDG-------------  152 (434)
Q Consensus        97 ~~~~-----~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~--~--~l~~~s~dg-------------  152 (434)
                      .+++     ||++|++.. .++.|.+.|+.+.+....+.. ....+..+...+  +  +++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            5666     688888776 577999999999887654332 234567666654  3  666665532             


Q ss_pred             -----eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC-----------
Q 046226          153 -----KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK-----------  216 (434)
Q Consensus       153 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----------  216 (434)
                           .+.++|..+.+....+.                       -......+.++++|+++++.+.+.           
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~-----------------------V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta  225 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVL-----------------------VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA  225 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEE-----------------------ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEee-----------------------eCCChhccccCCCCCEEEEEeccccCCcchhhccc
Confidence                 23445554433333222                       223455678889999888876432           


Q ss_pred             ---------------------------cEEEEEcCCC---eeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEec
Q 046226          217 ---------------------------TIKVWRIRDS---KCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRR  264 (434)
Q Consensus       217 ---------------------------~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~  264 (434)
                                                 .+.+.|.++.   ..+..+.. ......+.++|||  .++++..+.++.++|+
T Consensus       226 ~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~  304 (459)
T d1fwxa2         226 AEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV  304 (459)
T ss_dssp             CSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred             ccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEe
Confidence                                       1233333211   11111211 1234578899999  5566667899999998


Q ss_pred             ccccCc-----ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226          265 YFYSEN-----QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG  313 (434)
Q Consensus       265 ~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  313 (434)
                      +.....     .....+.......-....-+|+..|+-..+---|..|.-|++.
T Consensus       305 ~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         305 TRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             GGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             hhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            622111     0111111112223345567888888666666789999999985

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.20  E-value=0.078  Score=48.37  Aligned_cols=67  Identities=10%  Similarity=0.071  Sum_probs=46.8

Q ss_pred             cCCEEEEEeCCCeEEEecCCCceeEeeccCC---------CccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCcee
Q 046226          101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAK---------TSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus       101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      .+..|++++.++.|.-.|..+++.+-++...         ...-..+++..+.++.++.|+.+...|..+++.+..
T Consensus        67 ~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~~W~  142 (582)
T d1flga_          67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWK  142 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred             ECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEecccccceeee
Confidence            4566777788888888899999888775321         011124556677888888888888888877766543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.20  E-value=0.038  Score=44.68  Aligned_cols=249  Identities=10%  Similarity=0.055  Sum_probs=142.0

Q ss_pred             CCeEEEecCCCceeEee-ccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226          111 SNVIRIWKQPEFTECGR-LKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD  188 (434)
Q Consensus       111 dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
                      ...|.|.|+.+...+.+ --..    -+.-.+|. .+++--....+.++|+++.+.++...                   
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALrag~~LQiFnletK~klks~~-------------------  100 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT-------------------  100 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEE-------------------
T ss_pred             CceEEEEECCCCCcceecccch----hhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEE-------------------
Confidence            35788888876543222 1111    12234565 33333336789999999887777764                   


Q ss_pred             cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCc----cCeEEEEEcCCC-e-EEEE--eC----
Q 046226          189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHS----EPINALVVADDG-V-LYSA--SD----  255 (434)
Q Consensus       189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~-~-l~s~--~~----  255 (434)
                          ...+|.-=.|- +.+.|+-.+ +..|+-|+++.. .+.+.+..|.    ..|..-..+++. + +++|  ..    
T Consensus       101 ----~~e~VvfWkWi-s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i  174 (327)
T d1utca2         101 ----MTDDVTFWKWI-SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV  174 (327)
T ss_dssp             ----CSSCCCEEEES-SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEE
T ss_pred             ----cCCCcEEEEec-CCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCce
Confidence                44556666665 345566655 467999999542 4666666553    356666677777 3 3333  12    


Q ss_pred             CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC---CEEEE---EcCCCeEEEEEcCcccc-cccc-------
Q 046226          256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD---GLLYG---GCTDGYIHYWHKGWFSA-QLQY-------  321 (434)
Q Consensus       256 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~---~~~dg~i~i~d~~~~~~-~~~~-------  321 (434)
                      .|.+.+|...       ......+.+|.+....+.+..+.   ..++.   +...++++|.++..... ...+       
T Consensus       175 ~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi  247 (327)
T d1utca2         175 VGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV  247 (327)
T ss_dssp             EEEEEEEETT-------TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEEC
T ss_pred             eEEEEEEEec-------cCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEE
Confidence            3667788765       22233444554433333322111   12222   23347899999875321 1111       


Q ss_pred             cCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226          322 GGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG  399 (434)
Q Consensus       322 ~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~  399 (434)
                      ........+-..++..+.+  .+..-+.-|.|++||++++   .++..-+-..+.|...+-...         ..=++..
T Consensus       248 ~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs~~~iF~~a~~~~---------~~Gi~~V  315 (327)
T d1utca2         248 FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGETIFVTAPHEA---------TAGIIGV  315 (327)
T ss_dssp             CCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEETT---------TTEEEEE
T ss_pred             ECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc---cEEEEeecCCCceEEeccCCC---------CceEEEE
Confidence            0111122334466777654  7778888999999999998   777776666777765554443         3335555


Q ss_pred             ecCCeEEE
Q 046226          400 SLDGVLKM  407 (434)
Q Consensus       400 ~~Dg~v~i  407 (434)
                      ..+|.|.-
T Consensus       316 Nr~GqVl~  323 (327)
T d1utca2         316 NRKGQVLS  323 (327)
T ss_dssp             ETTSEEEE
T ss_pred             CCCCeEEE
Confidence            57777654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.08  E-value=0.1  Score=47.58  Aligned_cols=163  Identities=12%  Similarity=0.028  Sum_probs=92.7

Q ss_pred             CEEEEEeCCCeEEEecCCCceeEeeccCCCc----cE-EEEEEeCCEEEEEEc------CCeEEEeecCCCCCceeeEee
Q 046226          103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTS----MV-VAMEVSHDRVYAAYG------DGKIRVWRSTWDNGVKHVKLA  171 (434)
Q Consensus       103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~----~v-~~l~~~~~~l~~~s~------dg~i~vwd~~~~~~~~~~~~~  171 (434)
                      .+++.++.|+.|.-.|.++++.+..+.....    .+ ..-.+..+.++++..      .|.|+-+|+.+++.+..+...
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            4788899999999999999998887643211    11 112344567777654      489999999999988776432


Q ss_pred             eccC-----CCCcee-----EE------EeccccccCcCCCeEEEEEecCCCEEEEEec----------------CCcEE
Q 046226          172 TIPK-----TGGAVR-----NL------IVGKDKMMKHMGPITSIAINVSDDTLYSASL----------------DKTIK  219 (434)
Q Consensus       172 ~~~~-----~~~~~~-----~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----------------dg~i~  219 (434)
                      ....     ......     ..      ..+.....+....-..+++.+...+++.+..                ...|.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            1000     000000     00      0000000011111223455666666665533                23588


Q ss_pred             EEEcCCCeeEEEcccCcc---------CeEEEEE-cCCC----eEEEEeCCCeEEEEecc
Q 046226          220 VWRIRDSKCIETIQAHSE---------PINALVV-ADDG----VLYSASDDATVRVWRRY  265 (434)
Q Consensus       220 vwd~~~~~~~~~~~~~~~---------~v~~~~~-~~~~----~l~s~~~dg~i~iwd~~  265 (434)
                      ..|+++|+.+..++....         ....+.. ..++    .++....+|.+.++|..
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~  341 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT  341 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT
T ss_pred             ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCC
Confidence            899999998887764211         1222222 2233    57778889999999876

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.06  E-value=0.073  Score=45.42  Aligned_cols=230  Identities=12%  Similarity=0.074  Sum_probs=126.6

Q ss_pred             EEEEeCCCeEEEecCCCceeEeeccCCC---------------------------------------ccE--EEEEEeC-
Q 046226          105 IYTGSDSNVIRIWKQPEFTECGRLKAKT---------------------------------------SMV--VAMEVSH-  142 (434)
Q Consensus       105 l~tg~~dg~i~iwd~~~~~~~~~~~~~~---------------------------------------~~v--~~l~~~~-  142 (434)
                      +.+|+..|.|+|+-+.+++.+..+....                                       +..  ..+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5678889999999888877766542110                                       000  1344433 


Q ss_pred             --C--EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe--cCCCEEEEEecC
Q 046226          143 --D--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN--VSDDTLYSASLD  215 (434)
Q Consensus       143 --~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d  215 (434)
                        |  ++++.. .+++|.+.|++..+..+...+   |                  ....+..+...  |...+++.++.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i---P------------------n~~~~HG~r~~~~p~T~YV~~~~e~  154 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEI---P------------------NAKGIHGLRPQKWPRSNYVFCNGED  154 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC---S------------------SCCSEEEEEECCSSBCSEEEEEECS
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEec---C------------------CCCCCceeecccCCCeEEEEccCcc
Confidence              2  444444 588899999887665444432   1                  22334444443  334556555542


Q ss_pred             ------------------CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCC---------------eEEE
Q 046226          216 ------------------KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDA---------------TVRV  261 (434)
Q Consensus       216 ------------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg---------------~i~i  261 (434)
                                        +.+.++|.++.+....+... +....+.++++| ++++.+.+.               .+.+
T Consensus       155 ~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V  233 (459)
T d1fwxa2         155 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVV  233 (459)
T ss_dssp             CEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred             ccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEE
Confidence                              23678899888877766533 346678999999 555544321               2444


Q ss_pred             Eecccc------------c--------CcceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCccccccc
Q 046226          262 WRRYFY------------S--------ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQLQ  320 (434)
Q Consensus       262 wd~~~~------------~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~  320 (434)
                      +++...            .        ..........+ .-......+.++|||+++++++ .+.++.++|++.......
T Consensus       234 ~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yI-PVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~  312 (459)
T d1fwxa2         234 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYI-PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY  312 (459)
T ss_dssp             EEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEE-EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH
T ss_pred             echHHhHHhhhcCCcEEeCCceeecccccCCcceeEEE-ecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhc
Confidence            443200            0        00000000011 1112355789999999987765 488999999864322211


Q ss_pred             ----cc----CcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccC
Q 046226          321 ----YG----GALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQ  358 (434)
Q Consensus       321 ----~~----~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~  358 (434)
                          ..    ...... -.-.--+|+++  ...+---|..|.-|++..
T Consensus       313 ~~~~~~~~~~~e~elg-lgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         313 ENADPRSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             SCC-GGGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccCCccccEEeecccC-cCccccccCCCceEEEEeeccceEEEEecch
Confidence                00    000000 11234456644  556667899999999853

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.088  Score=42.46  Aligned_cols=203  Identities=10%  Similarity=-0.021  Sum_probs=116.2

Q ss_pred             cCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCCe----eEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecc
Q 046226          193 HMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDSK----CIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRY  265 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~  265 (434)
                      ....+..++|++..+.|+-.. .++.|...++....    ....+......+..|++...+  +.++-...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            445678899998888777654 45667766664321    112222233456678886544  55555677889999887


Q ss_pred             cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc--CCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCE
Q 046226          266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC--TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANY  341 (434)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  341 (434)
                         +.....   ...........++++|...+|+...  ..+.|.-.++.........    ...-....+++.+  ++.
T Consensus       108 ---g~~~~~---~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~----~~~~~~p~gl~iD~~~~~  177 (266)
T d1ijqa1         108 ---GVKRKT---LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----TENIQWPNGITLDLLSGR  177 (266)
T ss_dssp             ---SSSEEE---EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE----CSSCSCEEEEEEETTTTE
T ss_pred             ---CceEEE---EEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc----ccccceeeEEEeeccccE
Confidence               222221   2223345678999999666665543  3456766666533222111    1122334566665  454


Q ss_pred             -EEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226          342 -VISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS  416 (434)
Q Consensus       342 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~  416 (434)
                       .++-...+.|...++..... ..+...........++++..          +.+.++-..++.|...+..+++..
T Consensus       178 lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~~----------~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         178 LYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE----------DKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             EEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET----------TEEEEEETTTTEEEEEETTTCCCC
T ss_pred             EEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEEC----------CEEEEEECCCCeEEEEECCCCcce
Confidence             44446678899889875432 23322222233456677763          345666567788888887777644

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.1  Score=41.98  Aligned_cols=199  Identities=10%  Similarity=0.001  Sum_probs=115.7

Q ss_pred             EeeccccEEEEEE--cCC-EEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC--CEEEEEE-cCCeEEEeecCC
Q 046226           88 VLKKDGQILCIAV--GNG-FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH--DRVYAAY-GDGKIRVWRSTW  161 (434)
Q Consensus        88 ~~~h~~~v~~~~~--~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~s-~dg~i~vwd~~~  161 (434)
                      +..+...+.+++|  .++ +.++-..++.|+..++........+......+.++++..  +.|+.+. ..+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            3344556888888  344 555556678898888766554444443345678888864  4666554 467888888764


Q ss_pred             CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC-C--cEEEEEcCCCeeEEEcccCccC
Q 046226          162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD-K--TIKVWRIRDSKCIETIQAHSEP  238 (434)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~  238 (434)
                      .......                      .........+++.|...+++..... +  .|..-++............-..
T Consensus       111 ~~~~~l~----------------------~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~  168 (263)
T d1npea_         111 TQRRVLF----------------------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL  168 (263)
T ss_dssp             CSCEEEE----------------------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred             ceEEEEe----------------------cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccc
Confidence            4321111                      0123567899999988777755432 2  3544556543333323333346


Q ss_pred             eEEEEEcCCC-eE-EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226          239 INALVVADDG-VL-YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS  316 (434)
Q Consensus       239 v~~~~~~~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  316 (434)
                      ...|++.+.+ .| ++-...+.|...|+.   +......   ..+. .....+++. ++.+.++-...+.|...|.....
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~---g~~~~~v---~~~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPA---QPGRRKV---LEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEEE---EECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECC---CCCeEEE---ECCC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCc
Confidence            6789998766 45 444567889888876   1111111   2222 234577775 34444555567888888875443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.55  E-value=0.27  Score=44.71  Aligned_cols=138  Identities=11%  Similarity=-0.028  Sum_probs=78.5

Q ss_pred             CCcccceeeeEEEeecc-c--cEEEEEEcCCEEEEEeCCCeEEEecC-CCceeEeeccCCCc-----------cEEEEEE
Q 046226           76 PETSSSYRCISSVLKKD-G--QILCIAVGNGFIYTGSDSNVIRIWKQ-PEFTECGRLKAKTS-----------MVVAMEV  140 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~h~-~--~v~~~~~~~~~l~tg~~dg~i~iwd~-~~~~~~~~~~~~~~-----------~v~~l~~  140 (434)
                      ..++...+...++.... +  ..+=+..++.+.++.+.++.|...|. ++++.+-++.....           .-..+++
T Consensus        34 ~~Nv~~L~~aW~~~~~~~~~~~~tPiv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~  113 (596)
T d1w6sa_          34 KGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAY  113 (596)
T ss_dssp             TTTGGGEEEEEEEECSCCSCCCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEE
T ss_pred             HhHhhhceEEEEEECCCCCCceeCCEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEE
Confidence            44555555555543211 1  11222335555555555677777776 57888877642110           1134555


Q ss_pred             eCC------EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE-EEEecCCCEEEEEe
Q 046226          141 SHD------RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS-IAINVSDDTLYSAS  213 (434)
Q Consensus       141 ~~~------~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~  213 (434)
                      .++      +++.++.|+.|.-.|.++++.+..........                  ...++. -.+  .+..++++.
T Consensus       114 ~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~------------------~~~~t~~P~v--~~~~vivg~  173 (596)
T d1w6sa_         114 WPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKV------------------GSTLTIAPYV--VKDKVIIGS  173 (596)
T ss_dssp             ECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGG------------------TCBCCSCCEE--ETTEEEECC
T ss_pred             ecCCCCCceEEEEEeCCCCeEeeccccCceecccccccccc------------------ccccccCCcE--ECCeEEEee
Confidence            443      68889999999999999888777664321110                  001110 001  134455554


Q ss_pred             c------CCcEEEEEcCCCeeEEEcc
Q 046226          214 L------DKTIKVWRIRDSKCIETIQ  233 (434)
Q Consensus       214 ~------dg~i~vwd~~~~~~~~~~~  233 (434)
                      .      .|.|+-+|+++|+.+.++.
T Consensus       174 ~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         174 SGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             BCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ccccccccCceEEEECCCCcEEEEee
Confidence            3      4899999999999988764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.51  E-value=0.28  Score=44.41  Aligned_cols=66  Identities=14%  Similarity=0.201  Sum_probs=40.1

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeeccCCC-----------ccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCcee
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKT-----------SMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKH  167 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-----------~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~  167 (434)
                      +..|++++.++.|.-+|.++++.+-++....           ..-..+.+..+.++.++.|+.+.-.|..+++.+..
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWH  153 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceec
Confidence            4456667777788888888888777653210           01123445556666777777776666666655433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.45  E-value=0.24  Score=43.01  Aligned_cols=208  Identities=9%  Similarity=0.007  Sum_probs=106.1

Q ss_pred             CeEEEEEecCCCEEEEE-ecC----CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCC-------------
Q 046226          196 PITSIAINVSDDTLYSA-SLD----KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDD-------------  256 (434)
Q Consensus       196 ~v~~~~~~~~~~~l~s~-~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d-------------  256 (434)
                      .+..++++|++++++.+ +.+    ..|++.|+.+++.+...- .......++|.+|+ .|+-...+             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            44567789999998844 223    379999999998764322 11223568899888 44433221             


Q ss_pred             ---CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC---CCe--EEEEEcCcccccccc----cCc
Q 046226          257 ---ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---DGY--IHYWHKGWFSAQLQY----GGA  324 (434)
Q Consensus       257 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~--i~i~d~~~~~~~~~~----~~~  324 (434)
                         ..|..|.+.  ........+.........+..+..+.++++++....   ++.  +.+.|+.........    ...
T Consensus       205 ~~~~~v~~h~lg--t~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  282 (430)
T d1qfma1         205 NLHQKLYYHVLG--TDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (430)
T ss_dssp             CCCCEEEEEETT--SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             CCcceEEEEECC--CCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEe
Confidence               256667665  222222233332223334667778889998765322   333  444454322211110    001


Q ss_pred             ccCcccceEEEEeeCCEEEEec----CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEE-Ee
Q 046226          325 LQGHTHAVMCLASVANYVISGS----ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC-TG  399 (434)
Q Consensus       325 ~~~~~~~v~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~-s~  399 (434)
                      .........-+...+..+..-+    .++.|...++...........+..+...+..-.+...         +.+|+ ..
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~---------~~~lvl~~  353 (430)
T d1qfma1         283 IDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR---------SNFLVLCY  353 (430)
T ss_dssp             ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEET---------TTEEEEEE
T ss_pred             ecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEE---------CCEEEEEE
Confidence            1112222333444555433322    3466777777665332222233345554543333333         33444 44


Q ss_pred             ecCC--eEEEEecCCCCc
Q 046226          400 SLDG--VLKMWRVTRPKS  415 (434)
Q Consensus       400 ~~Dg--~v~iw~~~~~~~  415 (434)
                      -.|+  .|+++++..++.
T Consensus       354 ~~~~~~~l~v~~~~~~~~  371 (430)
T d1qfma1         354 LHDVKNTLQLHDLATGAL  371 (430)
T ss_dssp             EETTEEEEEEEETTTCCE
T ss_pred             EcCCEeEEEEEECCCCcE
Confidence            5565  478888876654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.09  E-value=0.32  Score=41.21  Aligned_cols=158  Identities=8%  Similarity=0.004  Sum_probs=88.2

Q ss_pred             eEEEEEecCCCEEEEEecCC-----------cEEEEEcCCCeeE--EEc-ccCccCeEEEEEcCCC-eEEEEeCC-CeEE
Q 046226          197 ITSIAINVSDDTLYSASLDK-----------TIKVWRIRDSKCI--ETI-QAHSEPINALVVADDG-VLYSASDD-ATVR  260 (434)
Q Consensus       197 v~~~~~~~~~~~l~s~~~dg-----------~i~vwd~~~~~~~--~~~-~~~~~~v~~~~~~~~~-~l~s~~~d-g~i~  260 (434)
                      +...+...+++.++.|+.+.           .+.+||..+++-.  ... ..+.......++.+++ +++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            33344445788888877431           3678999876532  112 1233334456778888 66666544 5899


Q ss_pred             EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC------CeEEEEEcCccccccccc-----Cccc---
Q 046226          261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD------GYIHYWHKGWFSAQLQYG-----GALQ---  326 (434)
Q Consensus       261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~-----~~~~---  326 (434)
                      +||...    ........+.. ...-...+..+||++++.|+.+      ..+.+||.....-.....     ....   
T Consensus       102 ~yd~~~----~~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~  176 (387)
T d1k3ia3         102 LYDSSS----DSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ  176 (387)
T ss_dssp             EEEGGG----TEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred             EecCcc----Ccccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccc
Confidence            999872    22222222221 1223456777899999888753      368899976542111000     0000   


Q ss_pred             ----CcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226          327 ----GHTHAVMCLASVANYVISGSADSTSRVWAREQD  359 (434)
Q Consensus       327 ----~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~  359 (434)
                          ...........+++.++.++.++.+.+++..+.
T Consensus       177 ~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         177 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             ceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence                011112222335778888888888888887765

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.72  E-value=0.45  Score=39.64  Aligned_cols=192  Identities=11%  Similarity=0.166  Sum_probs=108.1

Q ss_pred             CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC------C--EEEEEEc--C--CeEEEeecCCCCC-ceee
Q 046226          102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH------D--RVYAAYG--D--GKIRVWRSTWDNG-VKHV  168 (434)
Q Consensus       102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~------~--~l~~~s~--d--g~i~vwd~~~~~~-~~~~  168 (434)
                      ..+++...+++-|.+||++ |+.+..+.  .+.++.|..-.      +  .+++++.  +  .+|.+|.+..... +..+
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            4466666777779999985 77777765  35566655432      2  3455553  2  3688887753321 1111


Q ss_pred             EeeeccCCCCceeEEEeccccccCcCCCeEEEEE--ecC-CC-EEEEEecCCcEEEEEcC---CC----eeEEEcccCcc
Q 046226          169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI--NVS-DD-TLYSASLDKTIKVWRIR---DS----KCIETIQAHSE  237 (434)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~s~~~dg~i~vwd~~---~~----~~~~~~~~~~~  237 (434)
                      .     .....          ...-...+..+|+  ++. +. ++++...+|.+..|.+.   .+    +.++.+. -..
T Consensus       117 ~-----~~~~p----------~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~  180 (353)
T d1h6la_         117 T-----DPNRP----------IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNS  180 (353)
T ss_dssp             S-----CSSSC----------EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSS
T ss_pred             c-----ccccc----------cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCC
Confidence            0     00000          0012234666776  554 43 45667778999888763   22    3445554 345


Q ss_pred             CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec--ccccCeEEEEEec--C--CCEEEEEcCCCeEEEE
Q 046226          238 PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT--AKYSPVKTLTLTL--D--DGLLYGGCTDGYIHYW  310 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~--~--~~~l~~~~~dg~i~i~  310 (434)
                      .+..+.+.+.. .|+.+-++.-|..++..... ......+....  .....+..|++-.  +  |-+|++.-.+++..+|
T Consensus       181 q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~-~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vy  259 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEEDEAIWKFSAEPDG-GSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIY  259 (353)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEESSTTS-CSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             ccceEEEeCCCCcEEEecCccceEEEEeccCC-CccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEE
Confidence            67788888776 88888887766555544111 12222332222  2345677777643  2  3344555567899999


Q ss_pred             EcC
Q 046226          311 HKG  313 (434)
Q Consensus       311 d~~  313 (434)
                      |..
T Consensus       260 dr~  262 (353)
T d1h6la_         260 ERQ  262 (353)
T ss_dssp             ESS
T ss_pred             ecC
Confidence            964

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.25  Score=41.75  Aligned_cols=136  Identities=4%  Similarity=0.048  Sum_probs=81.6

Q ss_pred             cEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeec
Q 046226           94 QILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATI  173 (434)
Q Consensus        94 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~  173 (434)
                      .|..++|+++.|+... ++.+..++............-..++..+.++|..++....++.+.++++..........-   
T Consensus        88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~---  163 (381)
T d1xipa_          88 DVIFVCFHGDQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQN---  163 (381)
T ss_dssp             TEEEEEEETTEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEES---
T ss_pred             CeEEEEeeCCEEEEEe-CCCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCC---
Confidence            5888999777777664 456777776664444443344567899999999989999999999999876543221100   


Q ss_pred             cCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEE-EEcCCCeeEEEcccCccCeEEEEEcCCC
Q 046226          174 PKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKV-WRIRDSKCIETIQAHSEPINALVVADDG  248 (434)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (434)
                            +..+        .-.+.+.+++|++.+..++++..++ ..+ -++.....+.........|.+|.|..+.
T Consensus       164 ------v~~~--------~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~  224 (381)
T d1xipa_         164 ------VTSF--------DVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  224 (381)
T ss_dssp             ------EEEE--------EECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             ------cceE--------EecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCc
Confidence                  0000        1235578888888787777764322 111 1111111111101133467899998776

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.32  E-value=0.64  Score=38.71  Aligned_cols=190  Identities=12%  Similarity=0.143  Sum_probs=105.9

Q ss_pred             EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec------CCCEEEEEec--C
Q 046226          144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV------SDDTLYSASL--D  215 (434)
Q Consensus       144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~s~~~--d  215 (434)
                      .++.....+-|.+||+. ++.+..+                        ..+.++.|..-.      ...-+++++.  +
T Consensus        42 lI~gTdK~~Gl~vYdL~-G~~l~~~------------------------~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~   96 (353)
T d1h6la_          42 KLITTNKKSGLAVYSLE-GKMLHSY------------------------HTGKLNNVDIRYDFPLNGKKVDIAAASNRSE   96 (353)
T ss_dssp             EEEEEETTSCCEEEETT-CCEEEEC------------------------CSSCEEEEEEEEEEEETTEEEEEEEEEECCT
T ss_pred             EEEEEcCcCCEEEEcCC-CcEEEec------------------------ccCCcCccccccccccCCcceEEEEEeCCcC
Confidence            44544556679999985 4444443                        223444444321      1223455542  2


Q ss_pred             --CcEEEEEcCC-CeeEEEcccC-------ccCeEEEEE--cCC-C--eEEEEeCCCeEEEEecccccCc-ceeEEEEEe
Q 046226          216 --KTIKVWRIRD-SKCIETIQAH-------SEPINALVV--ADD-G--VLYSASDDATVRVWRRYFYSEN-QLHTLILTL  279 (434)
Q Consensus       216 --g~i~vwd~~~-~~~~~~~~~~-------~~~v~~~~~--~~~-~--~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~  279 (434)
                        ..|.+|.+.. ...+..+...       ...+..+|+  ++. +  +++....+|.+..|.+...... .....+..+
T Consensus        97 ~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f  176 (353)
T d1h6la_          97 GKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF  176 (353)
T ss_dssp             TTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE
T ss_pred             cceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc
Confidence              2577787752 2233333321       123566666  554 4  5677788999999987533222 233344444


Q ss_pred             cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc-ccCccc--CcccceEEEEe----eCC--EEEEecCCCc
Q 046226          280 TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ-YGGALQ--GHTHAVMCLAS----VAN--YVISGSADST  350 (434)
Q Consensus       280 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~--~~~~~v~~~~~----~~~--~l~s~~~dg~  350 (434)
                      . ....+..+.++.....|+.+-++.-|..++......... ......  .....+-.++.    +++  +|++.-.+++
T Consensus       177 ~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~  255 (353)
T d1h6la_         177 K-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSS  255 (353)
T ss_dssp             E-CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             C-CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCe
Confidence            3 345788999999999999998888777776543221111 110111  12334555553    223  4555556789


Q ss_pred             EEEEeccCC
Q 046226          351 SRVWAREQD  359 (434)
Q Consensus       351 i~iwd~~~~  359 (434)
                      ..|||....
T Consensus       256 f~vydr~~~  264 (353)
T d1h6la_         256 YAIYERQGQ  264 (353)
T ss_dssp             EEEEESSTT
T ss_pred             EEEEecCCC
Confidence            999998764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.11  E-value=0.38  Score=43.62  Aligned_cols=82  Identities=11%  Similarity=0.125  Sum_probs=50.5

Q ss_pred             CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC
Q 046226          215 DKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD  294 (434)
Q Consensus       215 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  294 (434)
                      .|.|.-+|+.+++.+.+...+............+++++|+.||.++.+|..  +++...+....-..+..+   +.|..+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~--TGe~LW~~~~~~~~~~~P---~ty~~~  539 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAK--SGKELWKFQTGSGIVSPP---ITWEQD  539 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETT--TCCEEEEEECSSCCCSCC---EEEEET
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECC--CCcEeEEEECCCCccccC---EEEEEC
Confidence            478999999999998887754332222222334588889999999999987  444444433222222223   556667


Q ss_pred             CC-EEEEE
Q 046226          295 DG-LLYGG  301 (434)
Q Consensus       295 ~~-~l~~~  301 (434)
                      |+ ++++.
T Consensus       540 G~qYv~i~  547 (582)
T d1flga_         540 GEQYLGVT  547 (582)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            75 44443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.93  E-value=0.26  Score=44.64  Aligned_cols=31  Identities=3%  Similarity=0.159  Sum_probs=27.7

Q ss_pred             CCCEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226          205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  235 (434)
                      .+.++++|+.||.++.+|.++|+.+.++...
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            5788899999999999999999999988753

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.55  E-value=0.24  Score=44.73  Aligned_cols=31  Identities=3%  Similarity=0.238  Sum_probs=27.5

Q ss_pred             CCCEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226          205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAH  235 (434)
Q Consensus       205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  235 (434)
                      .+.+++.|+.||.++.+|.++|+.+.+++..
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence            5778889999999999999999999988753

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=94.48  E-value=0.89  Score=36.30  Aligned_cols=223  Identities=13%  Similarity=0.102  Sum_probs=109.1

Q ss_pred             CccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE
Q 046226          132 TSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS  211 (434)
Q Consensus       132 ~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  211 (434)
                      ...|..|+--....++-. ||.|..|-......+..-.                      .....|..|+.-  ....+.
T Consensus        25 ~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~----------------------~~~~~v~~v~~G--~~~~~a   79 (273)
T d1jtdb_          25 QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA----------------------ATQSGVDAIAAG--NYHSLA   79 (273)
T ss_dssp             SSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG----------------------GGGSCCCEEEEC--SSEEEE
T ss_pred             CCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeee----------------------cccccceEEecC--CCceee
Confidence            345888877666544444 8999999765443322110                      122345555432  222222


Q ss_pred             EecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEE
Q 046226          212 ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTL  291 (434)
Q Consensus       212 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  291 (434)
                       -.||.+..|.....-...........+..++......++  -.|+.+..|.-.......      ........|..++-
T Consensus        80 -l~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~~~~--~~dg~v~~~g~~~~~~~~------~~~~~~~~v~~~~~  150 (273)
T d1jtdb_          80 -LKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYA--LKDGKVIAWGDDSDGQTT------VPAEAQSGVTALDG  150 (273)
T ss_dssp             -EETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTEEEE--EETTEEEEEECCTTSTTS------CCGGGGSSEEEEEE
T ss_pred             -eeeeeeeccCCCcceeeccccccccceeEEeeecccccc--cccccceecccCCCCcee------eeccCCceEEEEec
Confidence             348999999764321111111122345555544333222  247889888643111100      01111223433332


Q ss_pred             ecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226          292 TLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH  371 (434)
Q Consensus       292 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h  371 (434)
                        . .+......++.++.|-........    ........|..++....+.+.-. ||.|+.|=.....+..   .....
T Consensus       151 --~-~~~~~~~~~g~~~~~G~~~~g~~~----~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql~---~~~~~  219 (273)
T d1jtdb_         151 --G-VYTALAVKNGGVIAWGDNYFGQTT----VPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTT---VPTEA  219 (273)
T ss_dssp             --C-SSEEEEEETTEEEEEECCTTSTTS----CCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTC---CCGGG
T ss_pred             --c-ceeeeeecccceeEeecccCCccc----ccccccCCccceeccceeeEEEe-cCcEEEcCCCCCCccC---CCccC
Confidence              2 222333457888888654322111    11123346777777666555444 8999999654432111   11112


Q ss_pred             ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226          372 RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT  411 (434)
Q Consensus       372 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~  411 (434)
                      ...|..|+....          ..++.  .||.|..|--.
T Consensus       220 ~~~v~~I~~G~~----------~~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         220 LSGVSAIASGEW----------YSLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             GSSCCEEEECSS----------CEEEE--ETTEEEEESTT
T ss_pred             CCCcEEEEeCcc----------eEEEE--ECCEEEEECCC
Confidence            334666655432          23333  48999999644

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.9  Score=36.31  Aligned_cols=72  Identities=8%  Similarity=0.127  Sum_probs=36.7

Q ss_pred             CCCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCC-----cEEEEeccCCCcee
Q 046226          294 DDGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADS-----TSRVWAREQDGRHT  363 (434)
Q Consensus       294 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~  363 (434)
                      ++.+++.|+.+     .....||......  ........-.....+...++++++.|+.++     .|.+||+.+. .+.
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~-~W~  271 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETETW--TFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD-TWS  271 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT-EEE
T ss_pred             eeeEEEecCccccccccceeeeeecceee--ecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC-EEE
Confidence            34555555443     3456666543321  111111111112234445677778877654     3788999875 455


Q ss_pred             eEEEe
Q 046226          364 MLAVL  368 (434)
Q Consensus       364 ~~~~~  368 (434)
                      .+..+
T Consensus       272 ~~~~~  276 (288)
T d1zgka1         272 EVTRM  276 (288)
T ss_dssp             EEEEC
T ss_pred             ECCCC
Confidence            55443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=1.2  Score=35.51  Aligned_cols=22  Identities=14%  Similarity=0.166  Sum_probs=16.0

Q ss_pred             ccEEEEeecCCe-----EEEEecCCCC
Q 046226          393 YCTICTGSLDGV-----LKMWRVTRPK  414 (434)
Q Consensus       393 ~~~l~s~~~Dg~-----v~iw~~~~~~  414 (434)
                      +++++.||.++.     |.+||+.+.+
T Consensus       243 ~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         243 GRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CEEEEEecCCCCeecceEEEEECCCCE
Confidence            678888876553     7788988764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.46  E-value=1.7  Score=35.93  Aligned_cols=104  Identities=14%  Similarity=0.139  Sum_probs=59.6

Q ss_pred             CCCeEEEEEecCCCEEEEEe--c-------------CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCC
Q 046226          194 MGPITSIAINVSDDTLYSAS--L-------------DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDD  256 (434)
Q Consensus       194 ~~~v~~~~~~~~~~~l~s~~--~-------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~d  256 (434)
                      ....+++++..++..+++-.  .             -+...+|....++. ......-...+.|+++|++  ++++-+..
T Consensus       149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~  227 (340)
T d1v04a_         149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLA  227 (340)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCC
Confidence            34578899988888777731  1             12334444433333 2222334567899999998  56666778


Q ss_pred             CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226          257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC  302 (434)
Q Consensus       257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  302 (434)
                      +.|++|++..   ........... -....-.+.+.+++..+++++
T Consensus       228 ~~i~~y~~~~---~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         228 HKIHVYEKHA---NWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             TEEEEEEECT---TSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             CeEEEEEeCC---CcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence            8999999872   11122222221 234456777776444444443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.28  E-value=2  Score=36.07  Aligned_cols=131  Identities=10%  Similarity=0.052  Sum_probs=74.3

Q ss_pred             EEEE--cCCEEEEEeCCCeEEEecCCC---------ceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCc
Q 046226           97 CIAV--GNGFIYTGSDSNVIRIWKQPE---------FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGV  165 (434)
Q Consensus        97 ~~~~--~~~~l~tg~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~  165 (434)
                      -++.  ...+++.|+.++ ++|-.++.         .......+..-..|..++|+.+.+++.. ++.+..++...-...
T Consensus        41 LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~  118 (381)
T d1xipa_          41 NLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGDQVLVST-RNALYSLDLEELSEF  118 (381)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETTEEEEEE-SSEEEEEESSSTTCE
T ss_pred             eEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCCEEEEEe-CCCEEEEEeeccccc
Confidence            3444  456777777775 45554211         0000001111235899999998766654 556777776543322


Q ss_pred             eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc-----cCccCeE
Q 046226          166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ-----AHSEPIN  240 (434)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~  240 (434)
                      ....                      .-..++..+.++|  ..++....+|.+.++++..++......     .-.+.+.
T Consensus       119 ~~~~----------------------~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~  174 (381)
T d1xipa_         119 RTVT----------------------SFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL  174 (381)
T ss_dssp             EEEE----------------------ECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred             cccc----------------------cccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence            2211                      1334567777665  456667778999999998875432221     1234577


Q ss_pred             EEEEcCCC-eEEEE
Q 046226          241 ALVVADDG-VLYSA  253 (434)
Q Consensus       241 ~~~~~~~~-~l~s~  253 (434)
                      +++|++.+ .++++
T Consensus       175 ~v~ws~kgkq~v~~  188 (381)
T d1xipa_         175 AVLLKDRSFQSFAW  188 (381)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEEEeCCcEEEEEe
Confidence            77777777 55555

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=92.88  E-value=1.8  Score=34.45  Aligned_cols=222  Identities=15%  Similarity=0.116  Sum_probs=104.3

Q ss_pred             ccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeee
Q 046226           93 GQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLAT  172 (434)
Q Consensus        93 ~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~  172 (434)
                      ..|..|+......+.-. ||.|..|-....-.+..-......|..+..-....+. -.|+.+..|...........    
T Consensus        26 ~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~a-l~dg~v~~wG~~~~gq~~~~----   99 (273)
T d1jtdb_          26 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLA-LKDGEVIAWGGNEDGQTTVP----   99 (273)
T ss_dssp             SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEE-EETTEEEEEECCTTSTTCCC----
T ss_pred             CCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceee-eeeeeeeccCCCcceeeccc----
Confidence            34777777444444334 8999999655433222212223345566554443333 24899999975432211100    


Q ss_pred             ccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEE
Q 046226          173 IPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS  252 (434)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s  252 (434)
                                        ......+..++...  ...+. -.|+.+..|.-...............|..++-.  ...+.
T Consensus       100 ------------------~~~~~~~~~i~~~~--~~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~  156 (273)
T d1jtdb_         100 ------------------AEARSGVDAIAAGA--WASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL  156 (273)
T ss_dssp             ------------------GGGGSSCCEEEEET--TEEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred             ------------------cccccceeEEeeec--ccccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceeee
Confidence                              01122344444332  22222 248889999754322211111122344444432  22233


Q ss_pred             EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce
Q 046226          253 ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV  332 (434)
Q Consensus       253 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  332 (434)
                      ...++.+..|-........      ........|..|+...  .+.+.-. ||.|+.|=...........    .....|
T Consensus       157 ~~~~g~~~~~G~~~~g~~~------~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~~Gql~~~~----~~~~~v  223 (273)
T d1jtdb_         157 AVKNGGVIAWGDNYFGQTT------VPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDNRYKQTTVPT----EALSGV  223 (273)
T ss_dssp             EEETTEEEEEECCTTSTTS------CCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTCCCG----GGGSSC
T ss_pred             eecccceeEeecccCCccc------ccccccCCccceeccc--eeeEEEe-cCcEEEcCCCCCCccCCCc----cCCCCc
Confidence            3457888888543111100      1111234566665432  3333223 7999999643222111111    112345


Q ss_pred             EEEEeeCCEEEEecCCCcEEEEecc
Q 046226          333 MCLASVANYVISGSADSTSRVWARE  357 (434)
Q Consensus       333 ~~~~~~~~~l~s~~~dg~i~iwd~~  357 (434)
                      ..++....+.+.- .||.|..|-..
T Consensus       224 ~~I~~G~~~~~~l-~~g~v~~WG~~  247 (273)
T d1jtdb_         224 SAIASGEWYSLAL-KNGKVIAWGSS  247 (273)
T ss_dssp             CEEEECSSCEEEE-ETTEEEEESTT
T ss_pred             EEEEeCcceEEEE-ECCEEEEECCC
Confidence            5665544443333 48999999543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.32  E-value=4.7  Score=34.32  Aligned_cols=246  Identities=10%  Similarity=0.051  Sum_probs=117.5

Q ss_pred             cEEEEEEeCC--EEE-EEEcC----CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC
Q 046226          134 MVVAMEVSHD--RVY-AAYGD----GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD  206 (434)
Q Consensus       134 ~v~~l~~~~~--~l~-~~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  206 (434)
                      .+..++++|+  +++ +-+.+    ..|++.|+.+++.+...-                       .......++|.+|+
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-----------------------~~~~~~~~~W~~D~  182 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-----------------------ERVKFSCMAWTHDG  182 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-----------------------EEECSCCEEECTTS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-----------------------ccccccceEEcCCC
Confidence            3455677887  333 33333    468899998775433210                       11112467899999


Q ss_pred             CEEEEEecC----------------CcEEEEEcCCCee--EEEcccC--ccCeEEEEEcCCC-eEE-EEe--CCCeEEEE
Q 046226          207 DTLYSASLD----------------KTIKVWRIRDSKC--IETIQAH--SEPINALVVADDG-VLY-SAS--DDATVRVW  262 (434)
Q Consensus       207 ~~l~s~~~d----------------g~i~vwd~~~~~~--~~~~~~~--~~~v~~~~~~~~~-~l~-s~~--~dg~i~iw  262 (434)
                      +.|+-...+                ..|..|.+.+...  +..+...  ...+..+..+.++ +++ ...  .+....+|
T Consensus       183 ~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~  262 (430)
T d1qfma1         183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW  262 (430)
T ss_dssp             SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred             CEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence            887754322                2577787766532  2233332  2346667788888 433 222  23344444


Q ss_pred             --ecccccCcc--eeEEEEEecccccCeEEEEEecCCCEEEEEc---CCCeEEEEEcCcccccccccCcccCcccce--E
Q 046226          263 --RRYFYSENQ--LHTLILTLTAKYSPVKTLTLTLDDGLLYGGC---TDGYIHYWHKGWFSAQLQYGGALQGHTHAV--M  333 (434)
Q Consensus       263 --d~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~  333 (434)
                        |+.......  ................-+. +.++.+++...   .++.|...++...... .....+..+...+  .
T Consensus       263 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~-~w~~vi~~~~~~~~~~  340 (430)
T d1qfma1         263 YCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEW  340 (430)
T ss_dssp             EEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGG-GCEEEECCCSSCEEEE
T ss_pred             EeeCCCcccccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccc-cceEEecccCcceeee
Confidence              443211110  0111111222222222222 22333333332   3467777777543221 1111222333333  3


Q ss_pred             EEEeeCCEEEEe-cCCC--cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee---cCCeEEE
Q 046226          334 CLASVANYVISG-SADS--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS---LDGVLKM  407 (434)
Q Consensus       334 ~~~~~~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~---~Dg~v~i  407 (434)
                      .+.+.+++|+.. -.++  .|+++++.++.   .......-.+.|..+...++.        ..+.++-+   .=.++.-
T Consensus       341 ~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~---~~~~~~~~~~sv~~~~~~~~~--------~~~~~~~ss~~tP~~~y~  409 (430)
T d1qfma1         341 VACVRSNFLVLCYLHDVKNTLQLHDLATGA---LLKIFPLEVGSVVGYSGQKKD--------TEIFYQFTSFLSPGIIYH  409 (430)
T ss_dssp             EEEETTTEEEEEEEETTEEEEEEEETTTCC---EEEEECCCSSEEEEEECCTTC--------SEEEEEEECSSCCCEEEE
T ss_pred             EEEEECCEEEEEEEcCCEeEEEEEECCCCc---EEEecCCCCceEeeccCCCCC--------CEEEEEEcCCCCCCeEEE
Confidence            444556766654 3554  58889988763   222233333445444333321        23333322   1267888


Q ss_pred             EecCCCCc
Q 046226          408 WRVTRPKS  415 (434)
Q Consensus       408 w~~~~~~~  415 (434)
                      +|+.+++.
T Consensus       410 ~Dl~t~~~  417 (430)
T d1qfma1         410 CDLTKEEL  417 (430)
T ss_dssp             EETTSSSC
T ss_pred             EECCCCCc
Confidence            88887753

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.63  E-value=9.9  Score=32.51  Aligned_cols=55  Identities=4%  Similarity=-0.006  Sum_probs=39.5

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE--EEcc------cCccCeEEEEEcCC
Q 046226          193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI--ETIQ------AHSEPINALVVADD  247 (434)
Q Consensus       193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~------~~~~~v~~~~~~~~  247 (434)
                      .-...++|+|.|++++|++--.+|.|++++..+++..  ..+.      .-......|+++|+
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3456789999999998877655799999998776532  2221      12356789999985

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.27  E-value=8.5  Score=31.46  Aligned_cols=163  Identities=7%  Similarity=-0.056  Sum_probs=80.9

Q ss_pred             CeEEEEEcCCC-eEEEEe------------CCCeEEEEecccccCcceeEEEEEecc----cccCeEEEEE--ecCCC-E
Q 046226          238 PINALVVADDG-VLYSAS------------DDATVRVWRRYFYSENQLHTLILTLTA----KYSPVKTLTL--TLDDG-L  297 (434)
Q Consensus       238 ~v~~~~~~~~~-~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~--~~~~~-~  297 (434)
                      ...+|...|++ .+++++            ..|.|.++|+.....  ....+.....    ..-....+.+  .+++. +
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~--~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~  113 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP--AVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  113 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSC--CEEECEEECSSSCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCC--cceEEEecCCCCCCcceeccceeEEEcCCCcEE
Confidence            34567777888 333332            148899999872221  1111111111    1112344444  34555 3


Q ss_pred             EEEE---cCCCeEEEEEcCcccccccccCcccCc-ccceEEEEee--CCEEEEec---C------------CCcEEEEec
Q 046226          298 LYGG---CTDGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASV--ANYVISGS---A------------DSTSRVWAR  356 (434)
Q Consensus       298 l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~---~------------dg~i~iwd~  356 (434)
                      |++.   ....+|.+|++................ ......+...  +.+++|-.   .            -+...+|..
T Consensus       114 L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         114 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            4443   346788999876544333333222221 1233455443  44555521   1            122344444


Q ss_pred             cCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226          357 EQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK  414 (434)
Q Consensus       357 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~  414 (434)
                      ..+.    .......-...+.++++|+.        ..++++-...+.|++|++...+
T Consensus       194 ~~~~----~~~~~~~l~~pNGI~~s~d~--------~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         194 SPND----VRVVAEGFDFANGINISPDG--------KYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             CSSC----EEEEEEEESSEEEEEECTTS--------SEEEEEEGGGTEEEEEEECTTS
T ss_pred             cCCc----eEEEcCCCCccceeEECCCC--------CEEEEEeCCCCeEEEEEeCCCc
Confidence            4331    11222223456789999983        3455666778899999997654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.71  E-value=12  Score=31.93  Aligned_cols=51  Identities=8%  Similarity=-0.051  Sum_probs=35.8

Q ss_pred             ccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeE--eecc------CCCccEEEEEEeCC
Q 046226           93 GQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTEC--GRLK------AKTSMVVAMEVSHD  143 (434)
Q Consensus        93 ~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~------~~~~~v~~l~~~~~  143 (434)
                      ..-++|+|  ++++|++--.+|.|++++..+++..  ..+.      .-......|+++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45679999  7888777656799999987775433  2221      12356789999986