Citrus Sinensis ID: 046239

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEccccccHHHHHHHHHccccccccccccccccEEEEEEEEEEccEEEEEEccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEEccccccccccccEccccHEHcccccccccHHHEccccEcccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcEEEEEEEcccHHccccccHHHHHHccccHccc
Coil and Loop (DISEMBL)
mgervidgdwkptspsigeRTVVLLGrtgngksatgnsiLGRKAFkasagssgvtiTCEMkttvlkdgqvvnvidtpglfdssagsefvGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHrlptlfgkkIFDYMIVVFTggdylednEKTLEDylghecpkplk
Flexible Loop (DISEMBL)
mgervidgdwkptspsigerTVVLlgrtgngksatgnsilgrkafkasagssgvTITCEMKttvlkdgqvvNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAvhrlptlfgkkiFDYMIVVFTGGDYLEDNEKTLedylghecpkplk
Low Complexity Region (SEG)
MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK
Disordered region (IsUnstruct)
********************TVVLLG************ILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL*********
Disordered Region (DISOPRED)
*********************VVLLGRTGNGKSATGNSILGRKAFKASA**S****TCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHE*P**LK
Disordered Region (DISEMBL)
********DWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG********
Disordered Region (DISPRO)
*****************GERTVVLLGRTGNGKSAT****LGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHEC*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.882	0.424	0.62	5e-48
O81025	463	Putative protein PHLOEM P	no	no	0.882	0.323	0.526	3e-42
Q9NUV9	329	GTPase IMAP family member	yes	no	0.888	0.458	0.397	3e-26
Q8K3K9	310	GTPase IMAP family member	no	no	0.8	0.438	0.421	3e-22
Q99JY3	219	GTPase IMAP family member	no	no	0.858	0.666	0.377	4e-21
Q8K349	305	GTPase IMAP family member	no	no	0.788	0.439	0.414	4e-19
Q8BWF2	308	GTPase IMAP family member	no	no	0.852	0.470	0.375	1e-18
Q8NHV1	300	GTPase IMAP family member	no	no	0.752	0.426	0.376	1e-18
Q96F15	307	GTPase IMAP family member	no	no	0.864	0.478	0.343	4e-18
Q8ND71	665	GTPase IMAP family member	no	no	0.882	0.225	0.347	7e-18

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  189 bits (481), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 109/150 (72%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
            +VL+GRTGNGKSATGNSI+  K FK+   SSGVT+ C     V  +G ++NVIDTPGLF
Sbjct: 44  NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLF 103

Query: 81  DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM 140
           D S  +EF+GKEIVKC+ LA GG+HAVL+V S R R SQEEE  +  L  LFG KI DY+
Sbjct: 104 DLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYL 163

Query: 141 IVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           IVVFTGGD LED+  TLEDYLG   P  LK
Sbjct: 164 IVVFTGGDVLEDDGMTLEDYLGDNMPDFLK 193

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  171 bits (432), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 110/150 (73%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
           + +VL+GRTGNGKS+TGN++LG K FK+   + GVT+ CEM    ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 80  FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY 139
            DS    + +  EI+ C+ +A+ GIHAVL+V SAR R S+EEE+ V+ L  +FG +I DY
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query: 140 MIVVFTGGDYLEDNEKTLEDYLGHECPKPL 169
            IVVFTGGD LE++++TL+DY    CP+ L
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFL 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 97/156 (62%), Gaps = 5/156 (3%)

Query: 15  PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVI 74
           P   +  +VL+G+TG GKSATGNSILGRK F +   +  +T  CE +++  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK 134
           DTPG+FD+   +    KEI++CI L   G HA+L+V     R+++EE  A  ++  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 135 KIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           +   +MI++FT  D L D    L DYL  E P+ ++
Sbjct: 144 RARSFMILIFTRKDDLGDT--NLHDYL-REAPEDIQ 176

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 4/140 (2%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VLLG+TG GKS+TGNSILGRKAF +   +  +T  CE K   + DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91

Query: 82  SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
           +        KEI +C+ L   G HA+L+V      ++ EE  A  +L ++F KK   +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMI 150

Query: 142 VVFTGGDYLEDNEKTLEDYL 161
           ++ T  D LED +  + +YL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL 168

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 17  IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDT 76
           I +  +VLLG+TG GKS+TGNSILG K F +   +  +T  CE + +   DG+ + V+DT
Sbjct: 28  IPQLRIVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDT 86

Query: 77  PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKI 136
           PG+FD+        +EI + + L   G HA+L+V     R++ EE  A  ++  +FGK+ 
Sbjct: 87  PGIFDTEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQA 145

Query: 137 FDYMIVVFTGGDYLEDNEKTLEDYLGHECPK 167
             +MI++ T  D LED +  + +YL  + PK
Sbjct: 146 RRFMILLLTRKDDLEDTD--IHEYL-EKAPK 173

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 6/140 (4%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
           ++L+G+TG+GKSATGNSILGR+AF++   +  VT T +  T    +G+ + VIDTP +F 
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQKGTREF-EGKELEVIDTPDIFS 164

Query: 82  SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
                E   K+I  C  LA  G HAVL+V     R++ E++A    L  +FG  I  Y I
Sbjct: 165 PQNQPEATAKKI--CDLLASPGPHAVLLVIQV-GRYTAEDQAVARCLQEIFGNTILAYTI 221

Query: 142 VVFTGGDYLEDNEKTLEDYL 161
           +VFT  + L   E +LE+Y+
Sbjct: 222 LVFTRKEDLA--EGSLEEYI 239

Mus musculus (taxid: 10090)

>sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 92/149 (61%), Gaps = 4/149 (2%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
           ++L+G++G GKSATGNSIL R AF++      VT T + +T    +G+ + V+DTP +F+
Sbjct: 29  ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 87

Query: 82  SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
           S A ++ + K+I  C  L   G H +L+V +   RF+ E+  AV  +  +FG  +  +MI
Sbjct: 88  SKAQNQDMDKDIGDCYLLCAPGPHVLLLV-TQLGRFTAEDAMAVRMVKEVFGVGVMRHMI 146

Query: 142 VVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           V+FT  + LE  EK+LE+++ H   + L+
Sbjct: 147 VLFTRKEDLE--EKSLEEFVTHTDNRSLR 173

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 80/130 (61%), Gaps = 2/130 (1%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
           +VL+G+TG+GKSAT N+ILG + F +   +  VT  C+ K +    G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69

Query: 82  SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
           +    +   KEI +CI  +  G HA+++V     R+++EE+  V  +  +FGK    +M+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVLLL-GRYTEEEQKTVALIKAVFGKSAMKHMV 128

Query: 142 VVFTGGDYLE 151
           ++FT  + LE
Sbjct: 129 ILFTRKEELE 138

Homo sapiens (taxid: 9606)

>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 10/157 (6%)

Query: 1   MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM 60
           M E   + +   T P++    ++L+G+TG GKSATGNSILG+  F++   +  VT TC++
Sbjct: 12  MAEGRSEDNLSATPPAL---RIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV 68

Query: 61  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE 120
           KT    +G+ V V+DTP +F+S A ++ + K I  C  L+  G H +L+V     RF+ +
Sbjct: 69  KTGTW-NGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQ 126

Query: 121 EEAAVHRLPTLFGKKIFDYMIVVFT-----GGDYLED 152
           +  A+ ++  +FG     +++++FT     GG  L+D
Sbjct: 127 DTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDD 163

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Homo sapiens (taxid: 9606)

>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 14/164 (8%)

Query: 14  SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNV 73
           S  + E  ++LLG+  +GKSATGN+ILG+  FK+      V   C+ ++ VL++ +VV V
Sbjct: 5   SCQMSELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-V 63

Query: 74  IDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG 133
           IDTP LF S A +E   + I  C+ L+   +HA+L+V  A   F++E+E     +  +FG
Sbjct: 64  IDTPDLFSSIACAEDKQRNIQHCLELSAPSLHALLLVI-AIGHFTREDEETAKGIQQVFG 122

Query: 134 KKIFDYMIVVFT---------GGDYLEDN---EKTLEDYLGHEC 165
            +   ++I+VFT           D++E N   ++ ++DY G  C
Sbjct: 123 AEARRHIIIVFTRKDDLGDDLLQDFIEKNKPLKQLVQDYEGRYC 166

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
255539412	339	aig1, putative [Ricinus communis] gi|223	1.0	0.501	0.770	1e-72
224146305	335	predicted protein [Populus trichocarpa]	1.0	0.507	0.758	1e-71
296089429	345	unnamed protein product [Vitis vinifera]	1.0	0.492	0.752	5e-71
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	1.0	0.5	0.752	6e-71
147836179	566	hypothetical protein VITISV_037325 [Viti	1.0	0.300	0.747	2e-68
224136037	259	predicted protein [Populus trichocarpa]	0.923	0.606	0.796	6e-68
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.970	0.471	0.745	1e-66
363814318	336	uncharacterized protein LOC100807910 [Gl	1.0	0.505	0.717	1e-64
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.988	0.488	0.670	8e-61
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	1.0	0.498	0.724	4e-59

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/170 (77%), Positives = 146/170 (85%)

Query: 1   MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM 60
           MG   ID DW+ TSPS G RTVVL+GRTGNGKSATGNS+LGRKAFK+ A SSGVT TCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE 120
           + TV+ DGQV+NV+DTPGLFD SA SEFVGKEIVKCI +AK GIHAVLVVFS R RFSQE
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           EEAA+  L TLFG KIFDYMIVVFTGGD LEDN++TLEDYLG ECP+PL+
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQ 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/170 (75%), Positives = 146/170 (85%)

Query: 1   MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM 60
           MG   +D DW+  SPS G RT+VL+GRTGNGKSATGNSILGRKAFK+ A SSGVT +CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE 120
           + TVL+DGQ++NVIDTPGLFD SAGSEFVG+EIVKCI +AK GIHAVLVVFS R RFSQE
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           EEAA+  L TLFG KI DYMIVVFTGGD LEDN++TLEDYLG ECP+PLK
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLK 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (694), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 147/170 (86%)

Query: 1   MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM 60
           MG   ID +W+ T+PS G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE 120
           + T+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI LAK G+HAVLVVFS R RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 121 EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           EEAA+H L TLFG KI DYMIVVFTGGD LEDN++TLEDYLG ECP+PLK
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLK 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  271 bits (694), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 147/170 (86%)

Query: 1   MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM 60
           MG   ID +W+ T+PS G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE 120
           + T+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI LAK G+HAVLVVFS R RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           EEAA+H L TLFG KI DYMIVVFTGGD LEDN++TLEDYLG ECP+PLK
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLK 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836179|emb|CAN68778.1| hypothetical protein VITISV_037325 [Vitis vinifera]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/170 (74%), Positives = 146/170 (85%)

Query: 1   MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM 60
           MG   ID +W+ T+PS G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE 120
           + T+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI LAK G+HAVLVVFS R RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           EEAA+H L TLFG KI DYMIVVFTGGD LEDN++ LEDYLG ECP+PLK
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDEXLEDYLGRECPEPLK 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 125/157 (79%), Positives = 139/157 (88%)

Query: 14  SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNV 73
           SPS G RTVVL+GRTGNGKSATGNSILG+KAFK+ A SSGVT TCE+++TVL DGQ++NV
Sbjct: 2   SPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIINV 61

Query: 74  IDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG 133
           IDTPGLFD SAGSEFVG+EIVKCI +AK GIHAVLVVFS R RFSQEEEAA+  L TLFG
Sbjct: 62  IDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFG 121

Query: 134 KKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
            KI DYMIVVFTGGD LEDN++TLEDYLG ECP+PLK
Sbjct: 122 SKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLK 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 140/165 (84%)

Query: 6   IDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL 65
           ID DW+ TS S   RTVVL+GRTGNGKSATGN+ILGRKAFK+ A SS V+ +CE+KTT L
Sbjct: 20  IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79

Query: 66  KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAV 125
            +GQ+VNVIDTPGLFD SAGSEFVGKEIVKCI LAK GIHAV+VVFS R RF++EEE A+
Sbjct: 80  NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139

Query: 126 HRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
             L TLFG KI DYMIVVFTGGD LE+N++TLEDYLG ECP+PLK
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLK 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/170 (71%), Positives = 138/170 (81%)

Query: 1   MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM 60
           MG   I  DW+ TS S   RTVVL+GRTGNGKSATGN+ILGRK FK+ A SS V+ +CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE 120
           +TT L DGQ+VNVIDTPGLFD S GSEFVGKEIVKCI LAK GIHAV+VVFS R RF++E
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 121 EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           EE A+  L TLFG KI DYMIVVFTGGD LE+N +TLEDYLG ECP+PLK
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLK 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 114/170 (67%), Positives = 137/170 (80%), Gaps = 2/170 (1%)

Query: 1   MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM 60
           MG   I  DW+  +   G RT+VL+GRTGNGKSATGNSILGRKAF++ + S+GVT TCE+
Sbjct: 6   MGGSAISDDWEFAAN--GARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63

Query: 61  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE 120
           + TVL+DGQ+++VIDTPGLFD SA  EF+G EIVKCI +AK GIHAVLVV S R RFS+E
Sbjct: 64  QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123

Query: 121 EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           E+AAV  L   FG KI DYM++VFTGGD LEDNE+TLEDYLG +CP+PLK
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLK 173

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 126/174 (72%), Positives = 143/174 (82%), Gaps = 4/174 (2%)

Query: 1   MGERVIDGDWKP--TSPSIGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTI 56
           MG   I+ DW+   TSP+ G   RTVVL+GRTGNGKSATGNSILGRKAFK+ A SSGVT+
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 57  TCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR 116
           T E++TTVL DGQ ++VIDTPG+FD SAGS+FVGKEIVKCI +AK GIHAVLVVFS R R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 117 FSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           FS EEEAA+  L TLFG KI +YMIVVFTGGD LE+NE+TLEDYLG  CP PLK
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLK 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.994	0.494	0.6	1.1e-50
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.876	0.479	0.597	7.9e-46
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.876	0.422	0.624	1.2e-44
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.947	0.479	0.565	1.5e-42
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.835	0.360	0.591	3.6e-41
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.917	0.478	0.518	4.6e-41
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.888	0.452	0.536	1.6e-40
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.870	0.319	0.527	8.7e-40
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.905	0.458	0.537	8.7e-40
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.882	0.498	0.506	3e-37

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 102/170 (60%), Positives = 132/170 (77%)

Query:     1 MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM 60
             MG  +++ DW+  S S  +RT+VL+GRTGNGKSATGNSILGRKAF++ A + GVT TCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE 120
             +  V +DG ++NV+DTPGLFD S  ++F+GKEIV+CI LA+ GIHA+L+VFS R R ++E
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVR-RLAEE 124

Query:   121 EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
             E+  +  L  LFG KI DYMIVVFTGGD LE+NE+TLE+YL   CP+ LK
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLK 174

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 89/149 (59%), Positives = 116/149 (77%)

Query:    22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
             +VL+GRTGNGKSATGNS++G+K F + A +SGVT+ C+    V KDG  +NVIDTPGLFD
Sbjct:    19 IVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVIDTPGLFD 78

Query:    82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
              S  +E++ KEIV+C+ LA+GGIHAVL+V SAR R +QEEE  +  L  LFG +I DY++
Sbjct:    79 LSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQILDYVV 138

Query:   142 VVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
             VVFTGGD LE+ ++TLEDYLG +CP  +K
Sbjct:   139 VVFTGGDVLEECKETLEDYLGRDCPTFIK 167

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 93/149 (62%), Positives = 109/149 (73%)

Query:    22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
             +VL+GRTGNGKSATGNSI+  K FK+   SSGVT+ C     V  +G ++NVIDTPGLFD
Sbjct:    45 IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104

Query:    82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
              S  +EF+GKEIVKC+ LA GG+HAVL+V S R R SQEEE  +  L  LFG KI DY+I
Sbjct:   105 LSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLI 164

Query:   142 VVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
             VVFTGGD LED+  TLEDYLG   P  LK
Sbjct:   165 VVFTGGDVLEDDGMTLEDYLGDNMPDFLK 193

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 91/161 (56%), Positives = 113/161 (70%)

Query:    10 WKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ 69
             W+  S S   + VVL+GRTGNGKSATGNSI+GRK F++   + GVT  C+    V  DG 
Sbjct:    26 WELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGP 85

Query:    70 VVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLP 129
             ++NVIDTPGLFD +  +EF+ KEIV C+ LA+ G+HAV++V S   R SQEEE A+  L 
Sbjct:    86 IINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCTLQ 145

Query:   130 TLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
              LFG KI DY+IVVFT GD LED   TLEDYL + CP+ LK
Sbjct:   146 MLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLK 186

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 84/142 (59%), Positives = 110/142 (77%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
             RT++L+GR+GNGKSATGNSILGRKAFK+   +SGVT  CE++++ L +GQ++NVIDTPGL
Sbjct:    48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107

Query:    80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY 139
             F  S  +EF  +EI++C  L K GI AVL+VFS +NR ++EE++A+  L  LFG KI DY
Sbjct:   108 FSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSALFALKILFGSKIVDY 167

Query:   140 MIVVFTGGDYLEDNEKTLEDYL 161
             MIVVFT  D LED+  T E+YL
Sbjct:   168 MIVVFTNEDSLEDDGDTFEEYL 189

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 82/158 (51%), Positives = 114/158 (72%)

Query:    15 PSIGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVN 72
             PS  E  + +VL+GRTGNGKSATGNS++G++ F++   ++GVT+ CE    V   G  +N
Sbjct:    13 PSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETCVAVTPCGTGIN 72

Query:    73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLF 132
             VIDTPGLFD S  +E++ +EI+ C+ LA+ G+HAV++V S R R SQEEEA ++ L  +F
Sbjct:    73 VIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEEEATLNTLQVIF 132

Query:   133 GKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
             G +I DY++V+FTGGD LE N  TL+DYL   CP+ LK
Sbjct:   133 GSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLK 170

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 81/151 (53%), Positives = 107/151 (70%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
             + +VL+GRTGNGKSATGNS++G+  F + A ++GVT TC+    V   G  +NVIDTPGL
Sbjct:    14 KNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSRINVIDTPGL 73

Query:    80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY 139
             FD S  +EF+ KEI+ C+ LA+GG+H V++V S R R +QEEE  +  L  LFG +I DY
Sbjct:    74 FDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQVLFGNEILDY 133

Query:   140 MIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
             +IV+FTGGD LE N +TL+DY    CP  LK
Sbjct:   134 LIVLFTGGDELEANNQTLDDYFHQGCPYFLK 164

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 78/148 (52%), Positives = 109/148 (73%)

Query:    20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
             + +VL+GRTGNGKS+TGN++LG K FK+   + GVT+ CEM    ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY 139
              DS    + +  EI+ C+ +A+ GIHAVL+V SAR R S+EEE+ V+ L  +FG +I DY
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query:   140 MIVVFTGGDYLEDNEKTLEDYLGHECPK 167
              IVVFTGGD LE++++TL+DY    CP+
Sbjct:   126 CIVVFTGGDDLEEDDQTLDDYFRAGCPE 153

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 87/162 (53%), Positives = 117/162 (72%)

Query:     6 IDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL 65
             ++ DWKP      ERT+VLLGRTGNGKSATGNSILG+  F++ A    +T  C++  + L
Sbjct:    10 VENDWKP------ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63

Query:    66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAV 125
              +G  +NVIDTPGLF +S+ ++F  +EIV+C+ LAKGGI AVL+VFS RNR ++EE++ +
Sbjct:    64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123

Query:   126 HRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPK 167
               L  LFG +I DY+IVVFT  D LE  E TL+DYL  +CP+
Sbjct:   124 RTLKILFGSQIVDYIIVVFTNEDALECGE-TLDDYL-EDCPE 163

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 80/158 (50%), Positives = 108/158 (68%)

Query:    15 PSIGE--RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVN 72
             PS  E  R +VL+G TGNGKS+TGNS++G++ F           TC+ KT    DGQ++N
Sbjct:     7 PSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVECK---TCKAKTL---DGQIIN 60

Query:    73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLF 132
             VIDTPGLFD S  ++++ KEI+ C+ L  GG+HAV++V S      +EEEAA+++L  LF
Sbjct:    61 VIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLF 120

Query:   133 GKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
             G KI DY++V+FTGGD LE   KTL+DYL   CP+ LK
Sbjct:   121 GSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLK 158

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
pfam04548	211	pfam04548, AIG1, AIG1 family	2e-73
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	4e-68
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	2e-12
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-09
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	1e-08
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	5e-08
cd00880	161	cd00880, Era_like, E	1e-07
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	4e-07
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	2e-05
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	4e-04
PRK15494	339	PRK15494, era, GTPase Era; Provisional	9e-04
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	0.001
PRK01889	356	PRK01889, PRK01889, GTPase RsgA; Reviewed	0.002
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	0.002
COG1159	298	COG1159, Era, GTPase [General function prediction	0.003

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  219 bits (559), Expect = 2e-73
 Identities = 85/151 (56%), Positives = 111/151 (73%), Gaps = 4/151 (2%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
             +VL+G+TGNGKSATGNSILGRKAF++   + GVT TC++ +    DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY 139
           FD S  ++F+ KEI++C+ LA+ G HAVL+V S   RF++EEE A+  L  LFG KI DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 140 MIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           MIVVFT  D LED+   L+DYL   CP+ LK
Sbjct: 119 MIVVFTRKDDLEDDS--LDDYLSDGCPEFLK 147

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  205 bits (523), Expect = 4e-68
 Identities = 79/151 (52%), Positives = 106/151 (70%), Gaps = 5/151 (3%)

Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
             +VL+G+TGNGKSATGN+ILGRK F++   +SGVT TC+ ++ V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY 139
           FD+S   E + KEI++C+ L+  G HA L+V     RF++EEE AV  L  LFG+K+ D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDH 118

Query: 140 MIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
            IV+FT GD LE    +LEDYL  +  + LK
Sbjct: 119 TIVLFTRGDDLEGG--SLEDYL-EDSCEALK 146

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 46/132 (34%), Positives = 62/132 (46%), Gaps = 15/132 (11%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
           T+++LG+TG GKS+T NSI G +    SA  S      E+  TV  DG  +N+IDTPGL 
Sbjct: 33  TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81  DSSAGSEFVGKEIVKCIG--LAKGGIHAVLVVFSARNRFSQEEEAAVHRL-----PTLFG 133
           +S      V ++I+  I   L K  I  VL V    +R        +           FG
Sbjct: 91  ESQDQR--VNRKILSIIKRFLKKKTIDVVLYV----DRLDMYRVDNLDVPLLRAITDSFG 144

Query: 134 KKIFDYMIVVFT 145
             I+   IVV T
Sbjct: 145 PSIWRNAIVVLT 156

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 23  VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQV-VNVIDTPGLFD 81
           V++GR G GKS+  N++LG +  + S    G T   ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSD-VPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 82  SSA-GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM 140
               G E + + +++       G   +L+V  + +R S EE+A +  L  L  + I   +
Sbjct: 60  FGGLGREELARLLLR-------GADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PI 109

Query: 141 IVVFTGGDYLEDNEKTLEDYLGHECPKP 168
           I+V    D LE+ E      L       
Sbjct: 110 ILVGNKIDLLEEREVEELLRLEELAKIL 137

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 21/137 (15%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV---LKDGQVVNVIDTP 77
            + ++G    GKS   N++LG +        +GVT T  + T +   L  G  V ++DTP
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLP-----TGVTPTTAVITVLRYGLLKG--VVLVDTP 54

Query: 78  GLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF 137
           GL  +      + +  +           AV+ V SA    ++ E   +  +    GKKIF
Sbjct: 55  GLNSTIEHHTEITESFLP-------RADAVIFVLSADQPLTESEREFLKEILKWSGKKIF 107

Query: 138 DYMIVVFTGGDYLEDNE 154
                V    D L + E
Sbjct: 108 ----FVLNKIDLLSEEE 120

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
            +++LG++G GKSAT NSI G   F   A   G T   E++  V   G  + VIDTPGL 
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLK 177

Query: 81  DS 82
            S
Sbjct: 178 SS 179

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 23  VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDS 82
            + GR   GKS+  N++LG+     S    G T     K   L     V +IDTPGL + 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSP-IPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 83  SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIV 142
                   +E  +           VL+V  +      EEEA +  L    GK +    ++
Sbjct: 60  GGLGRERVEEARQVA----DRADLVLLVVDSDLTPV-EEEAKLGLLRER-GKPV----LL 109

Query: 143 VFTGGDYLEDNEK 155
           V    D + ++E+
Sbjct: 110 VLNKIDLVPESEE 122

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 21/131 (16%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
            V L+GR   GKS   N++ G K    S    G T   +    VL  G+ + ++DTPGL 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSD-YPGTTR--DPILGVLGLGRQIILVDTPGLI 57

Query: 81  DSSAGSEFVG------KEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK 134
           + ++  + V       + I +           +L+V  A    ++++E  +  L  L  K
Sbjct: 58  EGASEGKGVEGFNRFLEAIREA--------DLILLVVDASEGLTEDDEEILEELEKLPKK 109

Query: 135 KIFDYMIVVFT 145
                +I+V  
Sbjct: 110 P----IILVLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
          T++++G+ G GKS+T NSI+G +    SA  S G+      +T   + G  +N+IDTPGL
Sbjct: 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT---RAGFTLNIIDTPGL 96

Query: 80 FD 81
           +
Sbjct: 97 IE 98

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
           V+L+G TG GKS+  N++   +  + S    G  IT  ++ +   DG+ + + DTPGL D
Sbjct: 42  VLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY--DGENLVLWDTPGLGD 99

Query: 82  SSAG 85
               
Sbjct: 100 GKDK 103

Length = 296

>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional

 Score = 38.5 bits (89), Expect = 9e-04
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV--LKDGQVVNVIDTPG 78
           +V ++GR  +GKS   N I+G    K S  +  V  T  + T +  LKD QV+ + DTPG
Sbjct: 54  SVCIIGRPNSGKSTLLNRIIGE---KLSIVTPKVQTTRSIITGIITLKDTQVI-LYDTPG 109

Query: 79  LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF 137
           +F+     E   K +V+C   +      VL++  +   F       + +L +L    IF
Sbjct: 110 IFEPKGSLE---KAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIF 165

Length = 339

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTP 77
           + TV L+G    GK+   N++ G  A +      GVT+  E K   LK  G  + ++D P
Sbjct: 3   KLTVALVGNPNVGKTTLFNALTG--ANQKVGNWPGVTV--EKKEGKLKYKGHEIEIVDLP 58

Query: 78  GLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN 115
           G +  +A SE    E V    L +G    ++ V  A N
Sbjct: 59  GTYSLTAYSE---DEKVARDFLLEGKPDLIVNVVDATN 93

Length = 653

>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 15/79 (18%)

Query: 18  GERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSG--VTITCEMKTTVLKDGQVV 71
           G +TV LLG +G GKS   N++LG +  K  A     S G   T   E+    L  G + 
Sbjct: 194 GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELH--PLPSGGL- 250

Query: 72  NVIDTPG-----LFDSSAG 85
            +IDTPG     L+D+  G
Sbjct: 251 -LIDTPGMRELQLWDAEDG 268

Length = 356

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQ--VVNVID 75
          E  +V++G    GKS   N +LG K             T    TTV++ DG+    N++D
Sbjct: 1  EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKP---GTTRNYVTTVIEEDGKTYKFNLLD 57

Query: 76 TPG 78
          T G
Sbjct: 58 TAG 60

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 23/125 (18%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL---------KDGQVVN 72
           V ++GR   GKS   N+++G+K          ++I      T            + Q++ 
Sbjct: 9   VAIIGRPNVGKSTLLNALVGQK----------ISIVSPKPQTTRNRIRGIVTTDNAQII- 57

Query: 73  VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLF 132
            +DTPG+          G+ + K    A   +  +L V  A   +   +E  + +L    
Sbjct: 58  FVDTPGIHKPKHAL---GELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTK 114

Query: 133 GKKIF 137
              I 
Sbjct: 115 TPVIL 119

Length = 298

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.95
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.95
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.9
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.87
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.87
COG1159	298	Era GTPase [General function prediction only]	99.87
COG1160	444	Predicted GTPases [General function prediction onl	99.85
COG0218	200	Predicted GTPase [General function prediction only	99.84
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.83
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.8
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.8
PRK00089	292	era GTPase Era; Reviewed	99.79
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.78
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.77
PRK12298	390	obgE GTPase CgtA; Reviewed	99.76
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.76
PRK15494	339	era GTPase Era; Provisional	99.76
COG1160	444	Predicted GTPases [General function prediction onl	99.76
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.76
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.75
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.75
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.75
PRK12299	335	obgE GTPase CgtA; Reviewed	99.74
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.74
PRK03003	472	GTP-binding protein Der; Reviewed	99.74
PRK00093	435	GTP-binding protein Der; Reviewed	99.74
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.73
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.73
PRK00093	435	GTP-binding protein Der; Reviewed	99.73
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.72
PRK12297	424	obgE GTPase CgtA; Reviewed	99.72
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.71
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.71
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.71
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.71
COG1084	346	Predicted GTPase [General function prediction only	99.71
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.71
COG0486	454	ThdF Predicted GTPase [General function prediction	99.71
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.71
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.7
PRK12296	500	obgE GTPase CgtA; Reviewed	99.7
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.7
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.7
cd00881	189	GTP_translation_factor GTP translation factor fami	99.7
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.7
COG3596	296	Predicted GTPase [General function prediction only	99.7
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.7
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.7
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.7
PRK03003	472	GTP-binding protein Der; Reviewed	99.7
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.69
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.69
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.69
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.69
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.69
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.69
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.69
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.69
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.68
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.68
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.68
CHL00071	409	tufA elongation factor Tu	99.67
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.67
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.67
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.67
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.67
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.67
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.67
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.67
PRK11058	426	GTPase HflX; Provisional	99.67
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.67
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.66
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.66
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.66
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.66
PRK04213	201	GTP-binding protein; Provisional	99.66
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.66
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.66
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.66
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.66
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.65
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.65
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.65
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.65
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.65
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.65
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.65
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.65
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.65
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.65
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.65
PLN00223	181	ADP-ribosylation factor; Provisional	99.65
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.65
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.65
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.65
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.65
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.65
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.64
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.64
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.64
PLN03118	211	Rab family protein; Provisional	99.64
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.64
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.64
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.64
PTZ00133	182	ADP-ribosylation factor; Provisional	99.64
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.64
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.64
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.64
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.64
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.64
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.64
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.64
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.64
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.63
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.63
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.63
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.63
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.63
PLN03110	216	Rab GTPase; Provisional	99.63
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.63
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.63
PRK12736	394	elongation factor Tu; Reviewed	99.63
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.63
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.63
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.63
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.62
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.62
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.62
PRK12735	396	elongation factor Tu; Reviewed	99.62
PLN03127	447	Elongation factor Tu; Provisional	99.62
PRK05306	787	infB translation initiation factor IF-2; Validated	99.62
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.62
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.61
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.61
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.61
PRK12317	425	elongation factor 1-alpha; Reviewed	99.61
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.61
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.61
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.61
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.61
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.61
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.6
COG2262	411	HflX GTPases [General function prediction only]	99.6
PLN03108	210	Rab family protein; Provisional	99.6
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.6
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.6
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.6
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.59
CHL00189	742	infB translation initiation factor 2; Provisional	99.59
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.59
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.59
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.59
PRK00049	396	elongation factor Tu; Reviewed	99.59
PLN03126	478	Elongation factor Tu; Provisional	99.59
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.58
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.58
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.58
PTZ00369	189	Ras-like protein; Provisional	99.58
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.58
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.58
COG2229	187	Predicted GTPase [General function prediction only	99.58
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.58
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.58
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.58
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.58
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.58
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.58
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.57
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.57
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.57
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.57
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.57
COG0536	369	Obg Predicted GTPase [General function prediction	99.57
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.56
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.56
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.56
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.56
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.56
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.56
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.56
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.56
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.56
PRK00007	693	elongation factor G; Reviewed	99.56
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.56
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.56
PRK12739	691	elongation factor G; Reviewed	99.55
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.55
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.55
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.55
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.55
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.55
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.55
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.55
PLN00023	334	GTP-binding protein; Provisional	99.55
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.54
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.54
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.54
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.54
PRK10218	607	GTP-binding protein; Provisional	99.54
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.54
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.54
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.53
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.53
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.53
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.53
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.53
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.53
PTZ00141	446	elongation factor 1- alpha; Provisional	99.53
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.53
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.53
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.52
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.52
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.52
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.52
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.52
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.52
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.51
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.51
PRK13351	687	elongation factor G; Reviewed	99.51
PRK04004	586	translation initiation factor IF-2; Validated	99.5
PRK09866	741	hypothetical protein; Provisional	99.5
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.5
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.49
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.49
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.48
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.48
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.48
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.48
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.47
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.47
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.46
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.46
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.46
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.45
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.45
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.44
PRK05433	600	GTP-binding protein LepA; Provisional	99.43
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.43
PTZ00416	836	elongation factor 2; Provisional	99.43
COG1100	219	GTPase SAR1 and related small G proteins [General	99.43
COG1163	365	DRG Predicted GTPase [General function prediction	99.42
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.41
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.4
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.39
PLN00043	447	elongation factor 1-alpha; Provisional	99.37
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.37
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.35
KOG0090	238	consensus Signal recognition particle receptor, be	99.34
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.32
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.31
PTZ00258	390	GTP-binding protein; Provisional	99.31
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.31
PRK12740	668	elongation factor G; Reviewed	99.3
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.29
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.29
PRK07560	731	elongation factor EF-2; Reviewed	99.28
PRK09601	364	GTP-binding protein YchF; Reviewed	99.27
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.27
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.25
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.25
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.24
KOG0394	210	consensus Ras-related GTPase [General function pre	99.24
KOG1145	683	consensus Mitochondrial translation initiation fac	99.24
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.24
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.24
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.23
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.23
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.2
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	99.2
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.19
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.18
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.17
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.15
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.15
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.15
PRK09602	396	translation-associated GTPase; Reviewed	99.15
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.15
KOG0395	196	consensus Ras-related GTPase [General function pre	99.14
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.14
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.13
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.13
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.13
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.13
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.12
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.12
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.12
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.12
KOG2486	320	consensus Predicted GTPase [General function predi	99.11
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.11
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.11
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.11
COG4988	559	CydD ABC-type transport system involved in cytochr	99.1
cd03246	173	ABCC_Protease_Secretion This family represents the	99.1
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.09
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.09
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.08
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.05
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.05
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.04
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.04
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.04
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.04
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.04
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.04
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.04
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.04
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.04
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.04
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.04
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.03
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.03
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.03
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.03
COG0488	530	Uup ATPase components of ABC transporters with dup	99.03
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.02
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.01
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.01
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.01
PRK13768	253	GTPase; Provisional	99.01
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.01
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.01
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.0
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.99
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.99
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.99
PRK12288	347	GTPase RsgA; Reviewed	98.99
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.98
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.98
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.98
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.98
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.98
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.97
COG1162	301	Predicted GTPases [General function prediction onl	98.97
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.97
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.97
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.97
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.97
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.97
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.97
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.96
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.96
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.96
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.96
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.96
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.96
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.96
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.96
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.96
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.95
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.95
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.95
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.95
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.95
PRK10908	222	cell division protein FtsE; Provisional	98.95
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.95
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.95
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.95
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.94
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.94
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.94
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.94
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.94
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.94
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.94
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.94
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.93
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.93
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.93
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.93
PRK00098	298	GTPase RsgA; Reviewed	98.93
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.93
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.93
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.93
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	98.93
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.93
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.92
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.92
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.92
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.92
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.92
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.92
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.92
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.92
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.92
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.91
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.91
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.91
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.91
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.91
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.91
COG4987	573	CydC ABC-type transport system involved in cytochr	98.91
PRK12289	352	GTPase RsgA; Reviewed	98.91
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.91
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.91
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.91
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.91
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.91
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.91
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.9
KOG0410	410	consensus Predicted GTP binding protein [General f	98.9
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.9
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.9
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.9
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.9
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.89
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.89
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.89
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.89
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.89
PRK10416	318	signal recognition particle-docking protein FtsY;	98.89
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.89
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.89
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.89
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.88
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.88
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.88
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.88
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.88
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.88
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.88
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.88
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.88
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.88
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.88
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.87
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.87
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.87
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.87
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.87
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.87
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.87
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.87
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.86
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.86
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.86
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.86
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	98.86
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.86
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.85
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.85
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.85
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.85
COG1161	322	Predicted GTPases [General function prediction onl	98.85
KOG4252	246	consensus GTP-binding protein [Signal transduction	98.85
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.85
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.85
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.85
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.85
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	98.85
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.84
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.84
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.84
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.84
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.84
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.84
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.84
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.84
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.83
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.83
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.83
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.83
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.83
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.83
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.83
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	98.83
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.83
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.83
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.82
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.82
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.82
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.82
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.82
COG0488	530	Uup ATPase components of ABC transporters with dup	98.82
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.82
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.82
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.82
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.82
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.81
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.81
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.81
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.81
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.81
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.81
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.8
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.8
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.8
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.8
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.8
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.8
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.8
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.8
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.8
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.79
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.79

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.95  E-value=5.4e-27  Score=164.01  Aligned_cols=141  Identities=53%  Similarity=0.844  Sum_probs=120.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|++|+|||||+|+|+|......+....+.|..+......+ .+..+.++||||+.++.........++..++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            4799999999999999999999887666555667787777777777 788999999999998766556666777777777


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhhc
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHE  164 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~  164 (170)
                      ...++|++++|+++.+ ++..+...++.+.+.+++..++++++|+||+|.+..  .++++|++..
T Consensus        80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~~  141 (196)
T cd01852          80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLENS  141 (196)
T ss_pred             cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHhc
Confidence            7789999999999985 999999999999999999888999999999999987  4788888774

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.95  E-value=9.1e-28  Score=169.58  Aligned_cols=141  Identities=45%  Similarity=0.774  Sum_probs=115.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+|+|++|+||||++|+|+|...+..+....+.|..+......+ .+..+.++||||+.+.....+....++..++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            4799999999999999999999998777666667777777777766 899999999999998776667777888888877


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhhc
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHE  164 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~  164 (170)
                      ..+++|++|||++.. +++..+...++.+.+.|+..++++++||+|++|.+.+.  .+++|+++.
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~  141 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKE  141 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHH
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhcc
Confidence            889999999999998 99999999999999999999999999999999999884  688888743

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.90  E-value=7.9e-23  Score=149.23  Aligned_cols=145  Identities=25%  Similarity=0.382  Sum_probs=105.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ..+..+|+++|.+|+||||++|+|+|......... .+.+.......... .+..+.++||||+.+...    ...+...
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~----~~e~~~~  108 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGY----INDQAVN  108 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEE-CCeEEEEEECCCCCchHH----HHHHHHH
Confidence            34668999999999999999999999875333211 12222222222333 688999999999997532    2222222


Q ss_pred             HHHh--ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhhcCCC
Q 046239           96 CIGL--AKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPK  167 (170)
Q Consensus        96 ~~~~--~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~~~~  167 (170)
                      .++.  ...++|++|||..++ .+++..+...++.+.+.||...++++|+|+||+|...+++.++++|+.+ +..
T Consensus       109 ~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~  182 (313)
T TIGR00991       109 IIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSE  182 (313)
T ss_pred             HHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHH
Confidence            2221  234799999997764 3788889999999999999999999999999999886666789999987 443

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.87  E-value=5.3e-21  Score=150.24  Aligned_cols=147  Identities=23%  Similarity=0.286  Sum_probs=107.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...+|+|+|++|+||||++|+|+|...+....... .|+........+ .+..+.|+||||+.++.... ....++...+
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~-~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~I  193 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM-GTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSSV  193 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCC-CceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHHH
Confidence            34689999999999999999999987655533333 344443333334 67889999999999864432 2333444444


Q ss_pred             Hhc--cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh-----hhHHHHhhhcCCCC
Q 046239           98 GLA--KGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE-----KTLEDYLGHECPKP  168 (170)
Q Consensus        98 ~~~--~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-----~~~~~~~~~~~~~~  168 (170)
                      ..+  ..++|++|||+.++ ...+.++...++.+.+.||..+|+++|||+||+|.+.+++     .++++|+.+ ++..
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~  271 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHI  271 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHH
Confidence            332  24689999999875 2333467789999999999999999999999999997432     589999977 5543

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.87  E-value=1.3e-20  Score=135.60  Aligned_cols=137  Identities=30%  Similarity=0.339  Sum_probs=100.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ......+|+++|++|+|||||+|+|+|......+. ..+.|.........+ .+..+.++||||+.+..... ....+..
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~-~~~~~~~  103 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQ-RVNRKIL  103 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhH-HHHHHHH
Confidence            45566899999999999999999999987544432 334555555555555 67889999999999753211 1222233


Q ss_pred             HHHHhc--cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239           95 KCIGLA--KGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE  154 (170)
Q Consensus        95 ~~~~~~--~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (170)
                      ..+..+  ...+|++++|..++ .+++..+..+++.+.+.++...+.++++|+||+|...+++
T Consensus       104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence            322222  24678999998775 4678888999999999999888999999999999875543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1159 Era GTPase [General function prediction only]

Probab=99.87  E-value=1.3e-20  Score=135.26  Aligned_cols=125  Identities=22%  Similarity=0.296  Sum_probs=103.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ...++++|+|++|||||+|.|+|....-.  ++.+.|+...+..+.......++++||||++.+   .+..++.+.+.+.
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~KisIv--S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~   80 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAAR   80 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCceEee--cCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHH
Confidence            45789999999999999999999887543  444556555555555446789999999999976   4667778888888


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ..+..+|+++||+++++.+...+...++.+...     ..|+++++||.|.+.++
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~  130 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPK  130 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence            899999999999999988999998888888872     24999999999999884

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=4.2e-20  Score=139.32  Aligned_cols=124  Identities=24%  Similarity=0.245  Sum_probs=105.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +.|+++|++++|||||+|.|+|...+-. ...++.|....+....| .+..+.++||+|+.+.  .++....++..+...
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~--~~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG--DEDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcC--CchHHHHHHHHHHHH
Confidence            6899999999999999999999887655 34568888888888888 6778999999999853  234577788888888


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++|||+|...++++.|..+.++|+..     .+|+++|+||+|..+.
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~  127 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKA  127 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchh
Confidence            88999999999999989999999999998843     2599999999998744

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=5.2e-19  Score=120.75  Aligned_cols=129  Identities=21%  Similarity=0.235  Sum_probs=99.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc---hHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS---EFVGK   91 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~---~~~~~   91 (170)
                      +.....-|+++|+|++|||||||+|++.........++|.|.....+...    ..++++|.||++......   +.+..
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHH
Confidence            34466789999999999999999999977544445677888877766653    348999999999755443   33444


Q ss_pred             HHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .+..++... ....++++++|+.+.+...|.++++++.+.-     .|+++++||+|++...
T Consensus        96 ~i~~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~~~  151 (200)
T COG0218          96 LIEEYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADKLKKS  151 (200)
T ss_pred             HHHHHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCChh
Confidence            445555433 3478899999999899999999999998862     4999999999999874

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.83  E-value=3e-19  Score=114.82  Aligned_cols=116  Identities=25%  Similarity=0.335  Sum_probs=78.4

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|++|+|||||+|+|++......+.. .+.|.......+.+ .+..+.++||||+.+...... ....+....+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~-~~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDN-DGKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHH-HHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhH-HHHHHHHHHHHH
Confidence            589999999999999999998653333332 34555454444555 678889999999987432222 112233344444


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEc
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTG  146 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk  146 (170)
                       ..+|++++|+++.+..+..+..+++++.      ...|+++|+||
T Consensus        78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence             8889999999987544445566666663      12599999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.80  E-value=1.4e-18  Score=115.98  Aligned_cols=119  Identities=24%  Similarity=0.293  Sum_probs=81.8

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~~~   98 (170)
                      +|+++|.+++|||||||+|+|.....  ...++.|.......+.+ .+..+.++|+||.++.....  +....+++    
T Consensus         2 ~ialvG~PNvGKStLfN~Ltg~~~~v--~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l----   74 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALTGAKQKV--GNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEERVARDYL----   74 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEE--EESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHHHHHHHHH----
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcee--cCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHHHHHHHHH----
Confidence            68999999999999999999998543  23467777777777777 67999999999998754332  22222221    


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE  154 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (170)
                       ...++|++++|+|+. .+ ..+..+..++.+.   +  .|+++++||+|.....+
T Consensus        75 -~~~~~D~ii~VvDa~-~l-~r~l~l~~ql~e~---g--~P~vvvlN~~D~a~~~g  122 (156)
T PF02421_consen   75 -LSEKPDLIIVVVDAT-NL-ERNLYLTLQLLEL---G--IPVVVVLNKMDEAERKG  122 (156)
T ss_dssp             -HHTSSSEEEEEEEGG-GH-HHHHHHHHHHHHT---T--SSEEEEEETHHHHHHTT
T ss_pred             -hhcCCCEEEEECCCC-CH-HHHHHHHHHHHHc---C--CCEEEEEeCHHHHHHcC
Confidence             247899999999997 32 2333444555543   2  59999999999875543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00436 era GTP-binding protein Era

Probab=99.80  E-value=4.7e-18  Score=124.32  Aligned_cols=121  Identities=21%  Similarity=0.253  Sum_probs=79.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|++|+|||||+|+|+|......  ...+.|+...........+..+.++||||+.+..   ......+.+.+...
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~v--s~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISIT--SPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeec--CCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence            689999999999999999999765322  2222233223333322245678999999998642   22333344445556


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+|++++|+|+++..+.. ..+++.+...     ..|+++|+||+|+...
T Consensus        77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~-----~~p~ilV~NK~Dl~~~  122 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL-----KRPVVLTRNKLDNKFK  122 (270)
T ss_pred             HhhCCEEEEEEECCCCCchH-HHHHHHHHhc-----CCCEEEEEECeeCCCH
Confidence            67889999999998554433 3444444432     2599999999998744

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK00089 era GTPase Era; Reviewed

Probab=99.79  E-value=1e-17  Score=123.86  Aligned_cols=124  Identities=22%  Similarity=0.321  Sum_probs=85.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ...|+++|++|+|||||+|+|+|......  ...+.|+...........+..+.++||||+.+..   ......+...+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~v--s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~   79 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW   79 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeec--CCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence            46799999999999999999999765332  2222333333322222144689999999998643   223344555555


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|+.+.++..+..+++.+...     ..|+++|+||+|+...
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~~  128 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVKD  128 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCCC
Confidence            567889999999999866776666666655532     2499999999999843

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.78  E-value=3.9e-17  Score=112.60  Aligned_cols=128  Identities=19%  Similarity=0.250  Sum_probs=83.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      +.....+|+++|++|+|||||+|+|++...........+.|.....+..    ...+.++||||+........ ...++.
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpG~~~~~~~~~-~~~~~~   88 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV----NDGFRLVDLPGYGYAKVSKE-EKEKWQ   88 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe----CCcEEEEeCCCCccccCChh-HHHHHH
Confidence            3466789999999999999999999987421111223344444443332    24789999999875322211 111222


Q ss_pred             HHHH---hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIG---LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~---~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....   ......+++++|+++..+++..+...++.+...     ..|+++++||+|....
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~  144 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK  144 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH
Confidence            1111   122356899999999878888887766666542     2589999999998754

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01894 EngA1 EngA1 subfamily

Probab=99.77  E-value=1.6e-17  Score=111.66  Aligned_cols=120  Identities=24%  Similarity=0.286  Sum_probs=83.6

Q ss_pred             EEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccC
Q 046239           23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKG  102 (170)
Q Consensus        23 ~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  102 (170)
                      +++|.+|+|||||+|+|++...... ....+.|.........+ .+..+.++||||+.+...   .....+.........
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIV-EDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEee-cCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            4789999999999999998753222 12334444444445554 567899999999987532   233334444444556


Q ss_pred             CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          103 GIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       103 ~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ++|++++|+++.+..+..+..+.+++...     ..|+++|+||+|+...
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~  120 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKE  120 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCCh
Confidence            78999999999766666666666666543     1599999999998876

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.76  E-value=4.7e-17  Score=124.03  Aligned_cols=126  Identities=21%  Similarity=0.214  Sum_probs=81.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      .|+|+|.+++|||||+|+|++... .. ...+..|.......+.+.....++++||||+.+..........++++.    
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~-~v-s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~----  234 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP-KV-ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH----  234 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc-cc-cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence            599999999999999999998664 11 223344544455555553345799999999987543333344555543    


Q ss_pred             cCCccEEEEEEeCCC---C-CCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARN---R-FSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+++++++|+|+..   . .......+++.+.........+|.++|+||+|+...
T Consensus       235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~  290 (390)
T PRK12298        235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE  290 (390)
T ss_pred             HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence            456699999999861   1 112224445555543221223699999999998754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.76  E-value=6.2e-17  Score=108.69  Aligned_cols=122  Identities=26%  Similarity=0.286  Sum_probs=81.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +.+|+++|++|+|||||++++++........ ..+.+.........+ .+..+.++||||+.+......   ........
T Consensus         1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~   75 (157)
T cd04164           1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIE---KIGIERAR   75 (157)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHH---HHHHHHHH
Confidence            3589999999999999999999876432221 223333333334444 567899999999987543211   11111222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++|++++|+|+.+..+..+...+..       ....|+++|+||+|+...
T Consensus        76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~  122 (157)
T cd04164          76 EAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPD  122 (157)
T ss_pred             HHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCc
Confidence            34568899999999986666666555443       112599999999998865

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK15494 era GTPase Era; Provisional

Probab=99.76  E-value=6.5e-17  Score=121.59  Aligned_cols=124  Identities=23%  Similarity=0.314  Sum_probs=84.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|.+|+|||||+|+|++....... .....|.......+.+ .+..+.++||||+.+...   .....+.+.+.
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~  126 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRCAW  126 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHHHH
Confidence            348999999999999999999987653221 1222333322333444 567899999999975321   23334444444


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+..+|++++|+|..+.++..+..+++.+.+.   .  .|.++|+||+|+...
T Consensus       127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~---~--~p~IlViNKiDl~~~  175 (339)
T PRK15494        127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSL---N--IVPIFLLNKIDIESK  175 (339)
T ss_pred             HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc---C--CCEEEEEEhhcCccc
Confidence            456788999999998777777766666666543   1  367889999998654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.76  E-value=6.3e-18  Score=127.68  Aligned_cols=134  Identities=25%  Similarity=0.268  Sum_probs=97.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...+|+++|++++|||||+|+|+|....-... ..+.|...-...+++ +++.+.++||.|+-.-..-.+..  +..+..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~--E~~Sv~  252 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESV--EKYSVA  252 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEE-CCeEEEEEECCCCCcccccccce--EEEeeh
Confidence            46899999999999999999999988755432 345666655566666 79999999999997532211111  111111


Q ss_pred             --HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHH
Q 046239           98 --GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDY  160 (170)
Q Consensus        98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~  160 (170)
                        ......++++++|+|+.++++.+|.+.+..+.+..     +++++|+||||+++.+....+++
T Consensus       253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g-----~~~vIvvNKWDl~~~~~~~~~~~  312 (444)
T COG1160         253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG-----RGIVIVVNKWDLVEEDEATMEEF  312 (444)
T ss_pred             hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcC-----CCeEEEEEccccCCchhhHHHHH
Confidence              12345669999999999999999999988888753     58999999999998743344443

>cd01895 EngA2 EngA2 subfamily

Probab=99.76  E-value=8.7e-17  Score=109.58  Aligned_cols=127  Identities=22%  Similarity=0.224  Sum_probs=79.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|.+|+|||||+|+|++........ ..+.+.......... .+..+.++||||+.+.................
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            4689999999999999999999875322211 122222222223333 56678999999998643222111111111112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|+.+..+.....++..+...   .  .|+++++||+|+...
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~  128 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE---G--KALVIVVNKWDLVEK  128 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc---C--CCEEEEEeccccCCc
Confidence            244678999999999877666655554443332   2  599999999998766

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01898 Obg Obg subfamily

Probab=99.76  E-value=4.3e-17  Score=111.16  Aligned_cols=125  Identities=21%  Similarity=0.208  Sum_probs=75.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc-eEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ-VVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .|+++|++|+|||||+|+|++...... . .++.|.........+ .+. .+.++||||+.+...........+..    
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~-~-~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~----   74 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIA-D-YPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR----   74 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcccc-C-CCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence            589999999999999999998653111 1 112233333333344 344 89999999986432111112222222    


Q ss_pred             ccCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNR-FSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++++|+|+.+. -+... ..+.+.+.+........|+++|+||+|+...
T Consensus        75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  129 (170)
T cd01898          75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE  129 (170)
T ss_pred             HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence            22357999999999744 22222 3444445443222223689999999998765

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.75  E-value=4.6e-17  Score=126.30  Aligned_cols=122  Identities=23%  Similarity=0.278  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|++|+|||||+|.|++...... ...++.|.........+ .+..+.++||||+...   .......+......+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence            489999999999999999998764322 22345665556666666 7788999999998642   122344555556666


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+|++++|+|+.++++..+..+.+++++.     ..|+++|+||+|....
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~  122 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKE  122 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCcc
Confidence            7788999999999888888888888888763     2599999999998765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04163 Era Era subfamily

Probab=99.75  E-value=9.8e-17  Score=108.48  Aligned_cols=123  Identities=24%  Similarity=0.275  Sum_probs=80.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|++|+|||||+|.+++.......... ..+.......... .+..+.++||||+..+....   ...+.....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~---~~~~~~~~~   77 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKL---GERMVKAAW   77 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEc-CCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence            468999999999999999999987643322211 2222222222222 45678999999998643211   122333334


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .....+|++++|+++.+..+.....+.+.+...   .  .|+++|+||+|+..
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~  125 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS---K--TPVILVLNKIDLVK  125 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh---C--CCEEEEEEchhccc
Confidence            456778999999999866565565555555543   1  48999999999873

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.75  E-value=1.1e-16  Score=108.87  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=78.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      +.|+++|.+|+|||||+|+|++......  ...+.|...........  .+..+.++||||...+           ....
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~   67 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMR   67 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHH
Confidence            3689999999999999999997654322  22234444443444431  3678999999998641           2222


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ......+|++++|+++++.........+..+...     ..|+++|+||+|+....
T Consensus        68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ivv~NK~Dl~~~~  118 (168)
T cd01887          68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAA-----NVPFIVALNKIDKPNAN  118 (168)
T ss_pred             HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc-----CCCEEEEEEceeccccc
Confidence            3345678999999999865555555555554431     25899999999987553

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=3.6e-16  Score=117.09  Aligned_cols=126  Identities=19%  Similarity=0.196  Sum_probs=82.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      .|+|+|.++||||||+|+|++.... . ...+..|.......+.+.....+.++|+||+.+..........++++.+   
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~~-v-a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi---  234 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKPK-I-ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI---  234 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCCc-c-CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh---
Confidence            4899999999999999999986532 1 2223345555555555534568999999999864433333444554433   


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       .+++++++|+|+++..+.++ ..+.+.+.........+|+++|+||+|+...
T Consensus       235 -e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~  286 (335)
T PRK12299        235 -ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE  286 (335)
T ss_pred             -hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence             45699999999974333333 3344445443221124699999999998755

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.74  E-value=1.6e-16  Score=108.13  Aligned_cols=124  Identities=24%  Similarity=0.193  Sum_probs=76.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch-HHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-FVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~~   98 (170)
                      ++|+++|.+|+|||||+|++++......  .....|.........+ .+..+.++||||+.+...... .......   .
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~---~   74 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAI---T   74 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHH---H
Confidence            4789999999999999999998764211  1122344344444444 567899999999964322111 1111111   1


Q ss_pred             hccCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFS---QEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......|++++|+|+.+..+   .....+++.+.+.+.   ..|+++|+||+|....
T Consensus        75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~  128 (168)
T cd01897          75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF  128 (168)
T ss_pred             HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch
Confidence            11223588999999974432   222345555554332   2599999999998765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.74  E-value=1.7e-16  Score=124.22  Aligned_cols=125  Identities=24%  Similarity=0.203  Sum_probs=91.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..++|+|+|.+|+|||||+|+|++...... ...++.|.........+ .+..+.++||||+...   .......+...+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~  111 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQA  111 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHH
Confidence            346899999999999999999998654322 23445555555555666 6778999999998731   122334455555


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...+|++++|+|+.++.+..+..+++++...     ..|+++|+||+|+...
T Consensus       112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~  161 (472)
T PRK03003        112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERG  161 (472)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCcc
Confidence            5566788999999999878777777777766542     2599999999997643

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.74  E-value=2.9e-16  Score=122.10  Aligned_cols=129  Identities=22%  Similarity=0.207  Sum_probs=88.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+++++|.+|+|||||+|+|++......+. ..+.|.........+ .+..+.++||||+.................
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            356899999999999999999999876433322 234444443334444 677899999999976433222111111111


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+...+|++++|+|+.++.+.++...+..+.+.   .  .|+++++||+|+...
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~---~--~~~ivv~NK~Dl~~~  299 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA---G--RALVIVVNKWDLVDE  299 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CcEEEEEECccCCCH
Confidence            12245677999999999988888887777666543   2  589999999998844

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.73  E-value=3.5e-16  Score=121.40  Aligned_cols=126  Identities=22%  Similarity=0.221  Sum_probs=86.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...+++++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+..................
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4578999999999999999999987643221 2233444433344444 5678999999999765433222211111111


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      ......+|++++|+|+.++.+..+...+..+.+.   .  .|+++|+||+|++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~  296 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA---G--KALVIVVNKWDLV  296 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEECcccC
Confidence            2345678999999999988888887776665543   2  5999999999998

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04171 SelB SelB subfamily

Probab=99.73  E-value=2.1e-16  Score=107.01  Aligned_cols=117  Identities=23%  Similarity=0.350  Sum_probs=76.2

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccc-cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +|+++|++|+|||||+|+|++...... .....+.|.........+..+..+.+|||||+..           +......
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~   70 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA   70 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence            689999999999999999997532111 1111234444444445552267899999999853           2222233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++++|+|+++.........+..+.. .+   .+|+++++||+|+...
T Consensus        71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~---~~~~ilv~NK~Dl~~~  119 (164)
T cd04171          71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LG---IKRGLVVLTKADLVDE  119 (164)
T ss_pred             hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hC---CCcEEEEEECccccCH
Confidence            4567899999999975544444444443332 22   1389999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.73  E-value=1.6e-16  Score=123.51  Aligned_cols=122  Identities=23%  Similarity=0.237  Sum_probs=91.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      ++|+++|.+|+|||||+|.|++....... ..++.|.........+ .+..+.++||||+....   ......+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            57999999999999999999987643222 2344555555555666 67889999999998621   1233445555555


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      +...+|++++|+|+.++++..+..+.+++...     ..|+++|+||+|..+
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~  123 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPD  123 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCcc
Confidence            66788999999999878888888777777764     259999999999654

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.72  E-value=6.1e-17  Score=112.89  Aligned_cols=118  Identities=19%  Similarity=0.245  Sum_probs=82.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccc--------------cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      ..+|+++|..++|||||+++|++......              .....+.|.......+.+ .+..+.++||||+.+   
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~---   77 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD---   77 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence            46899999999999999999986421100              011334555554444544 567889999999863   


Q ss_pred             CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                              +..........+|++++|+|+.++....+...+..+.+.-   . .++++++||+|++..
T Consensus        78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~---~-~~iIvviNK~D~~~~  133 (195)
T cd01884          78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG---V-PYIVVFLNKADMVDD  133 (195)
T ss_pred             --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC---C-CcEEEEEeCCCCCCc
Confidence                    3333344556789999999998788888878777766641   1 247899999998753

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=8.4e-16  Score=117.95  Aligned_cols=125  Identities=20%  Similarity=0.183  Sum_probs=81.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      .|+++|.+++|||||+|+|++.....  ...+..|.......+.+..+..+.++|+||+.+..........++++.+   
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kI--a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi---  234 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKI--ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI---  234 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCcc--ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence            79999999999999999999866321  1233445555555555533678999999999764333333444544433   


Q ss_pred             cCCccEEEEEEeCCCC--CCH--HHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239          101 KGGIHAVLVVFSARNR--FSQ--EEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~--~~~--~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                       .+++++++|+|+++.  ...  ....+.++|.........+|.+||+||+|+..
T Consensus       235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~  288 (424)
T PRK12297        235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE  288 (424)
T ss_pred             -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence             456999999999632  122  22344555555432223469999999999643

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.72  E-value=2.8e-17  Score=114.16  Aligned_cols=118  Identities=22%  Similarity=0.313  Sum_probs=84.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccc----------------cCCCCceeEEEeeEEEE--eeCCceEEEEeCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA----------------SAGSSGVTITCEMKTTV--LKDGQVVNVIDTPGL   79 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~--~~~~~~~~l~DtpG~   79 (170)
                      +..+|+++|+.++|||||+++|++......                .....+.|.........  . ....+.++||||+
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence            457899999999999999999985432110                00112334434444444  4 7889999999998


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+           +..........+|++++|+|+.+++.....+.+..+...-     .|+++++||+|.+..
T Consensus        81 ~~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~~~  137 (188)
T PF00009_consen   81 ED-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELG-----IPIIVVLNKMDLIEK  137 (188)
T ss_dssp             HH-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT------SEEEEEETCTSSHH
T ss_pred             cc-----------eeecccceecccccceeeeecccccccccccccccccccc-----cceEEeeeeccchhh
Confidence            63           3333334567889999999998899988888888776652     489999999999943

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=4.5e-16  Score=113.94  Aligned_cols=127  Identities=23%  Similarity=0.326  Sum_probs=82.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCC------CCceeEEEeeEEEEee-CC--ceEEEEeCCCCCCCCCCchHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTITCEMKTTVLK-DG--QVVNVIDTPGLFDSSAGSEFV   89 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~   89 (170)
                      ..+|+++|++|+|||||+|+|++.........      ....|........... .+  ..+.++||||++++..... .
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~-~   82 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD-C   82 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh-h
Confidence            46899999999999999999998765433211      1223332332222221 23  4689999999998654332 2


Q ss_pred             HHHHHH--------HH-------H---hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           90 GKEIVK--------CI-------G---LAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        90 ~~~~~~--------~~-------~---~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      ...+..        ++       +   ....++|+++|+++.. .++...+..+++.+.+.      .|+++|+||+|.+
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence            222221        11       1   0123689999999986 46777888888877652      4999999999998


Q ss_pred             CC
Q 046239          151 ED  152 (170)
Q Consensus       151 ~~  152 (170)
                      ..
T Consensus       157 ~~  158 (276)
T cd01850         157 TP  158 (276)
T ss_pred             CH
Confidence            74

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.71  E-value=3.1e-16  Score=109.73  Aligned_cols=120  Identities=19%  Similarity=0.224  Sum_probs=78.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCcee-EEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-ITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||+|+|+|......+....+.. .......+.......+.++||||+.+.....+    +++..  
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~--   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPD----DYLEE--   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHH----HHHHH--
Confidence            579999999999999999999965443332222211 01111112211235789999999986433222    22221  


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+.|+++++.+  .+++..+..+++.+.+. +    .|+++|+||+|+...
T Consensus        76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~  122 (197)
T cd04104          76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLS  122 (197)
T ss_pred             hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhh
Confidence            23467788888754  47888898888888775 2    489999999998643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.71  E-value=2.4e-15  Score=104.95  Aligned_cols=128  Identities=16%  Similarity=0.238  Sum_probs=79.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~   93 (170)
                      .....+|+++|.+|+|||||+|+|++...........+.|.......  +  ...+.++||||+........  .....+
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V--NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c--CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            34567899999999999999999998642212222334444333322  2  46899999999865322221  111112


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...........++++++++...+.+..+..+.+++...     ..|++++.||+|++..
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~~~  150 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY-----GIPVLIVLTKADKLKK  150 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc-----CCcEEEEEECcccCCH
Confidence            21111223455788888888766766665555555432     2489999999999865

>cd01864 Rab19 Rab19 subfamily

Probab=99.71  E-value=5e-16  Score=105.57  Aligned_cols=118  Identities=14%  Similarity=0.168  Sum_probs=75.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+|+++|++|+|||||++++.+..........  .+.......+.+ .+  ..+.++||||...           +...
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~   68 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNT--IGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTI   68 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCc--cceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHH
Confidence            478999999999999999999865432221111  112223333444 33  3678999999753           3333


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......+|++++|+|+++..+... ..+++.+.......  .|+++|.||+|+...
T Consensus        69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~  123 (165)
T cd01864          69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQ  123 (165)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence            4445678899999999975433222 34444444432222  489999999998755

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.71  E-value=6.1e-16  Score=115.72  Aligned_cols=127  Identities=21%  Similarity=0.227  Sum_probs=79.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      ..|+++|.+++|||||+|+|++.....  ...+..|.......+.+.....+.++|+||+.+...........+++.+  
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~v--a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--  233 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--  233 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence            358999999999999999999865321  1122334444444455523378999999999764433333444444433  


Q ss_pred             ccCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNR---FSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        .+++++++|+|+++.   -...+ ..+.+++.........+|+++|+||+|+...
T Consensus       234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence              456999999999732   11122 2334444443222234699999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=1.2e-15  Score=111.03  Aligned_cols=126  Identities=21%  Similarity=0.213  Sum_probs=88.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc-hHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS-EFVGKEIVK   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~   95 (170)
                      ..-+.|++.|.+++|||||++.|++..+-.  ...+-+|.......+.. ...+++++||||+.+-...+ +.+..+-..
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEv--A~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~  242 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEV--APYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIERQAIL  242 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCcc--CCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence            356789999999999999999999976522  23444555566666655 67799999999999743322 222222221


Q ss_pred             HHHhccCCccEEEEEEeCC--CCCCHH-HHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSAR--NRFSQE-EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~--~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         +...-.++++|++|++  .+++-+ +..+++.+...|.    .|+++|+||.|..+.
T Consensus       243 ---AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~  295 (346)
T COG1084         243 ---ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE  295 (346)
T ss_pred             ---HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence               1223447899999997  455554 4677888888875    499999999998855

>cd04154 Arl2 Arl2 subfamily

Probab=99.71  E-value=6.6e-16  Score=105.85  Aligned_cols=129  Identities=17%  Similarity=0.210  Sum_probs=80.7

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      .......+++++|++|+|||||++++++......     ..|.........+ .+..+.++||||...           +
T Consensus         9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~   71 (173)
T cd04154           9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------L   71 (173)
T ss_pred             hcCCCccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------H
Confidence            3445568999999999999999999998643211     1122223333444 567789999999864           2


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHh
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYL  161 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~  161 (170)
                      ...+..+...+|++++|+|+.+.-+..+  ...++.+.+..  ....|+++|.||+|+.... .+.+++++
T Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  140 (173)
T cd04154          72 RPYWRNYFESTDALIWVVDSSDRLRLDD--CKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREAL  140 (173)
T ss_pred             HHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHh
Confidence            3334455678899999999974422222  22223332211  1235999999999987542 13444444

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.71  E-value=3.3e-16  Score=118.74  Aligned_cols=130  Identities=27%  Similarity=0.309  Sum_probs=96.9

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      ...-..+.+++++|+|++|||||+|+|++...+.... -+|+|...-...+.. .+..+.++||.|+-++...-+..+-+
T Consensus       211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd-I~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIe  288 (454)
T COG0486         211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTD-IAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIE  288 (454)
T ss_pred             hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecC-CCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHH
Confidence            3445678899999999999999999999998766533 335666666666666 89999999999999765444444333


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .   .......+|.+|+|+|+++..+..+...++    ....  .+|+++|.||.|+....
T Consensus       289 R---s~~~i~~ADlvL~v~D~~~~~~~~d~~~~~----~~~~--~~~~i~v~NK~DL~~~~  340 (454)
T COG0486         289 R---AKKAIEEADLVLFVLDASQPLDKEDLALIE----LLPK--KKPIIVVLNKADLVSKI  340 (454)
T ss_pred             H---HHHHHHhCCEEEEEEeCCCCCchhhHHHHH----hccc--CCCEEEEEechhccccc
Confidence            2   223456789999999998767777777666    2222  25999999999988763

>cd01878 HflX HflX subfamily

Probab=99.71  E-value=1.1e-15  Score=107.35  Aligned_cols=129  Identities=24%  Similarity=0.223  Sum_probs=79.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..-.+|+++|++|+|||||+|.+++.......  ....|.........+.....+.++||||+.+...  ......+...
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~  114 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST  114 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence            34479999999999999999999987532221  1123333333344442334899999999964211  1111222222


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      + .....+|++++|+|+++.....+. .+.+.+......  ..|+++|+||+|+...
T Consensus       115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~--~~~viiV~NK~Dl~~~  168 (204)
T cd01878         115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE--DIPMILVLNKIDLLDD  168 (204)
T ss_pred             H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC--CCCEEEEEEccccCCh
Confidence            2 234578999999999755444443 333444433211  2599999999998766

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.70  E-value=4.1e-16  Score=106.03  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=74.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccC--CCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASA--GSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|++|+|||||++.|++......+.  .....|.......+.+ .+..+.++||||+..           +...+.
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence            48999999999999999998754321111  1122333333344555 578899999999874           223334


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++|++++|+|+.+.-+.  .....++.+.+..  ....|+++++||+|....
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~  122 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDA  122 (167)
T ss_pred             HHhCCCCEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence            456788999999998633211  1222333333321  123599999999998655

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.70  E-value=1.6e-15  Score=117.96  Aligned_cols=126  Identities=17%  Similarity=0.115  Sum_probs=80.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      ..|+|+|.+++|||||+|+|++.....  ...+..|.......+.+ .+..+.++|+||+.+..........+++..   
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrh---  233 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRH---  233 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHH---
Confidence            358999999999999999999865421  22334555555555555 567899999999975433333344444443   


Q ss_pred             ccCCccEEEEEEeCCCCC----CHHHH-HHHHHHHHHhc---------ccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRF----SQEEE-AAVHRLPTLFG---------KKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~----~~~~~-~~~~~l~~~~~---------~~~~~~~ivv~tk~D~~~~  152 (170)
                       ..+++++++|+|++...    ...+. .+.+.|.....         ....+|.+||+||+|+.+.
T Consensus       234 -ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da  299 (500)
T PRK12296        234 -IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA  299 (500)
T ss_pred             -HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence             34569999999986311    11122 22334443321         1224699999999998755

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.70  E-value=1e-15  Score=118.59  Aligned_cols=126  Identities=18%  Similarity=0.148  Sum_probs=84.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ..++.+|+++|++|+|||||+|+|++....... ..++.|.......+.+ .+..+.++||||+.++....+.   .-..
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~---~gi~  274 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVER---LGIE  274 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHH---HHHH
Confidence            456689999999999999999999987543222 2334555555555666 6778999999999764311111   1112


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+|++++.+..+. ++..+..   .  ..|+++|+||+|+...
T Consensus       275 ~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~--~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       275 KSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---S--KKPFILVLNKIDLKIN  325 (442)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---C--CCCEEEEEECccCCCc
Confidence            222345678999999999866665543 3333321   1  2599999999998654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.70  E-value=7.9e-16  Score=104.47  Aligned_cols=118  Identities=18%  Similarity=0.175  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +|+++|++|+|||||++++++...........+.  ......... .....+.++||||...           +......
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~~   68 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGI--DYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRNE   68 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce--eEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHHH
Confidence            7899999999999999999987653322212111  111222222 1235678999999863           2233334


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc---cccceEEEEEEcCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK---KIFDYMIVVFTGGDYLE  151 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~ivv~tk~D~~~  151 (170)
                      ....++++++|+|++++.+... ..++..+.+....   ....|+++|.||+|...
T Consensus        69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  124 (168)
T cd04119          69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK  124 (168)
T ss_pred             HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence            5678899999999974432222 3444445444332   12358999999999873

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.70  E-value=3.7e-16  Score=108.09  Aligned_cols=115  Identities=20%  Similarity=0.168  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCC--------------CCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS   86 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   86 (170)
                      +|+++|.+|+|||||+|+|++.........              ..+.+.........+ ....+.++||||+.++    
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence            489999999999999999998754322110              112333333344444 4678999999998642    


Q ss_pred             hHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           87 EFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                             ..........+|++++|+|+.+.........+..+..     ...|+++|+||+|+...
T Consensus        76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~  129 (189)
T cd00881          76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGE  129 (189)
T ss_pred             -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcch
Confidence                   2222333457799999999987776666666655544     12599999999999863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=6.9e-16  Score=112.57  Aligned_cols=116  Identities=20%  Similarity=0.223  Sum_probs=83.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC---Ccccc-------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           21 TVVLLGRTGNGKSATGNSILG---RKAFK-------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~---~~~~~-------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      +|+++|++|+|||||+++|+.   .....             ......+.|.......+.| .+..+.++||||+.++  
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df--   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF--   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence            489999999999999999963   21110             0112345666666677777 7889999999998752  


Q ss_pred             CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                               ...+......+|++++|+|+.++....+...++.+...   +  .|+++++||+|....+
T Consensus        78 ---------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~---~--~p~ivviNK~D~~~a~  132 (270)
T cd01886          78 ---------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY---N--VPRIAFVNKMDRTGAD  132 (270)
T ss_pred             ---------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCCCCCC
Confidence                     22233455667999999999878877777777766543   2  4899999999988653

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.70  E-value=8e-17  Score=114.59  Aligned_cols=128  Identities=23%  Similarity=0.183  Sum_probs=86.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ..++.+++++|.+|+|||||||+|++........... ++.........+ .+..+.+|||||+++......    +.+.
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~-~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~----~~r~  109 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV-GTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDA----EHRQ  109 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeeccc-CCCchhhHHhhc-cccceEEecCCCcccchhhhH----HHHH
Confidence            5567788899999999999999999644322211111 111111111112 568999999999998543333    3444


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+...+++.|++++++++.++.-.-+.++++.+......   +++++++|.+|...+
T Consensus       110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p  163 (296)
T COG3596         110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP  163 (296)
T ss_pred             HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc
Confidence            455566778999999999877666677777776665332   599999999998755

>cd04113 Rab4 Rab4 subfamily

Probab=99.70  E-value=7.3e-16  Score=104.27  Aligned_cols=118  Identities=19%  Similarity=0.201  Sum_probs=73.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++.+++...........+  ........... ....+.++|+||...           +.....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~   67 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG--VEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--eeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence            3789999999999999999997664332222211  11111222221 124678999999864           222333


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|+++..+... ..++..+.......  .|++++.||+|....
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~  120 (161)
T cd04113          68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQ  120 (161)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchh
Confidence            45678899999999985433332 23444444333223  489999999998754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01861 Rab6 Rab6 subfamily

Probab=99.70  E-value=9.9e-16  Score=103.52  Aligned_cols=116  Identities=18%  Similarity=0.149  Sum_probs=73.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|++|+|||||++++++......  ..+..+.........+ .+  ..+.+|||||...           +.....
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~   67 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP   67 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence            789999999999999999998765332  1222222222233333 22  3588999999753           233344


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|++++++-+..+ ..++..+....+.  ..|++++.||+|....
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~  120 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDK  120 (161)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcccc
Confidence            45678899999999974433222 2333433333221  2599999999998644

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01866 Rab2 Rab2 subfamily

Probab=99.70  E-value=9.3e-16  Score=104.62  Aligned_cols=119  Identities=15%  Similarity=0.084  Sum_probs=72.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|++|+|||||++.+++...........+.+.......... ....+.++||||...           +......
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~   72 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG-KQIKLQIWDTAGQES-----------FRSITRS   72 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEECCCcHH-----------HHHHHHH
Confidence            6899999999999999999998764333222222222112122211 234688999999653           3333344


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++++|+|+++..+..+ ..++..+.....  ...|+++|.||.|+...
T Consensus        73 ~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~  124 (168)
T cd01866          73 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESR  124 (168)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccc
Confidence            5678899999999974322222 223333333221  22589999999998743

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.70  E-value=8.3e-16  Score=120.44  Aligned_cols=126  Identities=21%  Similarity=0.307  Sum_probs=84.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...+|+++|++|+|||||+|+|++...... ....+.|.......+.+ .+..+.++||||+.......  ...+.....
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~-s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~  285 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV-DDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASL  285 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHH
Confidence            458999999999999999999998764222 12333444333334444 67788999999985421111  111222221


Q ss_pred             --HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 --GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        ..+...+|++++|+|++++.+..+...+..+.+.   .  .|+++|+||+|+...
T Consensus       286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~---~--~piIiV~NK~Dl~~~  337 (472)
T PRK03003        286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA---G--RALVLAFNKWDLVDE  337 (472)
T ss_pred             HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh
Confidence              1245688999999999888888887766655442   2  599999999998764

>cd04124 RabL2 RabL2 subfamily

Probab=99.69  E-value=6.9e-16  Score=104.57  Aligned_cols=116  Identities=18%  Similarity=0.115  Sum_probs=72.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++.+++...........+.+..  ....... ....+.+|||||...           +.....
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~   67 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLY--KHNAKFEGKTILVDFWDTAGQER-----------FQTMHA   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEE--EEEEEECCEEEEEEEEeCCCchh-----------hhhhhH
Confidence            36899999999999999999876542221111111211  1112221 234577999999864           233444


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .+..++|++++|+|++++.+..+ ..+++.+.+..   ...|+++|.||+|+..
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~  118 (161)
T cd04124          68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDP  118 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCch
Confidence            56778899999999975544333 33444444432   1259999999999743

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01865 Rab3 Rab3 subfamily

Probab=99.69  E-value=1.3e-15  Score=103.53  Aligned_cols=118  Identities=15%  Similarity=0.109  Sum_probs=72.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++.+++.........+  .+........... ....+.+|||||...           +.....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~   68 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVST--VGIDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--eeeEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence            57999999999999999999986642221111  1111222222221 124688999999763           233344


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+++++++|+|..+..+... ..+++.+.+....  ..|+++|.||+|+.+.
T Consensus        69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~  121 (165)
T cd01865          69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDE  121 (165)
T ss_pred             HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcc
Confidence            56788999999999874322221 2333333332211  2489999999998755

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.69  E-value=1.7e-15  Score=114.32  Aligned_cols=129  Identities=22%  Similarity=0.196  Sum_probs=80.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+|+++|.+|+|||||+|+|++......  ...+.|.........+..+..+.++||||+...  .+......+...
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~t  262 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRAT  262 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHH
Confidence            3448999999999999999999999763221  112233333334444535678999999999531  112222223322


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEA-AVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      . .....+|++++|+|++++....+.. +.+.+.+. +. ...|+++|+||+|+...
T Consensus       263 l-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~  316 (351)
T TIGR03156       263 L-EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE  316 (351)
T ss_pred             H-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh
Confidence            2 2356789999999998555444432 23334332 21 12599999999998754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.69  E-value=1.2e-15  Score=106.47  Aligned_cols=116  Identities=17%  Similarity=0.226  Sum_probs=75.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC--cccccc------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR--KAFKAS------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG   85 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~--~~~~~~------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   85 (170)
                      ++|+++|.+|+|||||++++++.  ......            ....+.+.......+.+ ....+.++||||+.+    
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~----   77 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD----   77 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence            58999999999999999999862  111110            01122333333334444 567899999999975    


Q ss_pred             chHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           86 SEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                             +......+..++|++++|+|+.+........++..+..   ..  .|+++|+||+|+...
T Consensus        78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~  132 (194)
T cd01891          78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA  132 (194)
T ss_pred             -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence                   22333345667899999999986554444444433322   22  489999999998755

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.69  E-value=2.6e-15  Score=122.74  Aligned_cols=126  Identities=22%  Similarity=0.213  Sum_probs=92.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+|+++|.+|+|||||+|+|++...... ...++.|.........+ .+..+.+|||||+....   +.....+...
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~  347 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQ  347 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHH
Confidence            3446899999999999999999998754222 22345666555555555 67789999999987421   1234455555


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+...+|++++|+|+.++++..+..+++.+...     ..|+++|+||+|....
T Consensus       348 ~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~  398 (712)
T PRK09518        348 AQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQAS  398 (712)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccc
Confidence            55667788999999999878888887777777542     2599999999998654

>cd00154 Rab Rab family

Probab=99.69  E-value=1.3e-15  Score=102.17  Aligned_cols=117  Identities=20%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|++|+|||||++.+++...........+.+.......... ....+.++|+||...           +......
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~-----------~~~~~~~   68 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG-KTVKLQIWDTAGQER-----------FRSITPS   68 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC-EEEEEEEEecCChHH-----------HHHHHHH
Confidence            3789999999999999999998775443222222222211112111 235678999999853           3334445


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      ...++|++++|+++.+.-+... ..++..+.....  ...|+++++||+|..
T Consensus        69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~  118 (159)
T cd00154          69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE  118 (159)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence            6678899999999974322222 233333433321  125999999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.69  E-value=1.6e-15  Score=102.72  Aligned_cols=119  Identities=18%  Similarity=0.107  Sum_probs=73.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|++|+|||||+|++++...........+............ ....+.+||+||...           +......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~   69 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD-TTVKFEIWDTAGQER-----------YRSLAPM   69 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCchHH-----------HHHHHHH
Confidence            5899999999999999999998775432222222111111112211 234678999999753           2223334


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++++|+|+++.-+... ..+++.+......  ..|++++.||+|....
T Consensus        70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~  121 (163)
T cd01860          70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLESK  121 (163)
T ss_pred             HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence            5667899999999973322222 3344444443322  2489999999997743

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.69  E-value=8.1e-16  Score=105.30  Aligned_cols=122  Identities=20%  Similarity=0.185  Sum_probs=73.1

Q ss_pred             EEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccC
Q 046239           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKG  102 (170)
Q Consensus        24 lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  102 (170)
                      ++|++|+|||||+|+|++.... . ....+.|.........+ . +..+.++||||+.+.....+....++.    ....
T Consensus         1 iiG~~~~GKStll~~l~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPK-V-ANYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcc-c-cCCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence            5899999999999999997641 1 11223444444444444 5 788999999998642211111222222    2334


Q ss_pred             CccEEEEEEeCCCCC-----CHH-H-HHHHHHHHHHhcc-----cccceEEEEEEcCCCCCC
Q 046239          103 GIHAVLVVFSARNRF-----SQE-E-EAAVHRLPTLFGK-----KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       103 ~~~~il~v~~~~~~~-----~~~-~-~~~~~~l~~~~~~-----~~~~~~ivv~tk~D~~~~  152 (170)
                      .+|++++|+|+.+..     ... + ..+...+......     ....|+++|+||+|....
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~  135 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA  135 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence            579999999997442     222 2 2233333322111     123699999999998766

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.68  E-value=1.7e-15  Score=102.53  Aligned_cols=117  Identities=21%  Similarity=0.218  Sum_probs=73.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|++|+|||||++++++.........  ..+.........+ .+  ..+.++|+||...           +....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~   66 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKS--TIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence            3789999999999999999998764222111  2222222233333 23  4678999999753           22333


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+|+.+..+... ..++..+......  ..|++++.||+|....
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~  120 (164)
T smart00175       67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQ  120 (164)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccc
Confidence            345677899999999974433332 2233333333222  3599999999998753

Rab GTPases are implicated in vesicle trafficking.

>cd01868 Rab11_like Rab11-like

Probab=99.68  E-value=2.1e-15  Score=102.42  Aligned_cols=117  Identities=19%  Similarity=0.172  Sum_probs=72.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|++|+|||||++++++........  +..+.......... .+  ..+.++|+||...           +....
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~   69 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSK--STIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence            579999999999999999999776422211  12222222233333 22  3678999999753           22223


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......++++++|+|+.+..+..+ ..++..+.+....  ..|+++|.||+|+...
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~  123 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHL  123 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence            344567899999999974333322 2333434333222  2489999999998654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.68  E-value=1.9e-15  Score=102.96  Aligned_cols=119  Identities=16%  Similarity=0.113  Sum_probs=73.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..+|+++|++|+|||||++.+++.........+.+.  ......+.+.. ...+.++||||...+           ....
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~--~~~~~~~~~~~~~~~l~l~D~~g~~~~-----------~~~~   69 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGI--DFKIRTIELDGKKIKLQIWDTAGQERF-----------RTIT   69 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccc--eEEEEEEEECCEEEEEEEEeCCchHHH-----------HHHH
Confidence            368999999999999999999976542221222221  12222233311 246789999997532           2222


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+|++++.+... ..++..+......  ..|+++|.||+|+.+.
T Consensus        70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~~  123 (167)
T cd01867          70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASE--DVERMLVGNKCDMEEK  123 (167)
T ss_pred             HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECcccccc
Confidence            345578899999999974433222 2333333332212  2489999999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>CHL00071 tufA elongation factor Tu

Probab=99.67  E-value=5.9e-16  Score=119.21  Aligned_cols=122  Identities=18%  Similarity=0.220  Sum_probs=86.2

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      .+.++..+|+++|.+++|||||+++|++.....              ......+.|.......+.+ .+..+.++||||+
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh   85 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGH   85 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCCh
Confidence            356777999999999999999999999752211              1112245555544444444 5678899999997


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~  152 (170)
                      .+           +..........+|++++|+|+.+++..++.+.+..+... +    .| +++++||+|+.+.
T Consensus        86 ~~-----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g----~~~iIvvvNK~D~~~~  143 (409)
T CHL00071         86 AD-----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-G----VPNIVVFLNKEDQVDD  143 (409)
T ss_pred             HH-----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEEEccCCCCH
Confidence            52           333333445678999999999888888887777766553 1    25 7889999999864

>cd04122 Rab14 Rab14 subfamily

Probab=99.67  E-value=3.2e-15  Score=101.69  Aligned_cols=118  Identities=14%  Similarity=0.154  Sum_probs=71.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++.+++...........+..  ......... ....+.+|||||...           +.....
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~   69 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE--FGTRIIEVNGQKIKLQIWDTAGQER-----------FRAVTR   69 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCccccee--EEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence            579999999999999999999765322211111111  111122221 123578999999753           233334


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+++++++|+|++++.+... ..+++.+.....  ...|+++|.||+|+...
T Consensus        70 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~  122 (166)
T cd04122          70 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQ  122 (166)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccc
Confidence            45678899999999975432222 233333333221  22589999999998654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.67  E-value=2.2e-15  Score=103.01  Aligned_cols=120  Identities=15%  Similarity=0.093  Sum_probs=73.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++.+++...........  ........+.+. ....+.+|||||..++.          .....
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~   70 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI--GVDFRERTVEIDGERIKVQLWDTAGQERFR----------KSMVQ   70 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccccce--eEEEEEEEEEECCeEEEEEEEeCCChHHHH----------HhhHH
Confidence            589999999999999999998765432211111  111222223331 12468899999976421          11233


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++|++++|+|++++-+.... .+++.+..... ....|+++|.||+|+...
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~  124 (170)
T cd04115          71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQ  124 (170)
T ss_pred             HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhh
Confidence            456788999999999754433332 33333443321 123599999999997654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.67  E-value=2e-15  Score=108.33  Aligned_cols=116  Identities=20%  Similarity=0.233  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccc--c--------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKA--S--------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      +|+++|+.|+|||||+++|+.......  +              ....+.+.......+.+ .+..+.++||||+.++  
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f--   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF--   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence            489999999999999999975321100  0              11223344445556666 7789999999999863  


Q ss_pred             CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                               ..........+|++++|+++.++.......+++.+...   .  .|+++++||+|....+
T Consensus        78 ---------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~---~--~P~iivvNK~D~~~a~  132 (237)
T cd04168          78 ---------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL---N--IPTIIFVNKIDRAGAD  132 (237)
T ss_pred             ---------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECccccCCC
Confidence                     11222344566999999999878777666666666543   2  4899999999988653

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.67  E-value=2.1e-15  Score=106.33  Aligned_cols=116  Identities=16%  Similarity=0.181  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccc-----------------------------cCCCCceeEEEeeEEEEeeCCceE
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKA-----------------------------SAGSSGVTITCEMKTTVLKDGQVV   71 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~   71 (170)
                      +|+++|++|+|||||+++|++......                             .....+.|.......+.+ .+..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence            589999999999999999975432111                             011134555555555555 67889


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           72 NVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .++||||+.++       ...+    ......+|++++|+|+.++....+...+..+.. .+   .+++++|+||+|+..
T Consensus        80 ~liDTpG~~~~-------~~~~----~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~---~~~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHEQY-------TRNM----VTGASTADLAILLVDARKGVLEQTRRHSYILSL-LG---IRHVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHHHH-------HHHH----HHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cC---CCcEEEEEEchhccc
Confidence            99999998531       1122    234567899999999987766655554444433 22   136788999999875


Q ss_pred             C
Q 046239          152 D  152 (170)
Q Consensus       152 ~  152 (170)
                      .
T Consensus       145 ~  145 (208)
T cd04166         145 Y  145 (208)
T ss_pred             C
Confidence            4

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.67  E-value=2.9e-15  Score=101.88  Aligned_cols=118  Identities=14%  Similarity=0.185  Sum_probs=72.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++.+++.........+  .+........... ....+.++||||...           +.....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~   69 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESYIST--IGVDFKIRTIELDGKTIKLQIWDTAGQER-----------FRTITS   69 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEEEEECCEEEEEEEEECCCcHh-----------HHHHHH
Confidence            57999999999999999999976542221111  1222222223321 123678999999753           223333


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|+++.-+... ..+++.+......  ..|+++|.||+|....
T Consensus        70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~  122 (166)
T cd01869          70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDK  122 (166)
T ss_pred             HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhcccc
Confidence            45678899999999974322222 2333333333212  2489999999997654

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.67  E-value=2.6e-15  Score=116.77  Aligned_cols=125  Identities=25%  Similarity=0.281  Sum_probs=81.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+.+|+++|++|+|||||+|+|++....... ..++.|.......+.+ .+..+.++||||+.++..   .....-..
T Consensus       212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~---~ie~~gi~  286 (449)
T PRK05291        212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDD---EVEKIGIE  286 (449)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCcc---HHHHHHHH
Confidence            345689999999999999999999987542221 1233444444444555 677899999999975321   11111111


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+|++++.+..+...+..    .   ...|+++|+||+|+...
T Consensus       287 ~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~---~~~piiiV~NK~DL~~~  336 (449)
T PRK05291        287 RSREAIEEADLVLLVLDASEPLTEEDDEILEE----L---KDKPVIVVLNKADLTGE  336 (449)
T ss_pred             HHHHHHHhCCEEEEEecCCCCCChhHHHHHHh----c---CCCCcEEEEEhhhcccc
Confidence            12234567899999999986666555444332    1   12599999999998754

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.67  E-value=1.9e-15  Score=110.60  Aligned_cols=129  Identities=20%  Similarity=0.307  Sum_probs=77.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCC------CCceeEEEeeEEEEee-C--CceEEEEeCCCCCCCCCCchHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTITCEMKTTVLK-D--GQVVNVIDTPGLFDSSAGSEFV   89 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~--~~~~~l~DtpG~~~~~~~~~~~   89 (170)
                      .++|+|+|.+|+|||||||+|++.........      ....+........... .  ...+.++||||+++.......+
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            46899999999999999999998764433210      1111222222222221 1  2468899999999754433221


Q ss_pred             -------HHHHHHHHH---------hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           90 -------GKEIVKCIG---------LAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        90 -------~~~~~~~~~---------~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                             ..++..++.         ....++|++||+++++ +++.+.|.+.++.|.+..      ++|-|+.|+|.+..
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~v------NvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRV------NVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS------EEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccc------cEEeEEecccccCH
Confidence                   112222221         1235789999999985 678888988888887763      99999999999987


Q ss_pred             C
Q 046239          153 N  153 (170)
Q Consensus       153 ~  153 (170)
                      .
T Consensus       158 ~  158 (281)
T PF00735_consen  158 E  158 (281)
T ss_dssp             H
T ss_pred             H
Confidence            3

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK11058 GTPase HflX; Provisional

Probab=99.67  E-value=4.4e-15  Score=114.46  Aligned_cols=127  Identities=21%  Similarity=0.119  Sum_probs=80.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      -+.|+++|.+|+|||||+|+|++......  ..++.|.........++....+.++||||+...  .+......+... .
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~t-l  271 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKAT-L  271 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHH-H
Confidence            36899999999999999999998765321  122233333334444533448899999999542  112222333332 2


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAA-VHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|++++....+... .+++.+....  ..|+++|+||+|+...
T Consensus       272 ~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~--~~pvIiV~NKiDL~~~  324 (426)
T PRK11058        272 QETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH--EIPTLLVMNKIDMLDD  324 (426)
T ss_pred             HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC--CCCEEEEEEcccCCCc
Confidence            34578899999999986544444332 3334443222  2599999999998754

>cd04123 Rab21 Rab21 subfamily

Probab=99.67  E-value=4.1e-15  Score=100.35  Aligned_cols=118  Identities=16%  Similarity=0.097  Sum_probs=72.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++++++..........  .+........... ....+.++|+||...           +.....
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~   67 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHEST--TQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCc--cceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence            37899999999999999999987653221111  1111112222221 223688999999653           222233


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|+++..+... ..+++.+......  ..|+++|+||+|....
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~  120 (162)
T cd04123          68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ  120 (162)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence            34567899999999874433222 2334444444333  3599999999998754

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04149 Arf6 Arf6 subfamily

Probab=99.66  E-value=9.6e-15  Score=99.71  Aligned_cols=125  Identities=16%  Similarity=0.189  Sum_probs=78.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      +..+|+++|.+|+|||||++.++....... .    .|.......... ....+.+|||||...           +...+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~-~----~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~   70 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-I----PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLW   70 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccc-c----CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence            457899999999999999999986443211 1    121222223333 567899999999863           33334


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC-ChhhHHHHh
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED-NEKTLEDYL  161 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~-~~~~~~~~~  161 (170)
                      ..++.++|++++|+|+++..+..  ...+++.+.+...  ...|+++|.||+|+.+. ....+++++
T Consensus        71 ~~~~~~a~~ii~v~D~t~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~  135 (168)
T cd04149          71 RHYYTGTQGLIFVVDSADRDRID--EARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKL  135 (168)
T ss_pred             HHHhccCCEEEEEEeCCchhhHH--HHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHc
Confidence            45667889999999997432222  2233444443221  22599999999998643 123455544

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.66  E-value=7.3e-15  Score=100.19  Aligned_cols=113  Identities=17%  Similarity=0.114  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      .|+++|++|+|||||++.+++.... ....+.+    .....+.+ .+..+.++|+||...           +...+..+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~-~~~~t~g----~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPK-KVAPTVG----FTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCc-cccCccc----ceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence            4789999999999999999986321 1111112    22233444 577899999999753           33444556


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      +.++|++++|+|+++..+..+  ...++...+..  ....|+++|.||.|+.+.
T Consensus        64 ~~~a~~ii~V~D~s~~~s~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~  115 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRVQE--VKEILRELLQHPRVSGKPILVLANKQDKKNA  115 (167)
T ss_pred             HcCCCEEEEEEECCchhHHHH--HHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence            788899999999974422222  22333333322  123599999999998765

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00880 Era_like Era (E

Probab=99.66  E-value=9.7e-15  Score=97.72  Aligned_cols=120  Identities=26%  Similarity=0.223  Sum_probs=76.6

Q ss_pred             EEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCC
Q 046239           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGG  103 (170)
Q Consensus        24 lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (170)
                      ++|++|+|||||+|+|++......+ ...+.+.........+.....+.++||||+.++.........    .+......
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~----~~~~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREE----LARRVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHH----HHHHHHHh
Confidence            5899999999999999987554221 122233333333333322678999999999876443332212    22234466


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239          104 IHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       104 ~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +|++++|+++.................     ...|+++|+||+|+....
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~~  120 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLPEE  120 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCChh
Confidence            799999999986655555442222222     125999999999998763

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04155 Arl3 Arl3 subfamily

Probab=99.66  E-value=4.3e-15  Score=101.61  Aligned_cols=119  Identities=19%  Similarity=0.132  Sum_probs=74.6

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ...+..+++++|++|+|||||++.+++......     ..+.........+ .+..+.++|+||...           +.
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~   72 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IR   72 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HH
Confidence            344578999999999999999999998643211     1111122233444 567889999999753           23


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+.....+++++++|+|+.+.-+..  ....++...+..  ....|+++++||+|..+.
T Consensus        73 ~~~~~~~~~~~~ii~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  130 (173)
T cd04155          73 PYWRNYFENTDCLIYVIDSADKKRLE--EAGAELVELLEEEKLAGVPVLVFANKQDLATA  130 (173)
T ss_pred             HHHHHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence            33344557889999999987321111  112222222211  112599999999998765

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK04213 GTP-binding protein; Provisional

Probab=99.66  E-value=1.4e-14  Score=101.51  Aligned_cols=124  Identities=21%  Similarity=0.158  Sum_probs=74.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH-
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK-   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-   95 (170)
                      ....+|+++|++|+|||||+|+|++.... .+ ..++.|..  ...+.+ .  .+.+|||||+.............+.. 
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~-~~~~~t~~--~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR-VG-KRPGVTRK--PNHYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCceeeC--ceEEee-c--ceEEEeCCccccccccCHHHHHHHHHH
Confidence            34578999999999999999999987632 21 12233332  223333 2  68999999986433322222222322 


Q ss_pred             ---HHHhccCCccEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 ---CIGLAKGGIHAVLVVFSARNRFS-----------QEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ---~~~~~~~~~~~il~v~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         ++......++++++|+|......           ..+..++..+...     ..|+++|+||+|+...
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~~~  145 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKIKN  145 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECccccCc
Confidence               22223456688999999853211           1223333333321     2599999999998755

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.66  E-value=2.5e-15  Score=105.58  Aligned_cols=117  Identities=15%  Similarity=0.191  Sum_probs=74.3

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCcc-ccccCCCCceeEEEeeEEEEee--------------------------------C
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTITCEMKTTVLK--------------------------------D   67 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------------~   67 (170)
                      +|+++|++|+|||||+.+|++... ...+....+.+.........+.                                .
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence            689999999999999999988732 2222222233333332222220                                1


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccceEEEEEEc
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-FSQEEEAAVHRLPTLFGKKIFDYMIVVFTG  146 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk  146 (170)
                      ...+.++||||+.+           +...+......+|++++|+|+.++ ........+..+... +   ..|+++|+||
T Consensus        82 ~~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~---~~~iiivvNK  146 (203)
T cd01888          82 VRHVSFVDCPGHEI-----------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G---LKHIIIVQNK  146 (203)
T ss_pred             ccEEEEEECCChHH-----------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C---CCcEEEEEEc
Confidence            26789999999742           333444455678999999999853 334444444444332 1   1479999999


Q ss_pred             CCCCCC
Q 046239          147 GDYLED  152 (170)
Q Consensus       147 ~D~~~~  152 (170)
                      +|+...
T Consensus       147 ~Dl~~~  152 (203)
T cd01888         147 IDLVKE  152 (203)
T ss_pred             hhccCH
Confidence            998764

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04140 ARHI_like ARHI subfamily

Probab=99.66  E-value=3.4e-15  Score=101.53  Aligned_cols=119  Identities=18%  Similarity=0.118  Sum_probs=74.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|.+|+|||||++++++...........+.+ ......... ....+.++||||...+.           .....
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSK-NICTLQITDTTGSHQFP-----------AMQRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECC-EEEEEEEEECCCCCcch-----------HHHHH
Confidence            579999999999999999999765422212221111 111111111 23467899999997531           12223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccceEEEEEEcCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKK-IFDYMIVVFTGGDYLE  151 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~~  151 (170)
                      ....++++++|+++++..+... ..+++.+.+..+.. ...|+++|.||+|+..
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH  122 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence            4567899999999975444332 34555566554321 2359999999999865

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.66  E-value=3.5e-15  Score=100.40  Aligned_cols=116  Identities=22%  Similarity=0.243  Sum_probs=73.0

Q ss_pred             EEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCC
Q 046239           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGG  103 (170)
Q Consensus        24 lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (170)
                      |+|.+|+|||||+|++++......  ...+.|.......+.+ .+..+.++||||+.++.....  ...+....... .+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence            589999999999999998753222  2234444444455555 567899999999986543221  11111111111 58


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          104 IHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       104 ~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +|++++|+|+.+. .. ....+..+.+.     ..|+++|+||+|+.+.
T Consensus        75 ~d~vi~v~d~~~~-~~-~~~~~~~~~~~-----~~~~iiv~NK~Dl~~~  116 (158)
T cd01879          75 PDLIVNVVDATNL-ER-NLYLTLQLLEL-----GLPVVVALNMIDEAEK  116 (158)
T ss_pred             CcEEEEEeeCCcc-hh-HHHHHHHHHHc-----CCCEEEEEehhhhccc
Confidence            8999999999742 22 22333333321     2599999999998765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01863 Rab18 Rab18 subfamily

Probab=99.66  E-value=4.7e-15  Score=100.25  Aligned_cols=117  Identities=20%  Similarity=0.132  Sum_probs=72.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+++++|++|+|||||++++++...........+.+  .......+. ....+.++||||...+           .....
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~   67 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVD--FKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTS   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccce--EEEEEEEECCEEEEEEEEECCCchhh-----------hhhhH
Confidence            378999999999999999999875433222222222  122222221 2346889999997542           22223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      .....+|++++|+|+++..+... ..++..+..... ....|+++|.||+|+.
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~  119 (161)
T cd01863          68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKE  119 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence            44567899999999874433332 223444444322 2235899999999987

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.65  E-value=1e-14  Score=100.15  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=74.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...+|+++|++|+|||||++.+++......     ..|.........+ ....+.++|+||...           +...+
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~   76 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSW   76 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHH
Confidence            357899999999999999999987543221     1222223334444 567899999999864           23333


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      .....++|++++|+|+++..+..  ...+++.+.+...  ...|+++++||+|+...
T Consensus        77 ~~~~~~~d~vi~V~D~s~~~~~~--~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~  131 (174)
T cd04153          77 NTYYTNTDAVILVIDSTDRERLP--LTKEELYKMLAHEDLRKAVLLVLANKQDLKGA  131 (174)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCCEEEEEECCCCCCC
Confidence            34557889999999997432221  1122333332211  22599999999998653

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.65  E-value=6.5e-15  Score=101.99  Aligned_cols=126  Identities=11%  Similarity=0.039  Sum_probs=78.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+|+++|++|+|||||++.+.+......     ..|.........+ .+..+.++|+||...           ....
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~   77 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL   77 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            5568999999999999999999998643211     1111122233334 567889999999863           2333


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHh
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYL  161 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~  161 (170)
                      +..+...+|++++|+|+.+.-+.  ....+++.+.+..  ....|+++|+||+|..... .+.+++.+
T Consensus        78 ~~~~~~~ad~ii~vvD~~~~~~~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l  143 (184)
T smart00178       78 WKDYFPEVNGIVYLVDAYDKERF--AESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYAL  143 (184)
T ss_pred             HHHHhCCCCEEEEEEECCcHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHc
Confidence            44566789999999999743111  1122233333221  1235999999999986442 23455444

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04110 Rab35 Rab35 subfamily

Probab=99.65  E-value=7.7e-15  Score=102.84  Aligned_cols=119  Identities=17%  Similarity=0.126  Sum_probs=73.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ...+|+++|++|+|||||++.+.+.........+.+  .......+.... ...+.+|||||...+           ...
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----------~~~   71 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--VDFKIRTVEINGERVKLQIWDTAGQERF-----------RTI   71 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccc--ceeEEEEEEECCEEEEEEEEeCCCchhH-----------HHH
Confidence            357899999999999999999997654222111111  112222333311 246789999997642           222


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......++++++|+|++++-+..+ ..+++.+....   ...|+++|.||+|+...
T Consensus        72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~  125 (199)
T cd04110          72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPER  125 (199)
T ss_pred             HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence            3345677899999999974432222 23333333322   22489999999998754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.65  E-value=1e-14  Score=100.24  Aligned_cols=116  Identities=15%  Similarity=0.131  Sum_probs=74.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...+|+++|.+|+|||||++.+.......     ...|.........+ ....+.++||||...           +...+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~   74 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLW   74 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHH
Confidence            35889999999999999999996433211     11222233333444 567899999999864           33344


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      ..+..+++++++|+|++++.+..  ...+++.+.+...  ...|+++|.||+|+.+.
T Consensus        75 ~~~~~~ad~ii~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~  129 (175)
T smart00177       75 RHYYTNTQGLIFVVDSNDRDRID--EAREELHRMLNEDELRDAVILVFANKQDLPDA  129 (175)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence            45678899999999997432222  2233333333221  12489999999998654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd00879 Sar1 Sar1 subfamily

Probab=99.65  E-value=9.7e-15  Score=101.44  Aligned_cols=128  Identities=13%  Similarity=0.094  Sum_probs=80.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .....+++++|++|+|||||++.+++...... .    .|.......+.+ .+..+.++|+||...           +..
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-~----~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~   78 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQH-V----PTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARR   78 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCccc-C----CccCcceEEEEE-CCEEEEEEECCCCHH-----------HHH
Confidence            45568899999999999999999998654211 1    122222334444 567889999999753           223


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC-ChhhHHHHhh
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED-NEKTLEDYLG  162 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~-~~~~~~~~~~  162 (170)
                      .+..+...++++++|+|..+.-+..  ....++.+.+..  ....|++++.||+|+... ..+.+++++.
T Consensus        79 ~~~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~  146 (190)
T cd00879          79 LWKDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALG  146 (190)
T ss_pred             HHHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhC
Confidence            3344567889999999987431111  122334333321  123599999999998643 2245555543

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.65  E-value=7.4e-15  Score=98.53  Aligned_cols=113  Identities=22%  Similarity=0.205  Sum_probs=71.5

Q ss_pred             EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhcc
Q 046239           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAK  101 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (170)
                      |+++|++|+|||||+|+|++.........    |.......... ....+.++|+||...           +...+..+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~----t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP----TVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccC----CCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence            78999999999999999998764322221    22222233334 457789999999864           233344456


Q ss_pred             CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239          102 GGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+|++++|+|+.+..+.  .....++.+....  ....|+++|+||+|....
T Consensus        66 ~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  116 (159)
T cd04159          66 RGVNAIVYVVDAADRTAL--EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA  116 (159)
T ss_pred             hcCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence            778999999998732111  1122233332221  122489999999998765

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.65  E-value=5.7e-15  Score=100.44  Aligned_cols=113  Identities=14%  Similarity=0.182  Sum_probs=72.4

Q ss_pred             EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhcc
Q 046239           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAK  101 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (170)
                      |+++|.+|+|||||++.+++.........+.+    ........ ....+.+|||||...+           ...+....
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g----~~~~~i~~-~~~~l~i~Dt~G~~~~-----------~~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG----FNSVAIPT-QDAIMELLEIGGSQNL-----------RKYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCC----cceEEEee-CCeEEEEEECCCCcch-----------hHHHHHHH
Confidence            78999999999999999997643222111111    12223333 5678999999998752           22333456


Q ss_pred             CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          102 GGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       102 ~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .++|++++|+|.++..+...  ...++.+........|+++|.||.|+...
T Consensus        66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~~  114 (164)
T cd04162          66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPAA  114 (164)
T ss_pred             hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence            77899999999874432221  22334443322233599999999998765

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01862 Rab7 Rab7 subfamily

Probab=99.65  E-value=8.2e-15  Score=100.00  Aligned_cols=118  Identities=19%  Similarity=0.127  Sum_probs=70.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|++|+|||||++++.+...........+.+  .......+ .+  ..+.++|+||...           +....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~   66 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLG   66 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceE--EEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHH
Confidence            378999999999999999999865422211121111  11122233 22  3466899999753           22333


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcc--cccceEEEEEEcCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGK--KIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (170)
                      .....+++++++++|++++.+.... .+.+.+......  ....|+++|.||+|...
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (172)
T cd01862          67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE  123 (172)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence            4456788999999999744332221 222222222221  11359999999999984

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.65  E-value=8.9e-15  Score=102.65  Aligned_cols=118  Identities=12%  Similarity=0.053  Sum_probs=72.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|++|+|||||++.+++.........+  .........+.+.  ....+.+|||||...           +....
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t--~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~~~   67 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKAT--IGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGGMT   67 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--eeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhhhH
Confidence            36899999999999999999976532221111  1111122223331  234678999999864           22333


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccceEEEEEEcCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG--KKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~  150 (170)
                      ..++.+++++++|+|++++.+... ..+...+.....  .....|+++|.||+|+.
T Consensus        68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~  123 (201)
T cd04107          68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK  123 (201)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence            456678899999999974433332 223344443321  11234999999999986

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01890 LepA LepA subfamily

Probab=99.65  E-value=4.8e-15  Score=101.93  Aligned_cols=117  Identities=18%  Similarity=0.199  Sum_probs=71.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcccc------ccC-------CCCceeEEEeeEEEEe----eCCceEEEEeCCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFK------ASA-------GSSGVTITCEMKTTVL----KDGQVVNVIDTPGLFDS   82 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~------~~~-------~~~~~t~~~~~~~~~~----~~~~~~~l~DtpG~~~~   82 (170)
                      ++|+++|.+|+|||||++++++.....      ...       ...+.+.........+    .....+.+|||||+.++
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            468999999999999999998742100      000       0112222222111211    13456789999999753


Q ss_pred             CCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                                 ......+...+|++++|+|+.+..+..+...+..+..   ..  .|+++|+||+|+...
T Consensus        81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~  134 (179)
T cd01890          81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSA  134 (179)
T ss_pred             -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcC
Confidence                       2222334557899999999986665555444433322   12  489999999998654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.65  E-value=1.6e-14  Score=97.80  Aligned_cols=122  Identities=18%  Similarity=0.236  Sum_probs=74.7

Q ss_pred             EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHHHHh
Q 046239           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKCIGL   99 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~~~~   99 (170)
                      |+++|++|+|||||+|+|++...........+.+....  ....  ...+.++||||+.......  .............
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN--FFNV--NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE--EEEc--cCeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            78999999999999999994322111122223333222  2222  3489999999987643211  1111111111122


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....++++++++.....+......++++...   .  .|+++++||+|++..
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~---~--~~vi~v~nK~D~~~~  125 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL---G--IPFLVVLTKADKLKK  125 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc---C--CCEEEEEEchhcCCh
Confidence            33456788899998756566666666666653   1  489999999998755

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.65  E-value=1.3e-14  Score=100.17  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=77.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .+...+|+++|..|+|||||++.++.......     ..|.......+.. ....+.++|+||...           +..
T Consensus        14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~   76 (181)
T PLN00223         14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRP   76 (181)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHH
Confidence            35567999999999999999999985433211     1222222333444 567899999999753           344


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      .+..++.++|++++|+|+++..+..  ....++.+.+...  ...|+++|.||.|+.+.
T Consensus        77 ~~~~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~  133 (181)
T PLN00223         77 LWRHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
T ss_pred             HHHHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence            4555678889999999997432222  2233444443221  23589999999998655

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.65  E-value=5.4e-15  Score=120.90  Aligned_cols=126  Identities=22%  Similarity=0.270  Sum_probs=85.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...+|+++|++|+|||||+|+|++...... ....+.|.........+ .+..+.++||||+......  ..+.+.....
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v-~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~--~~~~e~~~~~  524 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV-NDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHK--LTGAEYYSSL  524 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccc-CCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCccc--chhHHHHHHH
Confidence            347999999999999999999998764211 11233443333333444 6778889999998642211  1222222222


Q ss_pred             --HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 --GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        ......+|++++|+|++++.+..+...+..+.+.   .  .|+++|+||+|+...
T Consensus       525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~---~--~piIiV~NK~DL~~~  576 (712)
T PRK09518        525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA---G--RALVLVFNKWDLMDE  576 (712)
T ss_pred             HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEEchhcCCh
Confidence              1245778999999999888888887766655442   2  599999999998764

>cd01889 SelB_euk SelB subfamily

Probab=99.65  E-value=4.9e-15  Score=103.25  Aligned_cols=116  Identities=17%  Similarity=0.295  Sum_probs=72.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCcc---c--cccCCCCceeEEEeeEEEEee-------------CCceEEEEeCCCCCCC
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKA---F--KASAGSSGVTITCEMKTTVLK-------------DGQVVNVIDTPGLFDS   82 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~---~--~~~~~~~~~t~~~~~~~~~~~-------------~~~~~~l~DtpG~~~~   82 (170)
                      +|+++|++|+|||||++++++...   .  .......+.|.........+.             .+..+.++||||+.. 
T Consensus         2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-   80 (192)
T cd01889           2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS-   80 (192)
T ss_pred             eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence            689999999999999999997310   0  000111233333333333331             256889999999852 


Q ss_pred             CCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                                +..........+|++++|+|+.++.+..+...+..... .    ..|+++++||+|....
T Consensus        81 ----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~-~----~~~~iiv~NK~Dl~~~  135 (192)
T cd01889          81 ----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI-L----CKKLIVVLNKIDLIPE  135 (192)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH-c----CCCEEEEEECcccCCH
Confidence                      22222233456799999999986666655444443222 2    2489999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.65  E-value=1e-14  Score=98.68  Aligned_cols=116  Identities=22%  Similarity=0.182  Sum_probs=71.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee---CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK---DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      +|+++|.+|+|||||++.+++.........+  ...........+.   ....+.+|||||...           +....
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~   68 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKT--IGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--EEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence            6899999999999999999986542221111  1111112222221   234688999999753           23333


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...+|++++|+++.+.-+... ..++..+....   ...|+++|.||+|+...
T Consensus        69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~  121 (162)
T cd04106          69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQ  121 (162)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhcccc
Confidence            445678899999999874322222 22233333222   12499999999998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04109 Rab28 Rab28 subfamily

Probab=99.65  E-value=1e-14  Score=103.34  Aligned_cols=117  Identities=21%  Similarity=0.169  Sum_probs=73.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEe--eEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCE--MKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +|+++|.+|+|||||++.+++.......    ..|....  .....+..  ...+.+|||||...           +...
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~----~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~l   66 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEGFGKSY----KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGKM   66 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHHH
Confidence            6899999999999999999976532211    1222222  22233312  34678999999753           2233


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK-KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+...+|++++|+|+++.-+... ..+++.+.+.... ....|+++|.||+|+...
T Consensus        67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~  124 (215)
T cd04109          67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN  124 (215)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence            3345678899999999974433332 2345555554432 112378999999998744

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04125 RabA_like RabA-like subfamily

Probab=99.65  E-value=6.8e-15  Score=102.13  Aligned_cols=118  Identities=18%  Similarity=0.224  Sum_probs=73.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++.+++.........+.+  .......+... ....+.+|||||...           +.....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~g~~~-----------~~~~~~   67 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIG--VDFKIKTVYIENKIIKLQIWDTNGQER-----------FRSLNN   67 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEECCCcHH-----------HHhhHH
Confidence            3689999999999999999997764322122211  22222233331 123567899999753           222334


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++|++++|+|++++-+... ..++..+.......  .|++++.||+|+...
T Consensus        68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~  120 (188)
T cd04125          68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN  120 (188)
T ss_pred             HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc
Confidence            56678999999999974432222 23334444433222  589999999998754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=99.64  E-value=6.4e-15  Score=103.12  Aligned_cols=127  Identities=17%  Similarity=0.103  Sum_probs=74.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|.+|+|||||++.+++.......  .+..+.........+ .+  ..+.++||||...+...   ...+.....
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~--~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~   74 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY--IPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT---AGQEWMDPR   74 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCccc--CCccccccceeEEEE-CCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence            37899999999999999999976542221  111111111122223 33  45779999998754321   222222222


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG-KKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+|++++.+... ..+.+.+.+... .....|+++|.||+|+...
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~  131 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH  131 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence            234578899999999975433332 233344444331 0122599999999998654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04151 Arl1 Arl1 subfamily

Probab=99.64  E-value=6.5e-15  Score=99.41  Aligned_cols=113  Identities=16%  Similarity=0.129  Sum_probs=71.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|++|+|||||+++++....... .    .|.........+ .+..+.++||||...           +...+..+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTT-I----PTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCc-C----CccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence            478999999999999999976543211 1    122222333444 567899999999974           23344456


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      ...++++++|+|+++..+...  ..+++...+..  ....|+++|+||+|+.+.
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGT--AKEELHAMLEEEELKGAVLLVFANKQDMPGA  115 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence            678999999999874322111  11222222211  123599999999998754

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04157 Arl6 Arl6 subfamily

Probab=99.64  E-value=8.5e-15  Score=98.97  Aligned_cols=117  Identities=12%  Similarity=0.072  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|++|+|||||++.+++.........   .|.......... .+..+.++||||...           +...+..+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence            478999999999999999998642211111   111122222333 567889999999874           22333345


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG-KKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~tk~D~~~~  152 (170)
                      +..++++++|+|+++..+... ...++.+.+... .....|+++|+||+|+...
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA  119 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence            678899999999975433221 222333322110 0123599999999998754

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PLN03118 Rab family protein; Provisional

Probab=99.64  E-value=1.9e-14  Score=101.71  Aligned_cols=127  Identities=14%  Similarity=0.098  Sum_probs=76.0

Q ss_pred             CCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHH
Q 046239           12 PTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVG   90 (170)
Q Consensus        12 ~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~   90 (170)
                      ..+......+|+++|++|+|||||++++++...... ...  .+.......+.+. ....+.++||||...+        
T Consensus         7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------   75 (211)
T PLN03118          7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDL-APT--IGVDFKIKQLTVGGKRLKLTIWDTAGQERF--------   75 (211)
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCC--ceeEEEEEEEEECCEEEEEEEEECCCchhh--------
Confidence            344455568999999999999999999997654211 111  1122222233331 1246789999998753        


Q ss_pred             HHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           91 KEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         ......+...+|++++|+|.++..+.... ..+.............|+++|.||+|+...
T Consensus        76 ---~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~  135 (211)
T PLN03118         76 ---RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE  135 (211)
T ss_pred             ---HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence               22223455678999999999744333322 112222222222222488999999998644

>cd04158 ARD1 ARD1 subfamily

Probab=99.64  E-value=1.1e-14  Score=99.41  Aligned_cols=113  Identities=19%  Similarity=0.129  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|.+|+|||||++++++.....     ...|.........+ .+..+.++||||...+           ...+...
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-----PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence            47899999999999999999864311     12232233333444 5678999999998742           2233344


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      ...+|++++|+|+++.-+..  ....++.+.+...  ...|+++|.||+|+...
T Consensus        64 ~~~ad~ii~V~D~s~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  115 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRVS--EAHSELAKLLTEKELRDALLLIFANKQDVAGA  115 (169)
T ss_pred             hccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence            57789999999997432222  2233444443221  12589999999998644

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04127 Rab27A Rab27a subfamily

Probab=99.64  E-value=1.5e-14  Score=99.56  Aligned_cols=120  Identities=16%  Similarity=0.065  Sum_probs=73.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-----------CCceEEEEeCCCCCCCCCCch
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-----------DGQVVNVIDTPGLFDSSAGSE   87 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~l~DtpG~~~~~~~~~   87 (170)
                      ..+|+++|++|+|||||++.+++.........+.+..  .......+.           ....+.+|||||...      
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------   75 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGID--FREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------   75 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceE--EEEEEEEEcCccccccccCCCEEEEEEEeCCChHH------
Confidence            3689999999999999999998765422211111111  111112110           235688999999653      


Q ss_pred             HHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           88 FVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                           +.........++|++++|+|+++..+..+ ..++..+..... ....|+++|.||+|+...
T Consensus        76 -----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~  135 (180)
T cd04127          76 -----FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQ  135 (180)
T ss_pred             -----HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhc
Confidence                 33344456678899999999974333332 233333333211 112489999999998654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.64  E-value=7.8e-15  Score=98.91  Aligned_cols=114  Identities=16%  Similarity=0.118  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|.+|+|||||++++++.... ...    .+.........+ ....+.+||+||...+           .......
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~----~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTI----PTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCC----CCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence            4899999999999999999987631 111    122222333444 5678999999998752           2233345


Q ss_pred             cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+|++++|+|+.+.-+... ...+..+..... ....|++++.||+|....
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~  115 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA  115 (158)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc
Confidence            567799999999974311111 122222222111 123599999999998765

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.64  E-value=2.1e-14  Score=99.23  Aligned_cols=117  Identities=13%  Similarity=0.102  Sum_probs=75.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+|+++|++|+|||||++.+........ .    .|.......... .+..+.++||||...           +...
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-~----~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~   77 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTT-I----PTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPL   77 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-C----CccccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence            3457899999999999999999965433211 1    122222333444 567899999999863           3334


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      +..+..++|++++|+|+++.-+..  ...+++.+.+...  ...|+++|.||.|+.+.
T Consensus        78 ~~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~  133 (182)
T PTZ00133         78 WRHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDELRDAVLLVFANKQDLPNA  133 (182)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence            445677899999999997432211  1223344433221  23589999999997654

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=5e-15  Score=100.29  Aligned_cols=123  Identities=14%  Similarity=0.111  Sum_probs=90.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ..-.++|+|+|.+|+|||.|+..+++.........+.+..........+- ....+.+|||.|...           ++.
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~g-k~iKlQIWDTAGQER-----------Frt   73 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDG-KTIKLQIWDTAGQER-----------FRT   73 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecc-eEEEEEeeeccccHH-----------Hhh
Confidence            34457899999999999999999998876655555555555544444432 445789999999974           456


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+++++|++|+|+|+++.-+... .+++.++.......+  |.++|.||+|+.+.
T Consensus        74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~  129 (205)
T KOG0084|consen   74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK  129 (205)
T ss_pred             hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh
Confidence            66678899999999999985444333 355666666655443  89999999998765

>cd04169 RF3 RF3 subfamily

Probab=99.64  E-value=1.5e-14  Score=105.44  Aligned_cols=118  Identities=17%  Similarity=0.182  Sum_probs=78.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccc--cC------------------CCCceeEEEeeEEEEeeCCceEEEEeCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--SA------------------GSSGVTITCEMKTTVLKDGQVVNVIDTPG   78 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~--~~------------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG   78 (170)
                      .++|+++|+.|+|||||+++|+.......  +.                  ...+.+.......+.+ .+..+.++||||
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG   80 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG   80 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence            36899999999999999999974321100  00                  0112333344456666 788999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +.++.       .+.    ......+|++++|+++..+.......+++.....   +  .|+++++||+|....+
T Consensus        81 ~~df~-------~~~----~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~---~--~P~iivvNK~D~~~a~  139 (267)
T cd04169          81 HEDFS-------EDT----YRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR---G--IPIITFINKLDREGRD  139 (267)
T ss_pred             chHHH-------HHH----HHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc---C--CCEEEEEECCccCCCC
Confidence            97531       112    2234567999999999877666555555444331   2  4899999999987663

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.64  E-value=1.8e-14  Score=114.85  Aligned_cols=128  Identities=20%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ....++++++|..++|||||+++|.+.......  ..+.|.......+.+..+..+.+|||||+.+|.           .
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----------~  150 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----------S  150 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECCCCcchh-----------h
Confidence            345689999999999999999999986543322  224555555555555233489999999998642           2


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHh
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL  161 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~  161 (170)
                      +.......+|++++|++++++...+..+.+..+...   .  .|+++++||+|+...+.+.+.+.+
T Consensus       151 ~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~---~--vPiIVviNKiDl~~~~~e~v~~~L  211 (587)
T TIGR00487       151 MRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA---N--VPIIVAINKIDKPEANPDRVKQEL  211 (587)
T ss_pred             HHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcccccCCHHHHHHHH
Confidence            222455778999999999877766666555543322   2  489999999998765333444443

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04112 Rab26 Rab26 subfamily

Probab=99.64  E-value=1e-14  Score=101.54  Aligned_cols=117  Identities=15%  Similarity=0.199  Sum_probs=71.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccC-CCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|++|+|||||++.+++........ .+.+.+....  ...+. ....+.||||||...           +.....
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~   68 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNK--VVTVDGVKVKLQIWDTAGQER-----------FRSVTH   68 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEE--EEEECCEEEEEEEEeCCCcHH-----------HHHhhH
Confidence            68999999999999999998765422111 1111111111  12220 124678999999753           222333


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|+++..+..+ ..++..+.+.....  .|+++|.||+|+...
T Consensus        69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~  121 (191)
T cd04112          69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGE  121 (191)
T ss_pred             HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhc
Confidence            45677899999999974433222 33445555543222  499999999998643

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.64  E-value=1.1e-14  Score=98.34  Aligned_cols=114  Identities=13%  Similarity=0.109  Sum_probs=71.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|++|+|||||++.+++...... .    .|...............+.++||||...           +...+...
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-I----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-c----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence            478999999999999999998764321 1    1211222233332456899999999863           22333345


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      ...+|++++|+|+.+..+..  ....++.+.+...  ...|+++|.||+|....
T Consensus        65 ~~~~~~iv~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  116 (160)
T cd04156          65 LENTDGLVYVVDSSDEARLD--ESQKELKHILKNEHIKGVPVVLLANKQDLPGA  116 (160)
T ss_pred             hccCCEEEEEEECCcHHHHH--HHHHHHHHHHhchhhcCCCEEEEEECcccccC
Confidence            66789999999997443222  1222333332211  23599999999998643

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.64  E-value=1.8e-14  Score=97.52  Aligned_cols=113  Identities=15%  Similarity=0.127  Sum_probs=71.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|.+|+|||||++.+........ .    .|.......+.. ....+.+|||||...           +...+..+
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~~~-~----pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~   64 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIVTT-I----PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY   64 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCccc-C----CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence            689999999999999999965433211 1    111122223333 567899999999863           33344456


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      +.++|++++|+|+++..+..+  ..+++.+.+...  ...|++++.||+|+.+.
T Consensus        65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  116 (159)
T cd04150          65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA  116 (159)
T ss_pred             hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence            788999999999974322221  223333333211  12599999999998654

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04114 Rab30 Rab30 subfamily

Probab=99.64  E-value=9.9e-15  Score=99.40  Aligned_cols=119  Identities=16%  Similarity=0.107  Sum_probs=73.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+++++|++|+|||||++.+++.........  ..+.......+.+ .+  ..+.++|+||...           +..
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~   71 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA--TIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRS   71 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence            457899999999999999999986543222111  1111222222333 33  3577899999764           222


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+...+|++++|+|+.+..+... ..++..+.......  .|+++|.||+|+...
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~  127 (169)
T cd04114          72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER  127 (169)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc
Confidence            22345677899999999874432221 23344444433323  488999999998654

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.64  E-value=2.4e-14  Score=102.55  Aligned_cols=88  Identities=23%  Similarity=0.348  Sum_probs=58.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +++++|++|+|||||+|+|+|......  .....|..+......+ .+..+.++||||+.+..........++.    ..
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~l----~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQVI----AV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHHH----Hh
Confidence            689999999999999999999764221  1223333333444445 6788999999998764322222222332    34


Q ss_pred             cCCccEEEEEEeCCC
Q 046239          101 KGGIHAVLVVFSARN  115 (170)
Q Consensus       101 ~~~~~~il~v~~~~~  115 (170)
                      ..++|++++|+|+.+
T Consensus        75 ~~~ad~il~V~D~t~   89 (233)
T cd01896          75 ARTADLILMVLDATK   89 (233)
T ss_pred             hccCCEEEEEecCCc
Confidence            567899999999863

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.63  E-value=1.2e-14  Score=102.08  Aligned_cols=126  Identities=17%  Similarity=0.189  Sum_probs=74.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe---eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL---KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +.|+++|++|+|||||++.|++......   ..+.+  ........   ..+..+.++|+||+..+           ...
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t---~~s~~--~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----------~~~   64 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKYRST---VTSIE--PNVATFILNSEGKGKKFRLVDVPGHPKL-----------RDK   64 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCCCc---cCcEe--ecceEEEeecCCCCceEEEEECCCCHHH-----------HHH
Confidence            3689999999999999999997643221   11111  11111111   13567999999999742           222


Q ss_pred             HHhccCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccceEEEEEEcCCCCCCCh-hhHHHHhh
Q 046239           97 IGLAKGGI-HAVLVVFSARNRFSQEEEAAVHRLPTLFGK----KIFDYMIVVFTGGDYLEDNE-KTLEDYLG  162 (170)
Q Consensus        97 ~~~~~~~~-~~il~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~tk~D~~~~~~-~~~~~~~~  162 (170)
                      +...+... +++++|+|+.+.. .......+++.+.+..    ....|++++.||+|+..... +.+++.++
T Consensus        65 ~~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le  135 (203)
T cd04105          65 LLETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLE  135 (203)
T ss_pred             HHHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHH
Confidence            22334455 9999999997432 2222333333332211    12359999999999876532 33444443

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.63  E-value=1e-14  Score=98.84  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCc-ccccc-CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRK-AFKAS-AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~-~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|++|+|||||++++.... .+... ....+.................+.+|||||...           +..+..
T Consensus         2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~   70 (164)
T cd04101           2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YSDMVS   70 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HHHHHH
Confidence            68999999999999999998531 12111 111111111111111111346788999999742           223334


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|+++..+... ..+++.+.+..   ...|+++|.||+|+...
T Consensus        71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~  122 (164)
T cd04101          71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK  122 (164)
T ss_pred             HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence            45678899999999974422222 23333333321   22599999999998654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04120 Rab12 Rab12 subfamily

Probab=99.63  E-value=9.5e-15  Score=102.45  Aligned_cols=116  Identities=16%  Similarity=0.216  Sum_probs=75.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .|+++|..|+|||||++.++..........+  .+.......+.+ .+  ..+.+|||+|...           +..++.
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~T--i~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSG--VGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCc--ceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence            5889999999999999999865432211111  112222233343 33  5678999999874           334445


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .++.++|++++|+|++++-+... ..+++.+.+.....  .|+++|.||+|+...
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~  120 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD  120 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence            56788999999999985544443 23344444432222  599999999997644

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04136 Rap_like Rap-like subfamily

Probab=99.63  E-value=9.6e-15  Score=98.81  Aligned_cols=117  Identities=19%  Similarity=0.162  Sum_probs=70.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|.+|+|||||++.+++.........+   +.......... .+  ..+.+|||||...+.           ...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPT---IEDSYRKQIEV-DGQQCMLEILDTAGTEQFT-----------AMR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCc---hhhhEEEEEEE-CCEEEEEEEEECCCccccc-----------hHH
Confidence            58999999999999999999875432211111   11111112222 22  356789999987532           222


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...+|++++|+++++.-+..+ ..+++.+.+... ....|+++|.||+|+...
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  121 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDE  121 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence            334567899999999974433222 233444444322 123599999999997653

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>smart00053 DYNc Dynamin, GTPase

Probab=99.63  E-value=4.4e-14  Score=100.95  Aligned_cols=141  Identities=16%  Similarity=0.153  Sum_probs=87.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcccc--ccCCCCceeEE---------E----------------------------
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFK--ASAGSSGVTIT---------C----------------------------   58 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~--~~~~~~~~t~~---------~----------------------------   58 (170)
                      .-+.++++|++|+||||++++|+|.....  .+..+.-.+.-         .                            
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~  104 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT  104 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence            44689999999999999999999974211  11111000000         0                            


Q ss_pred             ----------eeEEEEeeCCceEEEEeCCCCCCCC--CCchHHHHHHHHHHHhccCC-ccEEEEEEeCCCCCCHHH-HHH
Q 046239           59 ----------EMKTTVLKDGQVVNVIDTPGLFDSS--AGSEFVGKEIVKCIGLAKGG-IHAVLVVFSARNRFSQEE-EAA  124 (170)
Q Consensus        59 ----------~~~~~~~~~~~~~~l~DtpG~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~il~v~~~~~~~~~~~-~~~  124 (170)
                                -.-.+..+....+.++||||+....  .........+..+...+..+ .+++++|+++...+...+ .++
T Consensus       105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i  184 (240)
T smart00053      105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL  184 (240)
T ss_pred             CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence                      0011112233679999999997432  11233445555655555553 458899999876677666 455


Q ss_pred             HHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhhc
Q 046239          125 VHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHE  164 (170)
Q Consensus       125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~  164 (170)
                      .+++...     ..++++|+||+|.++.. .++.+.++++
T Consensus       185 a~~ld~~-----~~rti~ViTK~D~~~~~-~~~~~~~~~~  218 (240)
T smart00053      185 AKEVDPQ-----GERTIGVITKLDLMDEG-TDARDILENK  218 (240)
T ss_pred             HHHHHHc-----CCcEEEEEECCCCCCcc-HHHHHHHhCC
Confidence            5555443     25999999999998764 2366666653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PLN03110 Rab GTPase; Provisional

Probab=99.63  E-value=2.4e-14  Score=101.55  Aligned_cols=120  Identities=17%  Similarity=0.135  Sum_probs=75.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ...+|+++|++|+|||||++.+++.........+.+.  ......+.+. ....+.+|||||...           +...
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~--~~~~~~v~~~~~~~~l~l~Dt~G~~~-----------~~~~   77 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGV--EFATRTLQVEGKTVKAQIWDTAGQER-----------YRAI   77 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeE--EEEEEEEEECCEEEEEEEEECCCcHH-----------HHHH
Confidence            4478999999999999999999986643222222111  1222223331 124788999999753           3334


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+...++++++|+|+++..+... ..+++.+.+.....  .|+++|.||+|+...
T Consensus        78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~  132 (216)
T PLN03110         78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL  132 (216)
T ss_pred             HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc
Confidence            4456678899999999974433332 23444444433222  489999999997543

>cd01893 Miro1 Miro1 subfamily

Probab=99.63  E-value=8.7e-15  Score=99.62  Aligned_cols=114  Identities=17%  Similarity=0.150  Sum_probs=71.0

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCC-CceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGS-SGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +++++|.+|+|||||++.+.+.......... ...+..   ..+.. ....+.+|||||.....           ..+..
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~~~   66 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIP---ADVTP-ERVPTTIVDTSSRPQDR-----------ANLAA   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEee---eeecC-CeEEEEEEeCCCchhhh-----------HHHhh
Confidence            6899999999999999999876543221111 111111   11111 34578899999987421           11222


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++++|++++++.+...  ..+++.+.... .  ..|+++|.||+|+...
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~~  118 (166)
T cd01893          67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRDG  118 (166)
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhcccc
Confidence            3467899999999874433333  23444454432 2  3599999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.63  E-value=8.7e-15  Score=107.04  Aligned_cols=115  Identities=23%  Similarity=0.237  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccc--cCC--------------CCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKA--SAG--------------SSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      +|+++|++|+|||||+++|++......  +..              ..+.+.........+ .+..+.++||||+.++  
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f--   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF--   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence            489999999999999999975321110  000              012223333445555 6778999999999742  


Q ss_pred             CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                               ..........+|++++|+++..+........++.+...   +  .|.++++||+|....
T Consensus        78 ---------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~---~--~p~iivvNK~D~~~~  131 (268)
T cd04170          78 ---------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA---G--IPRIIFINKMDRERA  131 (268)
T ss_pred             ---------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCccCCC
Confidence                     22222344567999999999877666666666655442   2  489999999998866

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK12736 elongation factor Tu; Reviewed

Probab=99.63  E-value=2.9e-15  Score=114.88  Aligned_cols=121  Identities=17%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD   81 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (170)
                      .++..+|+++|..++|||||+++|++.....              ......+.|.......+.. .+..+.++||||+.+
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~   87 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence            5667899999999999999999998742111              0112345555544444433 567889999999753


Q ss_pred             CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                                 +..........+|++++|+|+.++....+.+.+..+...   +. .++++++||+|+.+.
T Consensus        88 -----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~---g~-~~~IvviNK~D~~~~  143 (394)
T PRK12736         88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV---GV-PYLVVFLNKVDLVDD  143 (394)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc---CC-CEEEEEEEecCCcch
Confidence                       222223344678999999999877878877777766553   21 247889999998754

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.63  E-value=6.8e-16  Score=99.41  Aligned_cols=116  Identities=20%  Similarity=0.185  Sum_probs=67.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCcccc--ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFK--ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+|+|+.|+|||||+++|++.....  ......+.+.......... ....+.++|++|...+.....           
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~-----------   68 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQ-----------   68 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSH-----------
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccccc-----------
Confidence            68999999999999999999877641  1111222222222222211 233478999999965211111           


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      ....++|++++|+|+++..+... .+++.++..........|+++|.||.|
T Consensus        69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            11345699999999984433333 334555555543223359999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.63  E-value=6.8e-15  Score=100.23  Aligned_cols=114  Identities=18%  Similarity=0.149  Sum_probs=70.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe---eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL---KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      +|+++|++|+|||||++.++.........    .|.........+   .....+.+|||||...+..           ..
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~   66 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-----------LR   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-----------cc
Confidence            78999999999999999998544321111    222222222111   1235688999999875321           11


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+|.++..+... ..+++.+.....   ..|+++|.||+|+...
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~  119 (166)
T cd00877          67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR  119 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc
Confidence            124567899999999974433322 234444544332   3599999999998744

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.63  E-value=1.9e-14  Score=97.45  Aligned_cols=118  Identities=21%  Similarity=0.163  Sum_probs=71.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+|+++|++|+|||||++++++...........   .......... .+  ..+.++||||..++           ...
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~   66 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI---EDSYTKQCEI-DGQWAILDILDTAGQEEF-----------SAM   66 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc---cceEEEEEEE-CCEEEEEEEEECCCCcch-----------hHH
Confidence            4689999999999999999998765322111111   1111111222 23  35778999998753           122


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......+|++++|+++++.-+... ..++..+...... ...|++++.||+|+...
T Consensus        67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~  122 (164)
T cd04145          67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ  122 (164)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc
Confidence            2234466799999999974332222 2333334333211 12499999999998654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.62  E-value=1.6e-14  Score=102.59  Aligned_cols=119  Identities=13%  Similarity=0.024  Sum_probs=75.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ....+|+++|.+|+|||||++.++..........+.+.+..  ...+... ....+.+|||+|...+           ..
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~   77 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKF-----------GG   77 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE--EEEEEECCeEEEEEEEECCCchhh-----------hh
Confidence            56689999999999999999987755432221222222211  1122221 2357889999998753           23


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ....++.+++++++|+|.+++.+... ..+++.+.+.. .  ..|+++|.||+|+..
T Consensus        78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~~  131 (219)
T PLN03071         78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E--NIPIVLCGNKVDVKN  131 (219)
T ss_pred             hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-C--CCcEEEEEEchhhhh
Confidence            33345678899999999985543332 23444444432 2  249999999999753

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.62  E-value=1.5e-14  Score=97.58  Aligned_cols=117  Identities=20%  Similarity=0.175  Sum_probs=70.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|++|+|||||++++++...........+   ......... .+  ..+.+|||||...+           ....
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~l~   66 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE---DSYRKQVVI-DGETCLLDILDTAGQEEY-----------SAMR   66 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcch---heEEEEEEE-CCEEEEEEEEECCCCcch-----------HHHH
Confidence            5799999999999999999997653222111111   111122222 22  34678999998642           2233


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...++++++|+++++.-+..+ ..++..+.+... ....|+++|.||+|+...
T Consensus        67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~  121 (162)
T cd04138          67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR  121 (162)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence            345567899999999874332222 223344444321 123599999999998753

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.62  E-value=2e-14  Score=99.45  Aligned_cols=119  Identities=14%  Similarity=0.132  Sum_probs=72.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+|+++|.+|+|||||++.+++...... ..+.+.+.  .......  ..+..+.+|||||...           +...
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~   68 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNT--EKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL   68 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccce--eEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence            46899999999999999999987653221 11111111  1111111  1345789999999753           2333


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +..+...+|++++|+|+++.-+..+ ...+..+..... ....|+++|+||+|+...
T Consensus        69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~  124 (183)
T cd04152          69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNA  124 (183)
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcccc
Confidence            4445678899999999874322221 122233333221 123599999999998643

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.62  E-value=6.2e-15  Score=113.19  Aligned_cols=121  Identities=19%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF   80 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   80 (170)
                      ..++..+|+++|..++|||||+++|++.....              ......+.|.......+.. .+..+.++||||+.
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~   86 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH
Confidence            44677899999999999999999998621100              1112345555544444444 56688999999985


Q ss_pred             CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239           81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED  152 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~  152 (170)
                      +           +..........+|++++|+++.++...+..+.+..+... +    .| +++++||+|+.+.
T Consensus        87 ~-----------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~~~  143 (396)
T PRK12735         87 D-----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD  143 (396)
T ss_pred             H-----------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEEEecCCcch
Confidence            2           333333455688999999999877777776666655442 2    25 4568999998753

>PLN03127 Elongation factor Tu; Provisional

Probab=99.62  E-value=1.3e-14  Score=112.54  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=85.3

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      +..++..+|+++|..++|||||+++|++.....              ......+.|.......+.. .+..+.++||||+
T Consensus        56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh  134 (447)
T PLN03127         56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGH  134 (447)
T ss_pred             hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCc
Confidence            446778899999999999999999998431100              0122245666555555544 5678899999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~  152 (170)
                      .+       ....+.    .....+|++++|+|+.++...++.+.+..+...-     .| +++++||+|+++.
T Consensus       135 ~~-------f~~~~~----~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g-----ip~iIvviNKiDlv~~  192 (447)
T PLN03127        135 AD-------YVKNMI----TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG-----VPSLVVFLNKVDVVDD  192 (447)
T ss_pred             cc-------hHHHHH----HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC-----CCeEEEEEEeeccCCH
Confidence            74       222222    2334689999999998788888877777766542     25 6789999998864

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.62  E-value=2.5e-14  Score=116.77  Aligned_cols=118  Identities=16%  Similarity=0.159  Sum_probs=86.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ....++|+++|..++|||||+++|.+.......  ..+.|.....+.+.+ .+..+.||||||+.+|.           .
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e--~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~  352 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE--AGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------A  352 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc--cCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------h
Confidence            456789999999999999999999876543221  234555555566666 57789999999998752           1


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +.......+|++++|++++++...+....+......   .  .|+++++||+|+...
T Consensus       353 m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~---~--vPiIVviNKiDl~~a  404 (787)
T PRK05306        353 MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA---G--VPIIVAINKIDKPGA  404 (787)
T ss_pred             HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc---C--CcEEEEEECcccccc
Confidence            222345667999999999877777766666544432   2  489999999998765

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.62  E-value=2.5e-14  Score=105.61  Aligned_cols=131  Identities=21%  Similarity=0.318  Sum_probs=90.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccc----cCCC--CceeEEEeeEEEEeeC---CceEEEEeCCCCCCCCCCch
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA----SAGS--SGVTITCEMKTTVLKD---GQVVNVIDTPGLFDSSAGSE   87 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~----~~~~--~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~   87 (170)
                      +-.++|+++|++|+|||||+|+|++......    +...  ...+.........+..   ...+.++||||++++.....
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4567999999999999999999998732222    1111  1233334444433312   34688999999999766543


Q ss_pred             HH-------HHHHHHHHH----------hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCC
Q 046239           88 FV-------GKEIVKCIG----------LAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDY  149 (170)
Q Consensus        88 ~~-------~~~~~~~~~----------~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~  149 (170)
                      .|       ..++..++.          ....++|++||.+.++ +++...|..++..+.+..      ++|-|+.|+|.
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~KaD~  174 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAKADT  174 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------Ceeeeeecccc
Confidence            22       222222221          1245789999999984 789999999888888863      99999999999


Q ss_pred             CCCC
Q 046239          150 LEDN  153 (170)
Q Consensus       150 ~~~~  153 (170)
                      +...
T Consensus       175 lT~~  178 (373)
T COG5019         175 LTDD  178 (373)
T ss_pred             CCHH
Confidence            9874

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.61  E-value=1.8e-14  Score=98.55  Aligned_cols=118  Identities=18%  Similarity=0.111  Sum_probs=70.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +|+++|.+|+|||||++.+++.........+.+  ........... ....+.+|||||...           +......
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~~   68 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG--VDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIAST   68 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhHHH
Confidence            689999999999999999998654222111111  11111222221 134688999999864           2223344


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++++|+|+.+..+... ..+++.+.+..... ..|+++|.||.|+...
T Consensus        69 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~~~  121 (170)
T cd04108          69 YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLSSP  121 (170)
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcCcc
Confidence            5678999999999974322221 23333332221111 1368999999997543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04117 Rab15 Rab15 subfamily

Probab=99.61  E-value=2.6e-14  Score=96.83  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=71.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|++|+|||||++.+++...........+  .......... .+  ..+.+|||+|...+           .....
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~~~   67 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG--VDFKMKTIEV-DGIKVRIQIWDTAGQERY-----------QTITK   67 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEE-CCEEEEEEEEeCCCcHhH-----------HhhHH
Confidence            689999999999999999887654322111111  1122223333 22  35779999997642           22233


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+...+|++++|+|++++-+... ..+++.+......  ..|+++|.||.|+...
T Consensus        68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~  120 (161)
T cd04117          68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQK  120 (161)
T ss_pred             HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence            45678899999999974433222 2333434333222  2489999999997654

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.61  E-value=2.2e-14  Score=99.39  Aligned_cols=114  Identities=15%  Similarity=0.082  Sum_probs=70.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEe-eEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCE-MKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      +|+++|++|+|||||++.+++........    .+.... .......  ....+.+|||||...           +....
T Consensus         2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~----~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYV----PTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRLR   66 (187)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCCCCCC----CeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHHH
Confidence            78999999999999999999765432211    111111 1122221  123578999999764           22223


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....++|++++|+|.++..+..+.  .++..+... ..  ..|+++|.||+|+...
T Consensus        67 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~--~~piilv~nK~Dl~~~  120 (187)
T cd04132          67 PLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CP--GTPIMLVGLKTDLRKD  120 (187)
T ss_pred             HHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhhhC
Confidence            3356789999999999754333332  233333322 12  2499999999998653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.61  E-value=1.9e-14  Score=111.60  Aligned_cols=122  Identities=20%  Similarity=0.244  Sum_probs=84.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc-----------------------------ccCCCCceeEEEeeEEEEe
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK-----------------------------ASAGSSGVTITCEMKTTVL   65 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~   65 (170)
                      +.++..+|+++|+.++|||||+++|++.....                             ......+.|.......+.+
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~   81 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET   81 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence            45677899999999999999999998432110                             0112356666666666666


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEE
Q 046239           66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN--RFSQEEEAAVHRLPTLFGKKIFDYMIVV  143 (170)
Q Consensus        66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (170)
                       .+..+.++||||+.++.       ..+.    .....+|++++|+|+.+  .+.......+..+.. ++.   .+++++
T Consensus        82 -~~~~i~liDtpG~~~~~-------~~~~----~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivv  145 (425)
T PRK12317         82 -DKYYFTIVDCPGHRDFV-------KNMI----TGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVA  145 (425)
T ss_pred             -CCeEEEEEECCCcccch-------hhHh----hchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEE
Confidence             67889999999986531       1111    23467899999999986  555555555554443 221   379999


Q ss_pred             EEcCCCCCC
Q 046239          144 FTGGDYLED  152 (170)
Q Consensus       144 ~tk~D~~~~  152 (170)
                      +||+|+...
T Consensus       146 iNK~Dl~~~  154 (425)
T PRK12317        146 INKMDAVNY  154 (425)
T ss_pred             EEccccccc
Confidence            999998764

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.61  E-value=2.7e-14  Score=116.96  Aligned_cols=124  Identities=22%  Similarity=0.244  Sum_probs=81.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch-HHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-FVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~   97 (170)
                      ..+|+++|.+|+|||||+|+|+|..... + ..++.|.......+.+ .+..+.++||||+++...... ....+.....
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v-g-n~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRV-G-NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcc-C-CCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence            4689999999999999999999976532 2 2356666655555655 677899999999997643211 1111211111


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+|+++ ... +......+.+.   +  .|+++++||+|..+.
T Consensus        80 ~l~~~~aD~vI~VvDat~-ler-~l~l~~ql~e~---g--iPvIvVlNK~Dl~~~  127 (772)
T PRK09554         80 YILSGDADLLINVVDASN-LER-NLYLTLQLLEL---G--IPCIVALNMLDIAEK  127 (772)
T ss_pred             HHhccCCCEEEEEecCCc-chh-hHHHHHHHHHc---C--CCEEEEEEchhhhhc
Confidence            112457899999999973 322 22333334332   2  599999999998754

>cd04116 Rab9 Rab9 subfamily

Probab=99.61  E-value=2.6e-14  Score=97.49  Aligned_cols=133  Identities=17%  Similarity=0.078  Sum_probs=77.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ...+|+++|++|+|||||++.+++...........+  .......+.+. ....+.+|||||...           +...
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~   70 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEVDGHFVTLQIWDTAGQER-----------FRSL   70 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee--eEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHh
Confidence            447899999999999999999987654322221211  11112222221 224567899999753           2333


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC--hhhHHHHhhh
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN--EKTLEDYLGH  163 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~--~~~~~~~~~~  163 (170)
                      .......+|++++|++++++-+... ..+...+......  ....|+++|.||+|+....  .+.++++.++
T Consensus        71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  142 (170)
T cd04116          71 RTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE  142 (170)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH
Confidence            4445678899999999874432222 2233333332211  1124899999999986321  1345555443

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00157 Rho Rho (Ras homology) family

Probab=99.61  E-value=1.2e-14  Score=99.16  Aligned_cols=117  Identities=18%  Similarity=0.074  Sum_probs=71.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++++++.......... ...  ........ .....+.++||||+..+..           ...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~D~~g~~~~~~-----------~~~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPT-VFD--NYSATVTVDGKQVNLGLWDTAGQEEYDR-----------LRP   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eee--eeEEEEEECCEEEEEEEEeCCCcccccc-----------cch
Confidence            37899999999999999999987642221111 111  11111111 1234688999999886311           111


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .....+|++++|+|.++..+...  ..++..+.....   ..|+++|.||+|+....
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~  120 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDE  120 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhch
Confidence            23467899999999974322222  233444444322   35999999999988663

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.61  E-value=1.7e-14  Score=97.82  Aligned_cols=117  Identities=19%  Similarity=0.141  Sum_probs=69.5

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +|+++|++|+|||||++++++..........   ............ ....+.++||||...+.           .....
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----------~~~~~   67 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPT---IEDSYRKQIEIDGEVCLLDILDTAGQEEFS-----------AMRDQ   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcccCCc---hhhhEEEEEEECCEEEEEEEEECCCcccch-----------HHHHH
Confidence            7899999999999999999976542221111   111111122221 12457789999987531           12223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++++++|+++++.-+... ..+...+.+.... ...|+++|.||+|+...
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~  120 (164)
T smart00173       68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE  120 (164)
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence            4556799999999974322222 2223333333221 13599999999998654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04118 Rab24 Rab24 subfamily

Probab=99.61  E-value=2.2e-14  Score=99.97  Aligned_cols=114  Identities=21%  Similarity=0.197  Sum_probs=70.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEE--EeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTIT--CEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .+|+++|.+|+|||||++++++........   ..|..  .....+.. .+  ..+.+|||||...+           ..
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~   65 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPY---QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERY-----------EA   65 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCc---ccceeeEEEEEEEEE-CCEEEEEEEEECCCchhh-----------hh
Confidence            379999999999999999999765422111   11211  11122333 33  34569999998642           12


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .......++|++++|+|+++..+... ..+++.+...   ....|+++|.||+|+..
T Consensus        66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~  119 (193)
T cd04118          66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE  119 (193)
T ss_pred             hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence            22335668899999999974422222 2344444432   11259999999999764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd00876 Ras Ras family

Probab=99.60  E-value=3.1e-14  Score=95.84  Aligned_cols=116  Identities=22%  Similarity=0.184  Sum_probs=71.0

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|++|+|||||++++++..........   +.......... .  ...+.++|+||...           +.....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPT---IEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCC---hhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence            5899999999999999999976532221111   11112222222 2  24678999999864           222222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+++++|++.++..+..+ ..++..+.+.... ...|++++.||+|....
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~  119 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENE  119 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCccccc
Confidence            34556799999999874322222 2334444443321 23599999999998863

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>COG2262 HflX GTPases [General function prediction only]

Probab=99.60  E-value=3.2e-14  Score=106.40  Aligned_cols=137  Identities=23%  Similarity=0.205  Sum_probs=88.8

Q ss_pred             CCCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH
Q 046239           10 WKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV   89 (170)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~   89 (170)
                      .+..+....-+.|+++|.+++|||||+|+|++...+....  ...|-........++.+..+.+-||.||-+  .-+...
T Consensus       183 ~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~--LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~L  258 (411)
T COG2262         183 RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQ--LFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPL  258 (411)
T ss_pred             HhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeecccc--ccccccCceeEEEeCCCceEEEecCccCcc--cCChHH
Confidence            3445566677899999999999999999999887654321  112222223334454578999999999985  233333


Q ss_pred             HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ...|..-+. -...+|+++.|+|++++.-.... ...+.|.++--..  .|+++|+||.|++.+.
T Consensus       259 V~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~~  320 (411)
T COG2262         259 VEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLEDE  320 (411)
T ss_pred             HHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCch
Confidence            333333332 23678999999999865222222 3334444432122  5999999999998773

>PLN03108 Rab family protein; Provisional

Probab=99.60  E-value=6.1e-14  Score=99.08  Aligned_cols=119  Identities=13%  Similarity=0.104  Sum_probs=71.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..+|+++|++|+|||||++.+++...........+.+.  ......+. ....+.+|||+|...           +....
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~--~~~~i~~~~~~i~l~l~Dt~G~~~-----------~~~~~   72 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMITIDNKPIKLQIWDTAGQES-----------FRSIT   72 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceE--EEEEEEECCEEEEEEEEeCCCcHH-----------HHHHH
Confidence            47899999999999999999997654222111211111  11122221 123577999999753           22223


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+|+.+.-+... ..++..+......  ..|+++|.||+|+...
T Consensus        73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~  126 (210)
T PLN03108         73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHR  126 (210)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccc
Confidence            345567899999999974322222 1333333333222  2589999999998653

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.60  E-value=4.4e-14  Score=112.95  Aligned_cols=116  Identities=24%  Similarity=0.310  Sum_probs=82.8

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCcccc-ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +|+++|..++|||||+++|+|..... .+....+.|.......+.+ .+..+.++|+||+..           +......
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~~   69 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAIA   69 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHHh
Confidence            68999999999999999999854211 1122345666666556666 567899999999853           3333344


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...++|++++|+|++++...+..+.+..+.. ++  . .++++|+||+|+.+.
T Consensus        70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lg--i-~~iIVVlNK~Dlv~~  118 (581)
T TIGR00475        70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LG--I-PHTIVVITKADRVNE  118 (581)
T ss_pred             hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cC--C-CeEEEEEECCCCCCH
Confidence            5678899999999987776776666655543 22  1 249999999999865

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.60  E-value=2.7e-14  Score=103.49  Aligned_cols=136  Identities=18%  Similarity=0.143  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      .+++||-+++|||||+|+|+...+...  ...-+|....+....+.....+.+-|.||+.+.....+-.+.+|++-+.++
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa--~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVA--HYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCccc--ccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            478999999999999999998775222  122344445555555544566999999999998888888899999888776


Q ss_pred             cCCccEEEEEEeCCCC--CCHH-HH-HHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239          101 KGGIHAVLVVFSARNR--FSQE-EE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG  162 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~--~~~~-~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~  162 (170)
                          ..++||+|.+..  .++. +. ..+.++..+-.....+|.+||.||+|..+....-++++.+
T Consensus       276 ----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~  337 (366)
T KOG1489|consen  276 ----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAK  337 (366)
T ss_pred             ----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHH
Confidence                899999999733  1333 22 3333333332334556999999999987553222344443

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.60  E-value=5.8e-14  Score=96.21  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=73.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|..|+|||||++.+.+...........+.  .. ...... .+  ..+.++||||...+           ..+.
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~--~~-~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~l~   67 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIED--AY-KQQARI-DNEPALLDILDTAGQAEF-----------TAMR   67 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccc--eE-EEEEEE-CCEEEEEEEEeCCCchhh-----------HHHh
Confidence            58999999999999999998865542221111111  11 111222 22  45788999998742           3334


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...+|++++|++++++.+.... .+...+.+... ....|+++|.||+|+...
T Consensus        68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~  122 (172)
T cd04141          68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ  122 (172)
T ss_pred             HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc
Confidence            4456778999999999866555543 23344444321 123599999999997643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.59  E-value=1.4e-14  Score=97.95  Aligned_cols=115  Identities=19%  Similarity=0.238  Sum_probs=69.4

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|++|+|||||+|.|.|.....      ..+.     ...+ ...  .+|||||+....   ......+.    ..
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~-----~v~~-~~~--~~iDtpG~~~~~---~~~~~~~~----~~   61 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA------RKTQ-----AVEF-NDK--GDIDTPGEYFSH---PRWYHALI----TT   61 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC------ccce-----EEEE-CCC--CcccCCccccCC---HHHHHHHH----HH
Confidence            79999999999999999999864311      1111     1122 122  269999986432   11222222    23


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhh
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGH  163 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~  163 (170)
                      ..++|++++|+|+++..+....    ++.+. ..  ..|+++++||+|+.+.+...+.+++++
T Consensus        62 ~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~~~~~~~~~~~~  117 (158)
T PRK15467         62 LQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDADVAATRKLLLE  117 (158)
T ss_pred             HhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcccHHHHHHHHHH
Confidence            5678999999999744332222    22222 11  248999999999865543444555444

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.59  E-value=4.3e-14  Score=114.60  Aligned_cols=120  Identities=17%  Similarity=0.195  Sum_probs=82.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee---CCceEEEEeCCCCCCCCCCchHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK---DGQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      ....++|+++|..++|||||+++|++........  .+.|.....+...+.   .+..+.||||||+..           
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~--~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------  307 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEA--GGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------  307 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccC--CccccccceEEEEEEecCCceEEEEEECCcHHH-----------
Confidence            4566899999999999999999998765433211  223332233333331   247899999999864           


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +..........+|++++|++++++...+..+.+..+...   .  .|+++++||+|....+
T Consensus       308 F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~---~--iPiIVViNKiDl~~~~  363 (742)
T CHL00189        308 FSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA---N--VPIIVAINKIDKANAN  363 (742)
T ss_pred             HHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc---C--ceEEEEEECCCccccC
Confidence            233333455677999999999877777666666554332   2  4999999999987653

>cd04121 Rab40 Rab40 subfamily

Probab=99.59  E-value=5.7e-14  Score=97.60  Aligned_cols=117  Identities=17%  Similarity=0.137  Sum_probs=75.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+|+++|..|+|||||++.+...........  ..+.......+.. .+  ..+.+|||+|...           +..
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~--t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~   70 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGY--NMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCT   70 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--cceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence            347899999999999999999987533111111  1122222222333 23  5678999999964           233


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ....+...+|++++|+|++++.+... ..+++.+.+.. .  ..|+++|.||.|+..
T Consensus        71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~--~~piilVGNK~DL~~  124 (189)
T cd04121          71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P--GVPKILVGNRLHLAF  124 (189)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccchh
Confidence            34456678999999999985544443 34455554432 2  349999999999754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04175 Rap1 Rap1 subgroup

Probab=99.59  E-value=3.5e-14  Score=96.30  Aligned_cols=118  Identities=16%  Similarity=0.114  Sum_probs=69.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||+++++.........   +.+........... ....+.++||||...+           .....
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~   67 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYD---PTIEDSYRKQVEVDGQQCMLEILDTAGTEQF-----------TAMRD   67 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccC---CcchheEEEEEEECCEEEEEEEEECCCcccc-----------hhHHH
Confidence            579999999999999999988543211111   11111111223231 1335679999998753           22223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++|++++|++.++.-+..+ ..++..+.+... ....|+++|.||+|+...
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  121 (164)
T cd04175          68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE  121 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc
Confidence            34567799999999874333222 233344433221 122499999999998654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04111 Rab39 Rab39 subfamily

Probab=99.59  E-value=6.9e-14  Score=98.87  Aligned_cols=120  Identities=17%  Similarity=0.096  Sum_probs=72.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+|+++|++|+|||||++.+++........  +..+.......+.+..  ...+.++||||...           +...
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~--~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~   68 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD--PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSI   68 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--ceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHH
Confidence            3689999999999999999999765422211  1111111122222212  24678999999763           2233


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...++..+|++++|+|+++.-+..+ ..++..+.+.... ...++++|.||+|+...
T Consensus        69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~  124 (211)
T cd04111          69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ  124 (211)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc
Confidence            3445678899999999974432222 2333333333221 12468899999998654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.59  E-value=1.7e-14  Score=110.79  Aligned_cols=120  Identities=19%  Similarity=0.215  Sum_probs=84.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD   81 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (170)
                      .++..+|+++|..++|||||+++|++.....              ......+.|.......+.. .+..+.++||||+.+
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~   87 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHH
Confidence            4667899999999999999999998732110              1112345555554444443 466789999999852


Q ss_pred             CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceE-EEEEEcCCCCCC
Q 046239           82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM-IVVFTGGDYLED  152 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-ivv~tk~D~~~~  152 (170)
                                 +..........+|++++|+|+.++....+...+..+... +    .|. ++++||+|+...
T Consensus        88 -----------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~~  143 (396)
T PRK00049         88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD  143 (396)
T ss_pred             -----------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcch
Confidence                       333333456788999999999878888887777766653 1    365 468999999753

>PLN03126 Elongation factor Tu; Provisional

Probab=99.59  E-value=1.2e-14  Score=113.45  Aligned_cols=123  Identities=15%  Similarity=0.198  Sum_probs=85.5

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccc--------------cccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAF--------------KASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      ...++..+|+++|..++|||||+++|++....              .......+.|.......+.+ .+..+.++||||+
T Consensus        76 ~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh  154 (478)
T PLN03126         76 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGH  154 (478)
T ss_pred             hccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCH
Confidence            34677889999999999999999999852110              01122345555554444555 6778999999998


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+       ....+    ......+|++++|+|+.++...+..+.+..+... +.   +++++++||+|+...
T Consensus       155 ~~-------f~~~~----~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~~  212 (478)
T PLN03126        155 AD-------YVKNM----ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVDD  212 (478)
T ss_pred             HH-------HHHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccCH
Confidence            64       22233    3344577999999999888877777777655543 21   248889999998764

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.58  E-value=1.7e-14  Score=110.79  Aligned_cols=121  Identities=17%  Similarity=0.250  Sum_probs=81.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD   81 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (170)
                      .++..+|+++|..++|||||+++|++.....              ......+.|.......+.. .+..+.++||||+.+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~   87 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence            5677899999999999999999998531100              0111245555544444433 456789999999964


Q ss_pred             CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +       ...+    ......+|++++|+|+.++....+.+.+..+... +  . .++++++||+|+.+.
T Consensus        88 f-------~~~~----~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-g--i-~~iIvvvNK~Dl~~~  143 (394)
T TIGR00485        88 Y-------VKNM----ITGAAQMDGAILVVSATDGPMPQTREHILLARQV-G--V-PYIVVFLNKCDMVDD  143 (394)
T ss_pred             H-------HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C--C-CEEEEEEEecccCCH
Confidence            2       1222    2334577999999999877777777777766543 1  1 245678999998764

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04126 Rab20 Rab20 subfamily

Probab=99.58  E-value=5.4e-14  Score=99.80  Aligned_cols=113  Identities=21%  Similarity=0.127  Sum_probs=73.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|.+|+|||||++.+++...... .    .|.........+ ....+.+|||||...+.           .....
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-~----~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~-----------~l~~~   63 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-V----STVGGAFYLKQW-GPYNISIWDTAGREQFH-----------GLGSM   63 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCC-C----CccceEEEEEEe-eEEEEEEEeCCCcccch-----------hhHHH
Confidence            3689999999999999999987664321 1    122222232333 34578999999987532           12223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      +...+|++++|+|++++.+..+. .++..+.+....  ..|+++|.||+|+.+
T Consensus        64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~  114 (220)
T cd04126          64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTE  114 (220)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence            46788999999999855444332 233333332222  248999999999865

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.58  E-value=2.4e-14  Score=100.19  Aligned_cols=133  Identities=19%  Similarity=0.250  Sum_probs=92.7

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc-----CCCCceeEEEeeEEEEeeC---CceEEEEeCCCCCCCCCC
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTITCEMKTTVLKD---GQVVNVIDTPGLFDSSAG   85 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-----~~~~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~   85 (170)
                      ....-.++|++||++|.||||++|.|........+     ..+.+.|...........+   +..+.++||||++++...
T Consensus        41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN  120 (336)
T KOG1547|consen   41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN  120 (336)
T ss_pred             HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence            34455689999999999999999999865443321     1133344444444433322   245789999999998776


Q ss_pred             chHH-------HHHHHHHHH----------hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239           86 SEFV-------GKEIVKCIG----------LAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG  147 (170)
Q Consensus        86 ~~~~-------~~~~~~~~~----------~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (170)
                      .+.|       ..+..++++          ....++|+.+|.++++ +.+.+.|.++++.|.+..      +++-|+-|+
T Consensus       121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIaka  194 (336)
T KOG1547|consen  121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKA  194 (336)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeec
Confidence            6544       122222221          1245789999999985 778888999999999875      899999999


Q ss_pred             CCCCC
Q 046239          148 DYLED  152 (170)
Q Consensus       148 D~~~~  152 (170)
                      |.+.-
T Consensus       195 DtlTl  199 (336)
T KOG1547|consen  195 DTLTL  199 (336)
T ss_pred             ccccH
Confidence            98866

>PTZ00369 Ras-like protein; Provisional

Probab=99.58  E-value=5.2e-14  Score=97.83  Aligned_cols=120  Identities=22%  Similarity=0.171  Sum_probs=72.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +..+|+++|.+|+|||||++.+++.........+.+.+.   ....... ....+.+|||||..++.           ..
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~l   69 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY---RKQCVIDEETCLLDILDTAGQEEYS-----------AM   69 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE---EEEEEECCEEEEEEEEeCCCCccch-----------hh
Confidence            357999999999999999999997654222111111111   1112221 22357789999987632           22


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+...++++++|+|+++.-+..+ ..+.+.+.+.... ...|+++|.||+|+...
T Consensus        70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~  125 (189)
T PTZ00369         70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE  125 (189)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence            3335567899999999975433222 2334444443221 12489999999997543

>cd04131 Rnd Rnd subfamily

Probab=99.58  E-value=4.7e-14  Score=97.18  Aligned_cols=115  Identities=13%  Similarity=0.026  Sum_probs=73.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++.+++.........+.+  ... ...+... ....+.+|||+|...+           .....
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~--~~~-~~~~~~~~~~~~l~iwDt~G~~~~-----------~~~~~   67 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVF--ENY-TASFEIDEQRIELSLWDTSGSPYY-----------DNVRP   67 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceE--EEE-EEEEEECCEEEEEEEEECCCchhh-----------hhcch
Confidence            4799999999999999999987654222111111  111 1122221 2345789999998643           12222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ....++|++++|+|++++-+...  ..++..+.+...   ..|+++|.||+|+..
T Consensus        68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~  119 (178)
T cd04131          68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRT  119 (178)
T ss_pred             hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhc
Confidence            35678899999999985544443  245555555432   249999999999753

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.58  E-value=7.4e-14  Score=99.71  Aligned_cols=117  Identities=13%  Similarity=0.017  Sum_probs=74.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ...+|+++|.+|+|||+|++.+++.........+.+..  .. ..+.. .....+.||||+|...           +..+
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~--~~-~~i~~~~~~v~l~iwDTaG~e~-----------~~~~   77 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--YT-AGLETEEQRVELSLWDTSGSPY-----------YDNV   77 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeee--eE-EEEEECCEEEEEEEEeCCCchh-----------hHHH
Confidence            34689999999999999999998764322211111111  11 11222 1235688999999864           2233


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ...++.++|++++|+|+++.-+...  ..++..+.+...   ..|+++|.||+|+..
T Consensus        78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~  131 (232)
T cd04174          78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRT  131 (232)
T ss_pred             HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence            3346789999999999985544332  244555554332   248999999999753

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=1.9e-13  Score=91.89  Aligned_cols=132  Identities=16%  Similarity=0.219  Sum_probs=96.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccc-----cCCCC---ceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSS---GVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV   89 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-----~~~~~---~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~   89 (170)
                      ...+|++.|+.++||||+++.++.......     .....   ..|....+....+..+..+.+++|||+..        
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R--------   80 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER--------   80 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH--------
Confidence            356899999999999999999997663221     12222   36666777777764558999999999985        


Q ss_pred             HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh-hhHHHHhhhc
Q 046239           90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE-KTLEDYLGHE  164 (170)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-~~~~~~~~~~  164 (170)
                         +..++.....++..+++++|.+...+......++.+.....    .|++|.+||.|+.+..+ +.++++++..
T Consensus        81 ---F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~~  149 (187)
T COG2229          81 ---FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKLE  149 (187)
T ss_pred             ---HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHhc
Confidence               34444455677888888889876766666667776666532    49999999999987644 6788887763

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=5.9e-14  Score=104.28  Aligned_cols=131  Identities=20%  Similarity=0.237  Sum_probs=89.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccc-----cCCCCceeEEEeeEEEEeeC---CceEEEEeCCCCCCCCCCchH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTITCEMKTTVLKD---GQVVNVIDTPGLFDSSAGSEF   88 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~   88 (170)
                      +-.+.++++|++|.|||||||+|++......     .......+............   ..++.++||||++++-.....
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~   98 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC   98 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence            3458999999999999999999998743221     11111123333333333311   246889999999987554432


Q ss_pred             H-------HHHHHHHHHh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           89 V-------GKEIVKCIGL---------AKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        89 ~-------~~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      +       ..++..++..         ...++|+.||.+++. +++.+.|..+++.+....      ++|-|+.|+|.+.
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT  172 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLT  172 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCC
Confidence            2       3334444421         234789999999985 679999999888887764      9999999999998


Q ss_pred             CC
Q 046239          152 DN  153 (170)
Q Consensus       152 ~~  153 (170)
                      ..
T Consensus       173 ~~  174 (366)
T KOG2655|consen  173 KD  174 (366)
T ss_pred             HH
Confidence            84

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.58  E-value=9.4e-14  Score=97.33  Aligned_cols=119  Identities=17%  Similarity=0.168  Sum_probs=75.2

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee------CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK------DGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      +|+++|.+|+|||||++.+++.........+.+.+.  ....+.+.      ....+.+|||+|...           +.
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~--~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----------~~   68 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSV--DVKHHTYKEGTPEEKTFFVELWDVGGSES-----------VK   68 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeE--EEEEEEEcCCCCCCcEEEEEEEecCCchh-----------HH
Confidence            689999999999999999998654322222222111  12222221      123578999999975           23


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-----------------ccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG-----------------KKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-----------------~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+...++.++|++++|+|++++-+... ..++..+.+.-.                 .....|+++|.||+|+.+.
T Consensus        69 ~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          69 STRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             HHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence            334456788999999999985544443 244444443210                 0112499999999998764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.58  E-value=9.9e-14  Score=111.37  Aligned_cols=117  Identities=22%  Similarity=0.327  Sum_probs=82.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCcccc-ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +|+++|..++|||||+++|+|..... ......+.|+...........+..+.++||||+..           +......
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~   70 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA   70 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence            68999999999999999999864211 11233466666554444443466789999999953           2233334


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++++|+++++++..++.+.+..+... +.   .++++|+||+|+.+.
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi---~~iIVVlNKiDlv~~  119 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-GN---PMLTVALTKADRVDE  119 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEECCccCCH
Confidence            45678999999999888888887777765543 21   357899999998764

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.58  E-value=4.9e-14  Score=96.82  Aligned_cols=127  Identities=16%  Similarity=0.173  Sum_probs=87.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .....+|+++|+.||||||+++.|.......     ..+|.......+.+ .+..+.++|.+|...           +..
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~   73 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRP   73 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGG
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEecccccc-----------ccc
Confidence            3667899999999999999999998654322     23444455566666 788999999999863           344


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHh
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYL  161 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~  161 (170)
                      .+..+...+++++||+|..+.-.  -.+..+.+.+++..  ....|++|++||.|..+.. ..++.+++
T Consensus        74 ~w~~y~~~~~~iIfVvDssd~~~--l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l  140 (175)
T PF00025_consen   74 LWKSYFQNADGIIFVVDSSDPER--LQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYL  140 (175)
T ss_dssp             GGGGGHTTESEEEEEEETTGGGG--HHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHT
T ss_pred             cceeeccccceeEEEEeccccee--ecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhh
Confidence            55567788999999999974321  22233444444432  2246999999999987652 24455444

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04176 Rap2 Rap2 subgroup

Probab=99.58  E-value=3.8e-14  Score=96.00  Aligned_cols=117  Identities=21%  Similarity=0.179  Sum_probs=71.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|.+|+|||||++.++............   .......... .+  ..+.++||||...+..           ..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~~   66 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI---EDFYRKEIEV-DSSPSVLEILDTAGTEQFAS-----------MR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch---hheEEEEEEE-CCEEEEEEEEECCCcccccc-----------hH
Confidence            579999999999999998888764432211111   1111122222 22  3577899999875421           12


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....++|++++|+|+.+.-+..+ ..++..+.+... ....|+++|.||+|+...
T Consensus        67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~  121 (163)
T cd04176          67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE  121 (163)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc
Confidence            223567899999999974433222 334444444322 123599999999997543

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.58  E-value=9e-14  Score=94.01  Aligned_cols=118  Identities=16%  Similarity=0.062  Sum_probs=69.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|++|+|||||++++++............. .......... ....+.++||||..++           ......
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~~~~~   67 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDG-EDVQLNILDTAGQEDY-----------AAIRDN   67 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECC-EEEEEEEEECCChhhh-----------hHHHHH
Confidence            37899999999999999999976543221111111 1111111111 2346889999998753           122233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .....++++++++..+.-+... ..++..+..... ....|+++|+||+|+..
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~  119 (164)
T cd04139          68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED  119 (164)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence            5567799999999863321111 223333333211 12359999999999876

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.57  E-value=7.1e-14  Score=96.60  Aligned_cols=117  Identities=14%  Similarity=0.039  Sum_probs=75.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ...+|+++|.+|+|||||++.++..........+.+..  . ....... ....+.+|||+|...+           ...
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~--~-~~~~~~~~~~~~l~iwDtaG~e~~-----------~~~   69 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN--Y-TASFEIDTQRIELSLWDTSGSPYY-----------DNV   69 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeee--e-EEEEEECCEEEEEEEEECCCchhh-----------Hhh
Confidence            45689999999999999999998765422211111111  1 1122220 2346889999998642           223


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ...++.++|++++|+|++++.+...  ..+++.+.+...   ..|+++|.||+|+.+
T Consensus        70 ~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~  123 (182)
T cd04172          70 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT  123 (182)
T ss_pred             hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhc
Confidence            3346788999999999985544443  345555655432   259999999999743

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04144 Ras2 Ras2 subfamily

Probab=99.57  E-value=6.6e-14  Score=97.39  Aligned_cols=117  Identities=19%  Similarity=0.160  Sum_probs=70.5

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|.+|+|||||++.+++...........+ ..  ....... .+  ..+.+|||||...+           .....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~-~~--~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DS--YRKQVVV-DGQPCMLEVLDTAGQEEY-----------TALRD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchH-hh--EEEEEEE-CCEEEEEEEEECCCchhh-----------HHHHH
Confidence            479999999999999999986543221111111 11  1111222 23  34788999998642           22233


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK-KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~  152 (170)
                      .++..+|++++|+|.++..+... ..+++.+...... ....|+++|.||+|+...
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~  121 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE  121 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc
Confidence            45667899999999974433332 3444555444321 123599999999998643

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.57  E-value=1.8e-14  Score=95.48  Aligned_cols=101  Identities=21%  Similarity=0.264  Sum_probs=64.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|++|+|||||+|++++....      ...|.     ...+ ..   .++||||....      ....+.... ..
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~-----~~~~-~~---~~iDt~G~~~~------~~~~~~~~~-~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQ-----AVEY-ND---GAIDTPGEYVE------NRRLYSALI-VT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc------cccce-----eEEE-cC---eeecCchhhhh------hHHHHHHHH-HH
Confidence            6899999999999999999986531      11121     1222 22   68999998420      111122222 24


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ..++|++++|+|++++.+..+..+++    ...    .|+++|+||+|+..
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~  102 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAE  102 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCC
Confidence            67899999999997665544432222    121    38999999999865

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.57  E-value=4e-14  Score=96.92  Aligned_cols=113  Identities=21%  Similarity=0.139  Sum_probs=70.1

Q ss_pred             EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      |+++|.+|+|||||++++++........ +  ............ .+  ..+.+|||||...+.           .....
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~-~--~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~~   65 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYV-P--TVFENYSADVEV-DGKPVELGLWDTAGQEDYD-----------RLRPL   65 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCC-C--cEEeeeeEEEEE-CCEEEEEEEEECCCCcccc-----------hhchh
Confidence            5899999999999999999865422211 1  111111122222 22  357899999987532           12223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++++|+|.++.-+...  ..++..+.+..   ...|+++|.||+|+...
T Consensus        66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~  117 (174)
T smart00174       66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRED  117 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhC
Confidence            5678899999999974422222  23444444432   23599999999998653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04134 Rho3 Rho3 subfamily

Probab=99.57  E-value=4.1e-14  Score=98.38  Aligned_cols=116  Identities=16%  Similarity=0.091  Sum_probs=72.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++.+++.........+..  ... ....... ....+.+|||+|...+.           ....
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~--~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~-----------~l~~   66 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVF--ENY-VHDIFVDGLHIELSLWDTAGQEEFD-----------RLRS   66 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcce--eee-EEEEEECCEEEEEEEEECCCChhcc-----------cccc
Confidence            3789999999999999999997654322111111  111 1112221 12468899999987532           1222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+..++++++|+++++.-+...  ..++..+.+..   ...|+++|.||+|+...
T Consensus        67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~  119 (189)
T cd04134          67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA  119 (189)
T ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC
Confidence            35678899999999975433332  23455554432   23599999999998765

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.57  E-value=1.2e-13  Score=101.07  Aligned_cols=125  Identities=22%  Similarity=0.197  Sum_probs=88.3

Q ss_pred             EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhcc
Q 046239           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAK  101 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~  101 (170)
                      +++||-+++|||||++.++...+-..  ..+-+|..+....+....+..+++-|.||+.+......-.+.+|++-+.++ 
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIa--dYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt-  238 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIA--DYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT-  238 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCccc--CCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh-
Confidence            78999999999999999998764221  222233333333333335778999999999998888888889999888777 


Q ss_pred             CCccEEEEEEeCCCC--CCH-HH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          102 GGIHAVLVVFSARNR--FSQ-EE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       102 ~~~~~il~v~~~~~~--~~~-~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         .+++.|+|++..  .++ ++ ..+..+|..+-..-..+|.+||+||+|.+.+
T Consensus       239 ---~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~  290 (369)
T COG0536         239 ---RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD  290 (369)
T ss_pred             ---heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence               889999998721  122 23 3444555554444455799999999996655

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.56  E-value=2.6e-14  Score=97.08  Aligned_cols=118  Identities=19%  Similarity=0.244  Sum_probs=67.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|++|+|||||+++++....... ..+......  .....+ .+  ..+.+|||||......  .    ..    .
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~~~~~i~D~~g~~~~~~--~----~~----~   66 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGE-YDPNLESLY--SRQVTI-DGEQVSLEILDTAGQQQADT--E----QL----E   66 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccc-cCCChHHhc--eEEEEE-CCEEEEEEEEECCCCccccc--c----hH----H
Confidence            489999999999999999876432111 111111111  111222 22  3577999999974100  0    11    1


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|+++.-+... ..++..+.+........|+++|.||+|+...
T Consensus        67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  121 (165)
T cd04146          67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY  121 (165)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence            23456799999999975433332 2344445443210123589999999997543

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.56  E-value=4.1e-14  Score=100.38  Aligned_cols=115  Identities=19%  Similarity=0.291  Sum_probs=75.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccc----c----------CCCCceeEEEeeEEEEee---------CCceEEEEeC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKA----S----------AGSSGVTITCEMKTTVLK---------DGQVVNVIDT   76 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~----~----------~~~~~~t~~~~~~~~~~~---------~~~~~~l~Dt   76 (170)
                      ++|+++|..++|||||+.+|+.......    +          ....+.|.........+.         .+..+.++||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            4799999999999999999875321100    0          111223333222222231         1567889999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      ||+.++           ..........+|++++|+|+.++........++.....   +  .|+++++||+|+.
T Consensus        81 PG~~~f-----------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDF-----------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL  138 (222)
T ss_pred             CCcccc-----------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence            999863           22233445677999999999888877776666654432   2  4899999999976

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04135 Tc10 TC10 subfamily

Probab=99.56  E-value=1.7e-13  Score=93.84  Aligned_cols=115  Identities=20%  Similarity=0.115  Sum_probs=71.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|++|+|||||++.+++........... .  ......... .+  ..+.+|||||...+..           ..
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~-~--~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~   65 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-F--DHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------LR   65 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-e--eeeEEEEEE-CCEEEEEEEEeCCCcccccc-----------cc
Confidence            378999999999999999998765432211111 1  111112222 22  3467899999876421           12


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......|++++|++..++-+..+  ..++..+... ..  ..|+++|.||+|+.+.
T Consensus        66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~~~  119 (174)
T cd04135          66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLRDD  119 (174)
T ss_pred             cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhhcC
Confidence            234678899999999874433322  2344555443 22  2599999999997654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04177 RSR1 RSR1 subgroup

Probab=99.56  E-value=1.1e-13  Score=94.26  Aligned_cols=118  Identities=19%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++++++...........+   ..-.....+. ....+.+|||||...+.           ....
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~   67 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE---DSYRKQVEIDGRQCDLEILDTAGTEQFT-----------AMRE   67 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch---heEEEEEEECCEEEEEEEEeCCCcccch-----------hhhH
Confidence            5799999999999999999987654222111111   1111122221 12467899999987642           2222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....++++++|++.+++-+... ..+.+.+.+... ....|++++.||.|....
T Consensus        68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~  121 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDD  121 (168)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhcccc
Confidence            34456789999999874322222 233444444322 223599999999998654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04128 Spg1 Spg1p

Probab=99.56  E-value=1.1e-13  Score=95.64  Aligned_cols=114  Identities=18%  Similarity=0.135  Sum_probs=70.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|.+|+|||||++.+++.........+.+..  .....+.. .+  ..+.+|||+|...+           .....
T Consensus         2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~--~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~~~~   67 (182)
T cd04128           2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVN--FMEKTISI-RGTEITFSIWDLGGQREF-----------INMLP   67 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceE--EEEEEEEE-CCEEEEEEEEeCCCchhH-----------HHhhH
Confidence            68999999999999999998765422212121111  11122333 22  46789999998742           23334


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .+...+|++++|+|++++.+..+ ..+++.+.+.....  .| ++|.||+|+..
T Consensus        68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~  118 (182)
T cd04128          68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFA  118 (182)
T ss_pred             HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccc
Confidence            46788999999999975544333 23444444432222  35 68899999863

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.56  E-value=4.8e-14  Score=110.30  Aligned_cols=127  Identities=13%  Similarity=0.154  Sum_probs=84.1

Q ss_pred             CCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc--------------c-----------------CCCCceeEEEe
Q 046239           11 KPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S-----------------AGSSGVTITCE   59 (170)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~-----------------~~~~~~t~~~~   59 (170)
                      ..++..++..+|+++|..++|||||++.|+.......              +                 ....+.|....
T Consensus        19 ~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~   98 (474)
T PRK05124         19 LHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVA   98 (474)
T ss_pred             HhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEee
Confidence            3444567778999999999999999999875431100              1                 01123455555


Q ss_pred             eEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 046239           60 MKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY  139 (170)
Q Consensus        60 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (170)
                      ...+.+ .+..+.++||||+.+           +..........+|++++|+|+.+++...+.+.+..+.. ++.   ++
T Consensus        99 ~~~~~~-~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~  162 (474)
T PRK05124         99 YRYFST-EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KH  162 (474)
T ss_pred             EEEecc-CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---Cc
Confidence            555555 577899999999753           22222223477899999999987776655544443333 321   47


Q ss_pred             EEEEEEcCCCCCCC
Q 046239          140 MIVVFTGGDYLEDN  153 (170)
Q Consensus       140 ~ivv~tk~D~~~~~  153 (170)
                      +++++||+|....+
T Consensus       163 iIvvvNKiD~~~~~  176 (474)
T PRK05124        163 LVVAVNKMDLVDYS  176 (474)
T ss_pred             eEEEEEeeccccch
Confidence            99999999998543

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.56  E-value=1.3e-13  Score=94.67  Aligned_cols=114  Identities=22%  Similarity=0.140  Sum_probs=72.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEee-EEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM-KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      .+|+++|.+|+|||||++.+..........    .|..... ..... .+  ..+.+|||+|...+.           ..
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~----pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~   65 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYV----PTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYD-----------RL   65 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CceeeeeEEEEEE-CCEEEEEEEEECCCccchh-----------hh
Confidence            478999999999999999998755322111    1211111 12223 33  467799999997531           12


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......++|++++|+|.+++.+....  .++..+.... .  ..|+++|.||+|+...
T Consensus        66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~  120 (175)
T cd01874          66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-P--KTPFLLVGTQIDLRDD  120 (175)
T ss_pred             hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECHhhhhC
Confidence            22356788999999999755433332  2444444432 1  2599999999997544

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01892 Miro2 Miro2 subfamily

Probab=99.56  E-value=1.3e-13  Score=94.24  Aligned_cols=118  Identities=15%  Similarity=0.036  Sum_probs=70.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccc-cccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      +-.+++++|.+|+|||||++.+++.... .....+.+  .........+ .+  ..+.++|++|...+.           
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~--~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------   68 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIK--PRYAVNTVEV-YGQEKYLILREVGEDEVAI-----------   68 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccC--cceEEEEEEE-CCeEEEEEEEecCCccccc-----------
Confidence            4468999999999999999999986643 22111111  1111222333 23  457789999987532           


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+..+|++++|+|++++.+.  ....+++.. +......|+++|.||+|+.+.
T Consensus        69 ~~~~~~~~~~d~~llv~d~~~~~s~--~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~~  123 (169)
T cd01892          69 LLNDAELAACDVACLVYDSSDPKSF--SYCAEVYKK-YFMLGEIPCLFVAAKADLDEQ  123 (169)
T ss_pred             ccchhhhhcCCEEEEEEeCCCHHHH--HHHHHHHHH-hccCCCCeEEEEEEccccccc
Confidence            1112235788999999998743211  122233332 211123599999999998644

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.56  E-value=1.4e-13  Score=112.29  Aligned_cols=121  Identities=21%  Similarity=0.219  Sum_probs=86.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc---c----c---------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK---A----S---------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~---~----~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      ...-++|+++|+.++|||||+++|+......   .    +         ....+.|.......+.| .+..+.++||||+
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~   85 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH   85 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence            3445799999999999999999996422110   0    0         01235666666677777 7889999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .++.       .+    +......+|++++|+|+.++....+...+..+...   +  .|+++++||+|....+
T Consensus        86 ~~~~-------~~----~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~---~--~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        86 VDFT-------VE----VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY---E--VPRIAFVNKMDKTGAN  143 (689)
T ss_pred             cchh-------HH----HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc---C--CCEEEEEECCCCCCCC
Confidence            8642       11    22344566999999999878777777777665443   2  4899999999988653

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK00007 elongation factor G; Reviewed

Probab=99.56  E-value=1e-13  Score=113.17  Aligned_cols=121  Identities=21%  Similarity=0.235  Sum_probs=87.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh---CCcccccc-------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL---GRKAFKAS-------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~---~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      ...-++|+++|+.++|||||+++|+   |.......             ....+.|.......+.| .+..+.++||||+
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~   85 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH   85 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence            3445799999999999999999996   32211100             02345666666666767 7889999999998


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .++       ..+..    .....+|++++|+|+.+++..++...+..+.+..     .|.++++||+|....+
T Consensus        86 ~~f-------~~ev~----~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~-----~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         86 VDF-------TIEVE----RSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK-----VPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHH-------HHHHH----HHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC-----CCEEEEEECCCCCCCC
Confidence            752       12222    3345569999999998888888888888776642     4889999999998763

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.56  E-value=2.8e-13  Score=90.50  Aligned_cols=117  Identities=23%  Similarity=0.182  Sum_probs=67.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|.+|+|||||++++++... .... ....+.......... .+  ..+.++|+||...+.           ...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~~   67 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEY-KPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR-----------AIR   67 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC-cCcC-CCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch-----------HHH
Confidence            5899999999999999999998773 2222 223333333333334 44  568899999976531           111


Q ss_pred             HhccCCccEEEEEEeCCCC-CCHH--HHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNR-FSQE--EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......++.+++++|.... .+..  .......+......  ..|+++++||+|+...
T Consensus        68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~  123 (161)
T TIGR00231        68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA  123 (161)
T ss_pred             HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc
Confidence            1122334555555555322 1111  11233334333321  3599999999999765

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.56  E-value=1.6e-13  Score=109.78  Aligned_cols=116  Identities=20%  Similarity=0.263  Sum_probs=83.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcc---ccc-----------cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKA---FKA-----------SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG   85 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~---~~~-----------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   85 (170)
                      ++|+++|..++|||||+++|+....   ...           .....+.|.......+.| .+..+.++||||+.+|   
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF---   77 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF---   77 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence            5799999999999999999985311   110           012245666666667777 7889999999999763   


Q ss_pred             chHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           86 SEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                              ...+......+|++++|+|+.++...+...++..+.+.   .  .|.++++||+|....
T Consensus        78 --------~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~---~--ip~IVviNKiD~~~a  131 (594)
T TIGR01394        78 --------GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL---G--LKPIVVINKIDRPSA  131 (594)
T ss_pred             --------HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC---C--CCEEEEEECCCCCCc
Confidence                    22223345567999999999877777777776666553   2  388999999998755

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12739 elongation factor G; Reviewed

Probab=99.55  E-value=1e-13  Score=113.19  Aligned_cols=120  Identities=22%  Similarity=0.247  Sum_probs=86.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--cc--------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK--AS--------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      ...-.+|+++|+.++|||||+++|+......  .+              ....+.|.......+.| .+..+.++||||+
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~   83 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGH   83 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCH
Confidence            3445789999999999999999996421100  00              12345566666666767 7889999999998


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .++           ...+......+|++++|+|+.++...++...+..+...   +  .|+++++||+|....
T Consensus        84 ~~f-----------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~---~--~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 VDF-----------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY---G--VPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHH-----------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCCCCC
Confidence            642           11233445566999999999888888888777776553   2  488999999999866

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.55  E-value=1.9e-14  Score=108.15  Aligned_cols=119  Identities=21%  Similarity=0.196  Sum_probs=70.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCcee-EEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-ITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ...+|+|+|.+|+|||||||+|.|......+....|.+ ++.....+..+...++.+||.||.+.+....+....++   
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~---  110 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV---  110 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT---
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc---
Confidence            45789999999999999999999876544443333322 12233334444567899999999987544334332222   


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDY  149 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~  149 (170)
                         -....|++|++.+  .+++..+..++..+.+.-     +++++|-||+|.
T Consensus       111 ---~~~~yD~fiii~s--~rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~  153 (376)
T PF05049_consen  111 ---KFYRYDFFIIISS--ERFTENDVQLAKEIQRMG-----KKFYFVRTKVDS  153 (376)
T ss_dssp             ---TGGG-SEEEEEES--SS--HHHHHHHHHHHHTT------EEEEEE--HHH
T ss_pred             ---cccccCEEEEEeC--CCCchhhHHHHHHHHHcC-----CcEEEEEecccc
Confidence               2456688776655  389999988888888752     589999999995

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.55  E-value=1.2e-13  Score=99.73  Aligned_cols=131  Identities=20%  Similarity=0.180  Sum_probs=89.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc-hHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS-EFVGKEIV   94 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~   94 (170)
                      ......++++|.+++|||||.|.+.|.......  ....|++...-.+-....-.+.++||||+-....-. ......++
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS--~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--RKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCcccccc--ccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            345678999999999999999999998875542  233444444433333367789999999998754322 22233334


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +..+.+..++|+++.++|+.+.-.....+.++.+.....    .|-++|.||.|.+..
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~  200 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQ  200 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchh
Confidence            444556778899999999974333334556666666531    389999999998866

>cd01875 RhoG RhoG subfamily

Probab=99.55  E-value=1.3e-13  Score=96.01  Aligned_cols=117  Identities=16%  Similarity=0.028  Sum_probs=72.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..+|+++|.+|+|||||+..++..........+.+ .. . ...... .....+.+|||+|...+           ..+.
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~-~-~~~~~~~~~~~~l~i~Dt~G~e~~-----------~~l~   68 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVF-DN-Y-SAQTAVDGRTVSLNLWDTAGQEEY-----------DRLR   68 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceE-ee-e-EEEEEECCEEEEEEEEECCCchhh-----------hhhh
Confidence            36899999999999999999886543222111111 11 1 111122 12346889999999752           2334


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..++.++|++++|+|++++-+....  .+...+.+.. .  ..|+++|.||.|+.+.
T Consensus        69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~~  122 (191)
T cd01875          69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLRND  122 (191)
T ss_pred             hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhhcC
Confidence            4467889999999999755443332  2333344322 2  3599999999997543

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.55  E-value=2.1e-13  Score=93.65  Aligned_cols=115  Identities=17%  Similarity=0.003  Sum_probs=70.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+++++|.+|+|||||+..++..............   ......... ....+.+|||||...+           .....
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~---~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~   67 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD---NYSANVMVDGKPVNLGLWDTAGQEDY-----------DRLRP   67 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee---eeEEEEEECCEEEEEEEEECCCchhh-----------hhhhh
Confidence            57999999999999999988865432221111111   111112221 1246789999998642           22223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .+..++|++++|+|++++-+....  .++..+.... .  ..|+++|.||+|+..
T Consensus        68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilvgnK~Dl~~  119 (174)
T cd01871          68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P--NTPIILVGTKLDLRD  119 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEeeChhhcc
Confidence            456789999999999854333332  2444444432 1  259999999999754

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.55  E-value=1.4e-13  Score=97.89  Aligned_cols=115  Identities=20%  Similarity=0.220  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCc---cc--------------------------cccCCCCceeEEEeeEEEEeeCCceE
Q 046239           21 TVVLLGRTGNGKSATGNSILGRK---AF--------------------------KASAGSSGVTITCEMKTTVLKDGQVV   71 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~---~~--------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~   71 (170)
                      +|+++|..++|||||+.+|+...   ..                          .......+.|.......+.+ .+..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence            48999999999999999885321   10                          00112345556666666666 78899


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239           72 NVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFDYMIVVF  144 (170)
Q Consensus        72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (170)
                      .++||||+.++           ..........+|++++|+|+.+.       ........+.... .++   .+|+++++
T Consensus        80 ~liDtpG~~~~-----------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~iiivv  144 (219)
T cd01883          80 TILDAPGHRDF-----------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLG---VKQLIVAV  144 (219)
T ss_pred             EEEECCChHHH-----------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcC---CCeEEEEE
Confidence            99999998542           12222344678999999999753       2223333333332 222   14899999


Q ss_pred             EcCCCCC
Q 046239          145 TGGDYLE  151 (170)
Q Consensus       145 tk~D~~~  151 (170)
                      ||+|+..
T Consensus       145 NK~Dl~~  151 (219)
T cd01883         145 NKMDDVT  151 (219)
T ss_pred             Ecccccc
Confidence            9999883

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.55  E-value=2e-13  Score=97.00  Aligned_cols=116  Identities=16%  Similarity=0.036  Sum_probs=71.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++.+++.........+.+..- .  ..+.. .....+.+|||+|...+           .....
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~--~~~~~~~~~v~L~iwDt~G~e~~-----------~~l~~   67 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-T--ASFEIDKRRIELNMWDTSGSSYY-----------DNVRP   67 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-E--EEEEECCEEEEEEEEeCCCcHHH-----------HHHhH
Confidence            4789999999999999999997654322111111111 1  11222 02346778999998642           22333


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .++..+|++++|+|+++.-+....  .+...+... ..  ..|+++|.||+|+...
T Consensus        68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~--~~piiLVgnK~DL~~~  120 (222)
T cd04173          68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CP--NAKVVLVGCKLDMRTD  120 (222)
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEEECcccccc
Confidence            467899999999999854333322  222223222 12  2499999999997543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04148 RGK RGK subfamily

Probab=99.55  E-value=1.5e-13  Score=97.75  Aligned_cols=118  Identities=20%  Similarity=0.076  Sum_probs=69.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCce-eEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++.+++.........+... ........+.. ....+.+|||||...       .   ...   
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~i~Dt~G~~~-------~---~~~---   66 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG-EESTLVVIDHWEQEM-------W---TED---   66 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC-EEEEEEEEeCCCcch-------H---HHh---
Confidence            37899999999999999999754432111111111 11111112211 235688999999972       1   111   


Q ss_pred             hccC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKG-GIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~-~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+.. .+|++++|+++++.-+... ..++..+.+.. .....|+++|.||+|+...
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS  121 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc
Confidence            1223 7899999999975433222 33444444432 1123599999999998654

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PLN00023 GTP-binding protein; Provisional

Probab=99.55  E-value=3.7e-13  Score=99.43  Aligned_cols=127  Identities=19%  Similarity=0.218  Sum_probs=79.8

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--------------CCceEEEEeCCC
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--------------DGQVVNVIDTPG   78 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~l~DtpG   78 (170)
                      ........+|+++|.+|+|||||++.+++.........+.+.+.  ....+.+.              ....+.||||+|
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~--~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG   92 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV--GVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG   92 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeE--EEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence            34455668999999999999999999997654222222222221  11222221              124588999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc----------cccceEEEEEEcC
Q 046239           79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK----------KIFDYMIVVFTGG  147 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~----------~~~~~~ivv~tk~  147 (170)
                      ...           +..+...++.+++++|+|+|+++.-+... ..+++.+......          ....|++||.||+
T Consensus        93 qEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~  161 (334)
T PLN00023         93 HER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA  161 (334)
T ss_pred             Chh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence            975           33444556788999999999985433332 3445555543210          0124899999999


Q ss_pred             CCCCC
Q 046239          148 DYLED  152 (170)
Q Consensus       148 D~~~~  152 (170)
                      |+...
T Consensus       162 DL~~~  166 (334)
T PLN00023        162 DIAPK  166 (334)
T ss_pred             ccccc
Confidence            98543

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=5e-14  Score=107.24  Aligned_cols=136  Identities=17%  Similarity=0.152  Sum_probs=92.4

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      ......+..|+++|+|++|||||+|+|+..+....+. -++.|...-...++. ++..++++||.|+-+-.  .+.+...
T Consensus       262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~--~~~iE~~  337 (531)
T KOG1191|consen  262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTV-NGVPVRLSDTAGIREES--NDGIEAL  337 (531)
T ss_pred             HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeec-CCeEEEEEecccccccc--CChhHHH
Confidence            3345567899999999999999999999987655432 335665555666666 89999999999998711  1222222


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-ccc------ceEEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK-KIF------DYMIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~------~~~ivv~tk~D~~~~  152 (170)
                      =+..++....++|++++|+|+.+..+..+....+.+...-.. .+.      .+++++.||.|....
T Consensus       338 gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  338 GIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             hHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            223333455678999999999766666665555554443211 122      588999999997654

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.54  E-value=2.1e-13  Score=89.84  Aligned_cols=116  Identities=18%  Similarity=0.240  Sum_probs=88.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+.+|+++|..||||||+++.+.+...     ....+|...++....+ ++..+.++|.-|..           .++++
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~-----------~lr~~   76 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQK-----------TLRSY   76 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCcc-----------hhHHH
Confidence            4478999999999999999999999774     2334555667777766 78899999999987           47888


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-c-ccceEEEEEEcCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK-K-IFDYMIVVFTGGDYLE  151 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~ivv~tk~D~~~  151 (170)
                      +++++...|++++|+|.+++...++  ....+.+++.+ + +-.|++++.||.|...
T Consensus        77 W~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~  131 (185)
T KOG0073|consen   77 WKNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPG  131 (185)
T ss_pred             HHHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence            8898999999999999976554444  33444444432 1 2249999999999873

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.54  E-value=1.3e-13  Score=96.49  Aligned_cols=115  Identities=22%  Similarity=0.215  Sum_probs=70.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|.+|+|||||++.+++..........   +.......+.+ .+  ..+.++|+||...+           .....
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~~~~   65 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRT---VEEMHRKEYEV-GGVSLTLDILDTSGSYSF-----------PAMRK   65 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCc---hhhheeEEEEE-CCEEEEEEEEECCCchhh-----------hHHHH
Confidence            4799999999999999999876542211111   11111122333 33  46789999998753           11222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .....+|++++|+|+.+..+... ..++..+.+.... ...|+++|+||+|...
T Consensus        66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~  118 (198)
T cd04147          66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE  118 (198)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence            34577899999999974433332 2333344443321 2259999999999865

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.54  E-value=2.9e-13  Score=92.68  Aligned_cols=116  Identities=16%  Similarity=0.086  Sum_probs=69.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++.+++............ ..  ......+. ....+.++||||..++.           ....
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~~   67 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-EN--YVADIEVDGKQVELALWDTAGQEDYD-----------RLRP   67 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc-cc--eEEEEEECCEEEEEEEEeCCCchhhh-----------hccc
Confidence            5799999999999999999997654322111111 11  11122221 12357899999986421           1112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++|++++|+++++.-+...  ..++..+.+...   ..|+++|.||+|+...
T Consensus        68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  120 (175)
T cd01870          68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND  120 (175)
T ss_pred             cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcccC
Confidence            34578899999999874322222  223333443222   2599999999997654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK10218 GTP-binding protein; Provisional

Probab=99.54  E-value=3.2e-13  Score=108.05  Aligned_cols=118  Identities=18%  Similarity=0.199  Sum_probs=84.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccc--cc------------cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAF--KA------------SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~--~~------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      -.+|+++|..++|||||+++|+.....  ..            .....+.|.......+.+ .+..+.++||||+.+|. 
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~-   82 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG-   82 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH-
Confidence            468999999999999999999853211  00            112345666666666666 77899999999998642 


Q ss_pred             CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                                ..+......+|++++|+|+.++...+....+..+...   .  .|.++++||+|....+
T Consensus        83 ----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~---g--ip~IVviNKiD~~~a~  136 (607)
T PRK10218         83 ----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY---G--LKPIVVINKVDRPGAR  136 (607)
T ss_pred             ----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc---C--CCEEEEEECcCCCCCc
Confidence                      2223345677999999999877777776666655442   2  4789999999987653

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.54  E-value=1.4e-13  Score=106.08  Aligned_cols=118  Identities=16%  Similarity=0.191  Sum_probs=80.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcccc--------------c-----------------cCCCCceeEEEeeEEEEeeCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFK--------------A-----------------SAGSSGVTITCEMKTTVLKDG   68 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~-----------------~~~~~~~t~~~~~~~~~~~~~   68 (170)
                      .+|+++|+.++|||||++.|+......              .                 .....+.|.......+.+ .+
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence            478999999999999999986332110              0                 011234555555555655 67


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239           69 QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      ..+.++||||+.+           +..........+|++++|+|+.+++..++.+.+..+... +.   +++++++||+|
T Consensus        80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D  144 (406)
T TIGR02034        80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD  144 (406)
T ss_pred             eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence            7899999999864           222222345678999999999878777766655544443 21   47899999999


Q ss_pred             CCCCC
Q 046239          149 YLEDN  153 (170)
Q Consensus       149 ~~~~~  153 (170)
                      ....+
T Consensus       145 ~~~~~  149 (406)
T TIGR02034       145 LVDYD  149 (406)
T ss_pred             cccch
Confidence            98643

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.54  E-value=6.4e-14  Score=95.49  Aligned_cols=69  Identities=14%  Similarity=0.171  Sum_probs=44.5

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG  147 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (170)
                      ...+.|+||||+.+......       ..+..+...+|++++|+++....+..+...+.......    ...+++|+||+
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~----~~~~i~V~nk~  168 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD----KSRTIFVLNKA  168 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT----CSSEEEEEE-G
T ss_pred             ccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC----CCeEEEEEcCC
Confidence            35589999999986332222       33333447889999999998666666555544444332    13689999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.53  E-value=3.9e-15  Score=101.61  Aligned_cols=131  Identities=17%  Similarity=0.255  Sum_probs=71.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ...++|+||+|||||+|+..|........ ............   ....+..+.++|+||+..-.       .++...+.
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T-~tS~e~n~~~~~---~~~~~~~~~lvD~PGH~rlr-------~~~~~~~~   71 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT-VTSMENNIAYNV---NNSKGKKLRLVDIPGHPRLR-------SKLLDELK   71 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B----SSEEEECCG---SSTCGTCECEEEETT-HCCC-------HHHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCe-eccccCCceEEe---ecCCCCEEEEEECCCcHHHH-------HHHHHhhh
Confidence            46899999999999999999987532211 111011111000   11145689999999998632       12222211


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccceEEEEEEcCCCCCCCh-hhHHHHhh
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK----KIFDYMIVVFTGGDYLEDNE-KTLEDYLG  162 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~tk~D~~~~~~-~~~~~~~~  162 (170)
                       ....+.+|+||+|.. .+...-....+.|.+.+..    ....|++|+.||.|.+...+ ..++..++
T Consensus        72 -~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE  138 (181)
T PF09439_consen   72 -YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE  138 (181)
T ss_dssp             -HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred             -chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence             245578999999986 3333445556666665542    22359999999999987643 34444433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.53  E-value=1.8e-13  Score=94.27  Aligned_cols=118  Identities=19%  Similarity=0.186  Sum_probs=69.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|++|+|||||++.+++.............   ......... ....+.++||||..++           .....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~   67 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIEN---TFSKIIRYKGQDYHLEIVDTAGQDEY-----------SILPQ   67 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhh---hEEEEEEECCEEEEEEEEECCChHhh-----------HHHHH
Confidence            58999999999999999999976532211111110   011112221 1235689999998642           22223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......++++++++.++..+... ..+...+.+.... ...|++++.||+|....
T Consensus        68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~  121 (180)
T cd04137          68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ  121 (180)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc
Confidence            34567799999999874332222 2333334333221 22489999999998643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>TIGR00503 prfC peptide chain release factor 3

Probab=99.53  E-value=3.4e-13  Score=106.59  Aligned_cols=121  Identities=16%  Similarity=0.143  Sum_probs=81.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC---cccccc-----------------CCCCceeEEEeeEEEEeeCCceEEEEe
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR---KAFKAS-----------------AGSSGVTITCEMKTTVLKDGQVVNVID   75 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~---~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~~l~D   75 (170)
                      .....+|+++|..++|||||+++|+..   ......                 ....+.+.......+.+ .+..+.++|
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliD   86 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLD   86 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEE
Confidence            345689999999999999999988521   111000                 01123444444555666 678899999


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           76 TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      |||+.++           .......+..+|++++|+|+.+++......+++.+...   .  .|+++++||+|....+
T Consensus        87 TPG~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~---~--~PiivviNKiD~~~~~  148 (527)
T TIGR00503        87 TPGHEDF-----------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR---D--TPIFTFMNKLDRDIRD  148 (527)
T ss_pred             CCChhhH-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc---C--CCEEEEEECccccCCC
Confidence            9999753           22222344567999999999877776666666544331   2  4999999999987553

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd04167 Snu114p Snu114p subfamily

Probab=99.53  E-value=1.3e-13  Score=97.59  Aligned_cols=115  Identities=19%  Similarity=0.252  Sum_probs=71.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcccccc-----------------CCCCceeEEEeeEEEEee----CCceEEEEeCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------AGSSGVTITCEMKTTVLK----DGQVVNVIDTPG   78 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG   78 (170)
                      ++|+++|..|+|||||+++|++.......                 ....+.+.........+.    ....+.++||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            36899999999999999999864321110                 001122222222222221    235789999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      +.++           ..........+|++++|+|+.+..+......++.+..   ..  .|+++|+||+|.+
T Consensus        81 ~~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---EG--LPIVLVINKIDRL  136 (213)
T ss_pred             Ccch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence            9863           1122234456799999999986766655444444332   12  5899999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.53  E-value=2.7e-13  Score=108.08  Aligned_cols=116  Identities=19%  Similarity=0.196  Sum_probs=76.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-----------------CCceEEEEeCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-----------------DGQVVNVIDTPGLF   80 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~   80 (170)
                      +.+.|+++|.+++|||||+|+|++........  .+.|.........+.                 ....+.++||||+.
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~--ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e   80 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREA--GGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE   80 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccC--CceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence            35789999999999999999999875432211  112221111111100                 01248899999987


Q ss_pred             CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .+           ..+.......+|++++|++++++....+...+..+...   .  .|+++++||+|+..
T Consensus        81 ~f-----------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~---~--vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        81 AF-----------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY---K--TPFVVAANKIDRIP  135 (590)
T ss_pred             hH-----------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc---C--CCEEEEEECCCccc
Confidence            53           22223345678999999999877777776666655432   2  48999999999874

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.53  E-value=3.4e-13  Score=97.39  Aligned_cols=116  Identities=21%  Similarity=0.151  Sum_probs=70.0

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|..|+|||||++.+++.........+   ........+.+ .+  ..+.+|||+|...+.           ....
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pT---i~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~-----------~~~~   66 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPT---IEDFHRKLYSI-RGEVYQLDILDTSGNHPFP-----------AMRR   66 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCCCCCCCC---hhHhEEEEEEE-CCEEEEEEEEECCCChhhh-----------HHHH
Confidence            6899999999999999999865543211111   11111122223 23  457799999986531           1112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-------ccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG-------KKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-------~~~~~~~ivv~tk~D~~~  151 (170)
                      .....+|++++|+|+++..+... ..+++++.+...       .....|+++|.||+|+..
T Consensus        67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            23467799999999985433222 233444433210       112359999999999875

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.53  E-value=2.7e-13  Score=105.37  Aligned_cols=118  Identities=19%  Similarity=0.210  Sum_probs=80.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCc---cc--------------------------cccCCCCceeEEEeeEEEEee
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRK---AF--------------------------KASAGSSGVTITCEMKTTVLK   66 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~---~~--------------------------~~~~~~~~~t~~~~~~~~~~~   66 (170)
                      .++..+++++|..++|||||+..|+...   ..                          .......+.|.......+.+ 
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-   82 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-   82 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-
Confidence            4667899999999999999998876411   00                          00112345666666666666 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhcccccce
Q 046239           67 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-------SQEEEAAVHRLPTLFGKKIFDY  139 (170)
Q Consensus        67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~  139 (170)
                      .+..+.++||||+.+           +..........+|++++|+|+.++.       ..+..+.+..+... +-   ++
T Consensus        83 ~~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi---~~  147 (446)
T PTZ00141         83 PKYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GV---KQ  147 (446)
T ss_pred             CCeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CC---Ce
Confidence            678899999999874           3333334456789999999998654       24555555544442 21   36


Q ss_pred             EEEEEEcCCC
Q 046239          140 MIVVFTGGDY  149 (170)
Q Consensus       140 ~ivv~tk~D~  149 (170)
                      +++++||+|.
T Consensus       148 iiv~vNKmD~  157 (446)
T PTZ00141        148 MIVCINKMDD  157 (446)
T ss_pred             EEEEEEcccc
Confidence            8899999994

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.53  E-value=5.2e-13  Score=95.04  Aligned_cols=117  Identities=17%  Similarity=0.106  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccc-cCC-----------CCceeEE------------------------EeeEEEE
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKA-SAG-----------SSGVTIT------------------------CEMKTTV   64 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~-----------~~~~t~~------------------------~~~~~~~   64 (170)
                      +++++|..++|||||++.++....... +..           ..+.|..                        .......
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            478999999999999999985322110 000           0111110                        0001112


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239           65 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF  144 (170)
Q Consensus        65 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (170)
                      . .+..+.++||||+..+       ...+...+  ....+|++++|+++.+++...+...+.++...-     .|+++|+
T Consensus        81 ~-~~~~i~liDtpG~~~~-------~~~~~~~~--~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~-----ip~ivvv  145 (224)
T cd04165          81 K-SSKLVTFIDLAGHERY-------LKTTLFGL--TGYAPDYAMLVVAANAGIIGMTKEHLGLALALN-----IPVFVVV  145 (224)
T ss_pred             e-CCcEEEEEECCCcHHH-------HHHHHHhh--cccCCCEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCEEEEE
Confidence            2 4678999999998642       22222111  113689999999998888888888888877642     4899999


Q ss_pred             EcCCCCCC
Q 046239          145 TGGDYLED  152 (170)
Q Consensus       145 tk~D~~~~  152 (170)
                      ||+|+...
T Consensus       146 NK~D~~~~  153 (224)
T cd04165         146 TKIDLAPA  153 (224)
T ss_pred             ECccccCH
Confidence            99998755

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.53  E-value=3e-13  Score=106.89  Aligned_cols=119  Identities=22%  Similarity=0.296  Sum_probs=85.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~   96 (170)
                      ..+++++|.+|+|||||+|+|+|.....+  .-++.|.........+ .+..+.++|.||.++...  .++...++++  
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~Vg--NwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~l--   77 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVG--NWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFL--   77 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceec--CCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHH--
Confidence            35699999999999999999999876433  3457888777777777 778899999999997544  3344444443  


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         ...++|+++-|+|+. ++...-.-.++ +.+.   +  .|+++++|.+|.-+.
T Consensus        78 ---l~~~~D~ivnVvDAt-nLeRnLyltlQ-LlE~---g--~p~ilaLNm~D~A~~  123 (653)
T COG0370          78 ---LEGKPDLIVNVVDAT-NLERNLYLTLQ-LLEL---G--IPMILALNMIDEAKK  123 (653)
T ss_pred             ---hcCCCCEEEEEcccc-hHHHHHHHHHH-HHHc---C--CCeEEEeccHhhHHh
Confidence               367899999999997 33322222222 2232   2  489999999997644

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.52  E-value=2.6e-13  Score=92.92  Aligned_cols=115  Identities=19%  Similarity=0.076  Sum_probs=70.3

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +++++|++|+|||||++++.+...... ..+  ............. ....+.+|||||...+           ......
T Consensus         2 k~~i~G~~~~GKtsl~~~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~   67 (173)
T cd04130           2 KCVLVGDGAVGKTSLIVSYTTNGYPTE-YVP--TAFDNFSVVVLVDGKPVRLQLCDTAGQDEF-----------DKLRPL   67 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC-CCC--ceeeeeeEEEEECCEEEEEEEEECCCChhh-----------cccccc
Confidence            689999999999999999976543221 111  1111111122221 1246788999998653           222233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +..++|++++|+|+.++-+...  ..++..+.....   ..|++++.||+|+...
T Consensus        68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  119 (173)
T cd04130          68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRTD  119 (173)
T ss_pred             ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhccC
Confidence            5678899999999975433332  234444444221   2599999999997643

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04133 Rop_like Rop subfamily

Probab=99.52  E-value=2.4e-13  Score=93.43  Aligned_cols=116  Identities=19%  Similarity=0.083  Sum_probs=74.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+++++|.+|+|||||+..++..........+.+...   ...+.. .....+.+|||+|...+.           ....
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~---~~~~~~~~~~v~l~i~Dt~G~~~~~-----------~~~~   67 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVSVDGNTVNLGLWDTAGQEDYN-----------RLRP   67 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee---EEEEEECCEEEEEEEEECCCCcccc-----------ccch
Confidence            4789999999999999999987554222122211111   111222 123567899999997642           2222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+++++++|+|.+++-+....  .++..+.+.. .  ..|+++|.||+|+.+.
T Consensus        68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~  120 (176)
T cd04133          68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-P--NVPIVLVGTKLDLRDD  120 (176)
T ss_pred             hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhccC
Confidence            356788999999999865554442  4555555432 2  2599999999998543

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.52  E-value=2.2e-13  Score=110.28  Aligned_cols=122  Identities=16%  Similarity=0.173  Sum_probs=81.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc--------------c-----------------CCCCceeEEEeeEEE
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S-----------------AGSSGVTITCEMKTT   63 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~-----------------~~~~~~t~~~~~~~~   63 (170)
                      +..+..+|+++|+.++|||||++.|+.......              +                 ....+.|.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            455667899999999999999999986432111              0                 011234444444555


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 046239           64 VLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVV  143 (170)
Q Consensus        64 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (170)
                      .+ .+..+.++||||+.+       ....+.    .....+|++++|+|+.++...++.+.+..+... +.   ++++++
T Consensus       100 ~~-~~~~~~liDtPG~~~-------f~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv  163 (632)
T PRK05506        100 AT-PKRKFIVADTPGHEQ-------YTRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA  163 (632)
T ss_pred             cc-CCceEEEEECCChHH-------HHHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence            55 677899999999753       122222    235678999999999877766655555544433 22   478999


Q ss_pred             EEcCCCCCC
Q 046239          144 FTGGDYLED  152 (170)
Q Consensus       144 ~tk~D~~~~  152 (170)
                      +||+|..+.
T Consensus       164 vNK~D~~~~  172 (632)
T PRK05506        164 VNKMDLVDY  172 (632)
T ss_pred             EEecccccc
Confidence            999999853

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.52  E-value=7.6e-14  Score=91.48  Aligned_cols=114  Identities=22%  Similarity=0.277  Sum_probs=70.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|++|||||||+++|.+...      ....|....     + .+   .++||||-+-    +.   ..+...+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~-----~-~~---~~IDTPGEyi----E~---~~~y~aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIE-----Y-YD---NTIDTPGEYI----EN---PRFYHALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeE-----e-cc---cEEECChhhe----eC---HHHHHHHHH
Confidence            5899999999999999999998553      112222222     1 11   2599999873    11   122222233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC--CCChhhHHHHhhh
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL--EDNEKTLEDYLGH  163 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~--~~~~~~~~~~~~~  163 (170)
                      ....+|+++++.|++++.......+...    |    .+|+|-|+||+|+.  +.+-+..+++++.
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP~fa~~----f----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~  117 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPPGFASM----F----NKPVIGVITKIDLPSDDANIERAKKWLKN  117 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCchhhcc----c----CCCEEEEEECccCccchhhHHHHHHHHHH
Confidence            4457799999999975433332222221    2    14999999999998  3322444445543

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.52  E-value=3.6e-13  Score=104.48  Aligned_cols=121  Identities=20%  Similarity=0.233  Sum_probs=78.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC---Ccccc-----------c---------------cCCCCceeEEEeeEEEEee
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG---RKAFK-----------A---------------SAGSSGVTITCEMKTTVLK   66 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~---~~~~~-----------~---------------~~~~~~~t~~~~~~~~~~~   66 (170)
                      .++..+|+++|..++|||||+++|+.   .....           .               .....+.|.......+.+ 
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence            56678999999999999999999984   21100           0               011235566666666665 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhcccccceEEEE
Q 046239           67 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR---FSQEEEAAVHRLPTLFGKKIFDYMIVV  143 (170)
Q Consensus        67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (170)
                      .+..+.++||||+.+           +..........+|++++|+|++++   ........+... ..++   ..+++++
T Consensus        83 ~~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~---~~~iIVv  147 (426)
T TIGR00483        83 DKYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLG---INQLIVA  147 (426)
T ss_pred             CCeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcC---CCeEEEE
Confidence            677899999999753           222222345678999999999865   222222222222 2222   1479999


Q ss_pred             EEcCCCCCC
Q 046239          144 FTGGDYLED  152 (170)
Q Consensus       144 ~tk~D~~~~  152 (170)
                      +||+|+.+.
T Consensus       148 iNK~Dl~~~  156 (426)
T TIGR00483       148 INKMDSVNY  156 (426)
T ss_pred             EEChhccCc
Confidence            999999753

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.52  E-value=1.8e-13  Score=90.56  Aligned_cols=115  Identities=21%  Similarity=0.137  Sum_probs=68.3

Q ss_pred             EEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccC
Q 046239           24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKG  102 (170)
Q Consensus        24 lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~  102 (170)
                      ++|++|+|||||+|++++............  .......... .....+.++|+||....           .........
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~~~   67 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI--IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLYYR   67 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch--hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHHhc
Confidence            589999999999999998765211111111  1111111111 02567899999998752           111134557


Q ss_pred             CccEEEEEEeCCCCCCHHHHHHH--HHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239          103 GIHAVLVVFSARNRFSQEEEAAV--HRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       103 ~~~~il~v~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .++++++|+++....+..+...+  ..+....  ....|+++++||+|.....
T Consensus        68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~~  118 (157)
T cd00882          68 GADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEER  118 (157)
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEecccccccc
Confidence            78999999999854333332222  1111211  2235999999999987663

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.51  E-value=1e-13  Score=93.78  Aligned_cols=116  Identities=17%  Similarity=0.168  Sum_probs=73.5

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +|+++|..|+|||||++.+++.........+.+....  ...... .....+.+||++|...+           ......
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~l~i~D~~g~~~~-----------~~~~~~   67 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSY--SKEVSIDGKPVNLEIWDTSGQERF-----------DSLRDI   67 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEE--EEEEEETTEEEEEEEEEETTSGGG-----------HHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccccccccccc--cccccccccccccccccccccccc-----------cccccc
Confidence            5899999999999999999976643332222222222  222222 12345889999997642           112223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ...++|++++|++.+++-+-.. ..++..+......  ..|++++.||.|...
T Consensus        68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~--~~~iivvg~K~D~~~  118 (162)
T PF00071_consen   68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPE--DIPIIVVGNKSDLSD  118 (162)
T ss_dssp             HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTT--TSEEEEEEETTTGGG
T ss_pred             cccccccccccccccccccccccccccccccccccc--cccceeeeccccccc
Confidence            4677899999999974422222 3455555554432  249999999999776

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.51  E-value=5.2e-13  Score=105.50  Aligned_cols=120  Identities=15%  Similarity=0.184  Sum_probs=80.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccc---ccc-----------------CCCCceeEEEeeEEEEeeCCceEEEEeC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAF---KAS-----------------AGSSGVTITCEMKTTVLKDGQVVNVIDT   76 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~---~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   76 (170)
                      ....+|+|+|..|+|||||+++|+.....   .+.                 ....+.+.......+.+ .+..+.++||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT   86 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT   86 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence            45679999999999999999998631110   000                 00123334444455666 6788999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ||+.++.       .+.    ...+..+|++++|+|+.++.......+++.....   .  .|+++++||+|....+
T Consensus        87 PG~~df~-------~~~----~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~---~--iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         87 PGHEDFS-------EDT----YRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR---D--TPIFTFINKLDRDGRE  147 (526)
T ss_pred             CCchhhH-------HHH----HHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCcccccC
Confidence            9997642       112    2234567999999999877777666666554432   2  4999999999987653

>PRK13351 elongation factor G; Reviewed

Probab=99.51  E-value=4.3e-13  Score=109.64  Aligned_cols=119  Identities=19%  Similarity=0.229  Sum_probs=83.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccc---cc----c---------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAF---KA----S---------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF   80 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~---~~----~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   80 (170)
                      ....+|+++|..|+|||||+++|+.....   ..    +         ....+.|.........| .+..+.++||||+.
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~   84 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHI   84 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcH
Confidence            45689999999999999999999743210   00    0         00133455555556666 68899999999997


Q ss_pred             CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ++           ......+...+|++++|+|+.++........++.+...   .  .|+++++||+|....
T Consensus        85 df-----------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~~~  140 (687)
T PRK13351         85 DF-----------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY---G--IPRLIFINKMDRVGA  140 (687)
T ss_pred             HH-----------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCCCCCC
Confidence            53           22233445677999999999877777766666655443   2  489999999998876

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.50  E-value=5e-13  Score=106.85  Aligned_cols=116  Identities=21%  Similarity=0.210  Sum_probs=75.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEE--EEee---------------CCceEEEEeCCCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKT--TVLK---------------DGQVVNVIDTPGL   79 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~---------------~~~~~~l~DtpG~   79 (170)
                      .+.+.|+++|.+++|||||+++|.+.........  +.|.......  ....               .-..+.++||||+
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g--~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAG--GITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCC--ceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            3457899999999999999999988654322221  1111111110  0000               0012789999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      ..|.           .........+|++++|+|+++++..+....+..+...   .  .|+++++||+|..
T Consensus        82 e~f~-----------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~---~--vpiIvviNK~D~~  136 (586)
T PRK04004         82 EAFT-----------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR---K--TPFVVAANKIDRI  136 (586)
T ss_pred             HHHH-----------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcCCc
Confidence            7641           1222344677999999999877777777666655442   2  4899999999985

>PRK09866 hypothetical protein; Provisional

Probab=99.50  E-value=8.3e-13  Score=104.43  Aligned_cols=85  Identities=18%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239           69 QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      ..++++||||+..+..  ......+.+    ....+|+++||+|+....+..+..+++.+.+. ++.  .|+++|+||+|
T Consensus       230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID  300 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD  300 (741)
T ss_pred             CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence            5688999999986422  112223333    35677999999999877888888888877764 211  38999999999


Q ss_pred             CCCCC---hhhHHHHhh
Q 046239          149 YLEDN---EKTLEDYLG  162 (170)
Q Consensus       149 ~~~~~---~~~~~~~~~  162 (170)
                      ..+..   .+.+.++++
T Consensus       301 l~dreeddkE~Lle~V~  317 (741)
T PRK09866        301 QQDRNSDDADQVRALIS  317 (741)
T ss_pred             CCCcccchHHHHHHHHH
Confidence            87521   245666654

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.50  E-value=1e-12  Score=93.11  Aligned_cols=121  Identities=16%  Similarity=0.079  Sum_probs=70.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHH-HhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGN-SILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      ......+++++|++|+|||||++ .+.|.... ....+.+............ ....+.++||+|...+           
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~-~~i~i~~~Dt~g~~~~-----------   71 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEK-KYIPTLGVEVHPLKFYTNC-GPICFNVWDTAGQEKF-----------   71 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECC-eEEEEEEEECCCchhh-----------
Confidence            34455799999999999999996 45554321 1122222221111111111 2356789999997643           


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ......+....+++++|++.+++.+... ..++..+.... +.  .|++++.||+|..+
T Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~--~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-EN--IPIVLVGNKVDVKD  127 (215)
T ss_pred             hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccCcc
Confidence            1112234456799999999975544332 23333343332 22  48899999999754

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.49  E-value=4.7e-13  Score=93.74  Aligned_cols=111  Identities=15%  Similarity=0.035  Sum_probs=68.9

Q ss_pred             EcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCC
Q 046239           25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGG  103 (170)
Q Consensus        25 vG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (170)
                      +|.+|+|||||++.++..........+.+.  ......+.+. ....+.+|||+|...+           ..+...++.+
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~--~~~~~~~~~~~~~~~l~iwDt~G~e~~-----------~~l~~~~~~~   67 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGV--EVHPLVFHTNRGPIRFNVWDTAGQEKF-----------GGLRDGYYIQ   67 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeE--EEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhHHHhcC
Confidence            699999999999999864432111111111  1111222221 2357889999999753           3333446778


Q ss_pred             ccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239          104 IHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus       104 ~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ++++++|+|+.++.+... ..++..+.+.. .  ..|+++|.||+|+..
T Consensus        68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~~  113 (200)
T smart00176       68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVC-E--NIPIVLCGNKVDVKD  113 (200)
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccccc
Confidence            899999999985544433 23444454432 2  249999999999753

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=3.6e-13  Score=91.04  Aligned_cols=123  Identities=23%  Similarity=0.191  Sum_probs=77.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...+++|+|.+++|||||+-.............+.+..-..+.....- ....+.+|||.|...           +..++
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~-~~ikfeIWDTAGQER-----------y~sla   71 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD-NTIKFEIWDTAGQER-----------YHSLA   71 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC-cEEEEEEEEcCCccc-----------ccccc
Confidence            457899999999999999966654433221122222111111111110 235677999999985           44555


Q ss_pred             HhccCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQE-EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE  154 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (170)
                      ..++++++++|+|+|+++.-+.. .+.++..|++..+..  .-+.+|.||+|+.....
T Consensus        72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~  127 (200)
T KOG0092|consen   72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERRE  127 (200)
T ss_pred             cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhccc
Confidence            57889999999999998443332 245666666655432  25667999999887443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.1e-12  Score=88.86  Aligned_cols=121  Identities=18%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEE--eeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITC--EMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      ....+++++|..++||||||+..+-.....    +...|+..  ....+.+. .-.++.+|||.|+.           ++
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~----~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE-----------RF   84 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDN----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RF   84 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcc----cccceeeeEEEEEEEEEcCcEEEEEEEecccHH-----------HH
Confidence            334789999999999999999998654322    22223222  22333331 23467899999997           46


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +.++..+.+.+.++++|+|+.+.-+.++ .++++.+....+.. ...+++|.||.|+.+..
T Consensus        85 rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkr  144 (221)
T KOG0094|consen   85 RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKR  144 (221)
T ss_pred             hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchh
Confidence            7778888899999999999986665554 56666666655442 13789999999998774

>cd01882 BMS1 Bms1

Probab=99.48  E-value=2e-12  Score=92.26  Aligned_cols=114  Identities=16%  Similarity=0.133  Sum_probs=76.5

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      ....++..|+++|++|+|||||+|.|++.......... .++.  ..  ... .+..+.++||||..          ..+
T Consensus        34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~-~g~i--~i--~~~-~~~~i~~vDtPg~~----------~~~   97 (225)
T cd01882          34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDI-KGPI--TV--VTG-KKRRLTFIECPNDI----------NAM   97 (225)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccc-cccE--EE--Eec-CCceEEEEeCCchH----------HHH
Confidence            34677889999999999999999999875322111111 1111  11  111 56788999999753          233


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~  152 (170)
                      ...+    ..+|++++++|+...+...+..+++.+...   +  .| +++|+||+|.+..
T Consensus        98 l~~a----k~aDvVllviDa~~~~~~~~~~i~~~l~~~---g--~p~vi~VvnK~D~~~~  148 (225)
T cd01882          98 IDIA----KVADLVLLLIDASFGFEMETFEFLNILQVH---G--FPRVMGVLTHLDLFKK  148 (225)
T ss_pred             HHHH----HhcCEEEEEEecCcCCCHHHHHHHHHHHHc---C--CCeEEEEEeccccCCc
Confidence            3332    456999999999877887777777766553   1  25 5569999998854

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.48  E-value=4.9e-13  Score=95.08  Aligned_cols=125  Identities=16%  Similarity=0.148  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|+.||||||..+.+.....+... ...+.|.......+.......+.+||+||...+....      +.......
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence            5899999999999999999977655442 3445666666566654356689999999998652210      00111223


Q ss_pred             cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..++++++||+|+. +.+...-..+.+.+..........++.|++.|+|.+.+
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~  126 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE  126 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence            57789999999997 44333323333333333322333489999999999866

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=9.8e-13  Score=90.29  Aligned_cols=123  Identities=19%  Similarity=0.138  Sum_probs=87.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      +...-.+++++|.+|+|||+++-.++..........+.+  +......+.+. ....+++|||.|...           +
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiG--IDFk~kti~l~g~~i~lQiWDtaGQer-----------f   74 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIG--IDFKIKTIELDGKKIKLQIWDTAGQER-----------F   74 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEE--EEEEEEEEEeCCeEEEEEEEEcccchh-----------H
Confidence            556678999999999999999988886554333222222  22333344431 234688999999984           5


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQE-EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......++++++.+++|+|+.+.-+-+ ...+++.+.+...+.+  +.++|.||+|.-..
T Consensus        75 ~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~  132 (207)
T KOG0078|consen   75 RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK  132 (207)
T ss_pred             HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc
Confidence            666677888999999999997444443 2458888888776654  99999999997663

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.47  E-value=6.7e-13  Score=102.31  Aligned_cols=121  Identities=15%  Similarity=0.203  Sum_probs=74.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccc-cCCCCceeEEEeeEEEE--------------e-----------eCCce
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTITCEMKTTV--------------L-----------KDGQV   70 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~   70 (170)
                      .+..+|+++|..++|||||+++|++...... .....+.|.........              .           .....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            3567899999999999999999987532110 11112233222211100              0           01357


Q ss_pred             EEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCCC
Q 046239           71 VNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDY  149 (170)
Q Consensus        71 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~  149 (170)
                      +.++||||+.+           +...+......+|++++|+|++++. ..+..+.+..+.. ++.   +++++++||+|+
T Consensus        82 i~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl  146 (406)
T TIGR03680        82 VSFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDL  146 (406)
T ss_pred             EEEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEcccc
Confidence            89999999864           2222333345679999999998665 4445555554432 221   479999999998


Q ss_pred             CCC
Q 046239          150 LED  152 (170)
Q Consensus       150 ~~~  152 (170)
                      ...
T Consensus       147 ~~~  149 (406)
T TIGR03680       147 VSK  149 (406)
T ss_pred             CCH
Confidence            865

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.47  E-value=1.5e-12  Score=104.39  Aligned_cols=118  Identities=20%  Similarity=0.222  Sum_probs=76.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccc----c---------CCCCceeEEEeeEEEEee----CCceEEEEeCCCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA----S---------AGSSGVTITCEMKTTVLK----DGQVVNVIDTPGLFD   81 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~----~---------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~~~   81 (170)
                      -++|+++|..++|||||+++|+.......    +         ....+.|.........|.    ....+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            36899999999999999999976421100    0         011244544443334331    125689999999986


Q ss_pred             CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      |           ...+..+...+|++++|+|++++.+.++...+....+   ..  .|+++|+||+|+...
T Consensus        83 F-----------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~  137 (595)
T TIGR01393        83 F-----------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSA  137 (595)
T ss_pred             H-----------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCcc
Confidence            3           2222334556799999999987777666544433322   12  489999999998654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=3.2e-12  Score=86.08  Aligned_cols=121  Identities=16%  Similarity=0.096  Sum_probs=84.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...++.++|.+|+|||.|+...+..........+.+..-......++- ....+.+|||.|+..           +.+..
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~-k~IKlqiwDtaGqe~-----------frsv~   72 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDG-KQIKLQIWDTAGQES-----------FRSVT   72 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcC-ceEEEEEEecCCcHH-----------HHHHH
Confidence            456889999999999999999997765444343433333333344433 456789999999984           56666


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +.+++.+..+|+|+|++.+-+... ..++..+++...+.  ..++++.||+|+...
T Consensus        73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~r  126 (216)
T KOG0098|consen   73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEAR  126 (216)
T ss_pred             HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhcc
Confidence            678889999999999985544443 35556666654222  267889999997654

>cd04129 Rho2 Rho2 subfamily

Probab=99.46  E-value=1.5e-12  Score=90.38  Aligned_cols=114  Identities=17%  Similarity=0.123  Sum_probs=68.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+++++|++|+|||||++.++......... .  ...........+ .+  ..+.++||+|...+....           
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~--t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~-----------   66 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYH-P--TVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLR-----------   66 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccC-C--cccceEEEEEEE-CCEEEEEEEEECCCChhccccc-----------
Confidence            479999999999999999998543322111 1  111111112222 22  346789999986532110           


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ......+++++++++++..-+...  ..++..+.....   ..|+++|.||+|+..
T Consensus        67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~  119 (187)
T cd04129          67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQ  119 (187)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhh
Confidence            123467899999999874322222  234555544332   259999999999754

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=2.3e-12  Score=83.83  Aligned_cols=121  Identities=16%  Similarity=0.123  Sum_probs=85.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      -++|+++|..|+|||.|++..+....+.+...+.+..-......+.- .+..+.+|||.|...           +++...
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~g-ekiklqiwdtagqer-----------frsitq   74 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNG-EKIKLQIWDTAGQER-----------FRSITQ   74 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECC-eEEEEEEeeccchHH-----------HHHHHH
Confidence            46899999999999999999987655444333333333333233322 356789999999974           566666


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .+++.+|+++++.|++...+... .+++..+.+....++  -.|+|.||.|+-+..
T Consensus        75 syyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~drr  128 (213)
T KOG0095|consen   75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADRR  128 (213)
T ss_pred             HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhhh
Confidence            67888899999999985555543 567777777765554  568999999977653

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.45  E-value=1.8e-12  Score=100.03  Aligned_cols=122  Identities=15%  Similarity=0.223  Sum_probs=76.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccc-cccCCCCceeEEEeeEEEEe--------------e-----------CCc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTITCEMKTTVL--------------K-----------DGQ   69 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~--------------~-----------~~~   69 (170)
                      .++..+|+++|..++|||||+.+|++.... .......+.|.........+              .           ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            456689999999999999999999875211 11122234444332211111              0           025


Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239           70 VVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      .+.++||||+.+           +..........+|++++|+|+.++. .......+..+.. .+   .+++++|+||+|
T Consensus        86 ~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVlNK~D  150 (411)
T PRK04000         86 RVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQNKID  150 (411)
T ss_pred             EEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEEeec
Confidence            789999999753           2222223345679999999998665 4555555554433 22   137899999999


Q ss_pred             CCCC
Q 046239          149 YLED  152 (170)
Q Consensus       149 ~~~~  152 (170)
                      +.+.
T Consensus       151 l~~~  154 (411)
T PRK04000        151 LVSK  154 (411)
T ss_pred             cccc
Confidence            9865

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.45  E-value=1.1e-12  Score=86.33  Aligned_cols=122  Identities=14%  Similarity=0.047  Sum_probs=79.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .....+|+++|.+|+|||||+-+.+....-+....+.+..-......++- ....+.+|||.|...           ++.
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqEr-----------FRt   75 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQER-----------FRT   75 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchHh-----------hhc
Confidence            34458999999999999999988876544222222334443344344432 455788999999985           444


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      +...+++++..+|+|.|++.+-+.... .++.++.-.-. ....-.++|.||.|+-
T Consensus        76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst-n~diikmlVgNKiDke  130 (209)
T KOG0080|consen   76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYST-NPDIIKMLVGNKIDKE  130 (209)
T ss_pred             cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcC-CccHhHhhhcccccch
Confidence            445678899999999999755444332 34444444322 2223458899999965

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.44  E-value=5.7e-13  Score=101.80  Aligned_cols=131  Identities=22%  Similarity=0.210  Sum_probs=91.1

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEee-EEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM-KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      +.-.+..+++|+|.+++|||||+|.++....   ...+...|+..-. ..+++ ....|+++||||+.+.... +....+
T Consensus       163 sIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plE-drN~IE  237 (620)
T KOG1490|consen  163 AIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEE-DRNIIE  237 (620)
T ss_pred             CCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhh-heeeeeecCCccccCcchh-hhhHHH
Confidence            3455667899999999999999999987553   3445555555443 33334 6789999999999974332 333344


Q ss_pred             HHHHHHhccCCccEEEEEEeCC--CCCCHH-HHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSAR--NRFSQE-EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~--~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +......+ +-..++||++|++  .+.+-. ...+.+.+..+|.++   ++|+|+||+|.+...
T Consensus       238 mqsITALA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~e  297 (620)
T KOG1490|consen  238 MQIITALA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRPE  297 (620)
T ss_pred             HHHHHHHH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCcc
Confidence            44433333 3335689999987  344544 467888899988765   899999999988663

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.43  E-value=3.7e-12  Score=102.24  Aligned_cols=120  Identities=21%  Similarity=0.242  Sum_probs=77.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccc----c---------CCCCceeEEEeeEEEEee----CCceEEEEeCCCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA----S---------AGSSGVTITCEMKTTVLK----DGQVVNVIDTPGL   79 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~----~---------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~   79 (170)
                      ..-++++++|..++|||||+.+|+.......    +         ....+.|.........|.    ....+.+|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            3457899999999999999999875321100    0         112244444333333331    2457899999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+|.       .+    +..+...+|++++|+|+.++.+..+...+....+   ..  .|+++|+||+|+...
T Consensus        85 ~dF~-------~~----v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~--lpiIvViNKiDl~~a  141 (600)
T PRK05433         85 VDFS-------YE----VSRSLAACEGALLVVDASQGVEAQTLANVYLALE---ND--LEIIPVLNKIDLPAA  141 (600)
T ss_pred             HHHH-------HH----HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CC--CCEEEEEECCCCCcc
Confidence            8631       12    2234456799999999987777666555444332   12  489999999998654

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.8e-12  Score=88.86  Aligned_cols=123  Identities=17%  Similarity=0.086  Sum_probs=85.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....-++|+++|.+|+|||-|+...+..........+.+.........++- +-....+|||.|+..           ++
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~-k~vkaqIWDTAGQER-----------yr   77 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG-KTVKAQIWDTAGQER-----------YR   77 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC-cEEEEeeecccchhh-----------hc
Confidence            344557899999999999999999887665444344444333333222321 234678999999985           44


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .....+++++.++++|+|++.+.+.+. .+++++|++.....  .++++|.||+|+-.
T Consensus        78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~  133 (222)
T KOG0087|consen   78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNH  133 (222)
T ss_pred             cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhh
Confidence            455567899999999999986655553 45566666654333  48899999999865

>PTZ00416 elongation factor 2; Provisional

Probab=99.43  E-value=1.8e-12  Score=107.61  Aligned_cols=119  Identities=17%  Similarity=0.203  Sum_probs=81.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc--------------cCCCCceeEEEeeEEEEee---------CCceEE
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTITCEMKTTVLK---------DGQVVN   72 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~---------~~~~~~   72 (170)
                      ...-++|+++|..++|||||+++|+.......              .....+.|.........|.         .+..+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            45567999999999999999999986321110              0111223333222233331         145689


Q ss_pred             EEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        73 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      ++||||+.++           ..........+|++++|+|+.+++..++...++.+.+.   +  .|+++++||+|+.
T Consensus        96 liDtPG~~~f-----------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~---~--~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDF-----------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE---R--IRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhH-----------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc---C--CCEEEEEEChhhh
Confidence            9999999862           22234456778999999999988888888777766653   2  4899999999987

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.43  E-value=5.1e-12  Score=89.60  Aligned_cols=120  Identities=16%  Similarity=0.147  Sum_probs=77.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|+.|+|||||++++.+........... .................+.+|||+|+.+           +...+..
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-----------~~~~~~~   73 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTI-GNLDPAKTIEPYRRNIKLQLWDTAGQEE-----------YRSLRPE   73 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCce-eeeeEEEEEEeCCCEEEEEeecCCCHHH-----------HHHHHHH
Confidence            799999999999999999999876543222111 1111111111110134588999999984           4455666


Q ss_pred             ccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239          100 AKGGIHAVLVVFSARN--RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +..++++++++++...  ........+...+......  ..|+++|.||+|+....
T Consensus        74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~~  127 (219)
T COG1100          74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDEQ  127 (219)
T ss_pred             HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccch
Confidence            7789999999999863  2222223444444554322  24999999999998773

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.42  E-value=1.9e-12  Score=94.32  Aligned_cols=89  Identities=20%  Similarity=0.304  Sum_probs=64.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEE-EeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTIT-CEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..-.++++|++.+|||||+|.|++......   ..+.|+. +...-..+ ++-.++++|+||+.+........+.+.+..
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva---~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~vlsv  137 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVA---DYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQVLSV  137 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCcccc---ccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcceeeee
Confidence            345799999999999999999999765322   2233333 33333334 889999999999988766666556666644


Q ss_pred             HHhccCCccEEEEEEeCC
Q 046239           97 IGLAKGGIHAVLVVFSAR  114 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~  114 (170)
                          .+++|++++|+|+.
T Consensus       138 ----~R~ADlIiiVld~~  151 (365)
T COG1163         138 ----ARNADLIIIVLDVF  151 (365)
T ss_pred             ----eccCCEEEEEEecC
Confidence                45669999999986

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.41  E-value=6.5e-12  Score=84.90  Aligned_cols=108  Identities=23%  Similarity=0.208  Sum_probs=67.4

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +|+++|.+|+|||||++.++....... ..+....  . ...+.+ .+  ..+.++||+|....                
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~--~-~~~i~~-~~~~~~l~i~D~~g~~~~----------------   60 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGR--F-KKEVLV-DGQSHLLLIRDEGGAPDA----------------   60 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccc--e-EEEEEE-CCEEEEEEEEECCCCCch----------------
Confidence            689999999999999988765432211 1111111  1 122333 33  45789999999631                


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      .+...+|++++|+|.+++-+... ..+++.+..... ....|+++|.||+|+.
T Consensus        61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~  112 (158)
T cd04103          61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS  112 (158)
T ss_pred             hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence            12356799999999986554444 345555544321 1224899999999964

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.40  E-value=7.3e-12  Score=100.46  Aligned_cols=114  Identities=22%  Similarity=0.232  Sum_probs=72.4

Q ss_pred             cCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCcc
Q 046239           26 GRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIH  105 (170)
Q Consensus        26 G~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (170)
                      |.+|+|||||+|+++|.... . ...++.|.........+ .+..+.++||||+.++......  +++.... .....+|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~-v-~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~-l~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQT-V-GNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLE--EEVARDY-LLNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCe-e-cCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchH--HHHHHHH-HhhcCCC
Confidence            88999999999999987642 2 22445666555555655 6678999999999876432211  1111111 1235789


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          106 AVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       106 ~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ++++|+|+++ ++. .......+.+   ..  .|+++++||+|+.+.
T Consensus        75 vvI~VvDat~-ler-~l~l~~ql~~---~~--~PiIIVlNK~Dl~~~  114 (591)
T TIGR00437        75 LVVNVVDASN-LER-NLYLTLQLLE---LG--IPMILALNLVDEAEK  114 (591)
T ss_pred             EEEEEecCCc-chh-hHHHHHHHHh---cC--CCEEEEEehhHHHHh
Confidence            9999999873 322 2222222222   22  599999999998644

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.3e-11  Score=92.69  Aligned_cols=133  Identities=20%  Similarity=0.270  Sum_probs=91.6

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCc---cc--------------------------cccCCCCceeEEEeeEEEEe
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRK---AF--------------------------KASAGSSGVTITCEMKTTVL   65 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~---~~--------------------------~~~~~~~~~t~~~~~~~~~~   65 (170)
                      ..++..+++++|...+|||||+-.|+-..   ..                          ..+.+..+.|.......+..
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            45778899999999999999997765221   00                          00112356676666666665


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccc
Q 046239           66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFD  138 (170)
Q Consensus        66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~  138 (170)
                       ....+.++|+||+-+       ....++    ....++|+.++|+++..+       ...+.++.+- |...+|-   .
T Consensus        83 -~k~~~tIiDaPGHrd-------FvknmI----tGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~tlGi---~  146 (428)
T COG5256          83 -DKYNFTIIDAPGHRD-------FVKNMI----TGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LARTLGI---K  146 (428)
T ss_pred             -CCceEEEeeCCchHH-------HHHHhh----cchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHhcCC---c
Confidence             667899999999764       233333    455777999999999754       3444444332 3333442   4


Q ss_pred             eEEEEEEcCCCCCCChhhHHHHhhh
Q 046239          139 YMIVVFTGGDYLEDNEKTLEDYLGH  163 (170)
Q Consensus       139 ~~ivv~tk~D~~~~~~~~~~~~~~~  163 (170)
                      .+||++||+|.+..+++++++...+
T Consensus       147 ~lIVavNKMD~v~wde~rf~ei~~~  171 (428)
T COG5256         147 QLIVAVNKMDLVSWDEERFEEIVSE  171 (428)
T ss_pred             eEEEEEEcccccccCHHHHHHHHHH
Confidence            8999999999999988888877654

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.37  E-value=1.4e-11  Score=95.95  Aligned_cols=120  Identities=18%  Similarity=0.227  Sum_probs=78.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc---c-----------c---------------ccCCCCceeEEEeeEEEEe
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKA---F-----------K---------------ASAGSSGVTITCEMKTTVL   65 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~---~-----------~---------------~~~~~~~~t~~~~~~~~~~   65 (170)
                      ..++..+++++|..++|||||+.+|+....   .           .               ......+.|.......+.+
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            356778999999999999999987752110   0           0               0122345666666666666


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhcccccc
Q 046239           66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-FS------QEEEAAVHRLPTLFGKKIFD  138 (170)
Q Consensus        66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~------~~~~~~~~~l~~~~~~~~~~  138 (170)
                       .+..+.++||||+.+           +..........+|++++|+|+.++ +.      .+..+.+..+.. ++-   +
T Consensus        83 -~~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~  146 (447)
T PLN00043         83 -TKYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---K  146 (447)
T ss_pred             -CCEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---C
Confidence             678899999999974           333334456788999999999754 22      233333333222 221   3


Q ss_pred             eEEEEEEcCCCC
Q 046239          139 YMIVVFTGGDYL  150 (170)
Q Consensus       139 ~~ivv~tk~D~~  150 (170)
                      ++++++||+|..
T Consensus       147 ~iIV~vNKmD~~  158 (447)
T PLN00043        147 QMICCCNKMDAT  158 (447)
T ss_pred             cEEEEEEcccCC
Confidence            689999999976

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.37  E-value=1.1e-12  Score=107.45  Aligned_cols=120  Identities=18%  Similarity=0.251  Sum_probs=78.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc--------------ccccCCCCceeEEEee----EEEEeeCCceEEEEeC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKA--------------FKASAGSSGVTITCEM----KTTVLKDGQVVNVIDT   76 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~--------------~~~~~~~~~~t~~~~~----~~~~~~~~~~~~l~Dt   76 (170)
                      ......+|+++|..++|||||++.|+....              ........+.|.....    ..+.+ .+..+.++||
T Consensus        15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDT   93 (720)
T TIGR00490        15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDT   93 (720)
T ss_pred             CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeC
Confidence            445568999999999999999999863210              0000111223332221    12334 5678999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ||+.++.       .+    .......+|++++|+|+.++....+...++.+.+.   .  .|.++++||+|...
T Consensus        94 PG~~~f~-------~~----~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~  152 (720)
T TIGR00490        94 PGHVDFG-------GD----VTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE---N--VKPVLFINKVDRLI  152 (720)
T ss_pred             CCccccH-------HH----HHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc---C--CCEEEEEEChhccc
Confidence            9998742       12    22345667999999999877777766666554332   2  37789999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.35  E-value=4e-12  Score=105.74  Aligned_cols=120  Identities=18%  Similarity=0.208  Sum_probs=81.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc--------------CCCCceeEEEeeEEEEee--------------
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTITCEMKTTVLK--------------   66 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~--------------   66 (170)
                      ....-++|+++|+.++|||||+.+|+........              ....+.|.........|.              
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            4556689999999999999999998754321000              011223333322333331              


Q ss_pred             -CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEE
Q 046239           67 -DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFT  145 (170)
Q Consensus        67 -~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t  145 (170)
                       .+..+.++||||+.+|           ..........+|++++|+|+.+++.......++.+...   +  .|+++++|
T Consensus        95 ~~~~~inliDtPGh~dF-----------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~--~p~i~~iN  158 (843)
T PLN00116         95 GNEYLINLIDSPGHVDF-----------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---R--IRPVLTVN  158 (843)
T ss_pred             CCceEEEEECCCCHHHH-----------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---C--CCEEEEEE
Confidence             1456789999999862           22223445677999999999888888887777766553   2  48999999


Q ss_pred             cCCCC
Q 046239          146 GGDYL  150 (170)
Q Consensus       146 k~D~~  150 (170)
                      |+|.+
T Consensus       159 K~D~~  163 (843)
T PLN00116        159 KMDRC  163 (843)
T ss_pred             CCccc
Confidence            99988

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=4.2e-12  Score=87.37  Aligned_cols=131  Identities=15%  Similarity=0.208  Sum_probs=80.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      ..++++|+++||||+|+-.|......     ..-.........+.+ +.....++|.||+..       ....+.....-
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~-----~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~~  105 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHR-----GTVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLKH  105 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCcc-----CeeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence            67899999999999999666543211     111112222222333 456689999999985       22333332221


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccceEEEEEEcCCCCCCChhhHHHHhhhcCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK----KIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKP  168 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~~~~~  168 (170)
                       ...+.+++||+|.. -+...-+...+.+...+.+    .-..|+++..||.|+...   .-.+.++++.+++
T Consensus       106 -~~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA---kt~~~Ir~~LEkE  173 (238)
T KOG0090|consen  106 -NYSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA---KTAEKIRQQLEKE  173 (238)
T ss_pred             -cccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc---CcHHHHHHHHHHH
Confidence             13678899999986 5555555555665555533    223489999999999987   3444444444433

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.32  E-value=1.8e-11  Score=79.56  Aligned_cols=117  Identities=19%  Similarity=0.166  Sum_probs=76.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ...+|+|.+|+|||+|+-.............+.+.  ...+...+.. ....++||||.|..           .++.+..
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGv--DfkirTv~i~G~~VkLqIwDtAGqE-----------rFrtits   75 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGV--DFKIRTVDINGDRVKLQIWDTAGQE-----------RFRTITS   75 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeee--eEEEEEeecCCcEEEEEEeecccHH-----------HHHHHHH
Confidence            35688999999999999777654331111222222  2233344441 23568899999997           3556666


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .++.++|++++|+|+...-+... +++++.+++..   ..-|-++|.||+|..+.
T Consensus        76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc---dsv~~vLVGNK~d~~~R  127 (198)
T KOG0079|consen   76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC---DSVPKVLVGNKNDDPER  127 (198)
T ss_pred             HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC---ccccceecccCCCCccc
Confidence            78899999999999975444333 45555555543   23488999999998755

>cd01900 YchF YchF subfamily

Probab=99.31  E-value=1.8e-11  Score=89.19  Aligned_cols=86  Identities=21%  Similarity=0.254  Sum_probs=57.7

Q ss_pred             EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC----------------ceEEEEeCCCCCCCCCC
Q 046239           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG----------------QVVNVIDTPGLFDSSAG   85 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~   85 (170)
                      ++++|.+++|||||+|+|++.....  ...+..|.........+...                ..+.++|+||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~--~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEA--ANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCcc--ccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            5899999999999999999977522  12233443444333333111                14899999999875544


Q ss_pred             chHHHHHHHHHHHhccCCccEEEEEEeC
Q 046239           86 SEFVGKEIVKCIGLAKGGIHAVLVVFSA  113 (170)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~  113 (170)
                      ....+.+++..+    .++|++++|++.
T Consensus        79 ~~glg~~fL~~i----~~~D~li~VV~~  102 (274)
T cd01900          79 GEGLGNKFLSHI----REVDAIAHVVRC  102 (274)
T ss_pred             hhHHHHHHHHHH----HhCCEEEEEEeC
Confidence            445555665544    456999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.31  E-value=3e-11  Score=91.86  Aligned_cols=93  Identities=18%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC----------------CceEEEEeCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD----------------GQVVNVIDTPGL   79 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~   79 (170)
                      ......++|+|.+++|||||+|+|++.....  ...+.+|.........+..                ...+.++||||+
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v--~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL   95 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPA--ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL   95 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccc--cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence            4666789999999999999999999876422  2223444444443333311                124899999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR  114 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (170)
                      ..........+.+++..+    ..+|++++|++..
T Consensus        96 v~ga~~g~gLg~~fL~~I----r~aD~il~VVd~f  126 (390)
T PTZ00258         96 VKGASEGEGLGNAFLSHI----RAVDGIYHVVRAF  126 (390)
T ss_pred             CcCCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence            865444444555555444    4569999999973

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.31  E-value=7e-11  Score=82.52  Aligned_cols=116  Identities=17%  Similarity=0.052  Sum_probs=68.8

Q ss_pred             cEEEEEcCCCCCHHHHHH-HhhCCcccccc-CCCCceeEE----EeeE-------EEEe-eCCceEEEEeCCCCCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGN-SILGRKAFKAS-AGSSGVTIT----CEMK-------TTVL-KDGQVVNVIDTPGLFDSSAG   85 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin-~l~~~~~~~~~-~~~~~~t~~----~~~~-------~~~~-~~~~~~~l~DtpG~~~~~~~   85 (170)
                      .+|+++|.+|+|||||+. .+++....... ......|..    ....       .... .....+.+|||+|....   
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~---   79 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK---   79 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence            589999999999999995 55543211110 001111211    0000       0011 12356889999998631   


Q ss_pred             chHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           86 SEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                             +   ...++.++|++++|+|++++.+....  .+++.+.... .  ..|+++|.||+|+.+
T Consensus        80 -------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~  134 (195)
T cd01873          80 -------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-P--RVPVILVGCKLDLRY  134 (195)
T ss_pred             -------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccc
Confidence                   1   11356889999999999855444433  3455555432 2  249999999999754

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PRK12740 elongation factor G; Reviewed

Probab=99.30  E-value=6.2e-11  Score=96.85  Aligned_cols=112  Identities=22%  Similarity=0.262  Sum_probs=75.9

Q ss_pred             EcCCCCCHHHHHHHhhCCccc---c----cc---------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchH
Q 046239           25 LGRTGNGKSATGNSILGRKAF---K----AS---------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEF   88 (170)
Q Consensus        25 vG~~gsGKSTlin~l~~~~~~---~----~~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~   88 (170)
                      +|+.++|||||++.|+.....   .    .+         ....+.|.......+.+ .+..+.++||||+.++      
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence            599999999999999433211   0    00         01134555555566666 7889999999999752      


Q ss_pred             HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           89 VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                           ...+......+|++++|+|+...........+..+...   +  .|+++|+||+|.....
T Consensus        74 -----~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~---~--~p~iiv~NK~D~~~~~  128 (668)
T PRK12740         74 -----TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY---G--VPRIIFVNKMDRAGAD  128 (668)
T ss_pred             -----HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc---C--CCEEEEEECCCCCCCC
Confidence                 11222334567999999999877776666666655442   2  4899999999988653

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.29  E-value=4.1e-11  Score=93.29  Aligned_cols=123  Identities=14%  Similarity=0.189  Sum_probs=77.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-cCCCCceeEEEeeEEE---------------Eee------------
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTITCEMKTT---------------VLK------------   66 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~~~~t~~~~~~~~---------------~~~------------   66 (170)
                      +..+..+|+++|.-..|||||+.+|+|.....- +....+.|........               .++            
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            456778999999999999999999998653211 1112222322211110               000            


Q ss_pred             -----CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccceE
Q 046239           67 -----DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-FSQEEEAAVHRLPTLFGKKIFDYM  140 (170)
Q Consensus        67 -----~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~  140 (170)
                           ....+.++|+||+.+           +.+.+......+|++++|+++.++ ...+..+.+..+ +.++.   +++
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi---~~i  174 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL---KHI  174 (460)
T ss_pred             cccccccceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC---CcE
Confidence                 124689999999853           333333445677999999999864 455554444433 33332   479


Q ss_pred             EEEEEcCCCCCC
Q 046239          141 IVVFTGGDYLED  152 (170)
Q Consensus       141 ivv~tk~D~~~~  152 (170)
                      ++++||+|+.+.
T Consensus       175 IVvlNKiDlv~~  186 (460)
T PTZ00327        175 IILQNKIDLVKE  186 (460)
T ss_pred             EEEEecccccCH
Confidence            999999998854

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.29  E-value=8.6e-11  Score=83.25  Aligned_cols=34  Identities=26%  Similarity=0.259  Sum_probs=30.6

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++++||||||||||+|.+.|...+..|
T Consensus        25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G   58 (248)
T COG1116          25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG   58 (248)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567889999999999999999999999887766

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.28  E-value=6.9e-12  Score=103.08  Aligned_cols=122  Identities=18%  Similarity=0.248  Sum_probs=78.8

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc----c----------CCCCceeEEEeeEEEEe--e-CCceEEEEe
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKA----S----------AGSSGVTITCEMKTTVL--K-DGQVVNVID   75 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~----~----------~~~~~~t~~~~~~~~~~--~-~~~~~~l~D   75 (170)
                      .....+-++|+++|+.++|||||+.+|+.......    +          ....+.|.........|  . .+..+.++|
T Consensus        14 ~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD   93 (731)
T PRK07560         14 MKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID   93 (731)
T ss_pred             hhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence            34455668999999999999999999874321110    0          00112222222222222  1 245688999


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           76 TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      |||+.+|           ..........+|++++|+|+.++...+....++...+.   +  .|.++++||+|..
T Consensus        94 tPG~~df-----------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~---~--~~~iv~iNK~D~~  152 (731)
T PRK07560         94 TPGHVDF-----------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE---R--VKPVLFINKVDRL  152 (731)
T ss_pred             CCCccCh-----------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc---C--CCeEEEEECchhh
Confidence            9999874           12223344566999999999888887777777764443   2  3679999999976

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.27  E-value=6.7e-11  Score=89.05  Aligned_cols=89  Identities=20%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG----------------QVVNVIDTPGLFDSS   83 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~   83 (170)
                      .+++++|.+++|||||+|+|++.....  ...+.+|.........+...                ..+.++|+||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v--~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEA--ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCee--cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            589999999999999999999977321  12233443333333322111                248999999998754


Q ss_pred             CCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239           84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR  114 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (170)
                      ......+.+++..+    ..+|++++|+++.
T Consensus        81 ~~g~glg~~fL~~i----~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANI----REVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence            44444555555443    4669999999973

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=1.1e-10  Score=76.33  Aligned_cols=121  Identities=17%  Similarity=0.135  Sum_probs=74.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      -.+++++|+.|+|||.|+........-+...-+.+..-...+..+-. +...+.+|||.|..           +++...+
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAGQE-----------rFRSVtR   76 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAGQE-----------RFRSVTR   76 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeecccHH-----------HHHHHHH
Confidence            36899999999999999988775543222111122222222222211 33568899999997           5778888


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .+++++...++|.|+..+-+... ..++...+.+.+..  .-++++.||.|+-...
T Consensus        77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R  130 (214)
T KOG0086|consen   77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPER  130 (214)
T ss_pred             HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhh
Confidence            89999999999999974433332 22333333332222  1356667888865553

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=4.5e-10  Score=72.52  Aligned_cols=128  Identities=16%  Similarity=0.186  Sum_probs=89.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+.+|+.+|-.++||||++..|+-....     ..-.|.......+.+ ....+.++|.-|..           .++.+
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-----~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRpl   77 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPL   77 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCc-----ccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHH
Confidence            44689999999999999999888743321     112233344455555 67788999988886           57888


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCCC-hhhHHHHhhh
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLEDN-EKTLEDYLGH  163 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~-~~~~~~~~~~  163 (170)
                      ++.++.+..++|||+|..++  ..-.+.-+++...++.+  ...+++|+.||-|+.+.. ++++.++++-
T Consensus        78 WrhYy~gtqglIFV~Dsa~~--dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL  145 (180)
T KOG0071|consen   78 WRHYYTGTQGLIFVVDSADR--DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL  145 (180)
T ss_pred             HHhhccCCceEEEEEeccch--hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc
Confidence            88899999999999998754  22223334455555433  223789999999998663 3777777764

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=4.7e-10  Score=86.83  Aligned_cols=120  Identities=18%  Similarity=0.172  Sum_probs=92.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ...+.+.++|.-.-|||||+..|-+......+.  .+.|....-+.+.+.  ....+.|+||||+..|+           
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea--GGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt-----------   69 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA--GGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT-----------   69 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccC--CceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH-----------
Confidence            356899999999999999999999877654433  345655566666653  24789999999998752           


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE  154 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (170)
                      .+=.+-..-.|.++||+++++++.++..+.++.++..   +  -|++|.+||+|+.+.++
T Consensus        70 ~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a---~--vP~iVAiNKiDk~~~np  124 (509)
T COG0532          70 AMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAA---G--VPIVVAINKIDKPEANP  124 (509)
T ss_pred             HHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC---C--CCEEEEEecccCCCCCH
Confidence            1112334556899999999999999998888877775   3  49999999999997754

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=1.1e-10  Score=86.65  Aligned_cols=134  Identities=16%  Similarity=0.237  Sum_probs=91.2

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEee--E----------------EEEe----------
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM--K----------------TTVL----------   65 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~--~----------------~~~~----------   65 (170)
                      +.-...+.|+++|+...||||||+-|+....+.....+.+.|.....  .                ...+          
T Consensus        53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af  132 (532)
T KOG1954|consen   53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF  132 (532)
T ss_pred             cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence            44566789999999999999999999988765332222222211110  0                0000          


Q ss_pred             ---------eC--CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 046239           66 ---------KD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFG  133 (170)
Q Consensus        66 ---------~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~  133 (170)
                               ++  -..+.++||||+.+.....-..+..+-....++..++|.|++++|+. -.++.+..+.+..++.   
T Consensus       133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---  209 (532)
T KOG1954|consen  133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---  209 (532)
T ss_pred             HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---
Confidence                     00  03489999999998766665667778888888999999999999986 2233344455544443   


Q ss_pred             ccccceEEEEEEcCCCCCC
Q 046239          134 KKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       134 ~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..  ..+-||+||+|+++.
T Consensus       210 ~E--dkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  210 HE--DKIRVVLNKADQVDT  226 (532)
T ss_pred             Cc--ceeEEEeccccccCH
Confidence            33  489999999999987

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.24  E-value=4.4e-11  Score=80.49  Aligned_cols=123  Identities=15%  Similarity=0.050  Sum_probs=75.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .-+++.++|.+|+|||||+|.+...........+.+..-......++- ....+++|||.|...|           .++-
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~-~~vtlQiWDTAGQERF-----------qsLg   75 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDD-RSVTLQIWDTAGQERF-----------QSLG   75 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcC-eEEEEEEEecccHHHh-----------hhcc
Confidence            347899999999999999999987654333222222222222222221 3456889999999854           4444


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      ..+++++|+.+++++++..-+.... .+-+.+.......  ---|+||+.||.|.-..
T Consensus        76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~  133 (210)
T KOG0394|consen   76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG  133 (210)
T ss_pred             cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence            5688999999999998743322221 2222222222211  11289999999997553

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=4.2e-10  Score=87.28  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=94.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...++++-++|.-.-|||||+.+|-+...+..+  ..+.|....-+...++.+..++|+||||+-.|           ..
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E--~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF-----------~a  216 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE--AGGITQHIGAFTVTLPSGKSITFLDTPGHAAF-----------SA  216 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhh--cCCccceeceEEEecCCCCEEEEecCCcHHHH-----------HH
Confidence            346789999999999999999999987765543  33566666677777778899999999999853           22


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE  154 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (170)
                      +-.+...-.|.+++|+.++++.-++..+.+...++-     ..|+++.+||+|+...+.
T Consensus       217 MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp~a~p  270 (683)
T KOG1145|consen  217 MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA-----NVPIVVAINKIDKPGANP  270 (683)
T ss_pred             HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCCH
Confidence            223445566889999999989888887777655553     259999999999998754

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=2.4e-10  Score=92.54  Aligned_cols=121  Identities=21%  Similarity=0.224  Sum_probs=89.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCc---ccccc-------------CCCCceeEEEeeEEEEeeCC-ceEEEEeCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRK---AFKAS-------------AGSSGVTITCEMKTTVLKDG-QVVNVIDTPG   78 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~---~~~~~-------------~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG   78 (170)
                      ...-++|+++|+..+|||||..+|+-..   ...+.             ....+.|+........| .+ ..+.++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence            4566899999999999999997765322   11111             11246777777777777 64 8999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +-+|..       +..    +.++-.|++++|+++.++...+....++...+.   .  .|.++++||+|.+..+
T Consensus        86 HVDFt~-------EV~----rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~--vp~i~fiNKmDR~~a~  144 (697)
T COG0480          86 HVDFTI-------EVE----RSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---G--VPRILFVNKMDRLGAD  144 (697)
T ss_pred             ccccHH-------HHH----HHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---C--CCeEEEEECccccccC
Confidence            998642       222    233445999999999989999988888877775   3  4999999999998763

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.24  E-value=5.6e-11  Score=81.89  Aligned_cols=130  Identities=16%  Similarity=0.073  Sum_probs=70.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeE--EEEeeCCceEEEEeCCCCCCCCCCchH----
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMK--TTVLKDGQVVNVIDTPGLFDSSAGSEF----   88 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~~~----   88 (170)
                      ...++..++++|+||+|||||++.|+|...+..|.............  ...+ .....++.+.|.+.......+.    
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~~~q~~~~~~~~t~~~~l~~~  100 (178)
T cd03229          22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL-RRRIGMVFQDFALFPHLTVLENIALG  100 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH-hhcEEEEecCCccCCCCCHHHheeec
Confidence            34578899999999999999999999987654442211111000000  0011 2344556666665532111111    


Q ss_pred             ---HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEEcCC
Q 046239           89 ---VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEA-AVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                         -..+.+..++....+++++++--+ ...++..... +.+.+.+...+  ...+++++||..
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP-~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~  161 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEP-TSALDPITRREVRALLKSLQAQ--LGITVVLVTHDL  161 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCC-cccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence               133445555666778877666333 3366665433 33444443221  026888888863

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.23  E-value=3.9e-10  Score=85.52  Aligned_cols=129  Identities=14%  Similarity=0.156  Sum_probs=78.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC----cccccc----------CCCCc---eeEEEee---EEEEeeC----CceEE
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR----KAFKAS----------AGSSG---VTITCEM---KTTVLKD----GQVVN   72 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~----~~~~~~----------~~~~~---~t~~~~~---~~~~~~~----~~~~~   72 (170)
                      .....|+++||-++|||||||++++.    ...+..          ....|   .|+.+..   .......    ...++
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            34467899999999999999999998    221000          11223   3443333   2222212    26899


Q ss_pred             EEeCCCCCCCCCCchHHHHH--------------HHHHH-----HhccCCccEEEEEE-eCC------CCCCHHHHHHHH
Q 046239           73 VIDTPGLFDSSAGSEFVGKE--------------IVKCI-----GLAKGGIHAVLVVF-SAR------NRFSQEEEAAVH  126 (170)
Q Consensus        73 l~DtpG~~~~~~~~~~~~~~--------------~~~~~-----~~~~~~~~~il~v~-~~~------~~~~~~~~~~~~  126 (170)
                      ++||+|+.........-...              |...+     +....+.+..++|. |.+      +.+...+.++++
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999998643322211111              11111     11233678888887 653      356666778888


Q ss_pred             HHHHHhcccccceEEEEEEcCCCC
Q 046239          127 RLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus       127 ~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      .|++.-     +|+++|+|+.|-.
T Consensus       175 eLk~~~-----kPfiivlN~~dp~  193 (492)
T TIGR02836       175 ELKELN-----KPFIILLNSTHPY  193 (492)
T ss_pred             HHHhcC-----CCEEEEEECcCCC
Confidence            887763     6999999999944

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=1.7e-10  Score=89.92  Aligned_cols=118  Identities=16%  Similarity=0.209  Sum_probs=83.0

Q ss_pred             CCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH
Q 046239           11 KPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV   89 (170)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~   89 (170)
                      +......++.+++++||+|+||||||++|.....-.. .....+.|...       ...+++.++.+|.-.         
T Consensus        61 rtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvs-------gK~RRiTflEcp~Dl---------  124 (1077)
T COG5192          61 RTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVS-------GKTRRITFLECPSDL---------  124 (1077)
T ss_pred             CCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEee-------cceeEEEEEeChHHH---------
Confidence            3445566778888999999999999999987543211 11222223222       156788999988322         


Q ss_pred             HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                       .+++..+..+    |++|++++.+-++..+..++++.+...    ....++-|+||.|++...
T Consensus       125 -~~miDvaKIa----DLVlLlIdgnfGfEMETmEFLnil~~H----GmPrvlgV~ThlDlfk~~  179 (1077)
T COG5192         125 -HQMIDVAKIA----DLVLLLIDGNFGFEMETMEFLNILISH----GMPRVLGVVTHLDLFKNP  179 (1077)
T ss_pred             -HHHHhHHHhh----heeEEEeccccCceehHHHHHHHHhhc----CCCceEEEEeecccccCh
Confidence             3566655554    999999999888888888888877664    235799999999998763

>cd01858 NGP_1 NGP-1

Probab=99.20  E-value=7.5e-11  Score=79.61  Aligned_cols=57  Identities=25%  Similarity=0.308  Sum_probs=40.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      ...+++++|.+|+|||||+|+|.+......+.. ++.|.....  +.  -...++++||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~--~~--~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQY--IT--LMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEE--EE--cCCCEEEEECcCC
Confidence            456889999999999999999999766444332 344544332  22  2356899999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=99.20  E-value=2.2e-10  Score=98.41  Aligned_cols=132  Identities=17%  Similarity=0.199  Sum_probs=84.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcccccc------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC----CchHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA----GSEFV   89 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~~~~   89 (170)
                      +=++|+|++|+||||+++.. |...+-..      ....+.|..     ++|+-....+++||+|.+-...    .....
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHH
Confidence            56899999999999999665 44332211      111222332     3344567788999999774322    12334


Q ss_pred             HHHHHHHHHhc--cCCccEEEEEEeCCCCCC--HH--------HHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhH
Q 046239           90 GKEIVKCIGLA--KGGIHAVLVVFSARNRFS--QE--------EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTL  157 (170)
Q Consensus        90 ~~~~~~~~~~~--~~~~~~il~v~~~~~~~~--~~--------~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~  157 (170)
                      ...++..++..  ...++.+|+++++.+-++  ..        -+..++.+.+.++-.  -|++||+||||++..    +
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~G----F  259 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAG----F  259 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcC----H
Confidence            56666666554  456899999999874332  11        134456666666555  499999999999977    5


Q ss_pred             HHHhhh
Q 046239          158 EDYLGH  163 (170)
Q Consensus       158 ~~~~~~  163 (170)
                      ++|+..
T Consensus       260 ~~~f~~  265 (1169)
T TIGR03348       260 EEFFAD  265 (1169)
T ss_pred             HHHHHh
Confidence            666554

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=4.4e-10  Score=73.13  Aligned_cols=119  Identities=13%  Similarity=0.082  Sum_probs=73.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEE-eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV-LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..+++++|.+.+|||||+.+-++......-.++.+..-..  ..+. ......+.+|||.|...           .+...
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKv--KTvyr~~kRiklQiwDTagqEr-----------yrtiT   87 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV--KTVYRSDKRIKLQIWDTAGQER-----------YRTIT   87 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEE--eEeeecccEEEEEEEecccchh-----------hhHHH
Confidence            3589999999999999999988865433323333332222  1211 11235688999999974           44455


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK-IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~~~  152 (170)
                      ...++++.++|+++|..+.-+...  .-.|+.++-.-. -..++|+|.||||+-.+
T Consensus        88 TayyRgamgfiLmyDitNeeSf~s--vqdw~tqIktysw~naqvilvgnKCDmd~e  141 (193)
T KOG0093|consen   88 TAYYRGAMGFILMYDITNEESFNS--VQDWITQIKTYSWDNAQVILVGNKCDMDSE  141 (193)
T ss_pred             HHHhhccceEEEEEecCCHHHHHH--HHHHHHHheeeeccCceEEEEecccCCccc
Confidence            567889999999999873222222  122222221111 11389999999997655

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.18  E-value=6.9e-11  Score=76.79  Aligned_cols=120  Identities=18%  Similarity=0.110  Sum_probs=82.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+..+.++|--+||||||+|.++......    .-..|.....+.++. ....+.++|.||...           +..
T Consensus        17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~e----dmiptvGfnmrk~tk-gnvtiklwD~gGq~r-----------frs   80 (186)
T KOG0075|consen   17 WKEEMELSLVGLQNSGKTTLVNVIARGQYLE----DMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-----------FRS   80 (186)
T ss_pred             HHheeeEEEEeeccCCcceEEEEEeeccchh----hhcccccceeEEecc-CceEEEEEecCCCcc-----------HHH
Confidence            3456678999999999999999987643311    122333445555554 567789999999984           677


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~  153 (170)
                      ++..+.+++++++||+|+.+ ..... ..-++|.+++...  ...|++|+.||.|..+..
T Consensus        81 mWerycR~v~aivY~VDaad-~~k~~-~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL  138 (186)
T KOG0075|consen   81 MWERYCRGVSAIVYVVDAAD-PDKLE-ASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL  138 (186)
T ss_pred             HHHHHhhcCcEEEEEeecCC-cccch-hhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence            78888899999999999974 22222 1123334444322  224999999999988763

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.17  E-value=4.7e-10  Score=82.90  Aligned_cols=131  Identities=15%  Similarity=0.206  Sum_probs=89.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc-------------------------------CCCCceeEEEeeEEEE
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS-------------------------------AGSSGVTITCEMKTTV   64 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~   64 (170)
                      .+...+++-+|.-.-||||||-.|+-......+                               .+..+.|+...+..+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            455688999999999999999887643211000                               0114566655544444


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239           65 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF  144 (170)
Q Consensus        65 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (170)
                      . .++.+++.||||+.+           +.+.+..-...+|+.++++|+..++..+.++. ..+..+++-   +++++.+
T Consensus        83 T-~KRkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH-s~I~sLLGI---rhvvvAV  146 (431)
T COG2895          83 T-EKRKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDARKGVLEQTRRH-SFIASLLGI---RHVVVAV  146 (431)
T ss_pred             c-ccceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecchhhHHHhHHH-HHHHHHhCC---cEEEEEE
Confidence            4 688999999999975           22222234567799999999987766665432 345555554   4999999


Q ss_pred             EcCCCCCCChhhHHHHhh
Q 046239          145 TGGDYLEDNEKTLEDYLG  162 (170)
Q Consensus       145 tk~D~~~~~~~~~~~~~~  162 (170)
                      ||+|+++.+++.++++..
T Consensus       147 NKmDLvdy~e~~F~~I~~  164 (431)
T COG2895         147 NKMDLVDYSEEVFEAIVA  164 (431)
T ss_pred             eeecccccCHHHHHHHHH
Confidence            999999998766665543

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.15  E-value=3.6e-10  Score=77.48  Aligned_cols=128  Identities=13%  Similarity=0.023  Sum_probs=69.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchH---H--
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEF---V--   89 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---~--   89 (170)
                      ...++..++++|+||+|||||++.|+|...+..|............ .... .....++.+.|.+.......+.   .  
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~-~~~i~~~~q~~~~~~~~tv~~~~~LS~G   99 (173)
T cd03230          22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE-PEEV-KRRIGYLPEEPSLYENLTVRENLKLSGG   99 (173)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc-hHhh-hccEEEEecCCccccCCcHHHHhhcCHH
Confidence            3467789999999999999999999998765443221111100000 0111 2334555666655432111111   1  


Q ss_pred             HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCC
Q 046239           90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      ..+.+..++....+++++++- ++...++.... .+.+.+.++..+   ..+++++||.-
T Consensus       100 ~~qrv~laral~~~p~illlD-EPt~~LD~~~~~~l~~~l~~~~~~---g~tiii~th~~  155 (173)
T cd03230         100 MKQRLALAQALLHDPELLILD-EPTSGLDPESRREFWELLRELKKE---GKTILLSSHIL  155 (173)
T ss_pred             HHHHHHHHHHHHcCCCEEEEe-CCccCCCHHHHHHHHHHHHHHHHC---CCEEEEECCCH
Confidence            223445556667777776653 33336666543 344445444322   26788888853

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.15  E-value=4e-11  Score=80.48  Aligned_cols=63  Identities=32%  Similarity=0.338  Sum_probs=38.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccC------CCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG   85 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   85 (170)
                      +..++++|++|+|||||+|+|.+......+.      .....|+......  +  .....++||||+.++...
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~--l--~~g~~iIDTPGf~~~~l~  103 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP--L--PDGGYIIDTPGFRSFGLW  103 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE--E--TTSEEEECSHHHHT--GC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe--c--CCCcEEEECCCCCccccc
Confidence            4789999999999999999999975433321      1122333333333  2  346799999999876443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.15  E-value=2e-10  Score=79.77  Aligned_cols=133  Identities=15%  Similarity=0.072  Sum_probs=74.6

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH----
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV----   89 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~----   89 (170)
                      -...++.+++++||||||||||++.|.+.+.++.|.................-+.+...++....++....-.+..    
T Consensus        23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap  102 (240)
T COG1126          23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP  102 (240)
T ss_pred             eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence            3566789999999999999999999999998777644332211100000000012233444433333211100000    


Q ss_pred             --------------------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHH
Q 046239           90 --------------------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPT  130 (170)
Q Consensus        90 --------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~  130 (170)
                                                            -.+....+++..-+|++++|-- ++..++++- .+.++.+.+
T Consensus       103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE-PTSALDPElv~EVL~vm~~  181 (240)
T COG1126         103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE-PTSALDPELVGEVLDVMKD  181 (240)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC-CcccCCHHHHHHHHHHHHH
Confidence                                                  2223344455667888877632 233455543 566777777


Q ss_pred             HhcccccceEEEEEEcCCCC
Q 046239          131 LFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus       131 ~~~~~~~~~~ivv~tk~D~~  150 (170)
                      +..++   -+++++||-..+
T Consensus       182 LA~eG---mTMivVTHEM~F  198 (240)
T COG1126         182 LAEEG---MTMIIVTHEMGF  198 (240)
T ss_pred             HHHcC---CeEEEEechhHH
Confidence            65554   689999997654

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.15  E-value=1.5e-09  Score=83.36  Aligned_cols=89  Identities=21%  Similarity=0.182  Sum_probs=56.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEE---------------------e--eCCceEEEEeC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV---------------------L--KDGQVVNVIDT   76 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------~--~~~~~~~l~Dt   76 (170)
                      .+|+++|.+++|||||+|+|++......  ..+..|.........                     +  .....+.++|+
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~--~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIA--NYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccccc--CCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            4799999999999999999998754221  112233222221111                     0  01245789999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239           77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR  114 (170)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (170)
                      ||+..........+.+++..+    ..+|++++|++..
T Consensus        80 aGl~~ga~~g~glg~~fL~~i----r~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDL----RQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence            999764333333455555544    4559999999986

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.15  E-value=1.1e-10  Score=79.98  Aligned_cols=128  Identities=15%  Similarity=0.113  Sum_probs=67.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch-H--HHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-F--VGK   91 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~--~~~   91 (170)
                      ...++..++++|+||+|||||++.|+|...+..|................+ .....++.+.+.+...+..++ .  -..
T Consensus        24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~~  102 (171)
T cd03228          24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQR  102 (171)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccchHHHHhhCHHHH
Confidence            456788999999999999999999999876554422111110000000000 122344444444433111100 1  122


Q ss_pred             HHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCC
Q 046239           92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      +.+..++....+++++++-- +...++.... .+.+.+.++ .+   ..+++++||..
T Consensus       103 ~rl~la~al~~~p~llllDE-P~~gLD~~~~~~l~~~l~~~-~~---~~tii~~sh~~  155 (171)
T cd03228         103 QRIAIARALLRDPPILILDE-ATSALDPETEALILEALRAL-AK---GKTVIVIAHRL  155 (171)
T ss_pred             HHHHHHHHHhcCCCEEEEEC-CCcCCCHHHHHHHHHHHHHh-cC---CCEEEEEecCH
Confidence            33445556667887766643 3336666654 334444443 22   26788888864

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.14  E-value=5.8e-10  Score=77.79  Aligned_cols=120  Identities=23%  Similarity=0.168  Sum_probs=73.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+++++|.+|+|||+|.....+.........+. .+.......++ .....+.++||+|..++.           .+-.
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~pti-ed~y~k~~~v~-~~~~~l~ilDt~g~~~~~-----------~~~~   69 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTI-EDSYRKELTVD-GEVCMLEILDTAGQEEFS-----------AMRD   69 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCc-cccceEEEEEC-CEEEEEEEEcCCCcccCh-----------HHHH
Confidence            4689999999999999997776655432211111 12222222222 134467799999966542           1222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+....|++++|++++++-+.++ ..+.+.+.+..+ ...-|+++|.||+|+...
T Consensus        70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~-~~~~PivlVGNK~Dl~~~  123 (196)
T KOG0395|consen   70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKG-RDDVPIILVGNKCDLERE  123 (196)
T ss_pred             HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCCEEEEEEcccchhc
Confidence            34567799999999986655554 334444423222 222499999999998764

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=2.1e-10  Score=77.34  Aligned_cols=120  Identities=15%  Similarity=0.092  Sum_probs=84.5

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      -...++.+|+++|--+|||||++..|--.+....     -+|.......+.+ ....+.+||.-|...           +
T Consensus        12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~   74 (181)
T KOG0070|consen   12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------L   74 (181)
T ss_pred             ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------c
Confidence            3466778999999999999999977765443222     3455555666666 688999999999964           5


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      +..++.+..+.+++|||+|.+++..-.+  ..+.|...+...  ...|++++.||.|....
T Consensus        75 R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~e--ak~eL~~~l~~~~l~~~~llv~aNKqD~~~a  133 (181)
T KOG0070|consen   75 RPLWKHYFQNTQGLIFVVDSSDRERIEE--AKEELHRMLAEPELRNAPLLVFANKQDLPGA  133 (181)
T ss_pred             ccchhhhccCCcEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence            5566677888999999999975432222  333333333322  23599999999998866

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.13  E-value=2.1e-10  Score=84.82  Aligned_cols=127  Identities=14%  Similarity=0.026  Sum_probs=71.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCce-eEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchH-----
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEF-----   88 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----   88 (170)
                      ...++..++++||||||||||++.|+|...+..|...... .....  ...+ .....++.+.|.+++.-...+.     
T Consensus        27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~-~~~igy~~~~~~~~~~lT~~e~l~~~~  103 (293)
T COG1131          27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKV-RRRIGYVPQEPSLYPELTVRENLEFFA  103 (293)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHH-HhheEEEccCCCCCccccHHHHHHHHH
Confidence            4567789999999999999999999998876544221111 10000  0111 2345677777766542110000     


Q ss_pred             ------------H------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHH
Q 046239           89 ------------V------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTL  131 (170)
Q Consensus        89 ------------~------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~  131 (170)
                                  .                        .++.+..+.....+|+++++ .++..++++.. ..+++.++++
T Consensus       104 ~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL-DEPt~GLDp~~~~~~~~~l~~l  182 (293)
T COG1131         104 RLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL-DEPTSGLDPESRREIWELLREL  182 (293)
T ss_pred             HHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE-CCCCcCCCHHHHHHHHHHHHHH
Confidence                        0                        22233333445666766555 33344666664 4555666665


Q ss_pred             hcccccceEEEEEEcC
Q 046239          132 FGKKIFDYMIVVFTGG  147 (170)
Q Consensus       132 ~~~~~~~~~ivv~tk~  147 (170)
                      ..+.  ..+|++.||.
T Consensus       183 ~~~g--~~tvlissH~  196 (293)
T COG1131         183 AKEG--GVTILLSTHI  196 (293)
T ss_pred             HhCC--CcEEEEeCCc
Confidence            4332  1488888885

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.13  E-value=1.8e-09  Score=76.93  Aligned_cols=108  Identities=19%  Similarity=0.101  Sum_probs=64.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc-cccccCCCCceeEEEeeEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTITCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      .+-..|+++|++++|||||+|.|+|.. .+..+.....+|.....+...+.  .+..+.++||||+.+...........+
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            344689999999999999999999972 33333444456665555544331  257899999999997644330111111


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLP  129 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~  129 (170)
                      .... .  .-.++++|.....  ....+...+..+.
T Consensus        85 ~~l~-~--llss~~i~n~~~~--~~~~~~~~l~~~~  115 (224)
T cd01851          85 FALA-T--LLSSVLIYNSWET--ILGDDLAALMGLL  115 (224)
T ss_pred             HHHH-H--HHhCEEEEeccCc--ccHHHHHHHHHHH
Confidence            1111 1  1347788777654  3334444444443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.13  E-value=5.2e-10  Score=72.34  Aligned_cols=128  Identities=16%  Similarity=0.149  Sum_probs=83.4

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      +...++.+|+++|--++|||||++.|.+.....-. .+.+..+    ....+...-.+.+||.-|.-           .+
T Consensus        12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hlt-pT~GFn~----k~v~~~g~f~LnvwDiGGqr-----------~I   75 (185)
T KOG0074|consen   12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLT-PTNGFNT----KKVEYDGTFHLNVWDIGGQR-----------GI   75 (185)
T ss_pred             CCCcceEEEEEEecCCCcchhHHHHHccCChhhcc-ccCCcce----EEEeecCcEEEEEEecCCcc-----------cc
Confidence            44577889999999999999999999987753321 1222222    22222134678899988886           37


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCChhhHHHHh
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDNEKTLEDYL  161 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~~~~~~~~~  161 (170)
                      +.++.+++.++|.+|||+|..+.-..+  ++-+.+.+++.+  -..-|+.+..||.|++..  ...++.-
T Consensus        76 RpyWsNYyenvd~lIyVIDS~D~krfe--E~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia  141 (185)
T KOG0074|consen   76 RPYWSNYYENVDGLIYVIDSTDEKRFE--EISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIA  141 (185)
T ss_pred             chhhhhhhhccceEEEEEeCCchHhHH--HHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHH
Confidence            788889999999999999975322111  222222232221  122389999999998865  2444443

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.13  E-value=5e-10  Score=83.46  Aligned_cols=37  Identities=30%  Similarity=0.223  Sum_probs=31.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS   51 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~   51 (170)
                      ....+..++++||||||||||++.|+|...++.|...
T Consensus        25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~   61 (338)
T COG3839          25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL   61 (338)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            4566788999999999999999999999987776444

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.12  E-value=1.9e-09  Score=77.30  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=28.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      +..++..++|+||||+|||||+++++|...+..|
T Consensus        26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G   59 (254)
T COG1121          26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG   59 (254)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            4566789999999999999999999997665554

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.12  E-value=1.1e-10  Score=93.09  Aligned_cols=35  Identities=23%  Similarity=0.147  Sum_probs=30.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG   50 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~   50 (170)
                      .+++.+++++|++|||||||++.|+|...+..|..
T Consensus       358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I  392 (529)
T TIGR02868       358 LPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV  392 (529)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            45788999999999999999999999987766543

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.12  E-value=3.3e-10  Score=79.91  Aligned_cols=39  Identities=21%  Similarity=0.191  Sum_probs=32.4

Q ss_pred             CCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           11 KPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ...-...++..++|+||||||||||+|.|.+...+..|.
T Consensus        23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~   61 (226)
T COG1136          23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE   61 (226)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence            334456788999999999999999999999988776553

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=9.7e-10  Score=83.28  Aligned_cols=121  Identities=17%  Similarity=0.198  Sum_probs=86.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh--CCcccccc------------------CCCCceeEEEeeEEEEeeCCceEEEEeC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL--GRKAFKAS------------------AGSSGVTITCEMKTTVLKDGQVVNVIDT   76 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~--~~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   76 (170)
                      ...+.++|+..+.+|||||-..|+  |......|                  ....+.........++| ++..+.|+||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT   88 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT   88 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence            455789999999999999986654  21111111                  01134555566667777 7899999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239           77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE  154 (170)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (170)
                      ||+.+|+.+.-           +.+.-+|..+.|+|+..++.++..++++..+-.   .  -|++-++||+|....++
T Consensus        89 PGHeDFSEDTY-----------RtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR---~--iPI~TFiNKlDR~~rdP  150 (528)
T COG4108          89 PGHEDFSEDTY-----------RTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR---D--IPIFTFINKLDREGRDP  150 (528)
T ss_pred             CCccccchhHH-----------HHHHhhheeeEEEecccCccHHHHHHHHHHhhc---C--CceEEEeeccccccCCh
Confidence            99998753222           123445899999999989999998888765543   2  49999999999876654

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.11  E-value=1.2e-09  Score=78.35  Aligned_cols=127  Identities=17%  Similarity=0.129  Sum_probs=82.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc-CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC---CchHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA---GSEFVGK   91 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~   91 (170)
                      .....++++.|.+++|||+|+|.++........ ...++.|.....+.    -+..++++|.||+..+.-   ....+..
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence            455678999999999999999999987643332 32556666555444    377999999999543211   1111222


Q ss_pred             HHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      -...+..... +.-.++++++++-++.+-|...++++.+.   .  -|+.+|+||||+...
T Consensus       209 ~t~~Y~leR~-nLv~~FLLvd~sv~i~~~D~~~i~~~ge~---~--VP~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  209 FTKSYLLERE-NLVRVFLLVDASVPIQPTDNPEIAWLGEN---N--VPMTSVFTKCDKQKK  263 (320)
T ss_pred             hHHHHHHhhh-hhheeeeeeeccCCCCCCChHHHHHHhhc---C--CCeEEeeehhhhhhh
Confidence            2222222222 22335556676667777888888888775   2  499999999997644

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.11  E-value=3e-10  Score=77.73  Aligned_cols=58  Identities=31%  Similarity=0.402  Sum_probs=42.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      ....+++++|.+|+|||||+|+|++......+. .++.|...+...  +  +..+.++||||+
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~--~--~~~~~l~DtPGi  172 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVH--L--DKKVKLLDSPGI  172 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEE--e--CCCEEEEECcCC
Confidence            344689999999999999999999987654433 345555444332  2  356899999996

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=1.4e-09  Score=84.35  Aligned_cols=130  Identities=19%  Similarity=0.225  Sum_probs=89.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcc---cccc----------CCCCceeEEEeeEEEEeeCC---ceEEEEeCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKA---FKAS----------AGSSGVTITCEMKTTVLKDG---QVVNVIDTPGL   79 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~---~~~~----------~~~~~~t~~~~~~~~~~~~~---~~~~l~DtpG~   79 (170)
                      .++-+++.++..-.-|||||...|+....   ...+          .+..+.|+..+.....| ..   ..+.++||||+
T Consensus        57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify-~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY-KDGQSYLLNLIDTPGH  135 (650)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE-EcCCceEEEeecCCCc
Confidence            35667899999999999999988754332   1111          13457888777766666 44   67899999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHH
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLED  159 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~  159 (170)
                      -+|..+..       +    .+.-++.+|+|+|+.+++..+....+-.-.+.   .  -.+|.|+||+|+...+.+.++.
T Consensus       136 vDFs~EVs-------R----slaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~--L~iIpVlNKIDlp~adpe~V~~  199 (650)
T KOG0462|consen  136 VDFSGEVS-------R----SLAACDGALLVVDASQGVQAQTVANFYLAFEA---G--LAIIPVLNKIDLPSADPERVEN  199 (650)
T ss_pred             ccccceeh-------e----hhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---C--CeEEEeeeccCCCCCCHHHHHH
Confidence            99754333       2    23344899999999988877765443322221   2  2789999999999886655554


Q ss_pred             Hhh
Q 046239          160 YLG  162 (170)
Q Consensus       160 ~~~  162 (170)
                      -+.
T Consensus       200 q~~  202 (650)
T KOG0462|consen  200 QLF  202 (650)
T ss_pred             HHH
Confidence            443

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.11  E-value=1.1e-09  Score=81.64  Aligned_cols=87  Identities=22%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEE---------------------e--eCCceEEEEeCCC
Q 046239           22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV---------------------L--KDGQVVNVIDTPG   78 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------~--~~~~~~~l~DtpG   78 (170)
                      |+++|.+++|||||+|+|++......  ..+..|.........                     .  .....+.++||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~--~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIA--NYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCccc--CCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            58999999999999999998753211  111122222111111                     0  0224689999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239           79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR  114 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (170)
                      +..........+.+++..+    .++|++++|++..
T Consensus        79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS  110 (318)
T ss_pred             CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence            9653322333444555444    4559999999986

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.7e-10  Score=89.07  Aligned_cols=38  Identities=26%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG   50 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~   50 (170)
                      .-+..++..++++|+||+|||||++.|.|...+..|..
T Consensus       341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I  378 (559)
T COG4988         341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI  378 (559)
T ss_pred             eeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence            34567888999999999999999999999987666543

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.10  E-value=7.5e-10  Score=75.93  Aligned_cols=129  Identities=14%  Similarity=0.130  Sum_probs=68.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch-H--HHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-F--VGK   91 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~--~~~   91 (170)
                      ...++..++++|++|+|||||++.|+|...+..|................+ .....++.+-|.+...+..++ .  -..
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~q~~~~~~~tv~~~lLS~G~~  102 (173)
T cd03246          24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL-GDHVGYLPQDDELFSGSIAENILSGGQR  102 (173)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHH-HhheEEECCCCccccCcHHHHCcCHHHH
Confidence            346788999999999999999999999876554422211110000000000 122344444444432111100 1  122


Q ss_pred             HHHHHHHhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEEcCC
Q 046239           92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEEA-AVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      +.+..++....+++++++- ++...++..... +.+.+.+...+   ..+++++||..
T Consensus       103 qrv~la~al~~~p~~lllD-EPt~~LD~~~~~~l~~~l~~~~~~---~~tii~~sh~~  156 (173)
T cd03246         103 QRLGLARALYGNPRILVLD-EPNSHLDVEGERALNQAIAALKAA---GATRIVIAHRP  156 (173)
T ss_pred             HHHHHHHHHhcCCCEEEEE-CCccccCHHHHHHHHHHHHHHHhC---CCEEEEEeCCH
Confidence            4455556677788876664 333366666543 34445444221   36888888854

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.09  E-value=1.2e-09  Score=74.26  Aligned_cols=120  Identities=11%  Similarity=0.054  Sum_probs=65.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ...++..++++|+||+|||||++.|+|...+..|.......................++.+   +.       .-..+.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---LS-------~G~~qrl   91 (163)
T cd03216          22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ---LS-------VGERQMV   91 (163)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe---cC-------HHHHHHH
Confidence            4567889999999999999999999998765444211111000000000000122333333   11       1223455


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      ..++....+++++++- ++...++.... .+.+.+.++..+   ..+++++||.-
T Consensus        92 ~laral~~~p~illlD-EP~~~LD~~~~~~l~~~l~~~~~~---~~tiii~sh~~  142 (163)
T cd03216          92 EIARALARNARLLILD-EPTAALTPAEVERLFKVIRRLRAQ---GVAVIFISHRL  142 (163)
T ss_pred             HHHHHHhcCCCEEEEE-CCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCH
Confidence            5666677788777663 33336666543 344445444221   36788888863

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=2.4e-09  Score=81.20  Aligned_cols=123  Identities=22%  Similarity=0.323  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCcccc-ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .|+..|.---|||||+.+++|..... .+....+.|+...++..+. .+..+.++|.||+.+           ++..+..
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia   69 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA   69 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence            47778889999999999999875422 2345668888888888887 566999999999985           3444444


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHh
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL  161 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~  161 (170)
                      .....|.+++|+++++++..+..+.+..+.- ++.   .+.++|+||+|..++  ..+++.+
T Consensus        70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi---~~giivltk~D~~d~--~r~e~~i  125 (447)
T COG3276          70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGI---KNGIIVLTKADRVDE--ARIEQKI  125 (447)
T ss_pred             hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCC---CceEEEEeccccccH--HHHHHHH
Confidence            5678899999999988999998888776655 443   378999999999987  3444443

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.08  E-value=3.1e-09  Score=72.99  Aligned_cols=111  Identities=13%  Similarity=0.009  Sum_probs=64.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ...++.+++++|+||+|||||++.|+|...+..|......      ..       ..++.+.+.+       ..-.++.+
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~~-------i~~~~q~~~L-------SgGq~qrv   80 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG------IT-------PVYKPQYIDL-------SGGELQRV   80 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC------EE-------EEEEcccCCC-------CHHHHHHH
Confidence            4467889999999999999999999998765443221110      00       1112221211       11234556


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      ..++....+++++++- ++...++.... .+.+.+.+...+.  ..+++++||..
T Consensus        81 ~laral~~~p~lllLD-EPts~LD~~~~~~l~~~l~~~~~~~--~~tiiivsH~~  132 (177)
T cd03222          81 AIAAALLRNATFYLFD-EPSAYLDIEQRLNAARAIRRLSEEG--KKTALVVEHDL  132 (177)
T ss_pred             HHHHHHhcCCCEEEEE-CCcccCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCH
Confidence            6666677788776663 33336665543 3445555543211  15788888864

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.05  E-value=1.2e-09  Score=77.77  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (220)
T cd03263          24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG   57 (220)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3567889999999999999999999998765554

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.05  E-value=1.4e-09  Score=77.22  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   59 (218)
T cd03255          26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG   59 (218)
T ss_pred             EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence            4567889999999999999999999998765544

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.04  E-value=3.6e-10  Score=91.22  Aligned_cols=34  Identities=26%  Similarity=0.246  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      .+++..++++|++|+|||||++.|+|...+..|.
T Consensus       358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~  391 (588)
T PRK13657        358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR  391 (588)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence            4577889999999999999999999998776653

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.04  E-value=2e-09  Score=76.17  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G   55 (213)
T cd03259          22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG   55 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            4567889999999999999999999998765544

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.04  E-value=3.3e-09  Score=81.05  Aligned_cols=120  Identities=19%  Similarity=0.286  Sum_probs=86.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccc-cc--c-----------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAF-KA--S-----------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS   83 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~-~~--~-----------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (170)
                      +-.+|+++..-.-|||||+..|+..... ..  .           ....+.|+..+-..+.| ++.++.++||||+-+|-
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFG   82 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFG   82 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCcc
Confidence            3468999999999999999998764311 00  0           12356777777777777 88999999999999875


Q ss_pred             CCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239           84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE  154 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (170)
                      ...+       +    .+.=+|.+++++|+.+++-++.+..+..-.+.   +  -+-|+|+||.|.....+
T Consensus        83 GEVE-------R----vl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~---g--L~PIVVvNKiDrp~Arp  137 (603)
T COG1217          83 GEVE-------R----VLSMVDGVLLLVDASEGPMPQTRFVLKKALAL---G--LKPIVVINKIDRPDARP  137 (603)
T ss_pred             chhh-------h----hhhhcceEEEEEEcccCCCCchhhhHHHHHHc---C--CCcEEEEeCCCCCCCCH
Confidence            4333       2    22334899999999988888887665543332   2  25678889999998854

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.04  E-value=2e-09  Score=74.37  Aligned_cols=130  Identities=9%  Similarity=0.064  Sum_probs=66.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCC---CCCCCCCCchHH--
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTP---GLFDSSAGSEFV--   89 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp---G~~~~~~~~~~~--   89 (170)
                      ...++..++++|+||+|||||++.|+|...+..|.......................++.+.+   ++.......+..  
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~  101 (182)
T cd03215          22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL  101 (182)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence            345778999999999999999999999876555422111100000000000012334444432   222211111111  


Q ss_pred             -------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCC
Q 046239           90 -------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        90 -------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                             ..+.+..++....+++++++- ++...++.... .+.+.+.++.. .  ..+++++||..
T Consensus       102 ~~~LS~G~~qrl~la~al~~~p~llllD-EP~~~LD~~~~~~l~~~l~~~~~-~--~~tiii~sh~~  164 (182)
T cd03215         102 SSLLSGGNQQKVVLARWLARDPRVLILD-EPTRGVDVGAKAEIYRLIRELAD-A--GKAVLLISSEL  164 (182)
T ss_pred             HhhcCHHHHHHHHHHHHHccCCCEEEEC-CCCcCCCHHHHHHHHHHHHHHHH-C--CCEEEEEeCCH
Confidence                   113344555566777776653 33336666543 33444444322 1  36888888864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.04  E-value=2.5e-09  Score=83.52  Aligned_cols=129  Identities=16%  Similarity=0.194  Sum_probs=85.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC-CCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      .....||+++|.-|+||||||-+|+..+.+..-.. ....++.....    +......++||..-.+       ....+.
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvt----Pe~vpt~ivD~ss~~~-------~~~~l~   74 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVT----PENVPTSIVDTSSDSD-------DRLCLR   74 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccC----cCcCceEEEecccccc-------hhHHHH
Confidence            44568999999999999999999998776443211 12222221111    1445588999874433       111122


Q ss_pred             HHHHhccCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHH
Q 046239           95 KCIGLAKGGIHAVLVVFSARNR--FSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLED  159 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~  159 (170)
                          .-.+++|+++++...++.  ++.....++-.+++.+++....|+|+|.||.|.......++++
T Consensus        75 ----~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~  137 (625)
T KOG1707|consen   75 ----KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV  137 (625)
T ss_pred             ----HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence                233566999999887632  3333567888888888776777999999999998775543333

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.04  E-value=4.2e-10  Score=90.87  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=28.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      .+++.+++++|++|||||||++.|+|.. +..|.
T Consensus       373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~  405 (588)
T PRK11174        373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS  405 (588)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence            3578899999999999999999999988 55543

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.04  E-value=4.1e-09  Score=71.82  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=28.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++++|+||+|||||++.|+|...+..|
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (166)
T cd03223          23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG   56 (166)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4467889999999999999999999998765444

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.04  E-value=9.8e-10  Score=79.02  Aligned_cols=34  Identities=24%  Similarity=0.230  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      +..++..++++||||||||||+++|+|.-.+..|
T Consensus        24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G   57 (258)
T COG1120          24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG   57 (258)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            4566899999999999999999999997766555

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.04  E-value=3.4e-10  Score=77.99  Aligned_cols=126  Identities=16%  Similarity=0.116  Sum_probs=65.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC------chH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG------SEF   88 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------~~~   88 (170)
                      ...++..++++|+||+|||||++.|+|...+..|............ ...+ .....++.+.|.+......      -..
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~-~~~i~~~~q~~~~~~~tv~~~i~~~LS~  101 (178)
T cd03247          24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKAL-SSLISVLNQRPYLFDTTLRNNLGRRFSG  101 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHH-HhhEEEEccCCeeecccHHHhhcccCCH
Confidence            4567789999999999999999999998765444221111100000 0000 1112233333332211000      001


Q ss_pred             HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcC
Q 046239           89 VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGG  147 (170)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~  147 (170)
                      -..+.+..++....+++++++--+. ..++.... .+++.+.+. .+   ..+++++||.
T Consensus       102 G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~-~~---~~tii~~sh~  156 (178)
T cd03247         102 GERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEV-LK---DKTLIWITHH  156 (178)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHH-cC---CCEEEEEecC
Confidence            1334455566677788777664333 36666543 344555544 22   3678888875

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=5.8e-09  Score=81.47  Aligned_cols=134  Identities=19%  Similarity=0.251  Sum_probs=88.9

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCcc-----------------------------ccccCCCCceeEEEeeEEE
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKA-----------------------------FKASAGSSGVTITCEMKTT   63 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~-----------------------------~~~~~~~~~~t~~~~~~~~   63 (170)
                      ..........+++|...+|||||+..|+-...                             ...+.+..+.|.......+
T Consensus       171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f  250 (603)
T KOG0458|consen  171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF  250 (603)
T ss_pred             ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence            34455778899999999999999977653210                             0111233566666665666


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC-----CCCH--HHHHHHHHHHHHhcccc
Q 046239           64 VLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN-----RFSQ--EEEAAVHRLPTLFGKKI  136 (170)
Q Consensus        64 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-----~~~~--~~~~~~~~l~~~~~~~~  136 (170)
                      +- ....+.|+|+||+.+|.       ..++    .....+|+.++|+|++.     +|..  +.++.+..++. ++.  
T Consensus       251 es-~~~~~tliDaPGhkdFi-------~nmi----~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lgi--  315 (603)
T KOG0458|consen  251 ES-KSKIVTLIDAPGHKDFI-------PNMI----SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LGI--  315 (603)
T ss_pred             ec-CceeEEEecCCCccccc-------hhhh----ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cCc--
Confidence            54 67899999999988752       1222    34567799999999862     2221  23444444444 442  


Q ss_pred             cceEEEEEEcCCCCCCChhhHHHHhh
Q 046239          137 FDYMIVVFTGGDYLEDNEKTLEDYLG  162 (170)
Q Consensus       137 ~~~~ivv~tk~D~~~~~~~~~~~~~~  162 (170)
                       ..++|++||+|++..+.++++++..
T Consensus       316 -~qlivaiNKmD~V~Wsq~RF~eIk~  340 (603)
T KOG0458|consen  316 -SQLIVAINKMDLVSWSQDRFEEIKN  340 (603)
T ss_pred             -ceEEEEeecccccCccHHHHHHHHH
Confidence             4899999999999998777766543

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.04  E-value=5.1e-10  Score=89.30  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ..+++.+++++|++|+|||||++.|+|...+..|.
T Consensus       344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  378 (529)
T TIGR02857       344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS  378 (529)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            45678899999999999999999999998776653

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.03  E-value=1.2e-09  Score=72.45  Aligned_cols=57  Identities=30%  Similarity=0.447  Sum_probs=40.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD   81 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (170)
                      .+++++|.+|+|||||+|+|++...... ....+.|....  .+..  ...+.++||||+.-
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~i~DtpG~~~  140 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQ--TIFL--TPTITLCDCPGLVF  140 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceE--EEEe--CCCEEEEECCCcCC
Confidence            3899999999999999999998775432 22333333332  3333  23689999999863

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.03  E-value=8.8e-10  Score=77.88  Aligned_cols=31  Identities=19%  Similarity=0.117  Sum_probs=26.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      .++ +++++|+||+|||||++.|+|...+..|
T Consensus        24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   54 (211)
T cd03264          24 GPG-MYGLLGPNGAGKTTLMRILATLTPPSSG   54 (211)
T ss_pred             cCC-cEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            346 8999999999999999999998765544

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.03  E-value=2.6e-09  Score=78.94  Aligned_cols=66  Identities=26%  Similarity=0.375  Sum_probs=47.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE   87 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   87 (170)
                      ....+++++|.+|+|||||+|+|++......+. .++.|...+.  +..  +..+.++||||+..+.....
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~~--~~~~~l~DtPGi~~~~~~~~  184 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQW--IKL--GKGLELLDTPGILWPKLEDQ  184 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEE--EEe--CCcEEEEECCCcCCCCCCcH
Confidence            456789999999999999999999976544433 3455555443  322  45689999999987654443

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.03  E-value=3.4e-09  Score=70.55  Aligned_cols=105  Identities=17%  Similarity=0.084  Sum_probs=60.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ...++..++++|+||+|||||++.|+|...+..|..      ...       ....+.++..  +.       .-..+..
T Consensus        22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i------~~~-------~~~~i~~~~~--lS-------~G~~~rv   79 (144)
T cd03221          22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV------TWG-------STVKIGYFEQ--LS-------GGEKMRL   79 (144)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE------EEC-------CeEEEEEEcc--CC-------HHHHHHH
Confidence            346778999999999999999999999876443321      111       0011111111  11       1223455


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccceEEEEEEcCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAA-VHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      ..++....+++++++--+ ...++...... .+.+.+.      ..+++++||..
T Consensus        80 ~laral~~~p~illlDEP-~~~LD~~~~~~l~~~l~~~------~~til~~th~~  127 (144)
T cd03221          80 ALAKLLLENPNLLLLDEP-TNHLDLESIEALEEALKEY------PGTVILVSHDR  127 (144)
T ss_pred             HHHHHHhcCCCEEEEeCC-ccCCCHHHHHHHHHHHHHc------CCEEEEEECCH
Confidence            556667778877666333 33555554433 3334332      25788888863

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.03  E-value=1.8e-09  Score=85.45  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=30.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ...++.+|+|||+||+|||||++.|+|...+..|.
T Consensus        25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~   59 (530)
T COG0488          25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE   59 (530)
T ss_pred             eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCe
Confidence            45678999999999999999999999988766654

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.02  E-value=4.8e-10  Score=71.03  Aligned_cols=104  Identities=21%  Similarity=0.256  Sum_probs=63.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+++++|+.|+|||||+++|-|.....      -.|....     | ++  -..+||||-+--    +   ...-..+..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~ly------kKTQAve-----~-~d--~~~IDTPGEy~~----~---~~~Y~aL~t   60 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLY------KKTQAVE-----F-ND--KGDIDTPGEYFE----H---PRWYHALIT   60 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhh------cccceee-----c-cC--ccccCCchhhhh----h---hHHHHHHHH
Confidence            579999999999999999999866421      1222222     1 11  125899998731    1   112122233


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++++++|..++++-+....-++.        ...+|+|-|+||.|+.++
T Consensus        61 t~~dadvi~~v~~and~~s~f~p~f~~--------~~~k~vIgvVTK~DLaed  105 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFPPGFLD--------IGVKKVIGVVTKADLAED  105 (148)
T ss_pred             HhhccceeeeeecccCccccCCccccc--------ccccceEEEEecccccch
Confidence            456779999998887543222211111        112479999999998743

>cd01855 YqeH YqeH

Probab=99.01  E-value=8.5e-10  Score=76.74  Aligned_cols=57  Identities=30%  Similarity=0.387  Sum_probs=38.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCcccc-------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFK-------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      +..++++|.+|+|||||||+|++.....       .....++.|.......  .  +..+.++||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~--~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIP--L--GNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEe--c--CCCCEEEeCcCC
Confidence            4689999999999999999999865322       1122334444443333  2  236899999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.01  E-value=2e-09  Score=77.35  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G   55 (235)
T cd03261          22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG   55 (235)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4567889999999999999999999998765544

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.01  E-value=1e-08  Score=72.93  Aligned_cols=34  Identities=26%  Similarity=0.253  Sum_probs=28.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   59 (220)
T cd03293          26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG   59 (220)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4567789999999999999999999998765444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13768 GTPase; Provisional

Probab=99.01  E-value=2.5e-09  Score=77.61  Aligned_cols=82  Identities=17%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239           69 QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      ..+.++|+||..++... ...+..+.+.+....  .+++++++|+....+..+.....++..........|+++|+||+|
T Consensus        97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D  173 (253)
T PRK13768         97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD  173 (253)
T ss_pred             CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence            36899999998763221 223333444443322  789999999976666666444443331111112359999999999


Q ss_pred             CCCCC
Q 046239          149 YLEDN  153 (170)
Q Consensus       149 ~~~~~  153 (170)
                      .+...
T Consensus       174 ~~~~~  178 (253)
T PRK13768        174 LLSEE  178 (253)
T ss_pred             hcCch
Confidence            98763

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.01  E-value=4.3e-09  Score=74.46  Aligned_cols=33  Identities=33%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||+|||||++.|+|...+..|
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03301          23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG   55 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            467889999999999999999999998765544

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.01  E-value=4e-10  Score=90.83  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      .+++..++++|++|+|||||++.|+|...+..|.
T Consensus       366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~  399 (582)
T PRK11176        366 IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE  399 (582)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence            4577889999999999999999999998776653

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.00  E-value=4.9e-09  Score=75.14  Aligned_cols=34  Identities=29%  Similarity=0.282  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||||||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   55 (232)
T cd03218          22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG   55 (232)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567889999999999999999999998765544

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.00  E-value=1.4e-09  Score=73.24  Aligned_cols=58  Identities=28%  Similarity=0.405  Sum_probs=41.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      ....+++++|.+|+|||||+|+|++......+. .++.|......  ..  ...+.++||||+
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~--~~--~~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEV--KL--DNKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEE--Ee--cCCEEEEECCCC
Confidence            456889999999999999999999876533322 23444433332  22  357899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.00  E-value=6.1e-10  Score=89.97  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=30.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ..+++..++++|++|+|||||++.|+|...+..|.
T Consensus       363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~  397 (592)
T PRK10790        363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE  397 (592)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence            34577899999999999999999999998776653

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.00  E-value=4.7e-10  Score=90.27  Aligned_cols=35  Identities=31%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ..+++.+++++|++|+|||||++.|+|...+..|.
T Consensus       354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~  388 (571)
T TIGR02203       354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ  388 (571)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence            35678899999999999999999999998766653

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.99  E-value=2.2e-09  Score=80.47  Aligned_cols=39  Identities=23%  Similarity=0.156  Sum_probs=33.1

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS   51 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~   51 (170)
                      .-+..++..+.++|||||||||+++.|.|...++.|...
T Consensus        25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~   63 (352)
T COG3842          25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL   63 (352)
T ss_pred             eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            345677889999999999999999999999988877443

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.99  E-value=6.2e-09  Score=73.70  Aligned_cols=34  Identities=26%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (213)
T TIGR01277        20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG   53 (213)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4567889999999999999999999998766554

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.99  E-value=2.2e-09  Score=75.89  Aligned_cols=34  Identities=21%  Similarity=0.213  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (211)
T cd03225          23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG   56 (211)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3567889999999999999999999998765544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.99  E-value=1.1e-09  Score=82.64  Aligned_cols=61  Identities=23%  Similarity=0.328  Sum_probs=42.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCC------CceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      ..++++|+||+|||||||+|++......+...      ..+|+....+..   . ....++||||+-++..
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l---~-~~~~liDTPGir~~~l  272 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF---P-HGGDLIDSPGVREFGL  272 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe---c-CCCEEEECCCCCcccC
Confidence            35899999999999999999987655443222      123444444443   1 2346999999998755

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.98  E-value=4.5e-09  Score=77.25  Aligned_cols=65  Identities=25%  Similarity=0.316  Sum_probs=45.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS   86 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   86 (170)
                      ....+++++|.+|+|||||+|+|++......+. .++.|...+.  +..  ...+.++||||+..+....
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~--~~~--~~~~~l~DtPG~~~~~~~~  180 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQW--IKL--SDGLELLDTPGILWPKFED  180 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEE--EEe--CCCEEEEECCCcccCCCCc
Confidence            345789999999999999999999876544432 3445554443  332  3468999999997654333

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.98  E-value=5.1e-09  Score=74.25  Aligned_cols=34  Identities=29%  Similarity=0.320  Sum_probs=28.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   58 (216)
T TIGR00960        25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG   58 (216)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3467889999999999999999999998765444

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.98  E-value=3.3e-09  Score=80.40  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=30.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ...++..++|+|+||||||||++.|+|...+..|.
T Consensus        28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~   62 (351)
T PRK11432         28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ   62 (351)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence            45577899999999999999999999998766653

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.98  E-value=2.3e-09  Score=76.71  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||||||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (230)
T TIGR03410        22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG   55 (230)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            4567899999999999999999999998765554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.98  E-value=1.3e-08  Score=71.47  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (201)
T cd03231          22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG   55 (201)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567899999999999999999999998765554

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.97  E-value=7e-09  Score=78.33  Aligned_cols=34  Identities=32%  Similarity=0.394  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++++|+||+|||||++.|+|...+..|
T Consensus        63 ~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G   96 (340)
T PRK13536         63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAG   96 (340)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce
Confidence            3567889999999999999999999998766554

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.97  E-value=4e-09  Score=77.05  Aligned_cols=63  Identities=29%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccC------CCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      .+...+++|+||+|||||+|+|.+......+.      ....+|+.......    .....++||||+.++..
T Consensus       163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l----~~gG~iiDTPGf~~~~l  231 (301)
T COG1162         163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL----PGGGWIIDTPGFRSLGL  231 (301)
T ss_pred             cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc----CCCCEEEeCCCCCccCc
Confidence            45688999999999999999999854333321      22234444444433    24678999999998754

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.97  E-value=5.6e-10  Score=84.87  Aligned_cols=124  Identities=19%  Similarity=0.216  Sum_probs=65.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCcccc----ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      +..++++|.+|+|||||+|+|++.....    .....++.|....  .+..  .....++||||+............+.+
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l  229 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPL--DDGHSLYDTPGIINSHQMAHYLDKKDL  229 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEe--CCCCEEEECCCCCChhHhhhhcCHHHH
Confidence            4689999999999999999999854311    1123344444333  3332  345689999999864211111111111


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+. .........+.++....+.......++.+..   ..  ..+.+++++.+.+..
T Consensus       230 ~~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~~--~~~~~~~~~~~~~h~  281 (360)
T TIGR03597       230 KYIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---EK--TSFTFYVSNELNIHR  281 (360)
T ss_pred             hhcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---Cc--eEEEEEccCCceeEe
Confidence            1111 1234455666666553333333222332221   11  256777777776543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.97  E-value=6.3e-09  Score=73.54  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      -...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G   53 (211)
T cd03298          19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG   53 (211)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34568889999999999999999999998765544

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.97  E-value=3.3e-09  Score=75.46  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=28.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   55 (220)
T cd03265          22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG   55 (220)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4457889999999999999999999998665444

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.97  E-value=3.7e-09  Score=78.70  Aligned_cols=34  Identities=18%  Similarity=0.122  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++++|+||||||||++.|+|...+..|
T Consensus        15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G   48 (302)
T TIGR01188        15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG   48 (302)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4567889999999999999999999998765554

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.97  E-value=7.6e-10  Score=90.96  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ..++.+++++|++|||||||++.|+|...+..|.
T Consensus       488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~  521 (694)
T TIGR03375       488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS  521 (694)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            4568899999999999999999999998776653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=3.6e-09  Score=80.34  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G   59 (356)
T PRK11650         26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG   59 (356)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence            3456789999999999999999999998776555

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.96  E-value=7.7e-09  Score=73.42  Aligned_cols=34  Identities=26%  Similarity=0.242  Sum_probs=28.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   60 (218)
T cd03266          27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG   60 (218)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            3457789999999999999999999998765544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.96  E-value=8e-09  Score=73.13  Aligned_cols=34  Identities=18%  Similarity=0.173  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   57 (214)
T TIGR02673        24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG   57 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567889999999999999999999998765444

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=3.9e-09  Score=75.87  Aligned_cols=131  Identities=16%  Similarity=0.190  Sum_probs=82.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC---CceEEEEeCCCCCCCCCCchHH---
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD---GQVVNVIDTPGLFDSSAGSEFV---   89 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~---   89 (170)
                      ..-.++|+-||.+|.|||||+.+|.+...........-.+.......+++..   ...+.++||.|+++.....+..   
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i  118 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI  118 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence            4455789999999999999999999876433322222223333333333312   2357899999999754432211   


Q ss_pred             ----HHHH----------H-HHHHhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           90 ----GKEI----------V-KCIGLAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        90 ----~~~~----------~-~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                          ..++          . .+......++|+.+|.+.++ +++...+.-.+..+....      ++|-|+-|+|.+..
T Consensus       119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~LdskV------NIIPvIAKaDtisK  191 (406)
T KOG3859|consen  119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSKV------NIIPVIAKADTISK  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhhh------hhHHHHHHhhhhhH
Confidence                1111          1 11122356889999998885 566666666666665543      88999999998866

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.96  E-value=8.8e-09  Score=74.18  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (239)
T cd03296          24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG   57 (239)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4467889999999999999999999998765544

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.96  E-value=1.5e-09  Score=77.22  Aligned_cols=66  Identities=21%  Similarity=0.180  Sum_probs=43.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD   81 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (170)
                      ....+..++++|+|||||||+++.+.+...++.|................+ +.+..+++.-.|++.
T Consensus        23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~L-Rr~IGYviQqigLFP   88 (309)
T COG1125          23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVEL-RRKIGYVIQQIGLFP   88 (309)
T ss_pred             EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHH-HHhhhhhhhhcccCC
Confidence            355678899999999999999999999887776644433333333333333 344556666666654

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.96  E-value=5.4e-09  Score=79.80  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G   58 (369)
T PRK11000         25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG   58 (369)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            3457789999999999999999999998766554

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.96  E-value=4.6e-09  Score=75.77  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (242)
T cd03295          23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG   56 (242)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4567789999999999999999999998765544

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.96  E-value=6.5e-09  Score=76.18  Aligned_cols=34  Identities=21%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G   79 (269)
T cd03294          46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG   79 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            4567889999999999999999999998765544

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.96  E-value=1.1e-09  Score=89.22  Aligned_cols=37  Identities=24%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS   51 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~   51 (170)
                      ...++.+++++|++|||||||.+.|+|...+..|...
T Consensus       495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~  531 (709)
T COG2274         495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL  531 (709)
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            4677899999999999999999999999887766443

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.95  E-value=7.6e-09  Score=77.15  Aligned_cols=34  Identities=29%  Similarity=0.299  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++++||||||||||++.|+|...+..|
T Consensus        29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G   62 (306)
T PRK13537         29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG   62 (306)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3456789999999999999999999998766554

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.95  E-value=1.8e-09  Score=76.06  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|++|+|||||++.|+|...+..|
T Consensus        30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   63 (207)
T cd03369          30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG   63 (207)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            3467889999999999999999999998765554

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=3.1e-09  Score=76.92  Aligned_cols=131  Identities=18%  Similarity=0.234  Sum_probs=89.6

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF   80 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   80 (170)
                      ..++..+|+.+|.-.-|||||-.+|+..-...              .+....+.|+......+.. ..+.+..+|+||+-
T Consensus         8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHa   86 (394)
T COG0050           8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHA   86 (394)
T ss_pred             CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChH
Confidence            45677899999999999999999987532100              0122345665555555555 67888999999998


Q ss_pred             CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHH
Q 046239           81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDY  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~  160 (170)
                      +       ..+.|+--+    .+.|..|+|+.+.++.-++.++.+-.-++ .+-   ..+++++||+|++++  .++-+.
T Consensus        87 D-------YvKNMItgA----aqmDgAILVVsA~dGpmPqTrEHiLlarq-vGv---p~ivvflnK~Dmvdd--~ellel  149 (394)
T COG0050          87 D-------YVKNMITGA----AQMDGAILVVAATDGPMPQTREHILLARQ-VGV---PYIVVFLNKVDMVDD--EELLEL  149 (394)
T ss_pred             H-------HHHHHhhhH----HhcCccEEEEEcCCCCCCcchhhhhhhhh-cCC---cEEEEEEecccccCc--HHHHHH
Confidence            6       444444333    34589999999988888887665543333 332   378999999999986  355555


Q ss_pred             hhh
Q 046239          161 LGH  163 (170)
Q Consensus       161 ~~~  163 (170)
                      ++.
T Consensus       150 Vem  152 (394)
T COG0050         150 VEM  152 (394)
T ss_pred             HHH
Confidence            543

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.95  E-value=9.1e-10  Score=90.71  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      .+++.+++++|++|||||||++.|+|...+..|.
T Consensus       502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~  535 (710)
T TIGR03796       502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE  535 (710)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            5678899999999999999999999998776653

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.95  E-value=4.6e-09  Score=79.69  Aligned_cols=33  Identities=30%  Similarity=0.299  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G   59 (353)
T TIGR03265        27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG   59 (353)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCce
Confidence            456789999999999999999999999876655

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.95  E-value=1.1e-08  Score=72.89  Aligned_cols=34  Identities=26%  Similarity=0.221  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (222)
T PRK10908         24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAG   57 (222)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3467889999999999999999999998765544

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.95  E-value=1.4e-09  Score=89.66  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=30.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ..+++.+++++|++|+|||||++.|+|...+..|.
T Consensus       503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~  537 (711)
T TIGR00958       503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ  537 (711)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence            35578899999999999999999999998776653

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.95  E-value=1.9e-09  Score=88.56  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=30.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      .+++.+++++|++|||||||++.|+|...+..|.
T Consensus       476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~  509 (686)
T TIGR03797       476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS  509 (686)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            5578899999999999999999999998776654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.95  E-value=2.4e-08  Score=72.61  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (255)
T PRK11248         23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG   56 (255)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567889999999999999999999998765544

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.94  E-value=2.2e-08  Score=71.01  Aligned_cols=34  Identities=15%  Similarity=0.228  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   66 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG   66 (214)
T ss_pred             EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence            3567789999999999999999999998765554

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.94  E-value=4.3e-09  Score=74.89  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G   60 (221)
T TIGR02211        27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG   60 (221)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567889999999999999999999998765544

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.94  E-value=8.1e-09  Score=73.50  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (222)
T cd03224          22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG   55 (222)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567889999999999999999999998765544

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.94  E-value=1.7e-08  Score=70.42  Aligned_cols=126  Identities=11%  Similarity=0.042  Sum_probs=67.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCc--cccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCC-CCCch----
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDS-SAGSE----   87 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~-~~~~~----   87 (170)
                      ...++..++|+|+||+|||||++.|+|..  .+..|........ ..  ...+ .....++.+.+.+... +..+.    
T Consensus        31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~-~~--~~~~-~~~i~~~~q~~~~~~~~t~~~~i~~~  106 (194)
T cd03213          31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP-LD--KRSF-RKIIGYVPQDDILHPTLTVRETLMFA  106 (194)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEe-Cc--hHhh-hheEEEccCcccCCCCCcHHHHHHHH
Confidence            45678899999999999999999999987  5444321111100 00  0011 2233445555554431 11111    


Q ss_pred             -----H--HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEEcCC
Q 046239           88 -----F--VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEA-AVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        88 -----~--~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                           .  -..+.+..++....+++++++ .++...++....+ +.+.+.++. +.  ..++++++|.-
T Consensus       107 ~~~~~LS~G~~qrv~laral~~~p~illl-DEP~~~LD~~~~~~l~~~l~~~~-~~--~~tiii~sh~~  171 (194)
T cd03213         107 AKLRGLSGGERKRVSIALELVSNPSLLFL-DEPTSGLDSSSALQVMSLLRRLA-DT--GRTIICSIHQP  171 (194)
T ss_pred             HHhccCCHHHHHHHHHHHHHHcCCCEEEE-eCCCcCCCHHHHHHHHHHHHHHH-hC--CCEEEEEecCc
Confidence                 0  012223444556677776665 3333466666543 344444432 21  36888888863

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.94  E-value=1.1e-09  Score=88.22  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..+++..++++|++|+|||||++.|+|...+..|
T Consensus       362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G  395 (576)
T TIGR02204       362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG  395 (576)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence            3567889999999999999999999998876655

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.94  E-value=1.1e-08  Score=71.80  Aligned_cols=130  Identities=11%  Similarity=0.050  Sum_probs=64.8

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCc--cccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC------
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG------   85 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------   85 (170)
                      -...++..++|+|+||+|||||++.|+|..  .+..|.......................++.+.|.+......      
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~  100 (200)
T cd03217          21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY  100 (200)
T ss_pred             eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence            345678899999999999999999999973  233331111000000000000001123344444433321100      


Q ss_pred             --chH--HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcC
Q 046239           86 --SEF--VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGG  147 (170)
Q Consensus        86 --~~~--~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~  147 (170)
                        ...  -..+.+..++....+++++++ .++...++.... .+++.+.++...   ..+++++||.
T Consensus       101 ~~~~LS~G~~qrv~laral~~~p~illl-DEPt~~LD~~~~~~l~~~L~~~~~~---~~tiii~sh~  163 (200)
T cd03217         101 VNEGFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREE---GKSVLIITHY  163 (200)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCEEEE-eCCCccCCHHHHHHHHHHHHHHHHC---CCEEEEEecC
Confidence              011  122334455556677776665 333346666543 444555554221   3677888875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.94  E-value=1.8e-08  Score=70.92  Aligned_cols=34  Identities=21%  Similarity=0.179  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G   56 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG   56 (204)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567789999999999999999999998765554

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.94  E-value=4.6e-09  Score=78.16  Aligned_cols=34  Identities=32%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++++|+||+|||||++.|+|...+..|
T Consensus        24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G   57 (301)
T TIGR03522        24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG   57 (301)
T ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3467889999999999999999999998766554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.93  E-value=9.1e-09  Score=74.91  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=28.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G   67 (257)
T PRK11247         34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG   67 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            3567889999999999999999999998765544

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.93  E-value=5.2e-09  Score=75.05  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   60 (233)
T cd03258          27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG   60 (233)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3467889999999999999999999998766554

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.93  E-value=1.1e-08  Score=73.39  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   54 (232)
T PRK10771         21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASG   54 (232)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567889999999999999999999998765554

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.93  E-value=2.3e-09  Score=75.00  Aligned_cols=128  Identities=18%  Similarity=0.256  Sum_probs=77.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+++++|++|||||++=..+.....+.. -...+.|+........+.....+.+||+-|...+      ....+...-.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D-~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f------men~~~~q~d   76 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARD-TRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF------MENYLSSQED   76 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhh-hhccCCcceeeehhhhhhhhheeehhccCCcHHH------HHHHHhhcch
Confidence            46899999999999987655553222111 2344566555544444434567889999998742      2222222333


Q ss_pred             hccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNR-FSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ....+++++++|+|+..+ ++..-...-+-|..++.....-.++++++|.|++..+
T Consensus        77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d  132 (295)
T KOG3886|consen   77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED  132 (295)
T ss_pred             hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence            456788999999999632 3332222222233333333334899999999998663

>PRK00098 GTPase RsgA; Reviewed

Probab=98.93  E-value=6.4e-09  Score=77.25  Aligned_cols=61  Identities=30%  Similarity=0.310  Sum_probs=41.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC------CceeEEEeeEEEEeeCCceEEEEeCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTITCEMKTTVLKDGQVVNVIDTPGLFDS   82 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (170)
                      .+..++++|+||+|||||+|+|++......+...      ...|.......  .  ....+++||||+.++
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~--~--~~~~~~~DtpG~~~~  229 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD--L--PGGGLLIDTPGFSSF  229 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE--c--CCCcEEEECCCcCcc
Confidence            3568999999999999999999997655443222      12333233322  2  234689999999864

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.93  E-value=4.1e-09  Score=76.04  Aligned_cols=34  Identities=21%  Similarity=0.131  Sum_probs=28.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   58 (241)
T PRK14250         25 KFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG   58 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3457789999999999999999999998765554

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.93  E-value=1.9e-08  Score=71.19  Aligned_cols=36  Identities=19%  Similarity=0.246  Sum_probs=31.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG   50 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~   50 (170)
                      ...++.+++++|++|||||||.+.|.|...+..|..
T Consensus        29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I   64 (252)
T COG1124          29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI   64 (252)
T ss_pred             EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Confidence            456789999999999999999999999988776643

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.93  E-value=6.2e-09  Score=79.51  Aligned_cols=34  Identities=24%  Similarity=0.266  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G   69 (375)
T PRK09452         36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG   69 (375)
T ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            3456789999999999999999999999876554

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=98.93  E-value=7.1e-09  Score=68.73  Aligned_cols=122  Identities=18%  Similarity=0.088  Sum_probs=73.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+..++|.+-+|||+|++-.+....+.-...+.+..--.......-.....+.+|||.|..           ++++..+
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqe-----------rfrsitk   76 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQE-----------RFRSITK   76 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchH-----------HHHHHHH
Confidence            46888999999999999999886554221111111111111111111123568899999997           4566666


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~  152 (170)
                      .++++.-.+++|+|.+++-+.+. ..++..-....+ ...++ ..+|.+|+|+...
T Consensus        77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q-~P~k~VFlLVGhKsDL~Sq  131 (213)
T KOG0091|consen   77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ-GPDKVVFLLVGHKSDLQSQ  131 (213)
T ss_pred             HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC-CCCeeEEEEeccccchhhh
Confidence            77888888999999975544443 233333333333 22233 4678889997643

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.93  E-value=1.5e-09  Score=87.36  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=29.6

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++++|++|||||||++.|+|...+..|
T Consensus       337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G  370 (569)
T PRK10789        337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG  370 (569)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            3467889999999999999999999998876655

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.92  E-value=1.5e-08  Score=71.26  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   55 (205)
T cd03226          22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG   55 (205)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3567889999999999999999999998765554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.92  E-value=2.3e-09  Score=76.95  Aligned_cols=34  Identities=29%  Similarity=0.280  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (234)
T cd03251          24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG   57 (234)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence            3567889999999999999999999999765554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.92  E-value=1.7e-08  Score=73.72  Aligned_cols=38  Identities=29%  Similarity=0.226  Sum_probs=32.4

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS   51 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~   51 (170)
                      -....+..++++||||||||||++.|.|...++.|...
T Consensus        23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~   60 (345)
T COG1118          23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR   60 (345)
T ss_pred             eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEE
Confidence            34567889999999999999999999999988776443

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.92  E-value=9.2e-09  Score=73.95  Aligned_cols=34  Identities=24%  Similarity=0.172  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G   56 (236)
T TIGR03864        23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG   56 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            3567889999999999999999999998765554

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.92  E-value=1.3e-08  Score=72.07  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++++|+||+|||||++.|+|...+..|
T Consensus        22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03262          22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG   55 (213)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567889999999999999999999998765544

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.92  E-value=8.2e-09  Score=70.10  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=29.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ....+.+++|+|++|+|||||+|.+.|...+..|
T Consensus        21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G   54 (231)
T COG3840          21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG   54 (231)
T ss_pred             eecCCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence            3456789999999999999999999999877665

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.92  E-value=6.6e-09  Score=74.27  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G   65 (228)
T PRK10584         32 VVKRGETIALIGESGSGKSTLLAILAGLDDGSSG   65 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            3467889999999999999999999998765544

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.92  E-value=1.5e-08  Score=71.50  Aligned_cols=34  Identities=29%  Similarity=0.274  Sum_probs=28.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (210)
T cd03269          22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSG   55 (210)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3467889999999999999999999998765444

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.92  E-value=1.2e-08  Score=73.40  Aligned_cols=34  Identities=29%  Similarity=0.301  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G   55 (237)
T TIGR00968        22 EVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG   55 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3567889999999999999999999998765444

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.91  E-value=8.7e-09  Score=76.14  Aligned_cols=61  Identities=31%  Similarity=0.304  Sum_probs=41.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCC------CceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS   83 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (170)
                      +..++++|++|+|||||+|+|+|......+...      ...|....  .+.+  ....+++||||+.++.
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~--~~~~--~~~~~liDtPG~~~~~  227 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRE--LFPL--PGGGLLIDTPGFREFG  227 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEE--EEEc--CCCCEEEECCCCCccC
Confidence            368999999999999999999998655444221      12333332  2322  2245899999997643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.91  E-value=2.7e-08  Score=69.65  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (198)
T TIGR01189        22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG   55 (198)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            3567889999999999999999999998765544

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.91  E-value=1.4e-08  Score=71.57  Aligned_cols=34  Identities=26%  Similarity=0.255  Sum_probs=28.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (208)
T cd03268          22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG   55 (208)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            3467889999999999999999999998765544

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.91  E-value=4.8e-09  Score=74.91  Aligned_cols=34  Identities=15%  Similarity=0.102  Sum_probs=28.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   62 (225)
T PRK10247         29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG   62 (225)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            3557789999999999999999999998765554

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.8e-08  Score=80.10  Aligned_cols=134  Identities=22%  Similarity=0.266  Sum_probs=85.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC-----------c--------e----------------------
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----------G--------V----------------------   54 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~-----------~--------~----------------------   54 (170)
                      +...-+|++.|.+.+||||++|+++.....+.+..+.           |        .                      
T Consensus       106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            4455789999999999999999998655433332110           0        0                      


Q ss_pred             eEEEeeEEEEeeCC------ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHH
Q 046239           55 TITCEMKTTVLKDG------QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRL  128 (170)
Q Consensus        55 t~~~~~~~~~~~~~------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l  128 (170)
                      ........+.|+.+      ..+.++|.||+.-..        +...-+..+...+|+++||..+...++..+.+++...
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~v  257 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKV  257 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHh
Confidence            00000112222221      358899999998532        2222223345677999999999877777788887766


Q ss_pred             HHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239          129 PTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG  162 (170)
Q Consensus       129 ~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~  162 (170)
                      .+.     ..+++|+.||||.....++-.++..+
T Consensus       258 s~~-----KpniFIlnnkwDasase~ec~e~V~~  286 (749)
T KOG0448|consen  258 SEE-----KPNIFILNNKWDASASEPECKEDVLK  286 (749)
T ss_pred             hcc-----CCcEEEEechhhhhcccHHHHHHHHH
Confidence            654     24899999999988775433344333

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.91  E-value=1.5e-08  Score=68.28  Aligned_cols=117  Identities=15%  Similarity=0.075  Sum_probs=60.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ..++..++++|+||+|||||++.|+|...+..+................+ .....++.+   +..       -..+...
T Consensus        22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~-~~~i~~~~q---lS~-------G~~~r~~   90 (157)
T cd00267          22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL-RRRIGYVPQ---LSG-------GQRQRVA   90 (157)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHH-HhceEEEee---CCH-------HHHHHHH
Confidence            45678999999999999999999999875443321111110000000000 112222322   111       1233444


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccceEEEEEEcC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAA-VHRLPTLFGKKIFDYMIVVFTGG  147 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~tk~  147 (170)
                      .++.....++++++- ++...++...... .+.+.+....   ...+++++|.
T Consensus        91 l~~~l~~~~~i~ilD-Ep~~~lD~~~~~~l~~~l~~~~~~---~~tii~~sh~  139 (157)
T cd00267          91 LARALLLNPDLLLLD-EPTSGLDPASRERLLELLRELAEE---GRTVIIVTHD  139 (157)
T ss_pred             HHHHHhcCCCEEEEe-CCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCC
Confidence            555556667666653 3333565554433 3444443221   2578888876

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=8.4e-10  Score=85.58  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=32.5

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS   52 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~   52 (170)
                      -.-.++.+|+|+|++||||||+++.++|...+..|....
T Consensus       359 l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~  397 (573)
T COG4987         359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITL  397 (573)
T ss_pred             eeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeE
Confidence            346788999999999999999999999987777665443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.91  E-value=3.7e-09  Score=79.90  Aligned_cols=61  Identities=25%  Similarity=0.285  Sum_probs=40.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCC------CceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      ..++++|+||+|||||||+|++......+...      ..+|+......  + . ....|+||||+..+..
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~--l-~-~g~~liDTPG~~~~~l  239 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFE--L-P-NGGLLADTPGFNQPDL  239 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEE--C-C-CCcEEEeCCCcccccc
Confidence            46899999999999999999987644333211      11333333332  2 1 2348999999998765

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.91  E-value=2.3e-09  Score=86.31  Aligned_cols=35  Identities=29%  Similarity=0.247  Sum_probs=30.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ...++.+++++|++|+|||||++.|+|...+..|.
T Consensus       362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~  396 (574)
T PRK11160        362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE  396 (574)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            34678899999999999999999999998766653

>cd01856 YlqF YlqF

Probab=98.91  E-value=7.7e-09  Score=70.77  Aligned_cols=59  Identities=25%  Similarity=0.374  Sum_probs=41.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF   80 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   80 (170)
                      ....+++++|.+|+|||||+|.|++...... ....+.|.......  .  ...+.++||||+.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~--~--~~~~~~iDtpG~~  171 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIK--I--SPGIYLLDTPGIL  171 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEE--e--cCCEEEEECCCCC
Confidence            3457899999999999999999998665322 22334444444333  2  2568999999974

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.91  E-value=2.2e-09  Score=78.26  Aligned_cols=135  Identities=13%  Similarity=0.039  Sum_probs=75.5

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCCCc----
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSAGS----   86 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~----   86 (170)
                      .-....+.+++++|+||+|||||++.+.+...++.|.................  .+++...++.-+++.....-.    
T Consensus        26 sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA  105 (339)
T COG1135          26 SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA  105 (339)
T ss_pred             eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhh
Confidence            34567789999999999999999999999988777643322211111100000  012223333333333211000    


Q ss_pred             ----------hHH---------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHH
Q 046239           87 ----------EFV---------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRL  128 (170)
Q Consensus        87 ----------~~~---------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l  128 (170)
                                .+.                           -++.+..+++...+|. ++++..++.-+++.. ..+++.|
T Consensus       106 ~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~-iLL~DEaTSALDP~TT~sIL~LL  184 (339)
T COG1135         106 FPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK-ILLCDEATSALDPETTQSILELL  184 (339)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC-EEEecCccccCChHHHHHHHHHH
Confidence                      000                           2334444455556665 466777766666664 5566666


Q ss_pred             HHHhcccccceEEEEEEcCCCC
Q 046239          129 PTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus       129 ~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      .++..+.  .-+|+++||-..+
T Consensus       185 ~~In~~l--glTIvlITHEm~V  204 (339)
T COG1135         185 KDINREL--GLTIVLITHEMEV  204 (339)
T ss_pred             HHHHHHc--CCEEEEEechHHH
Confidence            6654333  4789999997644

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.91  E-value=1.7e-08  Score=75.23  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++++|+||||||||++.|+|...+..|
T Consensus        26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G   59 (303)
T TIGR01288        26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRG   59 (303)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3567889999999999999999999998765544

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.91  E-value=1.5e-07  Score=72.71  Aligned_cols=124  Identities=17%  Similarity=0.163  Sum_probs=70.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC------CccccccC-CCC-c-------eeEEE--eeEEEEe--------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG------RKAFKASA-GSS-G-------VTITC--EMKTTVL--------------   65 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~------~~~~~~~~-~~~-~-------~t~~~--~~~~~~~--------------   65 (170)
                      .+..+|+++|++|+||||++..|+.      ....-... ... +       .....  ..+....              
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~  177 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK  177 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence            4457899999999999999988872      21100000 000 0       00001  1111000              


Q ss_pred             --eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 046239           66 --KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVV  143 (170)
Q Consensus        66 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (170)
                        ..+..++|+||||....   ......++......  ..++.+++|+|+..+  .......+.+.+..     .+.-+|
T Consensus       178 ~~~~~~DvViIDTaGr~~~---d~~lm~El~~i~~~--~~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~I  245 (429)
T TIGR01425       178 FKKENFDIIIVDTSGRHKQ---EDSLFEEMLQVAEA--IQPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVI  245 (429)
T ss_pred             HHhCCCCEEEEECCCCCcc---hHHHHHHHHHHhhh--cCCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEE
Confidence              02457899999998753   23455555555433  367889999998633  22333344444322     478899


Q ss_pred             EEcCCCCCC
Q 046239          144 FTGGDYLED  152 (170)
Q Consensus       144 ~tk~D~~~~  152 (170)
                      +||.|....
T Consensus       246 lTKlD~~ar  254 (429)
T TIGR01425       246 ITKLDGHAK  254 (429)
T ss_pred             EECccCCCC
Confidence            999997644

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.91  E-value=8.3e-09  Score=78.49  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA   47 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~   47 (170)
                      ..++..++|+|+||||||||++.|+|...+..
T Consensus        28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~   59 (362)
T TIGR03258        28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAG   59 (362)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            45678999999999999999999999887655

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.90  E-value=1.3e-08  Score=72.06  Aligned_cols=34  Identities=24%  Similarity=0.239  Sum_probs=28.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (214)
T cd03292          23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG   56 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3467889999999999999999999998765444

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.90  E-value=9.8e-09  Score=75.29  Aligned_cols=131  Identities=19%  Similarity=0.213  Sum_probs=80.9

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      .+...+.++|++||.+++|||||+++|++...+...  ..-.|-.........+.++.+.+.||.||.+.      ....
T Consensus       172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lpsg~~vlltDTvGFisd------LP~~  243 (410)
T KOG0410|consen  172 GREGESSPVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLPSGNFVLLTDTVGFISD------LPIQ  243 (410)
T ss_pred             ccccCCCceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCCCCcEEEEeechhhhhh------CcHH
Confidence            344566689999999999999999999965443322  11122222223344557889999999999852      2222


Q ss_pred             HHHHHHh---ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccceEEEEEEcCCCCC
Q 046239           93 IVKCIGL---AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG--KKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        93 ~~~~~~~---~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~  151 (170)
                      ++..+..   -...+|+++-|.|++++.-... ...+..|.++--  ......++-|-||.|.-.
T Consensus       244 LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~  308 (410)
T KOG0410|consen  244 LVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE  308 (410)
T ss_pred             HHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence            2322222   2346799999999985544443 455555555421  112235677888888653

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.90  E-value=1.4e-08  Score=72.61  Aligned_cols=35  Identities=29%  Similarity=0.343  Sum_probs=29.7

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      -...++..++|+|+||+|||||++.|+|...+..|
T Consensus        26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   60 (228)
T cd03257          26 FSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG   60 (228)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34567889999999999999999999998765554

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.90  E-value=2.9e-09  Score=76.95  Aligned_cols=61  Identities=23%  Similarity=0.215  Sum_probs=41.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCC------CCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      +..++++|++|+|||||+|+|++......+..      ...+|+.......     ...+++||||+.++..
T Consensus       120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-----~~~~liDtPG~~~~~l  186 (245)
T TIGR00157       120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-----HGGLIADTPGFNEFGL  186 (245)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-----CCcEEEeCCCccccCC
Confidence            35889999999999999999998754443311      1223444443332     2358999999987644

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.90  E-value=7.7e-09  Score=74.21  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   64 (233)
T PRK11629         31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG   64 (233)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4567789999999999999999999998765444

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.90  E-value=1.3e-08  Score=77.38  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G   53 (352)
T PRK11144         21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKG   53 (352)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            456789999999999999999999998766554

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.89  E-value=1.7e-08  Score=72.44  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G   55 (232)
T cd03300          22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG   55 (232)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3467899999999999999999999998776554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=5.8e-09  Score=76.51  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   64 (271)
T PRK13632         31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSG   64 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4567889999999999999999999998765544

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=4.5e-09  Score=76.99  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=28.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||+|||||++.|+|...+..|
T Consensus        32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G   64 (269)
T PRK13648         32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG   64 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            467889999999999999999999998765544

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.89  E-value=3.8e-09  Score=75.17  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=28.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   59 (221)
T cd03244          26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG   59 (221)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence            3456789999999999999999999998765544

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.89  E-value=5.5e-09  Score=72.95  Aligned_cols=74  Identities=22%  Similarity=0.104  Sum_probs=45.0

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239           69 QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      ..++++||||....   ......++..+....  .++-+++|++++..  ..+...+....+.+     ...-+++||.|
T Consensus        84 ~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~-----~~~~lIlTKlD  151 (196)
T PF00448_consen   84 YDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAF-----GIDGLILTKLD  151 (196)
T ss_dssp             SSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHS-----STCEEEEESTT
T ss_pred             CCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhcc-----cCceEEEEeec
Confidence            46999999999853   233445555555444  56788999998633  23333333333332     24567799999


Q ss_pred             CCCCCh
Q 046239          149 YLEDNE  154 (170)
Q Consensus       149 ~~~~~~  154 (170)
                      ....-+
T Consensus       152 et~~~G  157 (196)
T PF00448_consen  152 ETARLG  157 (196)
T ss_dssp             SSSTTH
T ss_pred             CCCCcc
Confidence            876643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.89  E-value=3.8e-08  Score=73.61  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=69.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC---CCce------------e--EEEeeEEEE---------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG---SSGV------------T--ITCEMKTTV---------------   64 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~---~~~~------------t--~~~~~~~~~---------------   64 (170)
                      .++.+++++|++|+||||++..|++......+..   ..+.            .  .........               
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998876543221100   0000            0  000000000               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh----ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 046239           65 -LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL----AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY  139 (170)
Q Consensus        65 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (170)
                       ...+..++++||||.....   .....++..+.+.    ....++..++|+++..+  ...........+..     ..
T Consensus       192 ~~~~~~D~ViIDTaGr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~-----~~  261 (318)
T PRK10416        192 AKARGIDVLIIDTAGRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAV-----GL  261 (318)
T ss_pred             HHhCCCCEEEEeCCCCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhC-----CC
Confidence             0134579999999997643   2223333333322    12457788999998733  22222222222211     36


Q ss_pred             EEEEEEcCCCCCC
Q 046239          140 MIVVFTGGDYLED  152 (170)
Q Consensus       140 ~ivv~tk~D~~~~  152 (170)
                      .-+|+||.|....
T Consensus       262 ~giIlTKlD~t~~  274 (318)
T PRK10416        262 TGIILTKLDGTAK  274 (318)
T ss_pred             CEEEEECCCCCCC
Confidence            7899999997644

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.89  E-value=1.6e-08  Score=76.85  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G   52 (354)
T TIGR02142        20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG   52 (354)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            456789999999999999999999998766554

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.89  E-value=2.8e-09  Score=76.27  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (229)
T cd03254          25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG   58 (229)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            4567788999999999999999999998765554

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.89  E-value=2e-08  Score=69.81  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||||||||++.|+|...+..|
T Consensus        14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   47 (190)
T TIGR01166        14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG   47 (190)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4567789999999999999999999998765544

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.88  E-value=3.9e-09  Score=85.21  Aligned_cols=33  Identities=24%  Similarity=0.261  Sum_probs=29.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++++|++|+|||||++.|+|...+..|
T Consensus       358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G  390 (585)
T TIGR01192       358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG  390 (585)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence            467889999999999999999999998876655

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.88  E-value=2.9e-08  Score=71.82  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=28.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++.+++|+|+||+|||||++.|+|...+..|
T Consensus        22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G   54 (246)
T cd03237          22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG   54 (246)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence            457889999999999999999999998766554

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.88  E-value=4.8e-08  Score=70.26  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G   76 (236)
T cd03267          43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG   76 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            4567889999999999999999999998765544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.88  E-value=3.9e-09  Score=75.82  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   56 (236)
T cd03253          23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG   56 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            3457889999999999999999999998765554

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.88  E-value=1.4e-08  Score=77.04  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G   57 (353)
T PRK10851         25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG   57 (353)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            456789999999999999999999998776655

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.88  E-value=1.4e-08  Score=71.49  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=28.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++.+++|+|+||+|||||++.|+|...+..|
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (206)
T TIGR03608        21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG   53 (206)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            457789999999999999999999998765544

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.88  E-value=2.2e-09  Score=88.47  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ..++.+++++|++|||||||++.|+|...+..|.
T Consensus       497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~  530 (708)
T TIGR01193       497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE  530 (708)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence            4568899999999999999999999998776654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.88  E-value=2.7e-08  Score=69.17  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=27.9

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFK   46 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~   46 (170)
                      .....++.+.+++||+|||||||++.+-+.....
T Consensus        27 ~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~   60 (253)
T COG1117          27 NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI   60 (253)
T ss_pred             ceeccCCceEEEECCCCcCHHHHHHHHHhhcccC
Confidence            3456778899999999999999999988765433

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.88  E-value=7.2e-08  Score=66.34  Aligned_cols=61  Identities=20%  Similarity=0.131  Sum_probs=39.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD   81 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (170)
                      ...++..++++||+|||||||+|.+.|...+..|...      .....++-+...+..++.-+++..
T Consensus        27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~------l~~r~i~gPgaergvVFQ~~~LlP   87 (259)
T COG4525          27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ------LNGRRIEGPGAERGVVFQNEALLP   87 (259)
T ss_pred             eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEE------ECCEeccCCCccceeEeccCccch
Confidence            4556778899999999999999999998775554322      222222222334555555555543

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.88  E-value=4.7e-09  Score=74.31  Aligned_cols=129  Identities=11%  Similarity=0.022  Sum_probs=75.5

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH---
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV---   89 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~---   89 (170)
                      ..+..++...+++|+||+||||++++|+|...+..|...-......  +.  . ..+..++-.-.|++.-....++.   
T Consensus        22 sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~--~~--~-~~rIGyLPEERGLy~k~tv~dql~yl   96 (300)
T COG4152          22 SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS--QE--I-KNRIGYLPEERGLYPKMTVEDQLKYL   96 (300)
T ss_pred             eeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh--hh--h-hhhcccChhhhccCccCcHHHHHHHH
Confidence            4466788999999999999999999999987765543221110000  00  0 23444555555555421111111   


Q ss_pred             --------------------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 046239           90 --------------------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTL  131 (170)
Q Consensus        90 --------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~  131 (170)
                                                            ..+-+.++....+.|+++|+--+.+ ++++.+.+.++...-.
T Consensus        97 a~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS-GLDPVN~elLk~~I~~  175 (300)
T COG4152          97 AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS-GLDPVNVELLKDAIFE  175 (300)
T ss_pred             HHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc-CCChhhHHHHHHHHHH
Confidence                                                  2333444456678899888865555 6666655554443322


Q ss_pred             hcccccceEEEEEEcCCC
Q 046239          132 FGKKIFDYMIVVFTGGDY  149 (170)
Q Consensus       132 ~~~~~~~~~ivv~tk~D~  149 (170)
                      +.  .+..+|+..||...
T Consensus       176 lk--~~GatIifSsH~Me  191 (300)
T COG4152         176 LK--EEGATIIFSSHRME  191 (300)
T ss_pred             HH--hcCCEEEEecchHH
Confidence            22  22479999999764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.88  E-value=8.9e-09  Score=77.94  Aligned_cols=34  Identities=18%  Similarity=0.092  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G   60 (343)
T PRK11153         27 HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG   60 (343)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            4467889999999999999999999998765544

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.87  E-value=1.6e-08  Score=72.89  Aligned_cols=34  Identities=29%  Similarity=0.301  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   58 (241)
T PRK10895         25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG   58 (241)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3467889999999999999999999998765544

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.87  E-value=2.5e-08  Score=70.64  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=28.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...+ ..++|+|+||+|||||++.|+|...+..|
T Consensus        20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   52 (214)
T cd03297          20 DLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGG   52 (214)
T ss_pred             EEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3456 89999999999999999999998765554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.87  E-value=2e-08  Score=76.40  Aligned_cols=34  Identities=24%  Similarity=0.221  Sum_probs=29.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G   48 (363)
T TIGR01186        15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG   48 (363)
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce
Confidence            4567889999999999999999999999876554

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.87  E-value=4.4e-09  Score=75.64  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (237)
T cd03252          24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG   57 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            3467889999999999999999999998765554

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.87  E-value=2.6e-09  Score=87.85  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      .+++.+++++|++|+|||||++.|+|...+..|.
T Consensus       480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~  513 (694)
T TIGR01846       480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ  513 (694)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            4578899999999999999999999998766653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.87  E-value=1.1e-08  Score=73.50  Aligned_cols=34  Identities=24%  Similarity=0.158  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   55 (236)
T cd03219          22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG   55 (236)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            4567889999999999999999999998765544

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.87  E-value=6.4e-09  Score=76.61  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G   62 (279)
T PRK13635         29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG   62 (279)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            3467889999999999999999999999766554

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.87  E-value=3.5e-08  Score=68.78  Aligned_cols=123  Identities=11%  Similarity=0.028  Sum_probs=64.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc--ccccCCCCceeEEEeeEEE-EeeCCceEEEEeCCCCCCCCC-CchHH-
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTITCEMKTT-VLKDGQVVNVIDTPGLFDSSA-GSEFV-   89 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~--~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~DtpG~~~~~~-~~~~~-   89 (170)
                      ...++..++|+|+||+|||||++.|+|...  +..|.      ....-... ........++.+.+.+..... .+... 
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~------i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  102 (192)
T cd03232          29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE------ILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRF  102 (192)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE------EEECCEehHHHhhhceEEecccCccccCCcHHHHHHH
Confidence            346778999999999999999999999642  22221      11110000 000122344444454433111 11110 


Q ss_pred             ----------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcC
Q 046239           90 ----------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGG  147 (170)
Q Consensus        90 ----------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~  147 (170)
                                ..+.+..++....+++++++- ++...++.... .+++.+.+.. +.  ..+++++||.
T Consensus       103 ~~~~~~LSgGe~qrv~la~al~~~p~vlllD-EP~~~LD~~~~~~l~~~l~~~~-~~--~~tiiivtH~  167 (192)
T cd03232         103 SALLRGLSVEQRKRLTIGVELAAKPSILFLD-EPTSGLDSQAAYNIVRFLKKLA-DS--GQAILCTIHQ  167 (192)
T ss_pred             HHHHhcCCHHHhHHHHHHHHHhcCCcEEEEe-CCCcCCCHHHHHHHHHHHHHHH-Hc--CCEEEEEEcC
Confidence                      112233445566777766653 33346666654 3344454432 21  3688888887

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.86  E-value=2.3e-08  Score=70.13  Aligned_cols=34  Identities=21%  Similarity=0.135  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G   56 (200)
T PRK13540         23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG   56 (200)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            3567899999999999999999999998766554

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.86  E-value=6.1e-08  Score=69.46  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||+|||||++.|+|...+..|
T Consensus         8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   40 (230)
T TIGR01184         8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG   40 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            456789999999999999999999998765544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.86  E-value=1.1e-09  Score=75.49  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=28.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G   54 (180)
T cd03214          21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG   54 (180)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3467889999999999999999999998765444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.86  E-value=1.2e-08  Score=74.63  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   66 (265)
T PRK10575         33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG   66 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            3467889999999999999999999998765544

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=98.86  E-value=3.7e-09  Score=69.73  Aligned_cols=118  Identities=19%  Similarity=0.148  Sum_probs=78.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCc---eeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG---VTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      -+++++++|.-=+|||||+=..+-.........+..   .+.......    ....+.+|||.|...|           -
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed----~ra~L~IWDTAGQErf-----------H   76 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED----CRADLHIWDTAGQERF-----------H   76 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc----ceeeeeeeeccchHhh-----------h
Confidence            357899999999999999876664432222221111   111111111    2456789999999853           2


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+-..++++.+.+|+|+|++++-+.+. +.+...|+..++...  -++||.||.|+-+.
T Consensus        77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEee  133 (218)
T KOG0088|consen   77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEE  133 (218)
T ss_pred             ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHh
Confidence            223346788999999999986655553 566777888887663  78999999997544

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.1e-08  Score=81.99  Aligned_cols=131  Identities=18%  Similarity=0.167  Sum_probs=88.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-----------------eCCceEEEEeCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-----------------KDGQVVNVIDTPG   78 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~l~DtpG   78 (170)
                      --..++++|+|.-.+|||-|+..|.+.....+...  +.|..+....+..                 ..-..+.+|||||
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeag--gitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg  549 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAG--GITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG  549 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhcccccccccc--ceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence            33557899999999999999999998765433222  2222221110000                 0224588999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC----Ch
Q 046239           79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED----NE  154 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~----~~  154 (170)
                      +..|.           ..-.+....+|.+|+|+|+.+++.++....++.|+...     .|+||.+||+|.+-.    .+
T Consensus       550 hEsFt-----------nlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rk-----tpFivALNKiDRLYgwk~~p~  613 (1064)
T KOG1144|consen  550 HESFT-----------NLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRK-----TPFIVALNKIDRLYGWKSCPN  613 (1064)
T ss_pred             chhhh-----------hhhhccccccceEEEEeehhccCCcchhHHHHHHHhcC-----CCeEEeehhhhhhcccccCCC
Confidence            98753           11123456679999999999999988888888777752     499999999998732    11


Q ss_pred             hhHHHHhhhc
Q 046239          155 KTLEDYLGHE  164 (170)
Q Consensus       155 ~~~~~~~~~~  164 (170)
                      ..+.+.++++
T Consensus       614 ~~i~~~lkkQ  623 (1064)
T KOG1144|consen  614 APIVEALKKQ  623 (1064)
T ss_pred             chHHHHHHHh
Confidence            3566666654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=2.1e-08  Score=72.11  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G   60 (237)
T PRK11614         27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG   60 (237)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            4567889999999999999999999998765554

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.85  E-value=4.8e-08  Score=66.79  Aligned_cols=37  Identities=24%  Similarity=0.201  Sum_probs=31.3

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      .-+..++..+-++||||+|||||++.|++...++.|.
T Consensus        22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~   58 (223)
T COG2884          22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK   58 (223)
T ss_pred             eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCce
Confidence            3456777888999999999999999999998877663

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.85  E-value=3.7e-09  Score=75.49  Aligned_cols=34  Identities=18%  Similarity=0.147  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   69 (226)
T cd03248          36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG   69 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence            3467889999999999999999999998765554

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.85  E-value=4.9e-08  Score=68.82  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++++|+||+|||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (207)
T PRK13539         24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG   57 (207)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4567889999999999999999999998765554

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.85  E-value=1.4e-08  Score=76.15  Aligned_cols=65  Identities=26%  Similarity=0.336  Sum_probs=48.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS   86 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   86 (170)
                      ....+++++|-+++|||||||+|++......+. .+|.|...+....    ...+.++||||+..+....
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~~~  194 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKL----DDGIYLLDTPGIIPPKFDD  194 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEc----CCCeEEecCCCcCCCCccc
Confidence            344789999999999999999999988755533 3466665554443    4458999999998655443

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.85  E-value=1e-09  Score=73.81  Aligned_cols=123  Identities=19%  Similarity=0.096  Sum_probs=76.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      +.+...+++++|.-++||||+|...|............+..-......+.. +..+..+|||.|..+|           .
T Consensus        16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~-Edvr~mlWdtagqeEf-----------D   83 (246)
T KOG4252|consen   16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLI-EDVRSMLWDTAGQEEF-----------D   83 (246)
T ss_pred             hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhH-HHHHHHHHHhccchhH-----------H
Confidence            344557899999999999999999995443222111111111111111111 3456778999999864           3


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++++++.+-++|++-.++.+.+. ..+-+.+....   -..|+++|-||+|++++
T Consensus        84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~---~~IPtV~vqNKIDlved  139 (246)
T KOG4252|consen   84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET---ERIPTVFVQNKIDLVED  139 (246)
T ss_pred             HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh---ccCCeEEeeccchhhHh
Confidence            444567888889899999876655443 23333333332   22499999999999866

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.85  E-value=7.5e-09  Score=82.94  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=29.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++++|++|+|||||++.|+|...+..|
T Consensus       340 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G  373 (544)
T TIGR01842       340 RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG  373 (544)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3457889999999999999999999999876655

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=3.2e-08  Score=72.72  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (274)
T PRK13644         24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG   57 (274)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3567889999999999999999999998765554

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.85  E-value=3.1e-08  Score=71.18  Aligned_cols=33  Identities=30%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++.+++|+|+||+|||||++.|+|...+..|
T Consensus        22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G   54 (235)
T cd03299          22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSG   54 (235)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            467889999999999999999999998765554

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.85  E-value=3e-08  Score=74.94  Aligned_cols=34  Identities=15%  Similarity=0.091  Sum_probs=29.6

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        27 ~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G   60 (343)
T TIGR02314        27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG   60 (343)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3567889999999999999999999999876655

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=98.85  E-value=1.6e-08  Score=69.83  Aligned_cols=117  Identities=17%  Similarity=0.089  Sum_probs=75.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..++++||..++|||+|+-+.+....+.... +.-.  ..-......  .....+.+|||.|..+.+        +++  
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yv-PTVF--dnys~~v~V~dg~~v~L~LwDTAGqedYD--------rlR--   70 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYV-PTVF--DNYSANVTVDDGKPVELGLWDTAGQEDYD--------RLR--   70 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCccccc-CeEE--ccceEEEEecCCCEEEEeeeecCCCcccc--------ccc--
Confidence            3678999999999999987776543322211 1101  111111112  133457899999999752        111  


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQE--EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       ...++..|++|+++++.++.+.+  ...++.++......   -|+++|.||.|+-++
T Consensus        71 -plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d  124 (198)
T KOG0393|consen   71 -PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDD  124 (198)
T ss_pred             -ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhC
Confidence             13678899999999997554444  35666666665432   399999999998754

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.84  E-value=2.1e-08  Score=73.47  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=30.6

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      .-...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G   68 (267)
T PRK15112         33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG   68 (267)
T ss_pred             eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            345667889999999999999999999998766554

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.84  E-value=2.3e-08  Score=73.31  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=28.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   62 (269)
T PRK11831         29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG   62 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3457789999999999999999999998765544

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.84  E-value=6.7e-08  Score=67.95  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G   60 (204)
T cd03250          27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG   60 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC
Confidence            4567889999999999999999999998765554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.84  E-value=1.5e-08  Score=74.44  Aligned_cols=34  Identities=24%  Similarity=0.167  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (274)
T PRK13647         27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG   60 (274)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence            3467899999999999999999999998765544

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.84  E-value=6.2e-08  Score=67.68  Aligned_cols=34  Identities=21%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (195)
T PRK13541         22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG   55 (195)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3467889999999999999999999998765544

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.84  E-value=5.5e-09  Score=76.68  Aligned_cols=31  Identities=35%  Similarity=0.330  Sum_probs=27.6

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      -...++.+++|+|++|+|||||+++|+|...
T Consensus        25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289          25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence            3567888999999999999999999999875

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.84  E-value=7.7e-09  Score=73.53  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G   59 (220)
T cd03245          26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG   59 (220)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            4567889999999999999999999998765544

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.84  E-value=8.7e-08  Score=62.99  Aligned_cols=123  Identities=20%  Similarity=0.078  Sum_probs=72.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh-CCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~-~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...-+++++|--++|||.++..|+ |...+..+..+.-..+........-.....+.++||.|+...          -.+
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~----------~~e   76 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG----------QQE   76 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc----------hhh
Confidence            345688999999999999997655 444332222111111111111111113467999999999863          111


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc---ccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG---KKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~ivv~tk~D~~~~  152 (170)
                      +-+.+..-+|++++|.+..+.   +..+.++.|...+.   ++...|++++.|++|.-++
T Consensus        77 Lprhy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p  133 (198)
T KOG3883|consen   77 LPRHYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP  133 (198)
T ss_pred             hhHhHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence            222344556999999997633   44444444444443   3334499999999998544

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.83  E-value=2.9e-08  Score=76.42  Aligned_cols=33  Identities=27%  Similarity=0.249  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++++||||+|||||++.|+|...+..|
T Consensus        26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG   58 (402)
T PRK09536         26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG   58 (402)
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence            467889999999999999999999998765554

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.83  E-value=5.4e-08  Score=68.96  Aligned_cols=35  Identities=17%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ...++.+++|+|+||||||||++.|+|...+..|.
T Consensus         9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~   43 (213)
T PRK15177          9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD   43 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence            34567899999999999999999999987655553

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.83  E-value=9.5e-09  Score=75.62  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G   59 (277)
T PRK13652         26 IAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG   59 (277)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4567889999999999999999999998765554

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=7.3e-09  Score=82.95  Aligned_cols=42  Identities=19%  Similarity=0.097  Sum_probs=34.5

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCcee
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT   55 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t   55 (170)
                      -..+++.++++|||+|+||||+++.|.+.+.+..|....++.
T Consensus       489 fti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~  530 (716)
T KOG0058|consen  489 FTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV  530 (716)
T ss_pred             eeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence            346788999999999999999999999999888775544433

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=4.2e-08  Score=72.70  Aligned_cols=121  Identities=16%  Similarity=0.273  Sum_probs=74.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcc---cccc--CCCCceeEEEeeEEEEe--------eCCceEEEEeCCCCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKA---FKAS--AGSSGVTITCEMKTTVL--------KDGQVVNVIDTPGLFDS   82 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~---~~~~--~~~~~~t~~~~~~~~~~--------~~~~~~~l~DtpG~~~~   82 (170)
                      ...+.+++++|.-.||||||.++|.....   ++..  ....+.|-.........        .+...+.++|+||+.. 
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas-   82 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS-   82 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-
Confidence            34568999999999999999999875421   1111  12223333222222221        1234579999999975 


Q ss_pred             CCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                            ..+-++    ....-.|..++|+|+..+...+..+.+- +.+++    .++.+||+||.|.+.+
T Consensus        83 ------LIRtii----ggaqiiDlm~lviDv~kG~QtQtAEcLi-ig~~~----c~klvvvinkid~lpE  137 (522)
T KOG0461|consen   83 ------LIRTII----GGAQIIDLMILVIDVQKGKQTQTAECLI-IGELL----CKKLVVVINKIDVLPE  137 (522)
T ss_pred             ------HHHHHH----hhhheeeeeeEEEehhcccccccchhhh-hhhhh----ccceEEEEeccccccc
Confidence                  222222    2344569999999998776666554442 23333    3478899999997755

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.83  E-value=4.6e-08  Score=74.87  Aligned_cols=34  Identities=26%  Similarity=0.265  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G   74 (377)
T PRK11607         41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG   74 (377)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            3456789999999999999999999999876655

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.83  E-value=5.8e-09  Score=75.07  Aligned_cols=34  Identities=24%  Similarity=0.196  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G   58 (238)
T cd03249          25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG   58 (238)
T ss_pred             EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC
Confidence            4567899999999999999999999998765544

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=6.9e-09  Score=69.42  Aligned_cols=123  Identities=14%  Similarity=0.075  Sum_probs=80.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-cCCC--CceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGS--SGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~--~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      .+....++|+|+-+||||||+-++-....-.. +..+  .-.|.......+.. ....+.+||.-|...           
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe~-----------   81 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQES-----------   81 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChHH-----------
Confidence            34557889999999999999977654332111 2211  12333344455555 477889999888863           


Q ss_pred             HHHHHHhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARN--RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .++++..++.-+|++++++|+.+  ++......+-..+.+..-+++  |+++..||.|+-+.
T Consensus        82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~--p~L~lankqd~q~~  141 (197)
T KOG0076|consen   82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGA--PVLVLANKQDLQNA  141 (197)
T ss_pred             HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCC--chhhhcchhhhhhh
Confidence            56667777788899999999974  333333333333333333343  99999999998766

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.83  E-value=3.2e-08  Score=71.84  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (252)
T TIGR03005        22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEG   55 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4567889999999999999999999998765544

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.83  E-value=5.3e-08  Score=70.98  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G   57 (258)
T PRK13548         24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG   57 (258)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            3457789999999999999999999998765554

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.82  E-value=2.5e-08  Score=72.27  Aligned_cols=30  Identities=20%  Similarity=0.178  Sum_probs=26.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ...++.+++|+|+||+|||||++.|+|...
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         25 EIPDNTITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            346788999999999999999999999864

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.82  E-value=2.6e-08  Score=68.71  Aligned_cols=67  Identities=15%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD   81 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (170)
                      +-....+.+++++|+||+||||+++.|.+.-.++.|.....+... ..+.... .....++.+-.|++.
T Consensus        22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~-~~~p~~v-rr~IGVl~~e~glY~   88 (245)
T COG4555          22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT-VRDPSFV-RRKIGVLFGERGLYA   88 (245)
T ss_pred             eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccc-ccChHHH-hhhcceecCCcChhh
Confidence            345677899999999999999999999988766655322111111 1111111 344455557777775

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.82  E-value=1.8e-08  Score=73.75  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=28.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G   62 (265)
T PRK10253         29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG   62 (265)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            3457889999999999999999999998765544

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.82  E-value=2.1e-08  Score=72.29  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G   57 (242)
T TIGR03411        24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG   57 (242)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            4567889999999999999999999998765544

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.82  E-value=1e-07  Score=67.94  Aligned_cols=33  Identities=27%  Similarity=0.208  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||+|||||++.|+|...+..|
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (223)
T TIGR03740        23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG   55 (223)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            467889999999999999999999998765544

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.82  E-value=1.7e-08  Score=79.95  Aligned_cols=43  Identities=19%  Similarity=0.173  Sum_probs=32.6

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCcee
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT   55 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t   55 (170)
                      .....++.+|+++||||+|||||++.|.|...+..|....+.+
T Consensus       342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~  384 (530)
T COG0488         342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET  384 (530)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc
Confidence            3446678899999999999999999998877655543333333

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.82  E-value=8.4e-08  Score=69.89  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        32 ~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G   65 (257)
T PRK14246         32 KIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS   65 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence            3457889999999999999999999998765543

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.82  E-value=6.9e-08  Score=69.97  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=28.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||+|||||++.|+|...+..|
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (250)
T PRK11264         25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG   58 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            4567889999999999999999999998765444

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.82  E-value=4.1e-08  Score=70.74  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (240)
T PRK09493         23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG   56 (240)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3467889999999999999999999998765544

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.82  E-value=2.1e-08  Score=70.81  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ...++...+++|++|+|||||++.+.|...+..|.
T Consensus        30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~Ge   64 (263)
T COG1127          30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE   64 (263)
T ss_pred             eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCe
Confidence            56678899999999999999999999998877764

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.81  E-value=4.4e-09  Score=70.52  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=29.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      +..++..|++.||+|||||||++.++....++.|
T Consensus        25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G   58 (223)
T COG4619          25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSG   58 (223)
T ss_pred             eecCCceEEEeCCCCccHHHHHHHHHhccCCCCc
Confidence            4567889999999999999999999988766655

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=4.8e-08  Score=75.18  Aligned_cols=34  Identities=18%  Similarity=0.139  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        50 ~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070         50 AIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            3567889999999999999999999998766554

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.81  E-value=3e-08  Score=78.88  Aligned_cols=34  Identities=26%  Similarity=0.247  Sum_probs=28.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G   66 (510)
T PRK15439         33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG   66 (510)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3467789999999999999999999998765544

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.81  E-value=1.6e-08  Score=71.86  Aligned_cols=108  Identities=20%  Similarity=0.346  Sum_probs=72.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+++++|.+.+|||||+..++.......  ...-.|-.+-...+.+ .+-.++++|.||+.+.....+-.+++.+. 
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA--~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQvia-  135 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAA--SYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVIA-  135 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhh--ceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEEE-
Confidence            3446899999999999999999998654222  2222333444444444 78899999999999876666655666553 


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG  133 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~  133 (170)
                         ..+.+|+++.|+|+..  +...+..++.-.+..|
T Consensus       136 ---vArtaDlilMvLDatk--~e~qr~~le~ELe~vG  167 (364)
T KOG1486|consen  136 ---VARTADLILMVLDATK--SEDQREILEKELEAVG  167 (364)
T ss_pred             ---EeecccEEEEEecCCc--chhHHHHHHHHHHHhc
Confidence               3456699999999973  2334445544444344

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.81  E-value=8.2e-08  Score=74.01  Aligned_cols=125  Identities=18%  Similarity=0.235  Sum_probs=66.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-----cCCCC------------------ceeEEEeeEE-------EEe
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSS------------------GVTITCEMKT-------TVL   65 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-----~~~~~------------------~~t~~~~~~~-------~~~   65 (170)
                      ...+.+++++|+||+||||++..|++......     +....                  +.........       ..+
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l  267 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL  267 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh
Confidence            35678999999999999999998876421100     10000                  0000000000       001


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEE
Q 046239           66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFT  145 (170)
Q Consensus        66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t  145 (170)
                       .+....++||+|.....   .....++..+ .. ...++-.++|++++..  ..+   +..+...+..  ....-+++|
T Consensus       268 -~~~d~VLIDTaGrsqrd---~~~~~~l~~l-~~-~~~~~~~~LVl~at~~--~~~---~~~~~~~f~~--~~~~~~I~T  334 (420)
T PRK14721        268 -RGKHMVLIDTVGMSQRD---QMLAEQIAML-SQ-CGTQVKHLLLLNATSS--GDT---LDEVISAYQG--HGIHGCIIT  334 (420)
T ss_pred             -cCCCEEEecCCCCCcch---HHHHHHHHHH-hc-cCCCceEEEEEcCCCC--HHH---HHHHHHHhcC--CCCCEEEEE
Confidence             24568999999987521   2222233222 21 2335567888888622  222   2222233322  236688899


Q ss_pred             cCCCCCCC
Q 046239          146 GGDYLEDN  153 (170)
Q Consensus       146 k~D~~~~~  153 (170)
                      |.|....-
T Consensus       335 KlDEt~~~  342 (420)
T PRK14721        335 KVDEAASL  342 (420)
T ss_pred             eeeCCCCc
Confidence            99987554

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.81  E-value=6.7e-08  Score=70.16  Aligned_cols=34  Identities=29%  Similarity=0.334  Sum_probs=28.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G   59 (251)
T PRK09544         26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG   59 (251)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3467889999999999999999999998765444

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.80  E-value=1e-07  Score=66.99  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=26.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ...++..++|+|+||+|||||++.|+|...
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          29 VVKPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            356778999999999999999999999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.80  E-value=3.4e-08  Score=72.24  Aligned_cols=35  Identities=34%  Similarity=0.371  Sum_probs=29.9

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      -...++..++|+|+||+|||||++.|+|...+..|
T Consensus        32 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   66 (265)
T TIGR02769        32 LSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG   66 (265)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34567889999999999999999999998765554

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.80  E-value=1.1e-07  Score=72.19  Aligned_cols=124  Identities=20%  Similarity=0.186  Sum_probs=70.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEE-------------------------------EEe
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKT-------------------------------TVL   65 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~-------------------------------~~~   65 (170)
                      .++.+|++|||+|+||||.+-.|........+....+.-+ .+.++                               ..+
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT-tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l  279 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT-TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL  279 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE-eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence            3488999999999999999988876543111111111000 00000                               001


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEE
Q 046239           66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFT  145 (170)
Q Consensus        66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t  145 (170)
                       ....++|+||.|...-   ..+...++..++...  ...-..+|++++..  ..   -+..+.+.++.-  ..--+++|
T Consensus       280 -~~~d~ILVDTaGrs~~---D~~~i~el~~~~~~~--~~i~~~Lvlsat~K--~~---dlkei~~~f~~~--~i~~~I~T  346 (407)
T COG1419         280 -RDCDVILVDTAGRSQY---DKEKIEELKELIDVS--HSIEVYLVLSATTK--YE---DLKEIIKQFSLF--PIDGLIFT  346 (407)
T ss_pred             -hcCCEEEEeCCCCCcc---CHHHHHHHHHHHhcc--ccceEEEEEecCcc--hH---HHHHHHHHhccC--CcceeEEE
Confidence             2357999999999853   244455555555433  33446777887621  12   223333334322  35578899


Q ss_pred             cCCCCCCCh
Q 046239          146 GGDYLEDNE  154 (170)
Q Consensus       146 k~D~~~~~~  154 (170)
                      |.|....-+
T Consensus       347 KlDET~s~G  355 (407)
T COG1419         347 KLDETTSLG  355 (407)
T ss_pred             cccccCchh
Confidence            999886643

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=5e-08  Score=70.40  Aligned_cols=34  Identities=26%  Similarity=0.251  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||+|||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (242)
T PRK11124         24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSG   57 (242)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4567889999999999999999999998765544

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.80  E-value=2.1e-08  Score=72.25  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   56 (241)
T cd03256          23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG   56 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            4567889999999999999999999998765444

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.80  E-value=4e-08  Score=71.34  Aligned_cols=31  Identities=19%  Similarity=0.177  Sum_probs=27.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAF   45 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~   45 (170)
                      ...++.+++|+|+||+|||||++.|+|...+
T Consensus        26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   56 (253)
T PRK14267         26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLEL   56 (253)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence            3567889999999999999999999998654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.80  E-value=3.4e-08  Score=71.62  Aligned_cols=29  Identities=21%  Similarity=0.196  Sum_probs=26.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ..++..++|+|+||+|||||++.|+|...
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         27 FEEKELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence            46778999999999999999999999864

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.80  E-value=1e-08  Score=74.60  Aligned_cols=33  Identities=24%  Similarity=0.248  Sum_probs=28.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||+|||||++.|+|...+..|
T Consensus        44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   76 (257)
T cd03288          44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG   76 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcccCCCCC
Confidence            457889999999999999999999998765544

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.80  E-value=7.7e-08  Score=73.10  Aligned_cols=132  Identities=17%  Similarity=0.173  Sum_probs=67.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC-----CCC------------------ceeEEEeeEE-------EEe
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSS------------------GVTITCEMKT-------TVL   65 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~-----~~~------------------~~t~~~~~~~-------~~~   65 (170)
                      ...+.+++++||+|+||||++..|........+.     ...                  +.........       ..+
T Consensus       134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l  213 (374)
T PRK14722        134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL  213 (374)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence            4557899999999999999999987643211110     000                  0000000000       011


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccceEEE
Q 046239           66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK---IFDYMIV  142 (170)
Q Consensus        66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~iv  142 (170)
                       .+..++++||+|....+   . ...+.+..+.. ...+.-.++|+++....... .+.+.......+..   .....-+
T Consensus       214 -~~~DlVLIDTaG~~~~d---~-~l~e~La~L~~-~~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~  286 (374)
T PRK14722        214 -RNKHMVLIDTIGMSQRD---R-TVSDQIAMLHG-ADTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGC  286 (374)
T ss_pred             -cCCCEEEEcCCCCCccc---H-HHHHHHHHHhc-cCCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEE
Confidence             35678999999998532   2 22222222222 23344567888886332221 22333333332110   0013568


Q ss_pred             EEEcCCCCCCCh
Q 046239          143 VFTGGDYLEDNE  154 (170)
Q Consensus       143 v~tk~D~~~~~~  154 (170)
                      ++||.|....-+
T Consensus       287 I~TKlDEt~~~G  298 (374)
T PRK14722        287 ILTKLDEASNLG  298 (374)
T ss_pred             EEeccccCCCcc
Confidence            889999876543

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.79  E-value=3.6e-08  Score=71.37  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=28.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK   46 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~   46 (170)
                      ...++..++|+|+||+|||||++.|+|...+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~   54 (247)
T TIGR00972        23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV   54 (247)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            45678899999999999999999999987654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.79  E-value=2.8e-08  Score=75.98  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        46 ~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G   79 (382)
T TIGR03415        46 DIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRG   79 (382)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            3567789999999999999999999998776554

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		1e-25
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		7e-19
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		2e-18
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		2e-18
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		5e-18
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		6e-18
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		2e-05
3bb3_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		2e-05
2j3e_A	249	Dimerization Is Important For The Gtpase Activity O		3e-05
3def_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		3e-05

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 5/156 (3%)
Query: 15  PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVI 74
           P   +  +VL+G+TG GKSATGNSILGRK F +   +  +T  CE +++  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75  DTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK 134
           DTPG+FD+   +    KEI++CI L   G HA+L+V     R+++EE  A  ++   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 KIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           +   + I++FT  D L D    L DYL  E P+ ++
Sbjct: 143 RARSFXILIFTRKDDLGDT--NLHDYL-REAPEDIQ 175

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 10  WKPTS----PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66  KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAV 125
            + ++V +IDTP +F      E + KE+ +C  L+  G H VL++ +   R++ +++ A 
Sbjct: 69  GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH-VLLLVTQLGRYTSQDQQAA 126
Query: 126 HRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL 161
            R+  +FG+    + IV+FT  + L  N  +L DY+
Sbjct: 127 QRVKEIFGEDAMGHTIVLFTHKEDL--NGGSLMDYM 160

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 4/154 (2%)
Query: 16  SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVID 75
           S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC        + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76  TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK 135
           TP +F      E + KE+ +C  L+  G H +L+V +   R++ +++ A  R+  +FG+ 
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLV-TQLGRYTSQDQQAAQRVKEIFGED 119
Query: 136 IFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPL 169
              + IV+FT  + L  N  +L DY+     K L
Sbjct: 120 AMGHTIVLFTHKEDL--NGGSLMDYMHDSDNKAL 151

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPG 78
           E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC        + ++V +IDTP 
Sbjct: 2   ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79  LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFD 138
           +F      E + KE+ +C  L+  G H +L+V +   R++ +++ A  R+  +FG+    
Sbjct: 61  MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLV-TQLGRYTSQDQQAAQRVKEIFGEDAMG 119
Query: 139 YMIVVFTGGDYLEDNEKTLEDYLGHECPKPL 169
           + IV+FT  + L  N  +L DY+     K L
Sbjct: 120 HTIVLFTHKEDL--NGGSLMDYMHDSDNKAL 148

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%)
Query: 10  WKPTS----PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL 65
           W P +     S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66  KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAV 125
            + ++V +IDTP  F      E + KE+ +C  L+  G H VL++ +   R++ +++ A 
Sbjct: 69  GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPH-VLLLVTQLGRYTSQDQQAA 126
Query: 126 HRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDY 160
            R+  +FG+    + IV+FT  + L  N  +L DY
Sbjct: 127 QRVKEIFGEDAXGHTIVLFTHKEDL--NGGSLXDY 159

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score = 86.7 bits (213), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 5/152 (3%)
Query: 20  RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
           R ++L+GRTG GKSATGNSILG++ F +  G++ VT  C   +    D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 80  FDSSAGSEFVG-KEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFD 138
           F S       G +E   C  L+  G HA+L+V +   RF+ +++ AV ++  +FG+ +  
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLV-TQLGRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           +M++VFT  + L     +L DY+ +   + L+
Sbjct: 140 WMVIVFTRKEDLAGG--SLHDYVSNTENRALR 169

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 3   ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTITC 58
           E++I+   K     +   TV++LG+ G GKS+T NS++G +  + S     G   V ++ 
Sbjct: 20  EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 59  EMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG--LAKGGIHAVLVVFSAR-N 115
            M       G  +N+IDTPGL ++     +V  + ++ I   L    I  +L V      
Sbjct: 80  TM------GGFTINIIDTPGLVEAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVY 129
Query: 116 RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           R  + ++  V  +   FGK+I+   ++V T   +   +E + E +      + LK
Sbjct: 130 RVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDELLK 184

>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 3   ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTITC 58
           E++I+   K     +   TV++LG+ G GKS+T NS++G +  + S     G   V ++ 
Sbjct: 20  EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 59  EMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG--LAKGGIHAVLVVFSAR-N 115
            M       G  +N+IDTPGL ++     +V  + ++ I   L    I  +L V      
Sbjct: 80  TM------GGFTINIIDTPGLVEAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVY 129
Query: 116 RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           R  + ++  V  +   FGK+I+   ++V T   +   +E + E +        LK
Sbjct: 130 RVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLK 184

>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 3   ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTITC 58
           E++I+   K     +   TV++LG+ G GKS+T NS++G +  + S     G   V ++ 
Sbjct: 19  EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 78
Query: 59  EMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI-GLAKGGIHAVLVVFSARNRF 117
            M       G  +N+IDTPGL ++     +V  + ++ I G        VL+     + +
Sbjct: 79  TM------GGFTINIIDTPGLVEAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVY 128
Query: 118 SQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           + +E  +  V  +   FGK+I+   ++V T   +   +E + E +        LK
Sbjct: 129 AVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLK 183

>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 3   ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTITC 58
           E++I+   K     +   TV++LG+ G GKS+T NS++G +  + S     G   V ++ 
Sbjct: 20  EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 59  EMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI-GLAKGGIHAVLVVFSARNRF 117
            M       G  +N+IDTPGL ++     +V  + ++ I G        VL+     + +
Sbjct: 80  TM------GGFTINIIDTPGLVEAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVY 129
Query: 118 SQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           + +E  +  V  +   FGK+I+   ++V T   +   +E + E +        LK
Sbjct: 130 AVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLK 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	3e-50
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	6e-50
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	8e-49
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	2e-48
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	2e-45
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	9e-09
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	8e-05

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  161 bits (409), Expect = 3e-50
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 5/169 (2%)

Query: 3   ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKT 62
            ++++         +   T++++G+ G GKS+T NSI+G +    S   S       +  
Sbjct: 23  TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82

Query: 63  TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSA-RNRFSQEE 121
           +    G  +N+IDTPGL +    ++     I   +      I  +L V      R    +
Sbjct: 83  SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138

Query: 122 EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           +     +   FGK I++  IV  T   +   +    +++        L+
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 187

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  160 bits (406), Expect = 6e-50
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 3/168 (1%)

Query: 3   ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKT 62
           E++I+   K     +   TV++LG+ G GKS+T NS++G +  + S   +       +  
Sbjct: 20  EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79

Query: 63  TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE 122
           T+   G  +N+IDTPGL ++   +    + I   +      +   +          + ++
Sbjct: 80  TM--GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDK 136

Query: 123 AAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
             V  +   FGK+I+   ++V T   +   +E + E +        LK
Sbjct: 137 QVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLK 184

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  157 bits (397), Expect = 8e-49
 Identities = 58/157 (36%), Positives = 93/157 (59%), Gaps = 5/157 (3%)

Query: 14  SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNV 73
            P   +  +VL+G+TG GKSATGNSILGRK F +   +  +T  CE +++       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG 133
           +DTPG+FD+   +    KEI++CI L   G HA+L+V     R+++EE  A  ++  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 134 KKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           ++   +MI++FT  D  +  +  L DYL  E P+ ++
Sbjct: 142 ERARSFMILIFTRKD--DLGDTNLHDYL-REAPEDIQ 175

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  156 bits (395), Expect = 2e-48
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 11  KPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQV 70
           K    S  E  ++L+G+TG GKSA GNSIL ++AF++  GS  +T TC          + 
Sbjct: 14  KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNRE 72

Query: 71  VNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPT 130
           + +IDTP +F      E + KE+ +C  L+  G H +L+V     R++ +++ A  R+  
Sbjct: 73  IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKE 131

Query: 131 LFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
           +FG+    + IV+FT  +  + N  +L DY+     K L 
Sbjct: 132 IFGEDAMGHTIVLFTHKE--DLNGGSLMDYMHDSDNKALS 169

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 52.4 bits (125), Expect = 9e-09
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITC-EMKTTVLKDGQVVNVIDTPGLF 80
           V + G TG+GKS+  N++ G    +  A  +GV     E       +   V   D PG+ 
Sbjct: 72  VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIG 131

Query: 81  DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM 140
            ++   +   +++                +  +  RF + +      +     K+     
Sbjct: 132 STNFPPDTYLEKMKF--------YEYDFFIIISATRFKKNDIDIAKAISM-MKKEF---- 178

Query: 141 IVVFTGGDYLEDNEK 155
             V T  D    NE 
Sbjct: 179 YFVRTKVDSDITNEA 193

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQV---VNVIDTP 77
            ++ +G TG GKS   +++   K     A  +   +  +  T  L++  V   + ++ T 
Sbjct: 44  NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTV 103

Query: 78  GLFDSSAGSEFVGKEIVKCI 97
           G F      E   K IV+ I
Sbjct: 104 G-FGDQINKEDSYKPIVEFI 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.92
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.86
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.85
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.82
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.81
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.81
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.79
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.77
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.77
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.77
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.77
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.76
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.74
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.74
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.73
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.73
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.73
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.73
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.72
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.72
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.72
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.72
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.72
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.72
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.72
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.72
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.72
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.72
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.71
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.71
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.71
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.71
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.71
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.71
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.71
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.71
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.71
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.7
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.7
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.7
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.7
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.7
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.7
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.7
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.7
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.7
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.7
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.7
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.69
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.69
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.69
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.69
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.69
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.69
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.69
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.69
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.69
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.69
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.69
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.69
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.69
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.68
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.68
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.68
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.68
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.68
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.68
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.68
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.67
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.67
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.67
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.67
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.67
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.67
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.67
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.67
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.67
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.67
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.67
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.67
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.67
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.66
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.66
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.66
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.66
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.66
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.66
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.66
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.66
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.66
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.66
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.66
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.66
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.66
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.65
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.65
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.65
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.65
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.65
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.65
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.65
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.65
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.65
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.65
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.65
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.64
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.64
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.64
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.64
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.64
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.64
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.64
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.64
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.64
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.64
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.64
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.63
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.63
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.63
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.63
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.63
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.63
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.62
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.62
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.62
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.62
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.62
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.62
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.62
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.62
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.61
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.61
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.61
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.61
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.61
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.61
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.61
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.61
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.6
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.6
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.6
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.6
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.58
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.58
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.58
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.58
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.58
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.58
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.58
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.58
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.57
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.57
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.57
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.57
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.56
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.56
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.56
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.55
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.55
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.55
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.54
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.54
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.54
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.53
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.53
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.29
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.53
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.52
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.52
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.51
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.51
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.5
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.5
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.5
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.47
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.47
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.47
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.47
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.47
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.46
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.46
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.45
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.44
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.44
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.39
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.39
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.38
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.35
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.33
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.32
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.3
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.23
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.23
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.22
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.22
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.21
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.18
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.12
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.12
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.12
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.12
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.09
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.07
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.06
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.05
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.05
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.03
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.03
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.01
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.01
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.99
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.98
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.98
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.97
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.97
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.96
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.95
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.95
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.94
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.94
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.94
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.93
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.93
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.92
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.91
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.9
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.87
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.87
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.86
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.86
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.86
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.86
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.85
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.85
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.84
2og2_A	359	Putative signal recognition particle receptor; nuc	98.84
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.83
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.83
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.83
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.79
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.79
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.78
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.78
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.75
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.75
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.75
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.72
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.71
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.69
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.67
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.67
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.67
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.66
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.65
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.65
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.63
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.62
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.62
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.57
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.57
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.55
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.55
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.54
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.53
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.53
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.49
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.49
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.49
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.48
1g6h_A	257	High-affinity branched-chain amino acid transport	98.47
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.44
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.43
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.43
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.42
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.4
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.36
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.35
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.34
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.31
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.31
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.3
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.28
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.28
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.26
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.26
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.24
2xxa_A	433	Signal recognition particle protein; protein trans	98.24
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.22
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.21
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.21
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.21
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.21
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.17
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.17
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.16
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.16
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.12
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.12
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	98.12
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.11
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.11
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.08
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.08
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.06
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.05
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.04
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.04
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.04
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.03
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.03
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.02
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.01
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.0
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.95
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.95
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.95
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.93
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.91
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.91
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.9
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.89
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.89
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.89
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.88
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.86
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.85
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.85
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.85
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.83
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.82
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.77
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.77
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.77
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.76
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.74
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.74
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.72
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.7
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.7
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.7
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.68
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.67
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.65
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.65
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.63
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.62
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.6
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.6
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.59
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.58
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.57
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.56
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.56
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.55
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.54
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.53
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.52
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.52
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.52
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.52
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.51
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.5
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.49
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.48
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.48
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.47
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.47
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.47
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.46
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.46
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.45
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.43
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.43
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.43
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.42
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.42
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.42
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.41
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.41
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.41
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.4
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.39
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.38
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.38
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.37
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.36
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.35
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.35
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.35
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.34
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.34
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.33
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.32
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.32
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.32
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.31
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.31
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.31
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.31
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.31
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.31
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.3
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.29
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.29
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.29
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.29
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.28
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.27
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.26
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.25
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.25
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.25
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.24
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.24
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.24
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.23
1via_A	175	Shikimate kinase; structural genomics, transferase	97.23
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.23
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.23
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.23
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.23
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.22
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.2
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.2
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.2
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.2
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.19
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.19
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.18
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.16
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.15
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.14
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.13
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.13
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.12
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.09
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.09
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.08
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.08
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.07
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.06
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.06
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.05
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.03
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.03
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.02
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.02
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.01
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.99
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.96
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.94
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.89
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.89
3bos_A	242	Putative DNA replication factor; P-loop containing	96.88
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.88
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.86
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.86
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.86
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.86
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.86
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.85
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.85
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.85
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.84
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.83
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.82
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.82
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.81
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.81
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.8
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.78
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.77
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.77
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.77
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.75
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.74
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.72
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.71
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.7
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.7
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.69
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.68
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.67
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.66
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.65
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.63
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.63
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.62
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.61
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.56
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.55
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.54

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.92  E-value=4.7e-24  Score=152.30  Aligned_cols=144  Identities=40%  Similarity=0.715  Sum_probs=99.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      +.....+|+|+|++|+|||||+|+|+|......+....+.|..+......+ .+..+.+|||||+.++.........++.
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHH
Confidence            345568999999999999999999999876544433334555555555666 7789999999999987666666677888


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG  162 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~  162 (170)
                      ..+.....++|++++|+++. +++..+...+..+.+.++.....|+++|+||+|++..  ..+++++.
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~  168 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLR  168 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------
T ss_pred             HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHH
Confidence            88878888999999999997 6777788888888887776555699999999999876  35555544

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=1.1e-21  Score=141.57  Aligned_cols=136  Identities=34%  Similarity=0.560  Sum_probs=103.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      +..+..+|+|+|++|+|||||+|+|++...........+.|.........+ .+..+.++||||+.++..........+.
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            344568999999999999999999998765443333322444444445555 6789999999999987766665666667


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEE-cCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFT-GGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t-k~D~~~~  152 (170)
                      ..+......+|++++|+++. +++..+..+++++.+.++.....|.++|+| |+|+...
T Consensus        97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~  154 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG  154 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred             HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence            77667788999999999998 588888888899998877654568888888 9998854

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.86  E-value=1.5e-20  Score=135.85  Aligned_cols=143  Identities=24%  Similarity=0.371  Sum_probs=103.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      .+..+|+++|.+|+|||||+|+|++........ ..+.|.........+ .+..+.++||||+.++..........+..+
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            356899999999999999999999876432221 223344444444555 678999999999988755444444434333


Q ss_pred             HHhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhh
Q 046239           97 IGLAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGH  163 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~  163 (170)
                      +  ...++|++++|++++ .+++..+..+++.+.+.++.....|+++|+||+|+...+...+++++++
T Consensus       112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~  177 (262)
T 3def_A          112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK  177 (262)
T ss_dssp             T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred             H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence            3  235789999998875 3577778889999999888776679999999999865544567777654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.85  E-value=4e-20  Score=134.22  Aligned_cols=142  Identities=23%  Similarity=0.359  Sum_probs=97.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+|+++|.+|+|||||+|+|++........ ..+.+.......... .+..+.++||||+.++..........+..+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            346799999999999999999999876432221 222333333333444 677899999999987644333333333222


Q ss_pred             HHhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239           97 IGLAKGGIHAVLVVFSARN-RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG  162 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~  162 (170)
                      +  ...++|++++|++++. .++..+..+++.+.+.++...+.|+++|+||+|+....+.+++++++
T Consensus       115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~  179 (270)
T 1h65_A          115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS  179 (270)
T ss_dssp             T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHH
T ss_pred             h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHH
Confidence            1  2457899999988753 57777888888898887766556999999999987654335555543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.82  E-value=9.5e-19  Score=128.75  Aligned_cols=127  Identities=23%  Similarity=0.208  Sum_probs=90.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ....|+++|++|+|||||+|+|+|........ .++.|.......... .+..+.++||||+.++.   ......+....
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~   80 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEV   80 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHH
Confidence            34679999999999999999999976532211 112222222222233 67789999999998753   34445566666


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..++..+|++++|+|++++++..+..+++.+.+...   ..|+++|+||+|+...
T Consensus        81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~~  132 (301)
T 1wf3_A           81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKY  132 (301)
T ss_dssp             HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSS
T ss_pred             HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCCc
Confidence            777889999999999987888887666666665421   2599999999998865

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.81  E-value=4.5e-19  Score=130.92  Aligned_cols=129  Identities=20%  Similarity=0.301  Sum_probs=93.0

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      ++..+...|+++|.+|+|||||+|+|+|...... ....+.|.......... . +..+.++||||+.++. ........
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~   81 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHS   81 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHH
Confidence            4556667899999999999999999999765322 12223333333333344 5 7889999999998764 22445566


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccceEEEEEEcCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAA-VHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      +...+..+...+|++++|+|++++.+..+... ++.+...     ..|+++|+||+|+.
T Consensus        82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~  135 (308)
T 3iev_A           82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI  135 (308)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence            66666677778899999999987888887665 5555542     25999999999998

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.81  E-value=8.8e-19  Score=123.34  Aligned_cols=132  Identities=14%  Similarity=0.175  Sum_probs=89.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~   93 (170)
                      .....+|+++|.+|+|||||+|+|++...........+.|............+..+.++||||+.+......  .....+
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            345689999999999999999999997632121223344444444444322467899999999876433322  111222


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..........+|++++|+|+.+.++..+..+++++.+.     ..|+++|+||+|+...
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~~  159 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLTR  159 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSCH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEeccccCCh
Confidence            22222234568999999999888888887777777662     2599999999999875

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.79  E-value=1.1e-17  Score=115.29  Aligned_cols=128  Identities=21%  Similarity=0.243  Sum_probs=81.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .....+|+++|++|+|||||+|+|++...........+.|.......  .  +..+.++||||+.++..... ....+..
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~-~~~~~~~   94 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKS-EREAWGR   94 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHH-HHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHH-HHHHHHH
Confidence            34568999999999999999999998752222122223333333222  2  34799999999876543322 1222222


Q ss_pred             HHHh---ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           96 CIGL---AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        96 ~~~~---~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ....   ....+|++++|+|+.++.+..+..+++++.+.     ..|+++|+||+|+....
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~  150 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIPKG  150 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGG
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCChH
Confidence            2222   23456999999999878888877777766552     24999999999998763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.77  E-value=1.5e-17  Score=112.80  Aligned_cols=127  Identities=18%  Similarity=0.203  Sum_probs=85.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ..+..+|+++|++|+|||||++++++........  .+.+.......+.+ .+..+.++||||+..+....         
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~---------   72 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMR---------   72 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSC---------
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHH---------
Confidence            4567899999999999999999999865432211  11222222333444 66788999999997653221         


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHh
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL  161 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~  161 (170)
                        ......+|++++|+|+++.........+..+..   ..  .|+++|+||+|+.....+.+.+.+
T Consensus        73 --~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~---~~--~p~ilv~nK~Dl~~~~~~~~~~~~  131 (178)
T 2lkc_A           73 --ARGAQVTDIVILVVAADDGVMPQTVEAINHAKA---AN--VPIIVAINKMDKPEANPDRVMQEL  131 (178)
T ss_dssp             --CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG---GS--CCEEEEEETTTSSCSCHHHHHHHH
T ss_pred             --HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh---CC--CCEEEEEECccCCcCCHHHHHHHH
Confidence              135678899999999986666665555544432   12  599999999999875433444444

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.77  E-value=1.1e-17  Score=111.76  Aligned_cols=122  Identities=25%  Similarity=0.249  Sum_probs=83.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|++|+|||||++++++...... ....+.+.........+ .+..+.++||||......    ....+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV-ADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeec-cCCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence            5799999999999999999998653211 11223333334444444 567899999999986432    12233444445


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++++|+|+.+.++..+..+.+++.+.     ..|+++|.||+|+.+.
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~  123 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-----GKPVILVATKVDDPKH  123 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-----TCCEEEEEECCCSGGG
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-----CCCEEEEEECcccccc
Confidence            67788999999999877777776666666552     2599999999998765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.77  E-value=5.2e-18  Score=115.14  Aligned_cols=127  Identities=23%  Similarity=0.223  Sum_probs=80.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ++.+|+++|++|+|||||+|+|++....... ..++.+.......+.+ .+..+.++||||+.++....+..  .+... 
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~--~~~~~-   77 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERI--GIERA-   77 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHH--HHHHH-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHH--HHHHH-
Confidence            5678999999999999999999986532111 1222333233334444 56678999999997642111111  11111 


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ......+|++++|+|+++..+..+..+++.+.+.....  .|+++|.||+|+..
T Consensus        78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITG  129 (172)
T ss_dssp             HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHC
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCc
Confidence            12346789999999997665555555666665543222  58999999999753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.77  E-value=6.9e-17  Score=111.01  Aligned_cols=128  Identities=19%  Similarity=0.191  Sum_probs=85.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKE   92 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~   92 (170)
                      +.....+|+++|++|+|||||+|++++...... ....+.+.......    .+..+.++||||+........  .....
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHH
Confidence            345567999999999999999999998763222 22223333322222    245788999999865332221  11222


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +..........++++++|+|+....+..+...++++...     ..|+++|+||+|+...
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~  148 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM  148 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh
Confidence            222222334667999999999877777777777777664     2599999999999865

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.76  E-value=1.2e-17  Score=128.82  Aligned_cols=123  Identities=23%  Similarity=0.288  Sum_probs=85.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      ++|+++|.+|+|||||+|.|++...... ...++.|.........+ .+..+.+|||||+....  .+.....+..++..
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence            4799999999999999999998764322 22345665556666667 78889999999997531  11122345556666


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      +...+|++++|+|+..+++..+..+.+++.+.     ..|+++|+||+|..+
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~  124 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLR  124 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHH
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcc
Confidence            77889999999999888888887777776653     259999999999753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.74  E-value=6.7e-17  Score=114.33  Aligned_cols=131  Identities=16%  Similarity=0.088  Sum_probs=78.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+|+++|.+|+|||||+|+|++......  .....|.........+ .+..+.+|||||+.+........ .+.. .
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~-~~~~-~  101 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNT-IEMT-T  101 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCH-HHHH-H
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhh-HHHH-H
Confidence            5568999999999999999999998765322  1222344444444444 56789999999997543211111 1111 1


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +......+|++++|+|+++..+........++..+.......|+++|+||+|+...
T Consensus       102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~  157 (228)
T 2qu8_A          102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM  157 (228)
T ss_dssp             HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred             HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence            12234677999999999755442222223333333221113599999999998765

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.74  E-value=6.3e-17  Score=117.60  Aligned_cols=129  Identities=19%  Similarity=0.263  Sum_probs=78.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCC----CCceeEEEeeEEEEee-CC--ceEEEEeCCCCCCCCCCchHH-
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTITCEMKTTVLK-DG--QVVNVIDTPGLFDSSAGSEFV-   89 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~-   89 (170)
                      ...+|+++|.+|+|||||+|+|++.........    ....|........... .+  ..+.++||||+.++......+ 
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            357899999999999999999998765443210    0012222222222221 22  378999999997654433221 


Q ss_pred             --H----HHHHHHHHh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           90 --G----KEIVKCIGL---------AKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        90 --~----~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        .    .++..+...         ...++|+++++++.. +++...+..+++.+..      ..|+++|+||+|.+..
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH
Confidence              1    111222221         123578888888664 4778888777777665      2599999999999865

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.73  E-value=5.7e-17  Score=111.30  Aligned_cols=128  Identities=16%  Similarity=0.063  Sum_probs=79.5

Q ss_pred             CCCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchH
Q 046239           10 WKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEF   88 (170)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~   88 (170)
                      +..........+|+++|++|+|||||+|++++...........+.+.  ........ ....+.++||||...+...   
T Consensus        13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---   87 (189)
T 2gf9_A           13 GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTVYRHDKRIKLQIWDTAGQERYRTI---   87 (189)
T ss_dssp             -CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEE--EEEEEEETTEEEEEEEEECCSCCSSCCS---
T ss_pred             CCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEE--EEEEEEECCeEEEEEEEeCCCcHHHhhh---
Confidence            33444445567999999999999999999998664322222222222  22222221 2347889999998764322   


Q ss_pred             HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           89 VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                              .......+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+...
T Consensus        88 --------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~  142 (189)
T 2gf9_A           88 --------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDE  142 (189)
T ss_dssp             --------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred             --------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc
Confidence                    2245678899999999974322222 2344444443212  2599999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.73  E-value=1.1e-16  Score=109.45  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=78.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      .+..+|+++|++|+|||||+|++++.. ......    |.........+ .+..+.++||||..+           +...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~----t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~   78 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISP----TLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSY   78 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCC----CSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccc----cCccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence            567899999999999999999999876 222121    22223334444 678899999999853           3334


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      ......++|++++|+|++++.+..+  ..+++.+....  ....|+++|.||+|+...
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (186)
T 1ksh_A           79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA  134 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence            4456788999999999975533332  22233333321  123599999999998765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.73  E-value=2.6e-17  Score=110.80  Aligned_cols=120  Identities=18%  Similarity=0.120  Sum_probs=73.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|++|+|||||+|++++...........+.+  ........ .+  ..+.++||||..++           .
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~   69 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLNI-GGKRVNLAIWDTAGQERF-----------H   69 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEES-SSCEEEEEEEECCCC---------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceE--EEEEEEEE-CCEEEEEEEEECCCcHhh-----------h
Confidence            345789999999999999999999765432222222222  22222333 22  36788999997642           2


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+...+|++++|+|+.+..+... ..+++.+.+.....  .|+++|.||+|+.+.
T Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~  126 (170)
T 1z08_A           70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKE  126 (170)
T ss_dssp             ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGG
T ss_pred             hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccc
Confidence            233446778999999999974332222 23444444443223  599999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.73  E-value=6.2e-17  Score=111.74  Aligned_cols=122  Identities=14%  Similarity=0.076  Sum_probs=78.0

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc-ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHH
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGK   91 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~   91 (170)
                      ..+.....+|+++|.+|+|||||++.+++..... ....+.+    .....+.. ....+.+|||||...+         
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~---------   76 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETFEK-GRVAFTVFDMGGAKKF---------   76 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEEEE-TTEEEEEEEECCSGGG---------
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEEEe-CCEEEEEEECCCCHhH---------
Confidence            4556677899999999999999999999876543 2122222    23333444 6788999999999753         


Q ss_pred             HHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---------ccceEEEEEEcCCCCCC
Q 046239           92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK---------IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~ivv~tk~D~~~~  152 (170)
                        ......+..++|++++|+|+++..+...  ..+++...+...         ...|+++|.||+|+...
T Consensus        77 --~~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A           77 --RGLWETYYDNIDAVIFVVDSSDHLRLCV--VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             --GGGGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             --HHHHHHHHhcCCEEEEEEECCcHHHHHH--HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence              2233356788999999999985533332  223333333220         13599999999998866

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.72  E-value=1.9e-16  Score=106.57  Aligned_cols=117  Identities=17%  Similarity=0.127  Sum_probs=78.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      .+..+|+++|++|+|||||+|++++......     ..|.........+ ....+.++||||...+           ...
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----------~~~   67 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RPY   67 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEEE-CCEEEEEEECCCChhh-----------hHH
Confidence            4568999999999999999999987654221     1122233344555 5788999999998642           222


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      +..+...+|++++|+|+++..+...  ...++...+..  ....|+++|+||+|+...
T Consensus        68 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A           68 WRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             GGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence            3346678999999999975543332  22333333322  123599999999998765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.72  E-value=1.6e-17  Score=111.63  Aligned_cols=119  Identities=18%  Similarity=0.127  Sum_probs=74.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..+|+++|++|+|||||++++++...........+.+.  ......+. ....+.++||||...+           ....
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~~   69 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF--LTQRVTINEHTVKFEIWDTAGQERF-----------ASLA   69 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEEEECCEEEEEEEEECCCChhh-----------hhhh
Confidence            46899999999999999999997664322222222222  22223331 1237889999997642           1122


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+|+++..+..+ ..++..+......  ..|+++|.||+|+...
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQE  123 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGS
T ss_pred             hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence            334567899999999974422222 2334444443322  2589999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.72  E-value=1.6e-17  Score=111.81  Aligned_cols=120  Identities=19%  Similarity=0.104  Sum_probs=75.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +..+|+++|++|+|||||+|++++...........+.+...  ....+. ....+.++||||+..+           ...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~   71 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERF-----------RAL   71 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhh-----------hcc
Confidence            45789999999999999999999876433222222322222  222221 1356889999998642           112


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......+|++++|+|+++..+... ..+++.+......  ..|+++|.||+|+...
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~  126 (170)
T 1z0j_A           72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDV  126 (170)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGG
T ss_pred             cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCccccc
Confidence            2234567899999999974433222 3344445443222  2489999999998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.72  E-value=1.1e-17  Score=128.90  Aligned_cols=123  Identities=20%  Similarity=0.184  Sum_probs=77.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|++|+|||||+|.|+|...... ...++.|.........+ .+..+.++||||+....   .....++..++..
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            6899999999999999999998654322 22345555555555555 57789999999997421   1144456666666


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +...+|++++|+|+.++.+..+..+.+.+..     ...|+++|+||+|....
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~  126 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM  126 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC---
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc
Confidence            6778899999999988888887666665543     12599999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.72  E-value=3.3e-17  Score=111.45  Aligned_cols=121  Identities=21%  Similarity=0.187  Sum_probs=75.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ....+|+++|++|+|||||+|++++...........+.+..  .....+. ....+.++||||...+.           .
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~   76 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAGQERYH-----------S   76 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE--EEEEEETTEEEEEEEEECCCSGGGG-----------G
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE--EEEEEECCEEEEEEEEeCCCChhhh-----------h
Confidence            44578999999999999999999986543322222222222  2222221 13478999999976421           1


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+...
T Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~  132 (181)
T 2efe_B           77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDA  132 (181)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred             hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCccccc
Confidence            12234567899999999974433222 3344444443222  2589999999998754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.72  E-value=4.3e-17  Score=111.92  Aligned_cols=130  Identities=17%  Similarity=0.151  Sum_probs=76.0

Q ss_pred             CCCCCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCC
Q 046239            8 GDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAG   85 (170)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~   85 (170)
                      +.........+..+|+++|.+|+|||||+|++++...........+.+  .....+.+ .+  ..+.++||||...    
T Consensus         9 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~l~Dt~G~~~----   81 (189)
T 1z06_A            9 GSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD--FRERAVDI-DGERIKIQLWDTAGQER----   81 (189)
T ss_dssp             ----------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCC--EEEEEEEE-TTEEEEEEEEECCCSHH----
T ss_pred             ccccCCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceE--EEEEEEEE-CCEEEEEEEEECCCchh----
Confidence            334444555667899999999999999999999765432222222222  22223333 33  4789999999753    


Q ss_pred             chHHHHHHH-HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           86 SEFVGKEIV-KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        86 ~~~~~~~~~-~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                             +. .....+...+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|+...
T Consensus        82 -------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  142 (189)
T 1z06_A           82 -------FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSA  142 (189)
T ss_dssp             -------HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGG
T ss_pred             -------hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence                   22 233345678899999999974322222 234444444431 122589999999998654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.72  E-value=1.6e-16  Score=109.12  Aligned_cols=120  Identities=18%  Similarity=0.110  Sum_probs=78.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ...+..+|+++|.+|+|||||+|.+++.........    |.......+.. ....+.++||||...           +.
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~   81 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIP----TVGFNMRKITK-GNVTIKLWDIGGQPR-----------FR   81 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC----CCSEEEEEEEE-TTEEEEEEEECCSHH-----------HH
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCC----CCceeEEEEEe-CCEEEEEEECCCCHh-----------HH
Confidence            344567999999999999999999997654322121    22222333444 678899999999753           22


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+..++|++++|+|+++.-+...  ...++.+.+..  ....|+++|+||+|+...
T Consensus        82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           82 SMWERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             TTHHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             HHHHHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence            333345578899999999974433222  22333333321  123599999999998765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=2.8e-17  Score=113.22  Aligned_cols=122  Identities=19%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .....+|+++|++|+|||||+|++++...........+.+.......... ....+.++||||...+.           .
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~   87 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFH-----------S   87 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGG-----------G
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhH-----------h
Confidence            34567999999999999999999998664322222333332222222111 23578999999976431           1


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ........+|++++|+|+++..+... ..++..+.+....  ..|+++|+||+|+..
T Consensus        88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~  142 (192)
T 2fg5_A           88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSD  142 (192)
T ss_dssp             GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred             hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECccccc
Confidence            12234567899999999975433222 2334444443222  259999999999875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.72  E-value=9.9e-18  Score=129.84  Aligned_cols=125  Identities=21%  Similarity=0.200  Sum_probs=81.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..++|+|+|++|+|||||+|+|+|...... ...++.|.........+ .+..+.++||||+...   .+....++..++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~   96 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQA   96 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHHH
Confidence            357899999999999999999998654322 22345555555555555 5778999999998732   122345566666


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...+|++++|+|..++++..+..+++++.+.     ..|+++|+||+|..+.
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~~~  146 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRT-----KKPVVLAVNKLDNTEM  146 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC-----CSCEEEEEECC-----
T ss_pred             HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc-----CCCEEEEEECccchhh
Confidence            6667788999999999888999888777777652     2599999999998654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.72  E-value=2.1e-16  Score=107.26  Aligned_cols=120  Identities=18%  Similarity=0.128  Sum_probs=76.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      .....+|+++|++|+|||||+|+|++.......  ....+.......+.+ .+  ..+.++||||...+...        
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------   74 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTI--------   74 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CC--TTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSC--------
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCcc--CCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhh--------
Confidence            345579999999999999999999987654222  222333333344444 44  56889999997654322        


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         ...+...+|++++|+|++++.+... ..++..+....   ...|+++|+||+|+...
T Consensus        75 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~  128 (181)
T 3tw8_B           75 ---TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPER  128 (181)
T ss_dssp             ---CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGG
T ss_pred             ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchh
Confidence               2235678899999999975322222 22333333322   23599999999997654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.71  E-value=2.6e-17  Score=126.83  Aligned_cols=128  Identities=19%  Similarity=0.211  Sum_probs=82.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHH-HHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGK-EIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~-~~~~~   96 (170)
                      ...+|+++|.+|+|||||+|+|++....... ...+.|.......+.+ .+..+.+|||||+.+.....+.... .....
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence            4579999999999999999999987643221 1233444444444555 6778999999999654331111111 11111


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                       ......+|++++|+|+.++.+.++..++..+.+.     ..|+++|+||+|+.+..
T Consensus       252 -~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~  302 (436)
T 2hjg_A          252 -LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKD  302 (436)
T ss_dssp             -HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCC
T ss_pred             -HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcc
Confidence             1133456999999999988888887766655542     25999999999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.71  E-value=1.3e-16  Score=110.66  Aligned_cols=120  Identities=14%  Similarity=0.110  Sum_probs=76.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ...+|+++|++|+|||||++.|++...........+.+.  ........ ....+.+|||||+..           +...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~   73 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTIYRNDKRIKLQIWDTAGLER-----------YRTI   73 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEE--EEEEEEETTEEEEEEEEEECCSGG-----------GHHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE--EEEEEEECCeEEEEEEEECCCchh-----------hcch
Confidence            347899999999999999999998764332222222222  22222221 134789999999864           2233


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+...+|++++|+|+.+..+... ..++..+......  ..|+++|+||+|+...
T Consensus        74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~  128 (203)
T 1zbd_A           74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDE  128 (203)
T ss_dssp             HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTS
T ss_pred             HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCcc
Confidence            4456778899999999974322222 2333444333212  2599999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.71  E-value=7e-17  Score=110.34  Aligned_cols=120  Identities=17%  Similarity=0.135  Sum_probs=77.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|++|+|||||+|.+++..........  .+.......... .+  ..+.++||||...           +.
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~   73 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHT--IGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FR   73 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC--SEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--cceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence            44579999999999999999999976543222212  222222333333 33  4788999999764           23


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .........+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+...
T Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~  130 (186)
T 2bme_A           74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDAD  130 (186)
T ss_dssp             HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG
T ss_pred             HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc
Confidence            344567788999999999974322222 2334444443322  2599999999998643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.71  E-value=5.1e-17  Score=109.17  Aligned_cols=120  Identities=18%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +..+|+++|++|+|||||+|++++...........+.+...  ...... ....+.++||||...+           ...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~-----------~~~   71 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTAGQERY-----------HSL   71 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCEEEEEEEEeCCCcHHh-----------hhh
Confidence            35789999999999999999999765432222222222222  222221 2357889999998642           112


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......+|++++|+|++++.+... ..++..+......  ..|+++|.||+|+...
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~  126 (170)
T 1r2q_A           72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANK  126 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG
T ss_pred             hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccc
Confidence            2334577899999999974422222 2333444433222  2489999999998653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.71  E-value=4.8e-17  Score=112.02  Aligned_cols=121  Identities=17%  Similarity=0.182  Sum_probs=78.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|++|+|||||+|+|++........  ...+.......+.+ .+  ..+.++||||...+..          
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------   80 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT----------   80 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT----------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh----------
Confidence            445799999999999999999999765433222  22233333344444 33  4688999999765321          


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                       ....+...+|++++|+|+.+..+... ..++..+.......  .|+++|+||+|+....
T Consensus        81 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~  137 (196)
T 3tkl_A           81 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKK  137 (196)
T ss_dssp             -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTC
T ss_pred             -hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccccccc
Confidence             12234567899999999974322221 33444454443322  4999999999987653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.71  E-value=2.2e-16  Score=110.38  Aligned_cols=120  Identities=18%  Similarity=0.206  Sum_probs=74.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      .....+|+++|.+|+|||||++++++........   +.+  .....+.+..  ...+.+|||||+..           +
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~   67 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT---SIT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------L   67 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC---CCS--CEEEEEECSSTTCCEEEEEECCCCHH-----------H
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC---Ccc--eeeEEEEecCCCccEEEEEECCCChh-----------H
Confidence            3456899999999999999999999765322211   111  2222344422  46799999999963           2


Q ss_pred             HH-HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccceEEEEEEcCCCCCC
Q 046239           94 VK-CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK----KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~-~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~tk~D~~~~  152 (170)
                      .. ....+...+|++++|+|+.+ +........+++.+.+..    ....|+++|.||+|+...
T Consensus        68 ~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           68 RFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             HHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             HHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence            22 33345678899999999973 222233334444433211    223599999999998865

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.71  E-value=3.3e-17  Score=112.93  Aligned_cols=122  Identities=16%  Similarity=0.205  Sum_probs=73.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      ......+|+++|.+|+|||||+|+|++...........+  .......+.+ .+  ..+.++||||...+          
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~----------   88 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG--VDFKIKTVEL-RGKKIRLQIWDTAGQERF----------   88 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTT--EEEEEEEEEE-TTEEEEEEEEEECCSGGG----------
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccc--eeEEEEEEEE-CCeEEEEEEEeCCCcHHH----------
Confidence            345567899999999999999999998764322222222  2223333333 33  46889999997642          


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       ..........+|++++|+|+++..+..+ ..+++.+.......  .|+++|+||+|+...
T Consensus        89 -~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~  146 (192)
T 2il1_A           89 -NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD  146 (192)
T ss_dssp             -HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred             -HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccc
Confidence             1222233456799999999975433332 23344444433222  599999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.71  E-value=8.3e-17  Score=110.79  Aligned_cols=123  Identities=19%  Similarity=0.102  Sum_probs=75.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .....+|+++|++|+|||||+|.|++.........+.+.+.......... ....+.++||||+..+..           
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------   89 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT-AAVKAQIWDTAGLERYRA-----------   89 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT-EEEEEEEEEESCCCTTCT-----------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCCchhhhh-----------
Confidence            34457899999999999999999998664332222222222222121111 235688999999976421           


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+|+.+..+... ..++..+.....  ...|+++|+||+|+...
T Consensus        90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~  145 (193)
T 2oil_A           90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQA  145 (193)
T ss_dssp             THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGG
T ss_pred             hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccc
Confidence            12234567899999999974322221 233333333221  23589999999998754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.71  E-value=3.9e-17  Score=110.74  Aligned_cols=121  Identities=15%  Similarity=0.138  Sum_probs=74.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ....+|+++|.+|+|||||+|.+++...........+.+...  ...... ....+.++||||...+.           .
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~-----------~   79 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT--RIIEVSGQKIKLQIWDTAGQERFR-----------A   79 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEE--EEEEETTEEEEEEEEECTTGGGTC-----------H
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCeEEEEEEEECCCChHhh-----------h
Confidence            345799999999999999999999766432222222222222  222221 12468899999976431           1


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+|+++..+..+ ..++..+......  ..|+++|+||+|+...
T Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~  135 (179)
T 1z0f_A           80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQ  135 (179)
T ss_dssp             HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred             hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc
Confidence            22234456799999999974432222 2344444443322  2589999999998654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.70  E-value=3.2e-16  Score=112.85  Aligned_cols=122  Identities=18%  Similarity=0.233  Sum_probs=78.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~~~~   97 (170)
                      ++|+++|.+|+|||||+|+|+|.......  .++.|.......+.+ .+..+.++||||+.++.....  .....+....
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            57999999999999999999998643322  234555555555555 677999999999987653210  1111111111


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       ....++|++++|+|+++ . .....+..++.+.     ..|+++|+||+|....
T Consensus        79 -~~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~~-----~~pvilv~NK~Dl~~~  125 (256)
T 3iby_A           79 -VIDLEYDCIINVIDACH-L-ERHLYLTSQLFEL-----GKPVVVALNMMDIAEH  125 (256)
T ss_dssp             -HHHSCCSEEEEEEEGGG-H-HHHHHHHHHHTTS-----CSCEEEEEECHHHHHH
T ss_pred             -HhhCCCCEEEEEeeCCC-c-hhHHHHHHHHHHc-----CCCEEEEEEChhcCCc
Confidence             11268999999999973 1 1222333333332     2599999999997644

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.70  E-value=2.8e-16  Score=109.26  Aligned_cols=120  Identities=18%  Similarity=0.166  Sum_probs=77.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|++|+|||||++.|++...........+.  ......+.+ .+  ..+.++||||...+...         
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---------   73 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV--DFKIKTVEL-DGKTVKLQIWDTAGQERFRTI---------   73 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCC--CEEEEEEEE-TTEEEEEEEECCTTTTTTTCC---------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc--eeEEEEEEE-CCEEEEEEEEeCCChHHHHHH---------
Confidence            34579999999999999999999986643222222222  222223333 33  37899999998764322         


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        ...+...+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+...
T Consensus        74 --~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~  128 (206)
T 2bcg_Y           74 --TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDK  128 (206)
T ss_dssp             --CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred             --HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc
Confidence              2245678899999999974433222 2334444443322  2589999999998764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.70  E-value=8.9e-17  Score=118.28  Aligned_cols=123  Identities=20%  Similarity=0.252  Sum_probs=82.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCC-CCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF-DSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~~~~~~~   96 (170)
                      +..+++++|++|+|||||+|+|+|........ ..+.|.........+ ....+.++||||+. .+   .......+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~-~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~   81 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKA   81 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCC-CCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence            44689999999999999999999986532211 122222222222333 66789999999997 21   11122233333


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      +......+|++++|+|+.+ ++..+..+++.+..     ...|+++++||+|...
T Consensus        82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred             HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence            3456788999999999986 88887766655542     1259999999999886

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.70  E-value=2.8e-16  Score=105.17  Aligned_cols=114  Identities=15%  Similarity=0.113  Sum_probs=75.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|++|+|||||++++++...... .    .|.........+ .+..+.++||||...           +......
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~   63 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTT-I----PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH   63 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC-C----CCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcc-c----CcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence            3789999999999999999987553221 1    122223334444 678899999999964           2233344


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      ...++|++++|+|++++-+...  ...++.+....  ....|+++|.||+|+...
T Consensus        64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA  116 (164)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence            6688999999999975433222  22344443321  123599999999998765

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.70  E-value=1.2e-16  Score=109.84  Aligned_cols=121  Identities=15%  Similarity=0.102  Sum_probs=74.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      .....+|+++|++|+|||||++.+++...........+.+  .....+.. .+  ..+.++||||...+...        
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------   86 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVNI-DGKQIKLQIWDTAGQESFRSI--------   86 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEEE-TTEEEEEEEECCTTGGGTSCC--------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEE-CCEEEEEEEEECCCchhhhhh--------
Confidence            3445689999999999999999999765432211111211  22223333 33  47889999998754321        


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         .......+|++++|+|+++..+..+ ..++..+......  ..|+++|+||+|+...
T Consensus        87 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~  141 (191)
T 2a5j_A           87 ---TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESR  141 (191)
T ss_dssp             ---CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred             ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCCc
Confidence               1234567899999999974322222 2344444443222  2589999999998653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.70  E-value=2.2e-16  Score=114.78  Aligned_cols=123  Identities=21%  Similarity=0.243  Sum_probs=80.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~~~   96 (170)
                      ..+|+++|.+|+|||||+|+|+|...... . .++.|.......+.+ .+..+.++||||+.++.....  .....+...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~-~-~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG-N-WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEE-E-CTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccC-C-CCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            57899999999999999999999874222 2 234555555555555 577899999999998653211  111122111


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      . .....+|++++|+|+.+ . .....+..++.+.   .  .|+++|+||+|+...
T Consensus        80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~---~--~p~ivv~NK~Dl~~~  127 (274)
T 3i8s_A           80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL---G--IPCIVALNMLDIAEK  127 (274)
T ss_dssp             H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH---T--CCEEEEEECHHHHHH
T ss_pred             H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc---C--CCEEEEEECccchhh
Confidence            1 12468899999999873 1 2233444444443   2  599999999997643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.70  E-value=1.1e-16  Score=124.01  Aligned_cols=127  Identities=18%  Similarity=0.222  Sum_probs=85.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC----chHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG----SEFVGK   91 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~~~~~~   91 (170)
                      .....+|+++|.+|+|||||+|++++....... ...+.|.......+.+ .+..+.+|||||+.+....    +.....
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHH
Confidence            345689999999999999999999987543222 2223444433344555 6778999999998643211    111111


Q ss_pred             HHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ....    +...+|++++|+|+.++++..+..++..+.+.   .  .|+++|+||+|+.+..
T Consensus       270 ~~~~----~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~---~--~~~ilv~NK~Dl~~~~  322 (456)
T 4dcu_A          270 RALK----AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKD  322 (456)
T ss_dssp             HHHH----HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCC
T ss_pred             HHHH----HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc---C--CCEEEEEEChhcCCCc
Confidence            1122    33456999999999988888888887777662   2  5999999999998654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.70  E-value=3.3e-16  Score=108.59  Aligned_cols=125  Identities=21%  Similarity=0.173  Sum_probs=73.2

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      .+..+..+|+++|.+|+|||||+|+|++...........+... ........ ....+.++||||...+...        
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~l~Dt~G~~~~~~~--------   88 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGK-DEFHLHLVDTAGQDEYSIL--------   88 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCC--------
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECC-EEEEEEEEECCCccchHHH--------
Confidence            3455678999999999999999999998765322222211111 11122211 3456899999998765332        


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         ...+...+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+...
T Consensus        89 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  144 (201)
T 3oes_A           89 ---PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPE  144 (201)
T ss_dssp             ---CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG
T ss_pred             ---HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccc
Confidence               2245678899999999974322221 222232322211 123589999999998754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=3.6e-16  Score=106.15  Aligned_cols=121  Identities=18%  Similarity=0.136  Sum_probs=73.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|++|+|||||+|++++........ .+..+.......... .+  ..+.++||||...+           .
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~   74 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------R   74 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------H
Confidence            455799999999999999999999766432211 111122222222223 33  36889999997642           2


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .........+|++++|+|+.+..+..+ ..++..+......  ..|+++|+||+|+...
T Consensus        75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHE  131 (180)
T ss_dssp             ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSC
T ss_pred             HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCcc
Confidence            333456678899999999974432222 3344444443322  2599999999998864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.70  E-value=2.1e-16  Score=109.24  Aligned_cols=129  Identities=14%  Similarity=0.085  Sum_probs=77.4

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCCCchHHH
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSAGSEFVG   90 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~   90 (170)
                      ........+|+++|.+|+|||||++.+++........   +...........+  .....+.+|||||...+......  
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--   88 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL---FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD--   88 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG---GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC--
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee---eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh--
Confidence            3455667899999999999999999999864432211   1111111111111  14468999999998764322100  


Q ss_pred             HHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           91 KEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        .    ..++.++|++++|+|+++++......+..++.+........|+++|.||+|++..
T Consensus        89 --~----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           89 --Y----EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             --H----HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             --c----ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence              0    1233467999999999866334445555666654222223599999999998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.70  E-value=1.3e-16  Score=108.09  Aligned_cols=121  Identities=20%  Similarity=0.099  Sum_probs=76.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|++|+|||||+|++++...........+  .......+.+ .+  ..+.++||||...           +.
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~   70 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FR   70 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCS--EEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GH
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hh
Confidence            3457899999999999999999997654222122222  2222233333 33  3789999999764           23


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEEcCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK--KIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (170)
                      .....+...+|++++|+++++..+... ..+++.+......  ....|+++|+||+|+..
T Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~  130 (177)
T 1wms_A           71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  130 (177)
T ss_dssp             HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence            344567788999999999974432222 3344444443321  12249999999999873

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.69  E-value=7.8e-16  Score=105.91  Aligned_cols=127  Identities=14%  Similarity=0.077  Sum_probs=79.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      .+..+|+++|++|+|||||++.+++...... .    .|.......+.+ .+..+.++||||...+..           .
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~   83 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-Q----PTWHPTSEELAI-GNIKFTTFDLGGHIQARR-----------L   83 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-C----CCCSCEEEEEEE-TTEEEEEEECCCSGGGTT-----------S
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-c----cCCCCCeEEEEE-CCEEEEEEECCCCHHHHH-----------H
Confidence            4567999999999999999999997654221 1    121122334445 568899999999975321           2


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHhh
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYLG  162 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~~  162 (170)
                      ...+...+|++++|+|++++.+...  ...++.+.+..  ....|+++|.||+|+.... .+.+.++++
T Consensus        84 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  150 (190)
T 1m2o_B           84 WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALG  150 (190)
T ss_dssp             GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred             HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhC
Confidence            2345678899999999985543332  22233333221  1235999999999987642 134444443

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=7.5e-17  Score=108.57  Aligned_cols=122  Identities=18%  Similarity=0.122  Sum_probs=73.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      +..+|+++|++|+|||||+|++++...........+.+.. ....... ....+.++||||..++.           ...
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~~~~~Dt~G~~~~~-----------~~~   68 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDK-SICTLQITDTTGSHQFP-----------AMQ   68 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETT-EEEEEEEEECCSCSSCH-----------HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECC-EEEEEEEEECCCchhhH-----------HHH
Confidence            3478999999999999999999986543222222222221 1111110 12368899999987631           112


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+++++..+... ..++..+.+........|+++|+||+|+...
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~  124 (172)
T 2erx_A           69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS  124 (172)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred             HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence            223345699999999974322221 3444555554332223599999999998654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.69  E-value=1.5e-16  Score=109.33  Aligned_cols=131  Identities=17%  Similarity=0.097  Sum_probs=80.2

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      ....+..+|+++|.+|+|||||+|++++........   ..|.......+.+ .+..+.++||||...+.          
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~----------   81 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR----------   81 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTG----------
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHH----------
Confidence            345567899999999999999999999876322211   1222233444555 57899999999987642          


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc----ccceEEEEEEcCCCCCCCh-hhHHHHh
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK----IFDYMIVVFTGGDYLEDNE-KTLEDYL  161 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ivv~tk~D~~~~~~-~~~~~~~  161 (170)
                       ........++|++++|+|+++..+..  ....++.......    ...|+++|+||+|+..... +.+.+++
T Consensus        82 -~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  151 (190)
T 2h57_A           82 -NLWEHYYKEGQAIIFVIDSSDRLRMV--VAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLL  151 (190)
T ss_dssp             -GGGGGGGGGCSEEEEEEETTCHHHHH--HHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             -HHHHHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHh
Confidence             12234567789999999997432222  1222333322211    2359999999999976521 3444444

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.69  E-value=1.5e-16  Score=108.49  Aligned_cols=129  Identities=13%  Similarity=0.127  Sum_probs=80.2

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      ....+..+|+++|.+|+|||||+|++++...... ....+    .....+.+ .+..+.++||||...+.          
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~----------   79 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVI-NNTRFLMWDIGGQESLR----------   79 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSCEEE-ECCSS----SSCEEEEE-TTEEEEEEEESSSGGGT----------
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCcc-CCcCc----eeeEEEEE-CCEEEEEEECCCCHhHH----------
Confidence            3445568999999999999999999998764221 11112    12233444 67889999999996532          


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHh
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYL  161 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~  161 (170)
                       ........++|++++|+|+++..+...  ...++.+....  ....|+++|+||+|+.... ...+.+++
T Consensus        80 -~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~  147 (181)
T 2h17_A           80 -SSWNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL  147 (181)
T ss_dssp             -CGGGGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             -HHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHh
Confidence             122345678899999999985544333  22333333321  1235999999999987642 13444444

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.69  E-value=2.7e-16  Score=122.05  Aligned_cols=127  Identities=17%  Similarity=0.169  Sum_probs=67.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+.+|+++|++|+|||||+|+|++....... ...+.|.......+.+ .+..+.+|||||+.++...   +........
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~---ve~~gi~~~  306 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEE---IEHEGIRRS  306 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC----------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhH---HHHHHHHHH
Confidence            3567999999999999999999987532221 1233444444455555 7789999999999764211   111112233


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ......+|++++|+|+++..+.... ....++.. +.   ..|+++|+||+|+....
T Consensus       307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~~~  359 (476)
T 3gee_A          307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAA-HP---AAKFLTVANKLDRAANA  359 (476)
T ss_dssp             -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT---TSEEEEEEECTTSCTTT
T ss_pred             HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC---CCCEEEEEECcCCCCcc
Confidence            4467889999999999877665322 12222222 22   25999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.69  E-value=7.3e-16  Score=106.68  Aligned_cols=123  Identities=19%  Similarity=0.063  Sum_probs=72.4

Q ss_pred             CCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHH
Q 046239           12 PTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFV   89 (170)
Q Consensus        12 ~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~   89 (170)
                      .........+|+++|.+|+|||||++.+++.........+.+   ......... .+.  .+.++||||...+...    
T Consensus        13 ~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~----   84 (201)
T 2q3h_A           13 AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF---DNFSAVVSV-DGRPVRLQLCDTAGQDEFDKL----   84 (201)
T ss_dssp             -------CEEEEEECSTTSSHHHHHHHHHC--------CCSS---EEEEEEEEE-TTEEEEEEEEECCCSTTCSSS----
T ss_pred             cCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc---ceeEEEEEE-CCEEEEEEEEECCCCHHHHHH----
Confidence            334556678999999999999999999998653222111111   111122223 333  5679999999865322    


Q ss_pred             HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                             ...+..++|++++|+|+++..+..+.  .++..+.....   ..|+++|.||+|+...
T Consensus        85 -------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           85 -------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED  139 (201)
T ss_dssp             -------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC
T ss_pred             -------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc
Confidence                   22356788999999999744333332  34444544332   3599999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.69  E-value=1.8e-16  Score=106.43  Aligned_cols=119  Identities=21%  Similarity=0.104  Sum_probs=73.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ...+|+++|++|+|||||+|++++.........+.+..  .......+.. ...+.++||||..++...           
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   70 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD--FLERQIQVNDEDVRLMLWDTAGQEEFDAI-----------   70 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSS--EEEEEEEETTEEEEEEEECCTTGGGTTCC-----------
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEE--EEEEEEEECCEEEEEEEEcCCCcHhHHHH-----------
Confidence            45789999999999999999999765422212111111  1222222211 247889999997654221           


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......+|++++|+++++..+... ..++..+....   ...|+++|+||+|+...
T Consensus        71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~  124 (168)
T 1z2a_A           71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDD  124 (168)
T ss_dssp             CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGG
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcc
Confidence            1234567899999999974322221 23344444433   22599999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.69  E-value=4.8e-17  Score=112.66  Aligned_cols=120  Identities=20%  Similarity=0.149  Sum_probs=69.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      ......+|+++|++|+|||||+|++++...........+.+.  ......+ .+  ..+.++||||...+          
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~l~i~Dt~G~~~~----------   90 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF--QMKTLIV-DGERTVLQLWDTAGQERF----------   90 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------C--EEEEEEE-TTEEEEEEEEECTTCTTC----------
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcccee--EEEEEEE-CCEEEEEEEEECCCCcch----------
Confidence            345568999999999999999999997653222111112111  1222222 22  45889999998753          


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                       ..........+|++++|+|+.+..+..+ ..+++.+......  ..|+++|+||+|+.
T Consensus        91 -~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~  146 (199)
T 2p5s_A           91 -RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIR  146 (199)
T ss_dssp             -HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred             -hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccc
Confidence             1122233445799999999974433222 2334444443222  25999999999986

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=4.5e-16  Score=106.64  Aligned_cols=126  Identities=13%  Similarity=0.137  Sum_probs=77.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      .+..+|+++|.+|+|||||++.+++...... ..+.+    .....+.+ .+..+.++||||...+..           .
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~   76 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVI-NNTRFLMWDIGGQESLRS-----------S   76 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSC----SSCEEEEE-TTEEEEEEECCC----CG-----------G
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCCc----cceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence            4568999999999999999999997654321 11111    22333444 678899999999975321           1


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCCh-hhHHHHh
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDNE-KTLEDYL  161 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~~-~~~~~~~  161 (170)
                      ......++|++++|+|+++..+...  ...++.+....  ....|+++|.||+|+..... +.+.+.+
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~  142 (187)
T 1zj6_A           77 WNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL  142 (187)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence            1234567899999999985543333  22233333321  12359999999999876421 3444444

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.69  E-value=3.7e-16  Score=105.58  Aligned_cols=121  Identities=22%  Similarity=0.170  Sum_probs=68.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+|+++|++|+|||||+|.+++....... ...+.+...  ....+ .+  ..+.++||||....         +...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~---------~~~~   69 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKL---------DKSW   69 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEE--EEEEE-TTEEEEEEEECCC----------------CH
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeE--EEEEE-CCEEEEEEEEecCCCCcc---------chhh
Confidence            4578999999999999999999987653321 222333222  22233 33  36789999998752         1112


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+...+|++++|+++++..+... ..++..+.+... ....|+++|.||+|+...
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~  126 (175)
T 2nzj_A           70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC  126 (175)
T ss_dssp             HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred             hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence            22345677899999999974322222 223333333211 113599999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.69  E-value=3e-16  Score=107.95  Aligned_cols=136  Identities=9%  Similarity=0.035  Sum_probs=82.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC------CceeEEEeeEEE---Ee-eCCceEEEEeCCCCCCCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTITCEMKTT---VL-KDGQVVNVIDTPGLFDSSAG   85 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~------~~~t~~~~~~~~---~~-~~~~~~~l~DtpG~~~~~~~   85 (170)
                      .....+|+++|.+|+|||||++.+.+..........      ...|........   .. .....+.++||||...+.  
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--   88 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--   88 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS--
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH--
Confidence            345679999999999999999999876543321110      112222221111   01 012368899999987642  


Q ss_pred             chHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEEcCCCCCCCh-hhHHHH
Q 046239           86 SEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG----KKIFDYMIVVFTGGDYLEDNE-KTLEDY  160 (170)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ivv~tk~D~~~~~~-~~~~~~  160 (170)
                               .....+..++|++++|+|++++....+...++.+.+++.    .....|+++|.||+|+..... +.++++
T Consensus        89 ---------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~  159 (198)
T 3t1o_A           89 ---------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAV  159 (198)
T ss_dssp             ---------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHH
T ss_pred             ---------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHH
Confidence                     223345678899999999985544444444444444332    113359999999999876521 344444


Q ss_pred             hh
Q 046239          161 LG  162 (170)
Q Consensus       161 ~~  162 (170)
                      .+
T Consensus       160 ~~  161 (198)
T 3t1o_A          160 VD  161 (198)
T ss_dssp             HC
T ss_pred             HH
Confidence            43

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.69  E-value=2e-15  Score=102.76  Aligned_cols=126  Identities=16%  Similarity=0.113  Sum_probs=78.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      .+..+|+++|++|+|||||++++++...... ....+    .......+ .+..+.++||||...+...           
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------   78 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG----FNVETLSY-KNLKLNVWDLGGQTSIRPY-----------   78 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTT----CCEEEEEE-TTEEEEEEEEC----CCTT-----------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCcc-CCcCc----cceEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence            5678999999999999999999997654222 11222    12233444 5688999999999764321           


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCCh-hhHHHHh
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDNE-KTLEDYL  161 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~~-~~~~~~~  161 (170)
                      .......+|++++|+|+++..+...  ...++......  ....|+++|+||+|+..... ..+.+++
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~  144 (183)
T 1moz_A           79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL  144 (183)
T ss_dssp             GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHh
Confidence            2245678899999999975543332  22334443321  12359999999999876521 3344444

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.69  E-value=1.2e-15  Score=104.15  Aligned_cols=117  Identities=18%  Similarity=0.135  Sum_probs=77.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+|+++|++|+|||||++.+++......     ..|.......+.+ .+..+.++||||...+           ...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~   76 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY   76 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence            4568999999999999999999998643211     1111122233444 5778999999998642           233


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      +..+...+|++++|+|++++-+...  ...++.+.+..  ....|+++|.||+|+...
T Consensus        77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  132 (181)
T 1fzq_A           77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA  132 (181)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence            3445678899999999975433332  22333333321  123599999999998765

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=2.1e-16  Score=109.88  Aligned_cols=120  Identities=15%  Similarity=0.106  Sum_probs=77.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|++|+|||||++.+++.........+  .+.......+.+ .+  ..+.++||||...           +.
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~   89 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT--IGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FR   89 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC--CSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCc--cceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence            34579999999999999999999876543221111  122222233333 33  3688999999753           23


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+...+|++++|+|+++..+... ..++..+.......  .|+++|.||+|+...
T Consensus        90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~  146 (201)
T 2ew1_A           90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAER  146 (201)
T ss_dssp             HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred             HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence            345567789999999999974322221 33444444433222  489999999998743

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.68  E-value=2.2e-16  Score=109.12  Aligned_cols=114  Identities=20%  Similarity=0.187  Sum_probs=71.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC----------------------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG----------------------------   68 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------   68 (170)
                      ....+|+++|++|+|||||+|+|++...........+.  ......+.+ .+                            
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA--SFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSC--EEEEEEEET-TC----------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccc--eeEEEEEEe-cCcccccccccccccccccccccccccccc
Confidence            45689999999999999999999987543221111111  111111222 11                            


Q ss_pred             -----------ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccc
Q 046239           69 -----------QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKI  136 (170)
Q Consensus        69 -----------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~  136 (170)
                                 ..+.++||||...+..           ........+|++++|+|++++.+..+ ..++..+....    
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----  146 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----  146 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----
T ss_pred             ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----
Confidence                       5789999999765421           12234567899999999974432222 22333333322    


Q ss_pred             cceEEEEEEcCC
Q 046239          137 FDYMIVVFTGGD  148 (170)
Q Consensus       137 ~~~~ivv~tk~D  148 (170)
                      ..|+++|+||+|
T Consensus       147 ~~piilv~NK~D  158 (208)
T 3clv_A          147 NYIIILVANKID  158 (208)
T ss_dssp             CCEEEEEEECTT
T ss_pred             CCcEEEEEECCC
Confidence            159999999999

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.68  E-value=4e-16  Score=108.83  Aligned_cols=121  Identities=15%  Similarity=0.151  Sum_probs=74.4

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGK   91 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~   91 (170)
                      .......+|+++|++|+|||||++++++..........  .+.......+.+ .+  ..+.+|||||...+...      
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~------   85 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITT--IGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI------   85 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCC--CSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCc--ccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH------
Confidence            34456689999999999999999999976542221222  222222333333 34  46899999998653221      


Q ss_pred             HHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                           ...+...+|++++|+|+.+..+... ..++..+.......  .|+++|+||+|+.
T Consensus        86 -----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~  138 (213)
T 3cph_A           86 -----TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME  138 (213)
T ss_dssp             -----CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCS
T ss_pred             -----HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence                 1234567899999999974322222 34444444443222  5999999999984

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.68  E-value=7.4e-16  Score=105.65  Aligned_cols=123  Identities=15%  Similarity=0.058  Sum_probs=76.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC----------CceEEEEeCCCCCCCCCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD----------GQVVNVIDTPGLFDSSAGS   86 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------~~~~~l~DtpG~~~~~~~~   86 (170)
                      ....+|+++|++|+|||||+|++++...........+.+.. .........          ...+.++||||+..     
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----   82 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR-EKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-----   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-----
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee-eEEEEEecCCcccccccCcEEEEEEEeCCCcHH-----
Confidence            44579999999999999999999976543222222222111 022222211          24789999999864     


Q ss_pred             hHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           87 EFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                            +..........+|++++|+|+.+..+..+ ..++..+..... ....|+++|+||+|+...
T Consensus        83 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  142 (195)
T 3bc1_A           83 ------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQ  142 (195)
T ss_dssp             ------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGG
T ss_pred             ------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence                  23334556788999999999974433222 334444444322 022599999999998753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.68  E-value=7.3e-16  Score=104.88  Aligned_cols=119  Identities=19%  Similarity=0.193  Sum_probs=73.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+|+++|.+|+|||||++.+++...........+.+.   ...... .+  ..+.++||||...+.....        
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~--------   72 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF---TKLITV-NGQEYHLQLVDTAGQDEYSIFPQ--------   72 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEE-TTEEEEEEEEECCCCCTTCCCCG--------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEE-CCEEEEEEEEeCCCchhhhHHHH--------
Confidence            457999999999999999999996543222122212111   222223 33  4568999999987532222        


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         .+...+|++++|+++.+..+... ..++..+.+.... ...|+++|.||+|+...
T Consensus        73 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  126 (181)
T 3t5g_A           73 ---TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHME  126 (181)
T ss_dssp             ---GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTT
T ss_pred             ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhc
Confidence               35678899999999974322222 2233333333221 13599999999998654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.68  E-value=1.6e-16  Score=107.94  Aligned_cols=123  Identities=15%  Similarity=0.070  Sum_probs=70.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|++|+|||||++.+++..........  .+.......+.+.  ....+.++||||...+           .
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~   72 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKAT--IGADFLTKEVTVDGDKVATMQVWDTAGQERF-----------Q   72 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCc--cceEEEEEEEEEcCCcEEEEEEEECCCChHh-----------h
Confidence            45679999999999999999999976542221111  1111222223221  1347899999997642           2


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      .........+|++++|+|+.+..+... ..++..+......  ....|+++|+||+|+...
T Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  133 (182)
T 1ky3_A           73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  133 (182)
T ss_dssp             ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence            334456788999999999974432222 2334444443320  123599999999998643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.68  E-value=6.7e-17  Score=109.57  Aligned_cols=119  Identities=18%  Similarity=0.127  Sum_probs=73.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      +..+|+++|++|+|||||+|++++.........  ..+.........+ .+  ..+.++||||...+.           .
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~   78 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR-----------S   78 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCC--CCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------G
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------H
Confidence            447999999999999999999997654322111  2222222333333 33  378899999976431           1


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+|+++..+... ..++..+.......  .|+++|+||+|+.+.
T Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~  134 (179)
T 2y8e_A           79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDK  134 (179)
T ss_dssp             GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGG
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc
Confidence            11123456799999999974322221 23344444433222  589999999998754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.68  E-value=1.1e-16  Score=112.17  Aligned_cols=122  Identities=19%  Similarity=0.200  Sum_probs=75.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      .....+|+++|.+|+|||||+|+|++...........+.+....  ......+  ..+.++||||...+.....      
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------   79 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV--TFLDDQGNVIKFNVWDTAGQEKKAVLKD------   79 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE--EEEBTTSCEEEEEEEEECSGGGTSCCCH------
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEE--EEEeCCCcEEEEEEEecCCchhhchHHH------
Confidence            34567999999999999999999997654322222222222211  1111112  4689999999875432221      


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                           .....+|++++|+|++++.+..+ ..++..+.......  .|+++|+||+|+...
T Consensus        80 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~  132 (218)
T 4djt_A           80 -----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR  132 (218)
T ss_dssp             -----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC--
T ss_pred             -----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence                 23467899999999985433332 34445555544333  499999999998754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.67  E-value=8.6e-16  Score=105.87  Aligned_cols=118  Identities=13%  Similarity=0.097  Sum_probs=73.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ..+..+|+++|++|+|||||++.+++......     ..|.......+.+ .+..+.++||||...+..           
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------   88 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRP-----------   88 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CT-----------
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------
Confidence            34568999999999999999999987654321     1222223334444 678899999999975421           


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+|++++.+...  ...++.+....  ....|+++|.||+|+...
T Consensus        89 ~~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~  145 (192)
T 2b6h_A           89 LWRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNA  145 (192)
T ss_dssp             THHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence            12223457799999999975433222  22334443321  123599999999998765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.67  E-value=9.8e-16  Score=106.23  Aligned_cols=121  Identities=20%  Similarity=0.152  Sum_probs=74.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      ..+..+|+++|++|+|||||+|.+++...........+.   .....+.+ .+  ..+.+|||||...+.          
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------   76 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVL-DGEEVQIDILDTAGQEDYA----------   76 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCE---EEEEEEEE-TTEEEEEEEEECCCTTCCH----------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce---EEEEEEEE-CCEEEEEEEEcCCChhhhH----------
Confidence            345679999999999999999999976532221111111   11222333 33  368899999987631          


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       .....+...+|++++|+++++..+... ..++..+...... ...|+++|+||+|+...
T Consensus        77 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  134 (206)
T 2bov_A           77 -AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK  134 (206)
T ss_dssp             -HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGG
T ss_pred             -HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCcccc
Confidence             112223445799999999974322222 2334444443321 13599999999998764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.67  E-value=4.8e-16  Score=104.22  Aligned_cols=119  Identities=21%  Similarity=0.065  Sum_probs=61.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|++|+|||||+|++++...... ....+.+. ........ ....+.++||||...+           .....
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~~~~   67 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDG-EEASLMVYDIWEQDGG-----------RWLPG   67 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETT-EEEEEEEEECC---------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECC-EEEEEEEEECCCCccc-----------hhhhh
Confidence            46899999999999999999998664322 11222222 11111111 2346789999998753           22223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+...+|++++|++++++.+... ..++..+.+... ....|+++|.||+|+...
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~  121 (166)
T 3q72_A           68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS  121 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred             hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccc
Confidence            35577899999999974322222 223333333211 123599999999998755

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.67  E-value=9.8e-16  Score=105.05  Aligned_cols=117  Identities=16%  Similarity=0.125  Sum_probs=78.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      .+..+|+++|++|+|||||+|++++...... ..+.+    .......+ ....+.++||||+..+...           
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~----~~~~~~~~-~~~~~~~~Dt~G~~~~~~~-----------   82 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG----VNLETLQY-KNISFEVWDLGGQTGVRPY-----------   82 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEE-CSSTT----CCEEEEEE-TTEEEEEEEECCSSSSCCC-----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCc-CCCCc----eEEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence            4678999999999999999999987654322 11111    22233444 5778999999999764322           


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      .......+|++++|+|++++-+...  ...++.+.+..  ....|+++|+||+|+...
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence            1235678899999999985543332  22333333322  123599999999998765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.67  E-value=2.3e-16  Score=109.55  Aligned_cols=120  Identities=14%  Similarity=0.085  Sum_probs=73.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|.+|+|||||++.+++.........+  .+.......+.+ .+  ..+.+|||||...+           .
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~   92 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGST--IGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------R   92 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------H
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCC--cceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------H
Confidence            44578999999999999999999876532211111  111122233333 33  47899999998642           2


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+...+|++++|+|+++..+... ..+++.+......  ..|+++|.||+|+...
T Consensus        93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~  149 (201)
T 2hup_A           93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSEL  149 (201)
T ss_dssp             HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred             HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccc
Confidence            233445678899999999974322221 2344444443222  2599999999998753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.67  E-value=1.7e-16  Score=106.74  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=72.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+|+++|++|+|||||+|++++.........  ..+.........+ .+  ..+.++||||...+...           
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~-----------   68 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFIT--TIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI-----------   68 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCC--ccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-----------
Confidence            46899999999999999999997654222111  1122222333333 22  36889999998654322           


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .......+|++++|+|+.+..+... ..++..+......  ..|+++|+||+|+..
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~  122 (170)
T 1g16_A           69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMET  122 (170)
T ss_dssp             CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCc
Confidence            1123467899999999974332222 3344444443322  259999999999843

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=2.6e-16  Score=108.59  Aligned_cols=124  Identities=19%  Similarity=0.111  Sum_probs=75.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .....+|+++|.+|+|||||+|+|++...........+.+.. ....... ....+.++||||...+.           .
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~   71 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDK-SVCTLQITDTTGSHQFP-----------A   71 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETT-EEEEEEEEECCGGGSCH-----------H
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECC-EEEEEEEEeCCChHHhH-----------H
Confidence            345689999999999999999999976543222222222211 1111110 12368899999987531           1


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+++++..+... ..++..+.+........|+++|+||+|+...
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~  129 (199)
T 2gf0_A           72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR  129 (199)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred             HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence            12223345699999999974322222 2345555554432223599999999998753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.67  E-value=5.8e-16  Score=104.95  Aligned_cols=123  Identities=17%  Similarity=0.128  Sum_probs=74.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC---ceEEEEeCCCCCCCCCCchHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG---QVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      ..+..+|+++|++|+|||||++.+++.........+.+..  .....+.+ .+   ..+.++||||...+...       
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~-------   72 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLD--FFLRRITL-PGNLNVTLQIWDIGGQTIGGKM-------   72 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSS--EEEEEEEE-TTTEEEEEEEEECTTCCTTCTT-------
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEE--EEEEEEEe-CCCCEEEEEEEECCCCccccch-------
Confidence            3456899999999999999999999765322111111111  12223333 33   57899999998764321       


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~  152 (170)
                          ...+...+|++++|+|+++..+..+ ..++..+..........| +++|.||+|+...
T Consensus        73 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~  130 (178)
T 2hxs_A           73 ----LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM  130 (178)
T ss_dssp             ----HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred             ----hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence                1234567899999999974433222 233444444321111134 8999999998753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.67  E-value=7.3e-16  Score=106.18  Aligned_cols=120  Identities=14%  Similarity=0.093  Sum_probs=75.2

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGK   91 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~   91 (170)
                      .......+|+++|.+|+|||||++.+++.........+.+.+..   ..... .+  ..+.++||||...+.        
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~~~i~Dt~G~~~~~--------   85 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS---HVMKY-KNEEFILHLWDTAGQEEYD--------   85 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE---EEEEE-TTEEEEEEEEEECCSGGGT--------
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE---EEEEE-CCEEEEEEEEECCCcHHHH--------
Confidence            34455689999999999999999999986642221222111111   12222 33  346899999976532        


Q ss_pred             HHHHHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                         .....+...+|++++|+|+++..+..+  ..++..+.....   ..|+++|.||+|+..
T Consensus        86 ---~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  141 (194)
T 3reg_A           86 ---RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK  141 (194)
T ss_dssp             ---TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred             ---HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence               223346778999999999985433323  234444444322   249999999999875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.67  E-value=6.8e-17  Score=112.06  Aligned_cols=121  Identities=17%  Similarity=0.128  Sum_probs=71.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      .....+|+++|++|+|||||+|.+++..........  .+.......... .+  ..+.++||||...+           
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------   87 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHT--IGVEFGSRVVNV-GGKTVKLQIWDTAGQERF-----------   87 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHH-----------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCc--ccceeEEEEEEE-CCeeeEEEEEcCCCcHhH-----------
Confidence            345579999999999999999999986543221111  111122223333 33  57899999997532           


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+...+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+...
T Consensus        88 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~  145 (200)
T 2o52_A           88 RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPE  145 (200)
T ss_dssp             SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGG
T ss_pred             HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence            1112234567899999999974332222 2334444443322  2589999999998643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.67  E-value=8.5e-16  Score=102.89  Aligned_cols=119  Identities=19%  Similarity=0.141  Sum_probs=71.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      +..+|+++|++|+|||||+|++++...........+..   ......+ .+  ..+.++||||..++           ..
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~   67 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS---YRKKVVL-DGEEVQIDILDTAGQEDY-----------AA   67 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE---EEEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceE---EEEEEEE-CCEEEEEEEEECCCcchh-----------HH
Confidence            45789999999999999999999765422211111111   1122223 33  36889999998753           11


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+...+|++++|+++++..+... ..++..+.+.... ...|+++|+||+|+...
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  124 (168)
T 1u8z_A           68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK  124 (168)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGG
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECcccccc
Confidence            22233456799999999974322222 2334444444321 12599999999998754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.67  E-value=4.6e-16  Score=104.09  Aligned_cols=118  Identities=20%  Similarity=0.157  Sum_probs=71.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+|+++|++|+|||||+|++++............ +  ........ .+  ..+.++||||...+.           ..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~--~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----------~~   67 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-D--FYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM   67 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-E--EEEEEEEE-TTEEEEEEEEECCCTTCCH-----------HH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-e--eEEEEEEE-CCEEEEEEEEECCCchhhH-----------HH
Confidence            47899999999999999999997654322111111 1  11222333 33  348899999987531           11


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......+|++++|+++.+..+... ..++..+.+.... ...|+++|+||+|+...
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  123 (167)
T 1kao_A           68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESE  123 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGG
T ss_pred             HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccccc
Confidence            2223345699999999974322222 2333444443321 23599999999998654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.67  E-value=1.9e-15  Score=101.66  Aligned_cols=120  Identities=18%  Similarity=0.241  Sum_probs=71.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|++|+|||||+|.+++.......  .++.+.......+.+ .+..+.++||||+..+.....  ...+.....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~~   77 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDYI   77 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSH--HHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcch--hHHHHHHHH
Confidence            468999999999999999999986532221  122233333333444 567899999999987543221  111111111


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                       ....++++++|+|+.+ .. ....++..+.+   .  ..|+++|.||+|+..
T Consensus        78 -~~~~~~~~i~v~D~~~-~~-~~~~~~~~~~~---~--~~p~ilv~nK~Dl~~  122 (165)
T 2wji_A           78 -INEKPDLVVNIVDATA-LE-RNLYLTLQLME---M--GANLLLALNKMDLAK  122 (165)
T ss_dssp             -HHHCCSEEEEEEETTC-HH-HHHHHHHHHHH---T--TCCEEEEEECHHHHH
T ss_pred             -hcCCCCEEEEEecCCc-hh-HhHHHHHHHHh---c--CCCEEEEEEchHhcc
Confidence             1136799999999873 21 12223333332   1  259999999999753

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.67  E-value=5.9e-16  Score=114.21  Aligned_cols=126  Identities=17%  Similarity=0.154  Sum_probs=81.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|.+|+|||||+|.+++....... ...+.|.........+..+..+.+|||||...+      ..........
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~   75 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKD   75 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHH
Confidence            468999999999999999999886432221 123344444444444434678999999998642      1111123334


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ....++|++++|+|+++..+..+. .+.+++.+........|+++|.||+|+..
T Consensus        76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            456789999999999855444443 33444444332122259999999999887

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.66  E-value=3.2e-16  Score=109.87  Aligned_cols=122  Identities=14%  Similarity=0.071  Sum_probs=75.8

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      .......+|+++|.+|+|||||++.+++.........+.+...   ....... ....+.+|||||...+.         
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~---------   89 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY---TACLETEEQRVELSLWDTSGSPYYD---------   89 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEEC--CEEEEEEEEECCSGGGT---------
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE---EEEEEECCEEEEEEEEECCCCHhHH---------
Confidence            4445668999999999999999999997654322122221111   1112221 23468899999987532         


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        .....++..+|++++|+|+++..+...  ..++..+.....   ..|+++|.||+|+..+
T Consensus        90 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~  146 (214)
T 3q3j_B           90 --NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRTD  146 (214)
T ss_dssp             --TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGGC
T ss_pred             --HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence              223346788999999999985433333  344455555422   2599999999998753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.66  E-value=1.2e-16  Score=123.59  Aligned_cols=123  Identities=23%  Similarity=0.242  Sum_probs=75.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+.+|+++|++|+|||||+|+|++........ ..+.|.........+ .+..+.++||||+.++....+   .......
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve---~~gi~~~  297 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVE---KIGVERS  297 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEEE-TTEEEEECC----------------------
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHH---HHHHHHH
Confidence            45679999999999999999999865322211 223343333334445 678899999999976421111   1112223


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+|++++.+..+..+++.+..       .|+++|+||+|+...
T Consensus       298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~  345 (462)
T 3geh_A          298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK  345 (462)
T ss_dssp             -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG
T ss_pred             hhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc
Confidence            346678999999999988888777666555433       499999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.66  E-value=1.8e-15  Score=109.68  Aligned_cols=120  Identities=20%  Similarity=0.240  Sum_probs=78.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|++|+|||||+|+|+|...... . .++.|.........+ .+..+.++||||+.++......   +......
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~-~-~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~---~~~~~~~   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVG-N-WPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID---ELIARNF   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEE-E-CTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH---HHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccC-C-CCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH---HHHHHHh
Confidence            46899999999999999999999865322 2 233444455555555 6778999999999976543321   1111111


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      ....++|++++|+|++..  .....++..+.+.   . ..|+++|+||+|+.
T Consensus        77 ~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~---~-~~p~ilv~NK~Dl~  122 (271)
T 3k53_A           77 ILDGNADVIVDIVDSTCL--MRNLFLTLELFEM---E-VKNIILVLNKFDLL  122 (271)
T ss_dssp             HHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT---T-CCSEEEEEECHHHH
T ss_pred             hhccCCcEEEEEecCCcc--hhhHHHHHHHHhc---C-CCCEEEEEEChhcC
Confidence            123688999999999732  1222233333322   1 15999999999964

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.66  E-value=5.6e-16  Score=107.61  Aligned_cols=122  Identities=15%  Similarity=0.076  Sum_probs=75.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      .....+|+++|++|+|||||+|+|++..........  .+.........+ .+  ..+.++||||...+...        
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~--------   73 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT--IGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSL--------   73 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCC--CSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCS--------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc--ccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHh--------
Confidence            345679999999999999999999986643221211  222222333333 22  46899999998653221        


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEEcCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK--KIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (170)
                         ...+...+|++++|+|++++.+... ..++..+......  ....|+++|+||+|+..
T Consensus        74 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  131 (207)
T 1vg8_A           74 ---GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN  131 (207)
T ss_dssp             ---CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             ---HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence               1235678899999999974432222 2334444443321  12359999999999874

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.66  E-value=3.9e-16  Score=109.36  Aligned_cols=119  Identities=14%  Similarity=0.043  Sum_probs=74.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEE--eeEEEEeeC-----------CceEEEEeCCCCCCCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITC--EMKTTVLKD-----------GQVVNVIDTPGLFDSS   83 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~-----------~~~~~l~DtpG~~~~~   83 (170)
                      ....+|+++|.+|+|||||+|+|++......    ...|...  ....+.+..           ...+.+|||||..   
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---   95 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE---   95 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH---
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH---
Confidence            3457899999999999999999998654211    1122211  112222211           3568999999964   


Q ss_pred             CCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239           84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                              ++......+...+|++++|+|+++..+.  .....++..+....  ...|+++|+||+|+...
T Consensus        96 --------~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~  156 (217)
T 2f7s_A           96 --------RFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ  156 (217)
T ss_dssp             --------HHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred             --------hHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence                    2334445566788999999999743222  12223444433211  23599999999998753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.66  E-value=8.6e-16  Score=106.41  Aligned_cols=127  Identities=14%  Similarity=0.135  Sum_probs=76.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      .+..+|+++|++|+|||||++++++...... .    .|.......+.+ .+..+.++||||...+..           .
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~   85 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-V----PTLHPTSEELTI-AGMTFTTFDLGGHIQARR-----------V   85 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CC-----------G
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc-C----CCCCceeEEEEE-CCEEEEEEECCCcHhhHH-----------H
Confidence            4567899999999999999999998654221 1    111112234444 567899999999875432           2


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHhh
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYLG  162 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~~  162 (170)
                      ...+...+|++++|+|+.++-+...  ...++.+.+..  ....|+++|.||+|+.... .+.+.+++.
T Consensus        86 ~~~~~~~~d~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  152 (198)
T 1f6b_A           86 WKNYLPAINGIVFLVDCADHERLLE--SKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFG  152 (198)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhC
Confidence            2335567899999999975433332  22333333321  1235999999999987532 244555544

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.66  E-value=2.7e-15  Score=108.10  Aligned_cols=121  Identities=23%  Similarity=0.263  Sum_probs=78.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      +..+|+++|.+|+|||||+|+|+|.......  .++.|.......+.+ .+..+.++||||+.++.....  ...+....
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~   78 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDY   78 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHH
Confidence            3478999999999999999999997654221  234555555555555 577899999999987654321  11111111


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      . ....+|++++|+|+++ +. ....++..+.+   ..  .|+++|+||+|+..
T Consensus        79 ~-~~~~~d~ii~V~D~t~-~~-~~~~~~~~l~~---~~--~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           79 L-LKGDADLVILVADSVN-PE-QSLYLLLEILE---ME--KKVILAMTAIDEAK  124 (258)
T ss_dssp             H-HHSCCSEEEEEEETTS-CH-HHHHHHHHHHT---TT--CCEEEEEECHHHHH
T ss_pred             H-hhcCCCEEEEEeCCCc-hh-hHHHHHHHHHh---cC--CCEEEEEECcCCCC
Confidence            1 1257899999999973 22 22223333332   22  59999999999754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.66  E-value=3.8e-15  Score=102.51  Aligned_cols=117  Identities=19%  Similarity=0.068  Sum_probs=75.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+|+++|.+|+|||||++.+++...........+..   ......+ .+  ..+.+|||||...+..           
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~i~D~~G~~~~~~-----------   81 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH---YAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------   81 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC---EEEEEES-SSCEEEEEEECCCCSSSSTT-----------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccce---eEEEEEE-CCEEEEEEEEECCCCcchhH-----------
Confidence            45799999999999999999999764322111111111   1122333 33  4678999999986532           


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+...+|++++|+|++++.+...  ..++..+.+...   ..|+++|.||+|+...
T Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC
T ss_pred             HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence            22345778999999999974422222  134455555322   2599999999998764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.66  E-value=1.3e-15  Score=103.82  Aligned_cols=120  Identities=19%  Similarity=0.147  Sum_probs=73.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      .+..+|+++|++|+|||||+|+|++.............   .......+ .+  ..+.++||||...+.           
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------   80 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVL-DGEEVQIDILDTAGQEDYA-----------   80 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCE---EEEEEEEE-TTEEEEEEEEECCCTTCCH-----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccce---EEEEEEEE-CCEEEEEEEEECCCCcccH-----------
Confidence            45589999999999999999999976542221111111   11122233 33  368899999987531           


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+...+|++++|+++.+..+... ..++..+...... ...|+++|+||+|+...
T Consensus        81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  138 (187)
T 2a9k_A           81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK  138 (187)
T ss_dssp             HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGG
T ss_pred             HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence            112223445799999999974322222 2334444444321 12599999999998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.66  E-value=4.3e-16  Score=106.20  Aligned_cols=119  Identities=16%  Similarity=0.121  Sum_probs=55.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+|+++|++|+|||||++.+++.......  .+..+.......+.+ .+  ..+.++||||...+           ..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~   72 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-----------RT   72 (183)
T ss_dssp             EEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEcCCCChhh-----------hh
Confidence            4578999999999999999999975432111  111222222233333 33  57889999998653           22


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+...+|++++|+|++++.+... ..++..+......  ..|+++|.||+|+...
T Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~  128 (183)
T 2fu5_C           73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDK  128 (183)
T ss_dssp             -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSC
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCcc
Confidence            23346778999999999974322222 2333444433222  2599999999998754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.66  E-value=7e-16  Score=108.67  Aligned_cols=120  Identities=18%  Similarity=0.112  Sum_probs=73.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|++|+|||||++.|++..........  .+.......+.+ .+  ..+.+|||||...+...         
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------   78 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKST--IGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAI---------   78 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCC---------
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc--ccceeEEEEEEE-CCEEEEEEEEECCCccchhhh---------
Confidence            44579999999999999999999986543221111  111122223333 33  47899999998764322         


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        ...+...+|++++|+|+++..+..+ ..++..+.......  .|+++|+||+|+...
T Consensus        79 --~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~  133 (223)
T 3cpj_B           79 --TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHL  133 (223)
T ss_dssp             --CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGG
T ss_pred             --HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc
Confidence              2245678899999999974433222 23344444432222  489999999998753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.66  E-value=5.6e-16  Score=119.49  Aligned_cols=128  Identities=20%  Similarity=0.189  Sum_probs=77.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH--HHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE--IVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~--~~~   95 (170)
                      ...+++++|++|+|||||+|+|+|...... ...++.|.......+.+ .+..+.++||||+.............  ...
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v-~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCccccc-CCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            457999999999999999999999764322 12234444444445555 67789999999985432111000000  000


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      . ......+|++++++|+.++.+..+..+...+...     ..++++|+||+|+.+..
T Consensus       257 ~-~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~~~  308 (439)
T 1mky_A          257 V-VDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVHR  308 (439)
T ss_dssp             H-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTTG
T ss_pred             H-HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCCch
Confidence            0 1122346999999999877777776555544432     25999999999988653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.66  E-value=5.1e-16  Score=118.78  Aligned_cols=127  Identities=21%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      +.....+|+++|.+|+|||||+|+|++...... ....+.|.........+.....+.+|||||+.++............
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence            345568999999999999999999998764322 2233445555555565533348999999999986543332222222


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                          ....++|++++|+|+  .....+..++.++.+.     ..|+++|+||+|+....
T Consensus       109 ----~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~  156 (423)
T 3qq5_A          109 ----RVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEK  156 (423)
T ss_dssp             ----HHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCC
T ss_pred             ----HHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCcc
Confidence                345678999999998  5666777777777765     25999999999998774

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=1.7e-16  Score=109.12  Aligned_cols=120  Identities=18%  Similarity=0.132  Sum_probs=73.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +..+|+++|++|+|||||+++|++...........+.+.  ......+. ....+.++||||...+...           
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------   80 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF--KVKTISVDGNKAKLAIWDTAGQERFRTL-----------   80 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEE--EEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence            457999999999999999999998654322222222222  22222221 2356889999998753211           


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ...+...+|++++|+|+.+..+... ..++..+..... ....|+++|+||+|+..
T Consensus        81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~  135 (195)
T 1x3s_A           81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKEN  135 (195)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSS
T ss_pred             hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcc
Confidence            2234567899999999974322222 222333333211 12358999999999854

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.65  E-value=3e-15  Score=104.79  Aligned_cols=118  Identities=19%  Similarity=0.109  Sum_probs=63.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      .+..+|+++|.+|+|||||++++++........... ..  ........ .+  ..+.+|||||...+           .
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~-~~--~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~   96 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FE--RYMVNLQV-KGKPVHLHIWDTAGQDDY-----------D   96 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCC-CE--EEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc-ce--eEEEEEEE-CCEEEEEEEEECCCchhh-----------h
Confidence            345799999999999999999999865422211111 11  11122222 33  36889999998753           2


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+...+|++++|+|+++..+....  .++..+.+...   ..|+++|.||+|+...
T Consensus        97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  153 (214)
T 2j1l_A           97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRKD  153 (214)
T ss_dssp             --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGSC
T ss_pred             HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhcc
Confidence            2233456788999999999743222221  24444444321   2499999999998765

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.65  E-value=8.9e-16  Score=113.40  Aligned_cols=140  Identities=14%  Similarity=0.158  Sum_probs=80.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccC--CC-Cc---eeEEE--------------------------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASA--GS-SG---VTITC--------------------------------   58 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~--~~-~~---~t~~~--------------------------------   58 (170)
                      ...++|+++|.+|+|||||+|+|+|......+.  .+ .+   .+...                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            455789999999999999999999976422211  11 11   01110                                


Q ss_pred             ------e-------------eEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhccCCccEEEEEEeC-CCC
Q 046239           59 ------E-------------MKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKCIGLAKGGIHAVLVVFSA-RNR  116 (170)
Q Consensus        59 ------~-------------~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~-~~~  116 (170)
                            .             ...+..+....+.++||||+.....  ........+...+..+...+|++++|+++ +..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                  0             0001122346799999999975221  11122334555555566788999999987 444


Q ss_pred             CCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239          117 FSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG  162 (170)
Q Consensus       117 ~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~  162 (170)
                      +...+ ..+++.+...     ..|+++|+||+|+..... ...++++
T Consensus       182 ~~~~~~~~i~~~~~~~-----~~~~i~v~NK~Dl~~~~~-~~~~~~~  222 (315)
T 1jwy_B          182 LANSDALQLAKEVDPE-----GKRTIGVITKLDLMDKGT-DAMEVLT  222 (315)
T ss_dssp             STTCSHHHHHHHHCSS-----CSSEEEEEECTTSSCSSC-CCHHHHT
T ss_pred             hhhhHHHHHHHHhCCC-----CCcEEEEEcCcccCCcch-HHHHHHh
Confidence            44333 2444444321     259999999999986642 2344444

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=9.7e-17  Score=110.38  Aligned_cols=121  Identities=15%  Similarity=0.092  Sum_probs=74.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ....+|+++|.+|+|||||+|.+++...........+.+.  ....... .....+.++||||...           +..
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~   87 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF--KVKTVYRHEKRVKLQIWDTAGQER-----------YRT   87 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTE--EEEEEEETTTTEEEEEECHHHHHH-----------CHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEE--EEEEEEECCEEEEEEEEeCCChHH-----------HHH
Confidence            4457899999999999999999997543211111111111  1122222 1345789999999643           233


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+...+|++++|+|+++..+... ..+++.+......  ..|+++|.||+|+...
T Consensus        88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~  143 (191)
T 3dz8_A           88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEE  143 (191)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred             HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc
Confidence            34456678899999999974322221 3344444443222  2599999999998654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.65  E-value=3.9e-16  Score=104.59  Aligned_cols=119  Identities=18%  Similarity=0.140  Sum_probs=71.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..+|+++|.+|+|||||+|++++...........+   .......... ....+.++||||...+..    .       .
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~-------~   68 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDCQQCMLEILDTAGTEQFTA----M-------R   68 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSE---EEEEEEEESSSCEEEEEEEEECSSCSSTT----H-------H
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc---ceEEEEEEECCEEEEEEEEECCChHHHHH----H-------H
Confidence            46899999999999999999997654222111111   1111222221 124688999999876421    1       1


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...+|++++|+++++..+... ..+++.+.+.... ...|+++|+||+|+.+.
T Consensus        69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  123 (167)
T 1c1y_A           69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE  123 (167)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccccc
Confidence            122335699999999974322222 2344444443321 23599999999998754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=1.9e-15  Score=105.18  Aligned_cols=117  Identities=19%  Similarity=0.115  Sum_probs=73.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+|+++|.+|+|||||+|++++...........+..   ....... .+  ..+.++||||...+..           
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------   88 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFEN---YVADIEV-DGKQVELALWDTAGQEDYDR-----------   88 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCE---EEEEEEE-TTEEEEEEEEECTTCTTCTT-----------
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccce---EEEEEEE-CCEEEEEEEEECCCcHHHHH-----------
Confidence            35689999999999999999999865432211111111   1112233 33  4688999999876432           


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+|+++..+...  ..++..+.+...   ..|+++|+||+|+...
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A           89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSD  144 (207)
T ss_dssp             TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGC
T ss_pred             HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhcc
Confidence            12245678899999999974322222  334455544321   2599999999998765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.65  E-value=4.8e-16  Score=106.27  Aligned_cols=119  Identities=22%  Similarity=0.198  Sum_probs=70.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      +..+|+++|++|+|||||+|+|++..........   +.......... .+.  .+.++||||...+....         
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~---------   69 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPT---IEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMR---------   69 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTT---CCEEEEEEEEE-TTEEEEEEEEECCCC---CTTH---------
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCC---chheEEEEEEE-CCcEEEEEEEECCCcHHHHHHH---------
Confidence            4578999999999999999999976542221111   11122222223 333  46789999987643211         


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        ..+...+|++++|+++++..+... ..++..+..... ....|+++|+||+|+...
T Consensus        70 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~  124 (189)
T 4dsu_A           70 --DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR  124 (189)
T ss_dssp             --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC
T ss_pred             --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc
Confidence              122344699999999974322222 233444444322 123599999999998754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.65  E-value=1.4e-15  Score=114.56  Aligned_cols=133  Identities=17%  Similarity=0.185  Sum_probs=80.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccC--CCCcee-EEE------------------------------------
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA--GSSGVT-ITC------------------------------------   58 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~--~~~~~t-~~~------------------------------------   58 (170)
                      .-+.|+|+|.+|||||||+|+|+|......+.  .+...+ ...                                    
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            34599999999999999999999965322211  110000 000                                    


Q ss_pred             -------------eeEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHH
Q 046239           59 -------------EMKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEA  123 (170)
Q Consensus        59 -------------~~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~  123 (170)
                                   ....+..+....+.++||||+..+..  .......++...+..+..++|+++++++.... ......
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-~~~~~~  191 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-DLATSD  191 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-CGGGCH
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-CcCCHH
Confidence                         00111112345789999999987532  12334456666666777889999999876421 222223


Q ss_pred             HHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239          124 AVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       124 ~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .+..+.......  .|+++|+||+|++...
T Consensus       192 ~~~l~~~~~~~~--~~~i~V~nK~Dl~~~~  219 (360)
T 3t34_A          192 AIKISREVDPSG--DRTFGVLTKIDLMDKG  219 (360)
T ss_dssp             HHHHHHHSCTTC--TTEEEEEECGGGCCTT
T ss_pred             HHHHHHHhcccC--CCEEEEEeCCccCCCc
Confidence            344344432222  4899999999998653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.65  E-value=4.2e-15  Score=103.03  Aligned_cols=118  Identities=18%  Similarity=0.108  Sum_probs=74.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|.+|+|||||++.+++...........+....   ....+ .+  ..+.++||||...+.           
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~l~i~Dt~G~~~~~-----------   87 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI---ADIEV-DGKQVELALWDTAGQEDYD-----------   87 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE---EEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE---EEEEE-CCEEEEEEEEECCCchhHH-----------
Confidence            34568999999999999999999976543221111111111   12223 33  368899999986532           


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .........+|++++|+|+++..+...  ..++..+.+...   ..|+++|+||+|+...
T Consensus        88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  144 (201)
T 2gco_A           88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQD  144 (201)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTC
T ss_pred             HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcC
Confidence            122245678899999999974322222  234444444322   2599999999998865

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.65  E-value=1.7e-15  Score=105.38  Aligned_cols=120  Identities=19%  Similarity=0.075  Sum_probs=74.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      ...+..+|+++|.+|+|||||++.+++.........   .+.......... .+.  .+.++||||...+.         
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~---------   92 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP---TVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD---------   92 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC---CSEEEEEEEEEC-C-CEEEEEEEEECCSGGGT---------
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC---eecceeEEEEEE-CCEEEEEEEEECCCchhhH---------
Confidence            345678999999999999999999996543222111   111112222222 333  45599999996532         


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        .....+...+|++++|+|++++.+..+.  .++..+....   ...|+++|.||+|+...
T Consensus        93 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  149 (204)
T 4gzl_A           93 --RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD  149 (204)
T ss_dssp             --TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC
T ss_pred             --HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc
Confidence              2233467789999999999854333332  3444444432   22599999999998765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.65  E-value=1.1e-15  Score=104.22  Aligned_cols=122  Identities=21%  Similarity=0.190  Sum_probs=72.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      ...+..+|+++|++|+|||||+|++++...........+  ... ...... .+.  .+.++||||...+....      
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~--~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------   83 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE--DSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMR------   83 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC--EEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSH------
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--cee-EEEEEe-CCcEEEEEEEECCCchhhHHHH------
Confidence            345567999999999999999999997643222111111  111 222223 343  35569999987542211      


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                           ..+...+|++++|+|++++.+... ..++..+.+.... ...|+++|.||+|+...
T Consensus        84 -----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  138 (183)
T 3kkq_A           84 -----EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHL  138 (183)
T ss_dssp             -----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTT
T ss_pred             -----HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhc
Confidence                 122345699999999974322221 2333444333221 22489999999998753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.64  E-value=3.2e-15  Score=102.47  Aligned_cols=118  Identities=19%  Similarity=0.157  Sum_probs=69.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      +..+|+++|.+|+|||||+|.|++..........   +.........+ .+  ..+.++||||...+           ..
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~   84 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT---IEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SA   84 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTT---CCEEEEEEEEE-TTEEEEEEEEECCC-----------------
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCc---cceEEEEEEEE-CCEEEEEEEEECCChHHH-----------HH
Confidence            4579999999999999999999976532221111   11111122333 33  34889999998642           22


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ....+...+|++++|+++.+..+..+ ..++..+...... ...|+++|+||+|+..
T Consensus        85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred             HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence            33346678899999999974432222 2334444443321 1259999999999875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.64  E-value=4.8e-16  Score=106.87  Aligned_cols=123  Identities=9%  Similarity=0.099  Sum_probs=72.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .....+|+++|++|+|||||+|.|++...... ......+...     .+ ....+.+|||||+..+.....       .
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-~~~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~~-------~  110 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAA-----DY-DGSGVTLVDFPGHVKLRYKLS-------D  110 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH-------H
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-cccCCCceee-----ee-cCCeEEEEECCCCchHHHHHH-------H
Confidence            35668999999999999999999998653221 1111111111     11 456788999999986532211       1


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-----cccceEEEEEEcCCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK-----KIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~ivv~tk~D~~~~~  153 (170)
                      ++......+|++++|+|+... .........++.+.+..     ....|+++|+||+|+....
T Consensus       111 ~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          111 YLKTRAKFVKGLIFMVDSTVD-PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             HHHHHGGGEEEEEEEEETTCC-HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHHhhcccCCEEEEEEECCCC-chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence            122223457999999998711 11112223333333321     1135999999999998763

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.64  E-value=4.9e-16  Score=107.86  Aligned_cols=120  Identities=19%  Similarity=0.111  Sum_probs=55.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC--ccccccCCCCceeE--EEeeEEEEeeC---CceEEEEeCCCCCCCCCCchHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR--KAFKASAGSSGVTI--TCEMKTTVLKD---GQVVNVIDTPGLFDSSAGSEFV   89 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~--~~~~~~~~~~~~t~--~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~   89 (170)
                      ....+|+++|++|+|||||++++++.  .....    ...|.  ......+.+..   ...+.++||||+.         
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------   84 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKD----YAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD---------   84 (208)
T ss_dssp             EEEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTH---------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCC----CCCccceEEEEEEEEECCcccEEEEEEEECCCcH---------
Confidence            34579999999999999999999986  32111    11222  12233344412   3478999999985         


Q ss_pred             HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEEcCCCCC
Q 046239           90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK-KIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~  151 (170)
                        ++......+..++|++++|+|++++.+... ..++..+...... ....|+++|+||+|+..
T Consensus        85 --~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           85 --LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             --HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             --HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence              234455667889999999999974432222 2344444443220 01359999999999876

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.64  E-value=7e-16  Score=103.70  Aligned_cols=119  Identities=21%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|++|+|||||++++++..........  .+.........+ .+  ..+.++||||...+...          ..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~----------~~   69 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME--NSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW----------LQ   69 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccccCC--CcCCeeeEEEEE-CCeEEEEEEEECCCccccchh----------hh
Confidence            57999999999999999999976543222211  122222222333 33  46779999999763210          11


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...+|++++|+|++++-+... ..++..+...... ...|+++|.||+|+.+.
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  124 (169)
T 3q85_A           70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARS  124 (169)
T ss_dssp             CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGG
T ss_pred             hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhc
Confidence            112334699999999974322221 2333333332211 13599999999998743

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.64  E-value=3.8e-15  Score=101.51  Aligned_cols=117  Identities=19%  Similarity=0.063  Sum_probs=74.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      +..+|+++|++|+|||||++++++...........+...   ...... .+  ..+.++||||...+.           .
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~   68 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMV-DGKPVNLGLWDTAGQEDYD-----------R   68 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE---EEEEEE-TTEEEEEEEECCCCSGGGT-----------T
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee---EEEEEE-CCEEEEEEEEECCCCHhHH-----------H
Confidence            457899999999999999999996543222111111111   112222 33  356699999997532           2


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+|++++.+..+.  .++..+.+...   ..|+++|+||+|+...
T Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  124 (186)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC
T ss_pred             HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc
Confidence            223456788999999999744333322  34455554322   3599999999998765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.64  E-value=4.4e-16  Score=109.47  Aligned_cols=123  Identities=16%  Similarity=0.072  Sum_probs=75.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ......+|+++|.+|+|||||+|.++............+.+.......... ....+.++||||...+.....       
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~-------   82 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRD-------   82 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCH-------
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHH-------
Confidence            445568999999999999999999554332212122333343333332221 235688999999865432211       


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                          .+..++|++++|+|+++..+... ..++..+.....   ..|+++|+||+|+...
T Consensus        83 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~  134 (221)
T 3gj0_A           83 ----GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR  134 (221)
T ss_dssp             ----HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC
T ss_pred             ----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc
Confidence                23457899999999985433222 234444444322   2499999999998754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.64  E-value=8e-15  Score=100.25  Aligned_cols=121  Identities=20%  Similarity=0.283  Sum_probs=75.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH-H
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV-K   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~   95 (170)
                      .+..+|+++|++|+|||||+|+|++........  ++.+.......+.+ .+..+.++||||+..+.....  ...+. .
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~   79 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARD   79 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHH
Confidence            355799999999999999999999865432211  23333344444555 678899999999987643211  01111 1


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      +..  ...++++++|+|... +  .  ....++.......  .|+++|.||+|...
T Consensus        80 ~~~--~~~~~~~i~v~d~~~-~--~--~~~~~~~~~~~~~--~piilv~nK~Dl~~  126 (188)
T 2wjg_A           80 YII--NEKPDLVVNIVDATA-L--E--RNLYLTLQLMEMG--ANLLLALNKMDLAK  126 (188)
T ss_dssp             HHH--HHCCSEEEEEEEGGG-H--H--HHHHHHHHHHTTT--CCEEEEEECHHHHH
T ss_pred             HHh--ccCCCEEEEEecchh-H--H--HHHHHHHHHHhcC--CCEEEEEEhhhccc
Confidence            111  124789999999862 1  1  1223333332222  58999999999753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.64  E-value=1.3e-15  Score=103.37  Aligned_cols=121  Identities=20%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      .....+|+++|.+|+|||||+|++++...........+..   ......+ .+  ..+.++||||..++.....      
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~------   75 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDS---YTKICSV-DGIPARLDILDTAGQEEFGAMRE------   75 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEE---EEEEEEE-TTEEEEEEEEECCCTTTTSCCHH------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCce---EEEEEEE-CCEEEEEEEEECCCchhhHHHHH------
Confidence            3456799999999999999999999864322211111111   1122333 33  4678999999876432211      


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                           .+...+|++++|+++++..+... ..++..+...... ...|+++|+||+|+...
T Consensus        76 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  129 (181)
T 2fn4_A           76 -----QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQ  129 (181)
T ss_dssp             -----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGG
T ss_pred             -----HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence                 12334699999999974322221 2333333222211 12589999999998754

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.64  E-value=8.2e-16  Score=108.03  Aligned_cols=120  Identities=19%  Similarity=0.150  Sum_probs=74.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +..+|+|+|.+|+|||||++.++..........+.+..  ......... ....+.||||+|...+.           .+
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d--~~~k~~~~~~~~v~l~iwDtaGqe~~~-----------~l   78 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGID--FLSKTMYLEDRTIRLQLWDTAGLERFR-----------SL   78 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCG-----------GG
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceE--EEEEEEEecceEEEEEEEECCCchhhh-----------hH
Confidence            45789999999999999999998654322211111111  111122221 12357799999998642           22


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...++..++++++|++.++.-+... ..++..+.+..+..  .|+++|.||+|+.+.
T Consensus        79 ~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~  133 (216)
T 4dkx_A           79 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADK  133 (216)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGG
T ss_pred             HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhc
Confidence            2345678899999999984433332 34555565555444  499999999998654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.64  E-value=1.7e-15  Score=118.04  Aligned_cols=121  Identities=16%  Similarity=0.227  Sum_probs=80.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccc-----------------------------cccCCCCceeEEEeeEEEEeeC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAF-----------------------------KASAGSSGVTITCEMKTTVLKD   67 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~   67 (170)
                      .+..+|+++|.+|+|||||++.|++....                             .......+.|.......+.. .
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-S
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-C
Confidence            45579999999999999999999754100                             00011224455555555655 6


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceE
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFDYM  140 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~  140 (170)
                      +..+.++||||+.+           +..........+|++++|+|++++       ...+..+.+..+... +   ..|+
T Consensus       110 ~~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~---~~~i  174 (483)
T 3p26_A          110 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G---IHNL  174 (483)
T ss_dssp             SCEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T---CCCE
T ss_pred             CceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C---CCcE
Confidence            78999999999965           233333456778999999999855       334444444444332 2   1379


Q ss_pred             EEEEEcCCCCCCC
Q 046239          141 IVVFTGGDYLEDN  153 (170)
Q Consensus       141 ivv~tk~D~~~~~  153 (170)
                      ++|+||+|+.+.+
T Consensus       175 IvviNK~Dl~~~~  187 (483)
T 3p26_A          175 IIAMNKMDNVDWS  187 (483)
T ss_dssp             EEEEECGGGGTTC
T ss_pred             EEEEECcCcccch
Confidence            9999999998743

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.64  E-value=1.3e-15  Score=104.08  Aligned_cols=118  Identities=14%  Similarity=0.037  Sum_probs=73.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ....+|+++|++|+|||||++.+++...........+...   ....... ....+.+|||||...+..           
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------   70 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY---TASFEIDTQRIELSLWDTSGSPYYDN-----------   70 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEECSSCEEEEEEEEECCSGGGTT-----------
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE---EEEEEECCEEEEEEEEECCCChhhhh-----------
Confidence            4557899999999999999999997654222111111111   1122221 224688999999865321           


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ....+...+|++++|+|++++.+...  ..++..+.+...   ..|+++|.||+|+..
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT  125 (184)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred             hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence            12245678899999999974432222  233444444322   259999999999875

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=105.38  Aligned_cols=125  Identities=21%  Similarity=0.114  Sum_probs=70.7

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGK   91 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~   91 (170)
                      +......+|+++|.+|+|||||++.+++...........+...  ....+.+ .+  ..+.+|||+|...+.   .    
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~i~Dt~g~~~~~---~----   87 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDT--YERRIMV-DKEEVTLVVYDIWEQGDAG---G----   87 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTE--EEEEEEE-TTEEEEEEEECCCCCSGGG---H----
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccce--EEEEEEE-CCEEEEEEEEecCCCccch---h----
Confidence            3445668999999999999999999986533211111111111  1122223 33  356789999997521   1    


Q ss_pred             HHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+   ...+...+|++++|+|++++.+... ..++..+..... ....|+++|.||+|+...
T Consensus        88 ~~---~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  145 (195)
T 3cbq_A           88 WL---RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARS  145 (195)
T ss_dssp             HH---HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTT
T ss_pred             hh---HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhcccc
Confidence            11   1123345699999999974322221 233333333221 113599999999998754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.63  E-value=7.8e-16  Score=121.47  Aligned_cols=138  Identities=20%  Similarity=0.273  Sum_probs=80.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEE-ee----------------------------------
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITC-EM----------------------------------   60 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~-~~----------------------------------   60 (170)
                      .....+|+|+|.+|+|||||+|+|+|...........+.|... ..                                  
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            3456899999999999999999999976431001111111100 00                                  


Q ss_pred             --EEEEeeCC---ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcc
Q 046239           61 --KTTVLKDG---QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN-RFSQEEEAAVHRLPTLFGK  134 (170)
Q Consensus        61 --~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~  134 (170)
                        ....+ ..   ..+.++||||+.+.....-.....+...+..+...+|++++|+|+.+ .....+..+++.+.+.   
T Consensus       142 ~~~~~~~-~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---  217 (550)
T 2qpt_A          142 RFMCAQL-PNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---  217 (550)
T ss_dssp             TEEEEEC-CCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred             cceEEec-cccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence              00001 00   36899999999863211000000123333344556799999999975 3566666666555432   


Q ss_pred             cccceEEEEEEcCCCCCCChhhHHHHh
Q 046239          135 KIFDYMIVVFTGGDYLEDNEKTLEDYL  161 (170)
Q Consensus       135 ~~~~~~ivv~tk~D~~~~~~~~~~~~~  161 (170)
                        ..|+++|+||+|++..  ..+.+..
T Consensus       218 --~~pvilVlNK~Dl~~~--~el~~~~  240 (550)
T 2qpt_A          218 --EDKIRVVLNKADMVET--QQLMRVY  240 (550)
T ss_dssp             --GGGEEEEEECGGGSCH--HHHHHHH
T ss_pred             --CCCEEEEEECCCccCH--HHHHHHH
Confidence              2489999999999865  3454443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.63  E-value=3.4e-15  Score=104.60  Aligned_cols=123  Identities=8%  Similarity=0.138  Sum_probs=73.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .....+|+++|++|+|||||+++|++...... ......+....     + ....+.++||||+..+.       .....
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~~-----~-~~~~~~l~Dt~G~~~~~-------~~~~~   74 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAAD-----Y-DGSGVTLVDFPGHVKLR-------YKLSD   74 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETT-----G-GGSSCEEEECCCCGGGT-------HHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEEE-----e-eCceEEEEECCCcHHHH-------HHHHH
Confidence            45568999999999999999999998653221 11112222111     1 35678999999997532       12222


Q ss_pred             HHHhccCCccEEEEEEeCC-C--CCCHHHHHHHHHHHHHhc--ccccceEEEEEEcCCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSAR-N--RFSQEEEAAVHRLPTLFG--KKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~-~--~~~~~~~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ++......+|++++|+|+. +  .+.... .++..+.....  .....|+++|+||+|+....
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  136 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTAR  136 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence            2222223479999999997 2  332222 22333322211  01125899999999998764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.63  E-value=6.1e-16  Score=120.17  Aligned_cols=121  Identities=21%  Similarity=0.311  Sum_probs=81.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCC-CCCCCchHHH-HHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF-DSSAGSEFVG-KEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~-~~~~~~   96 (170)
                      +.+|+++|++|+|||||+|+|++....... ..++.|.......+.+ .+..+.++||||+. ++....+..+ ......
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs-~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccC-CCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            468999999999999999999987532221 1223444444445555 67889999999998 6543222111 112222


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                          ...+|++++|+|+++..+..+..+++.+    .   ..|+++|+||+|+...
T Consensus       321 ----~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~~  365 (482)
T 1xzp_A          321 ----IEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVEK  365 (482)
T ss_dssp             ----HHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCCC
T ss_pred             ----hhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECcccccc
Confidence                3456999999999877777665555433    2   2499999999998754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.8e-15  Score=113.91  Aligned_cols=123  Identities=13%  Similarity=0.160  Sum_probs=82.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+|+|.|++|||||+|+|++.....  ...+.+|.........+ .+..+.++||||+.+........+.+++..++
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            3589999999999999999999976422  23345666666666666 78899999999998765545556666766665


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhcccccceEEEEEEcCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVH-RLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      .+    |++++|+|+.++.  .+.+.++ .|....-.-..+|.++++||.|..
T Consensus       149 ~a----d~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          149 TC----NLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HC----SEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             hc----CccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            54    9999999987432  2333333 333321122335889999999963

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.63  E-value=1.8e-14  Score=108.35  Aligned_cols=128  Identities=21%  Similarity=0.122  Sum_probs=82.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+++++|++|+|||||+|.|++.......  ....|.......... .+..+.++||||+.+........+ +. ..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~-~~-~~  239 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS--YPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEI-EK-QA  239 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC--CTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHH-HH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHH-HH-HH
Confidence            45679999999999999999999987642221  122333333344444 567899999999976432221111 11 11


Q ss_pred             HHhccCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRF--SQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......+|++++|+|+++..  +... ..++..+....+   ..|+++|+||+|....
T Consensus       240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~  295 (357)
T 2e87_A          240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE  295 (357)
T ss_dssp             HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH
T ss_pred             HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh
Confidence            223445689999999986432  4443 455666665443   2599999999998765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.62  E-value=9.5e-16  Score=104.25  Aligned_cols=120  Identities=17%  Similarity=0.011  Sum_probs=69.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+|+++|++|+|||||++.+++...........+.... ....... ....+.++||||...+..           .
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~   72 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNG-ATVNLGLWDTAGQEDYNR-----------L   72 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTT-----------T
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECC-EEEEEEEEECCCChhhhh-----------h
Confidence            45689999999999999999999975532111111100000 0011111 234566999999876431           2


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......++|++++|+|++++.+....  .++..+.....   ..|+++|.||+|+...
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           73 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD  127 (182)
T ss_dssp             GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred             HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC
Confidence            22456788999999999743332222  34445554322   2599999999998765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.62  E-value=7.7e-15  Score=113.09  Aligned_cols=122  Identities=19%  Similarity=0.206  Sum_probs=82.0

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-----------------------------cCCCCceeEEEeeEEEE
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKA-----------------------------SAGSSGVTITCEMKTTV   64 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~   64 (170)
                      .+.++..+|+++|.+++|||||++.|++......                             .....+.|.......+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            3456678999999999999999999965321000                             01123566666666666


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhccccc
Q 046239           65 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFS-------QEEEAAVHRLPTLFGKKIF  137 (170)
Q Consensus        65 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~  137 (170)
                      + .+..+.++||||+.+           +..........+|++++|+|++++..       .+..+.+..+...   .. 
T Consensus        92 ~-~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~---~v-  155 (439)
T 3j2k_7           92 T-EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA---GV-  155 (439)
T ss_pred             c-CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc---CC-
Confidence            6 677999999999874           23333344567899999999986643       3444444443332   21 


Q ss_pred             ceEEEEEEcCCCCC
Q 046239          138 DYMIVVFTGGDYLE  151 (170)
Q Consensus       138 ~~~ivv~tk~D~~~  151 (170)
                      .++++++||+|+..
T Consensus       156 ~~iIvviNK~Dl~~  169 (439)
T 3j2k_7          156 KHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEeecCCCcc
Confidence            24999999999864

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.62  E-value=7.7e-16  Score=114.94  Aligned_cols=126  Identities=19%  Similarity=0.166  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      .|+|+|.+|+|||||+|+|++......  ..+..|.......+.+.....+.++||||+.+..........++++.+.  
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~--  235 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE--  235 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH--
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH--
Confidence            589999999999999999998653221  1222333333444555334789999999975422222223344444333  


Q ss_pred             cCCccEEEEEEeCCC---CCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARN---RFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        +++++++|+|+++   +-...+ ..+++.+..........|+++|+||+|+...
T Consensus       236 --~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~  289 (342)
T 1lnz_A          236 --RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA  289 (342)
T ss_dssp             --HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred             --hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence              3599999999974   222222 3344555543221234699999999998865

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.62  E-value=1.3e-15  Score=101.69  Aligned_cols=117  Identities=21%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+|+++|++|+|||||+|.+++............ .  ........ .+  ..+.++||||..++.   .        .
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~D~~G~~~~~---~--------~   67 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-D--SYRKQVVI-DGETCLLDILDTAGQEEYS---A--------M   67 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-E--EEEEEEEE-TTEEEEEEEEECCCCSSCC---H--------H
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-e--EEEEEEEE-CCEEEEEEEEECCCchhhh---H--------H
Confidence            36899999999999999999997654222111111 1  11122222 22  357899999987642   1        1


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ...+...+|++++|+++.+..+... ..++..+...... ...|+++|+||+|+..
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~  122 (166)
T 2ce2_X           68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA  122 (166)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred             HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence            1122335699999999874322222 3334444443321 1259999999999875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.62  E-value=2.1e-15  Score=105.05  Aligned_cols=119  Identities=13%  Similarity=0.037  Sum_probs=74.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      .....+|+++|++|+|||||++.+++.........+.+...   ...+.+. ....+.+|||||...+..          
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~----------   91 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY---TASFEIDTQRIELSLWDTSGSPYYDN----------   91 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEESSSSEEEEEEEEECCSGGGTT----------
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE---EEEEEECCEEEEEEEEeCCCcHhhhH----------
Confidence            34557999999999999999999998654322111111111   1222221 234688999999865321          


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                       ....+...+|++++|+|+++..+...  ..++..+.+...   ..|+++|.||+|+..
T Consensus        92 -~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  146 (205)
T 1gwn_A           92 -VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT  146 (205)
T ss_dssp             -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred             -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence             12345678999999999974432222  234444444322   259999999999875

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.62  E-value=9.9e-15  Score=109.85  Aligned_cols=129  Identities=20%  Similarity=0.258  Sum_probs=68.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC-----CceeEEEeeEEEEee-CC--ceEEEEeCCCCCCCCC-----
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTITCEMKTTVLK-DG--QVVNVIDTPGLFDSSA-----   84 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~-----   84 (170)
                      ...+|+++|++|+|||||+|+|++...+..+...     ...|........... .+  ..+.++||||+.++..     
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            3467999999999999999999887554332211     012222222222111 22  2688999999965422     


Q ss_pred             --CchHHHHHHHHHHHhc---------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           85 --GSEFVGKEIVKCIGLA---------KGGIHAVLVVFSA-RNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        85 --~~~~~~~~~~~~~~~~---------~~~~~~il~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        .......++..++...         ..++|+++|+++. .+.+...+..+++.+.    ..  .|+++|+||+|+...
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~~--~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTLTL  189 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----cC--CCEEEEEECCCCCCH
Confidence              1122222222333221         2346788888876 5577777765555442    22  499999999999875

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.62  E-value=1.1e-14  Score=106.79  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=80.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc--C-CCCce----------------------eEEE-------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS--A-GSSGV----------------------TITC-------------   58 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~--~-~~~~~----------------------t~~~-------------   58 (170)
                      ...++|+++|.+|+|||||+|+|+|......+  . ...+.                      +...             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            45579999999999999999999997643111  1 11111                      0000             


Q ss_pred             -----------eeEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhccCCccEEE-EEEeCCCCCCHHHH-H
Q 046239           59 -----------EMKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKCIGLAKGGIHAVL-VVFSARNRFSQEEE-A  123 (170)
Q Consensus        59 -----------~~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~~~~~~~~~~~~-~  123 (170)
                                 .......+....+.++||||+.....  ..+.....+......+...++.++ +|++++..++..+. .
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                       00011111246899999999975321  012222233344444445666555 78998766655553 3


Q ss_pred             HHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhh
Q 046239          124 AVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGH  163 (170)
Q Consensus       124 ~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~  163 (170)
                      +++.+..   .  ..|+++|+||+|+..... ...+.++.
T Consensus       184 ~~~~~~~---~--~~~~i~V~NK~Dl~~~~~-~~~~~~~~  217 (299)
T 2aka_B          184 IAKEVDP---Q--GQRTIGVITKLDLMDEGT-DARDVLEN  217 (299)
T ss_dssp             HHHHHCT---T--CSSEEEEEECGGGSCTTC-CCHHHHTT
T ss_pred             HHHHhCC---C--CCeEEEEEEccccCCCCc-hHHHHHhC
Confidence            4443332   1  259999999999986531 23444443

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.62  E-value=2.5e-15  Score=103.71  Aligned_cols=120  Identities=19%  Similarity=0.124  Sum_probs=72.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      ..+..+|+++|.+|+|||||++++++.........+.+ +..  .....+ .  ...+.++||||...    .. .   .
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~--~~~~~~-~~~~~~~~l~Dt~G~~~----~~-~---~   92 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE-STY--RHQATI-DDEVVSMEILDTAGQED----TI-Q---R   92 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEE--EEEEEE-TTEEEEEEEEECCCCCC----CH-H---H
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCC-ceE--EEEEEE-CCEEEEEEEEECCCCCc----cc-c---h
Confidence            35668999999999999999999998654322111111 111  122222 2  24688999999975    11 1   1


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                          ..+...+|++++|+|+++..+..+ ..++..+.+.... ...|+++|.||+|+...
T Consensus        93 ----~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~  147 (196)
T 2atv_A           93 ----EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHS  147 (196)
T ss_dssp             ----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGG
T ss_pred             ----hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccc
Confidence                122345699999999974322222 2334444443321 22589999999998764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.61  E-value=8.7e-15  Score=112.71  Aligned_cols=120  Identities=15%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccc--------------cC-----------------CCCceeEEEeeEEEEe
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA-----------------GSSGVTITCEMKTTVL   65 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~   65 (170)
                      .+..+|+++|..++|||||+++|++......              +.                 ...+.|.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4457999999999999999999985431000              00                 0012333333334444


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEE
Q 046239           66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFT  145 (170)
Q Consensus        66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t  145 (170)
                       .+..+.++||||+.++       ...+    ......+|++++|+|++++...+..+.+..+... +   .+++++|+|
T Consensus       102 -~~~~~~iiDtpGh~~f-------~~~~----~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~---~~~iIvviN  165 (434)
T 1zun_B          102 -AKRKFIIADTPGHEQY-------TRNM----ATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-G---IKHIVVAIN  165 (434)
T ss_dssp             -SSEEEEEEECCCSGGG-------HHHH----HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-T---CCEEEEEEE
T ss_pred             -CCceEEEEECCChHHH-------HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEE
Confidence             5678999999998752       1222    2345788999999999878777776666555442 2   137999999


Q ss_pred             cCCCCCC
Q 046239          146 GGDYLED  152 (170)
Q Consensus       146 k~D~~~~  152 (170)
                      |+|+.+.
T Consensus       166 K~Dl~~~  172 (434)
T 1zun_B          166 KMDLNGF  172 (434)
T ss_dssp             CTTTTTS
T ss_pred             cCcCCcc
Confidence            9999874

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.61  E-value=3.7e-15  Score=110.94  Aligned_cols=116  Identities=15%  Similarity=0.098  Sum_probs=73.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      +..+|+++|.+|+|||||++.+++......     ..|.......+.. .+..+.++||||...+...           .
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~-----------~  226 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----------W  226 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CCS-----------H
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHHHH-----------H
Confidence            445899999999999999999998664221     1233344445555 6788999999997754321           2


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...+|++++|+|+++.-+...  ...++.+.+...  ...|+++|+||+|+...
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~  281 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA  281 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             HHHhccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence            234567899999999975444332  122222222211  13589999999998865

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.61  E-value=1.4e-15  Score=119.34  Aligned_cols=119  Identities=14%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcccc---c-----------------cCCCCceeEEEeeEEEEeeCCceEEEEeCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFK---A-----------------SAGSSGVTITCEMKTTVLKDGQVVNVIDTP   77 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~---~-----------------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   77 (170)
                      ...+|+++|.+|+|||||+|+|++.....   .                 .....+.|.......+.+ .+..+.|+|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence            45789999999999999999996211000   0                 000122333344455555 67899999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           78 GLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      |+.++.           ......+..+|++++|+|+.++.+......+..+...   .  .|+++|+||+|+....
T Consensus        91 G~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~---~--iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           91 GHADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR---H--TPIMTFINKMDRDTRP  150 (528)
T ss_dssp             CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT---T--CCEEEEEECTTSCCSC
T ss_pred             CchhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEeCCCCcccc
Confidence            998753           1223455678999999999988888887777766553   2  4999999999997664

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.61  E-value=1.5e-14  Score=100.62  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=73.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKE   92 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~   92 (170)
                      ...++.+++++|++|+|||||+|.|+|...........+.+....  .+.+ .+ .+.++||||+.......  ......
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~   97 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQR   97 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEE-ET-TEEEEECCCCC------CCHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEe-cC-CEEEEECcCCcccccCHHHHHHHHH
Confidence            456678999999999999999999998762111011122222222  2222 22 67899999996532111  111112


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...........++++++++++....+..+....+++...     ..|++++.||+|.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A           98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-----NIAVLVLLTKADKLAS  152 (210)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCH
T ss_pred             HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEecccCCCc
Confidence            222222223567899999999866666555555554432     2488999999998865

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.61  E-value=1.3e-16  Score=110.52  Aligned_cols=120  Identities=18%  Similarity=0.167  Sum_probs=71.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|.+|+|||||+|+|++........  ...+.......+.+ .+  ..+.++||||...+....        
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------   99 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTIT--------   99 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCS--------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHH--------
Confidence            345799999999999999999999765322111  11222223333333 33  468899999987643221        


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         ..+...+|++++|+|+++..+... ..++..+......  ..|+++|.||+|+...
T Consensus       100 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~  153 (199)
T 3l0i_B          100 ---SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK  153 (199)
T ss_dssp             ---CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--
T ss_pred             ---HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc
Confidence               134678899999999985433222 2233333332221  2599999999998644

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.61  E-value=5.4e-15  Score=115.11  Aligned_cols=118  Identities=19%  Similarity=0.266  Sum_probs=81.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccc-----cccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAF-----KASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      +..+|+++|..++|||||+++|++....     .......+.|.......+.+ .+..+.++||||+.+           
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~-----------   85 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD-----------   85 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHH-----------
Confidence            4579999999999999999999986511     01122334555555555555 678999999999853           


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +..........+|++++|+|++++...+..+.+..+...   .  .|.++++||+|+.+.
T Consensus        86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~---~--ip~IvviNK~Dl~~~  140 (482)
T 1wb1_A           86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF---N--IPIIVVITKSDNAGT  140 (482)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCBCEEEECTTSSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc---C--CCEEEEEECCCcccc
Confidence            334444566788999999999878777777777655542   2  377999999999864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.61  E-value=7.8e-15  Score=106.39  Aligned_cols=119  Identities=18%  Similarity=0.208  Sum_probs=72.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|.+|+|||||+|+|+|...... . .++.|.......+..  +..+.++||||+.++.....  ...+.....
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~-~-~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVG-N-WPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCC-S-SSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCccc-C-CCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence            46899999999999999999999753222 1 223343322222221  56799999999987643221  111111111


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                       ....+|++++|+|+++ . .....+...+.+   ..  .|+++|+||+|+..
T Consensus        77 -~~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~---~~--~p~ilv~NK~Dl~~  121 (272)
T 3b1v_A           77 -LSQRADSILNVVDATN-L-ERNLYLTTQLIE---TG--IPVTIALNMIDVLD  121 (272)
T ss_dssp             -HTTCCSEEEEEEEGGG-H-HHHHHHHHHHHH---TC--SCEEEEEECHHHHH
T ss_pred             -hcCCCCEEEEEecCCc-h-HhHHHHHHHHHh---cC--CCEEEEEEChhhCC
Confidence             1247899999999873 1 112223333332   12  59999999999753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.61  E-value=8.3e-15  Score=100.47  Aligned_cols=122  Identities=20%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      .....+|+++|.+|+|||||++.+++.........+.+...   ....... ....+.+|||||...+...        .
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~   86 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY---SSEETVDHQPVHLRVMDTADLDTPRNC--------E   86 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEETTEEEEEEEEECCC---CCCT--------H
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee---eEEEEECCEEEEEEEEECCCCCcchhH--------H
Confidence            34557999999999999999999997653222111111111   1112221 1246788999998765321        1


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK-KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~  152 (170)
                          .+...+|++++|+++++.-+... ..++..+...... ....|+++|.||+|+...
T Consensus        87 ----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~  142 (187)
T 3c5c_A           87 ----RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY  142 (187)
T ss_dssp             ----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred             ----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence                13456799999999974322222 2334444433210 023599999999998653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.60  E-value=3.9e-15  Score=101.00  Aligned_cols=113  Identities=23%  Similarity=0.175  Sum_probs=71.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      .+..+|+++|.+|+|||||++.+++...... ..+.+ ...  ...... .+  ..+.+|||||...            .
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~-~~t~~-~~~--~~~~~~-~~~~~~l~i~Dt~G~~~------------~   67 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQY--KKEMLV-DGQTHLVLIREEAGAPD------------A   67 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCC-SSCSS-SEE--EEEEEE-TTEEEEEEEEECSSSCC------------H
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCc-CCCcc-eeE--EEEEEE-CCEEEEEEEEECCCCch------------h
Confidence            4568999999999999999999997654321 11111 111  122222 33  3578899999874            1


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccceEEEEEEcCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKK-IFDYMIVVFTGGDYL  150 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~  150 (170)
                          .+..++|++++|+|++++.+... ..+++++....... ...|+++|.||+|+.
T Consensus        68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence                12344699999999975433333 23333455543211 235999999999984

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.60  E-value=7.1e-15  Score=102.54  Aligned_cols=118  Identities=19%  Similarity=0.090  Sum_probs=74.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|.+|+|||||++.+++...........+...   ...+.. .+  ..+.+|||||...+..          
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------   72 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVAV-DGQIVNLGLWDTAGQEDYSR----------   72 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE---EEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE---EEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence            4568999999999999999999997653222111111111   112222 23  4788999999986532          


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       ....+...+|++++|+|+++..+...  ..++..+.....   ..|+++|.||+|+...
T Consensus        73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  128 (212)
T 2j0v_A           73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD  128 (212)
T ss_dssp             ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred             -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC
Confidence             12245678899999999974332222  134444544322   3599999999998765

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.60  E-value=1.2e-14  Score=110.77  Aligned_cols=117  Identities=16%  Similarity=0.158  Sum_probs=82.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccc--------------cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS   83 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (170)
                      +..+|+++|..++|||||+++|++......              .....+.|.......+.. .+..+.++||||+.+  
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~--   78 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD--   78 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH--
Confidence            457899999999999999999987421100              001234455444444444 568899999999964  


Q ss_pred             CCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCC
Q 046239           84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLE  151 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~  151 (170)
                               +..........+|++++|+|++++...+..+.+..+...   .  .| +++++||+|+..
T Consensus        79 ---------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~---~--vp~iivviNK~Dl~~  133 (397)
T 1d2e_A           79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI---G--VEHVVVYVNKADAVQ  133 (397)
T ss_dssp             ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCCEEEEEECGGGCS
T ss_pred             ---------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCeEEEEEECcccCC
Confidence                     333444567889999999999878777777666555442   2  25 789999999885

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.60  E-value=9.9e-15  Score=116.45  Aligned_cols=122  Identities=15%  Similarity=0.217  Sum_probs=82.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc--------------C---------------CCCceeEEEeeEEEEee
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------A---------------GSSGVTITCEMKTTVLK   66 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~--------------~---------------~~~~~t~~~~~~~~~~~   66 (170)
                      ..+..+|+++|.+|+|||||+|.|++.......              .               ...+.|.......+.+ 
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-  242 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-  242 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence            456789999999999999999999875321100              0               0124455555555655 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccce
Q 046239           67 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFDY  139 (170)
Q Consensus        67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~  139 (170)
                      .+..+.|+||||+.+           +..........+|++++|+|++++       ...+....+..+.. ++   ..+
T Consensus       243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg---i~~  307 (611)
T 3izq_1          243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHN  307 (611)
T ss_dssp             SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT---CCE
T ss_pred             CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC---CCe
Confidence            678999999999975           344445567889999999999743       22333344333333 22   146


Q ss_pred             EEEEEEcCCCCCCC
Q 046239          140 MIVVFTGGDYLEDN  153 (170)
Q Consensus       140 ~ivv~tk~D~~~~~  153 (170)
                      +++|+||+|+...+
T Consensus       308 iIVVvNKiDl~~~~  321 (611)
T 3izq_1          308 LIIAMNKMDNVDWS  321 (611)
T ss_dssp             EEEEEECTTTTTTC
T ss_pred             EEEEEecccccchh
Confidence            99999999998743

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.58  E-value=3.4e-14  Score=106.98  Aligned_cols=125  Identities=14%  Similarity=0.140  Sum_probs=74.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+++++|++|+|||||+|.|++......  .....|.......+.+ .+..+.++||||+...  .+......+..... 
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~--lp~~lve~f~~tl~-  253 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRG--IPPQIVDAFFVTLS-  253 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSS--CCGGGHHHHHHHHH-
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhc--CCHHHHHHHHHHHH-
Confidence            3599999999999999999999764221  1122333333344555 5678899999998541  11222233333332 


Q ss_pred             ccCCccEEEEEEeCCCCCC--HHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFS--QEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+|++++|+|+++..+  .... .+.+.+.+. +. ...|+++|.||+|++..
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKING  307 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCS
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCc
Confidence            4567899999999874431  1111 223333332 21 12589999999999865

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.58  E-value=1.1e-14  Score=99.59  Aligned_cols=115  Identities=23%  Similarity=0.142  Sum_probs=71.8

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGK   91 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~   91 (170)
                      ....+..+|+++|.+|+|||||++.+++........ +...   .......+ .+  ..+.+|||||...+.        
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~-~t~~---~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------   81 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEES-PEGG---RFKKEIVV-DGQSYLLLIRDEGGPPELQ--------   81 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCC-TTCE---EEEEEEEE-TTEEEEEEEEECSSSCCHH--------
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-CCcc---eEEEEEEE-CCEEEEEEEEECCCChhhh--------
Confidence            445567899999999999999999998765432211 1111   11133333 34  356779999997621        


Q ss_pred             HHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                              +...+|++++|+|+++..+..+ ..++..+..... ....|+++|.||+|+.
T Consensus        82 --------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           82 --------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             --------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred             --------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence                    2234699999999985433333 233343433211 1235999999999984

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.58  E-value=3e-15  Score=102.40  Aligned_cols=118  Identities=17%  Similarity=0.148  Sum_probs=65.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe------eCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL------KDGQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      ..+|+++|++|+|||||++.+++......+.  ...|..........      .....+.+|||+|...+.         
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~--~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------   70 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGM--QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFY---------   70 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEEC---------CEEEEEEECSHHHHH---------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCC--cceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHH---------
Confidence            3689999999999999999999863211111  11111111111111      134578999999975321         


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        .....+..+.+++++|+|++++.+..+  ..++..+....   ...|+++|.||+|+...
T Consensus        71 --~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  127 (184)
T 2zej_A           71 --STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDE  127 (184)
T ss_dssp             --TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCH
T ss_pred             --HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccc
Confidence              111122345688999999874422111  23333333321   12589999999998755

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.58  E-value=1.3e-14  Score=113.99  Aligned_cols=120  Identities=17%  Similarity=0.165  Sum_probs=80.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccc--c------------------CCCCceeEEEeeEEEEeeCCceEEEEeC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA--S------------------AGSSGVTITCEMKTTVLKDGQVVNVIDT   76 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   76 (170)
                      ....+|+++|.+|+|||||+++|++......  +                  ....+.|.......+.+ .+..+.++||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT   89 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT   89 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence            3457999999999999999999985321100  0                  01122333333344555 6788999999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ||+.++.           ......+..+|++++|+|+.++........++.+...   .  .|+++++||+|.....
T Consensus        90 PG~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~---~--ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           90 PGHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR---D--TPILTFMNKLDRDIRD  150 (529)
T ss_dssp             CCSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT---T--CCEEEEEECTTSCCSC
T ss_pred             CCChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc---C--CCEEEEEcCcCCcccc
Confidence            9998753           1122345678999999999878777766666554432   2  4899999999998764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.58  E-value=7.7e-14  Score=106.65  Aligned_cols=122  Identities=16%  Similarity=0.268  Sum_probs=78.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-cCCCCceeEEEeeEEEEee--------------C--------CceEE
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTITCEMKTTVLK--------------D--------GQVVN   72 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~   72 (170)
                      ..+..+|+++|..++|||||+++|+|...... .....+.|.........+.              .        ...+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            34668999999999999999999997642111 1112233333222211110              0        15789


Q ss_pred             EEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        73 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ++||||+.+           +..........+|++++|+|++++. ..+..+.+..+.. ++.   .|+++++||+|+..
T Consensus        85 iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~  149 (408)
T 1s0u_A           85 FVDSPGHET-----------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVD  149 (408)
T ss_dssp             EEECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSC
T ss_pred             EEECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCC
Confidence            999999853           3333445567889999999998765 5666665554443 222   48999999999886


Q ss_pred             C
Q 046239          152 D  152 (170)
Q Consensus       152 ~  152 (170)
                      .
T Consensus       150 ~  150 (408)
T 1s0u_A          150 E  150 (408)
T ss_dssp             T
T ss_pred             H
Confidence            5

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.58  E-value=5.7e-15  Score=112.80  Aligned_cols=120  Identities=15%  Similarity=0.161  Sum_probs=80.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc---------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS---------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      ...+..+|+++|.+++|||||+++|++.......               ....+.|.......+.. .+..+.++||||+
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~   85 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGH   85 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCS
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCCh
Confidence            3455689999999999999999999873110000               00122333333333444 5678999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLE  151 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~  151 (170)
                      .++           ..........+|++++|+|+.++...+..+.+..+...   .  .| +++++||+|+..
T Consensus        86 ~~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~---~--ip~iivviNK~Dl~~  142 (405)
T 2c78_A           86 ADY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV---G--VPYIVVFMNKVDMVD  142 (405)
T ss_dssp             GGG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT---T--CCCEEEEEECGGGCC
T ss_pred             HHH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc---C--CCEEEEEEECccccC
Confidence            853           22223345678999999999878777777766655543   2  25 899999999885

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.58  E-value=1.9e-14  Score=110.07  Aligned_cols=123  Identities=15%  Similarity=0.245  Sum_probs=79.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc-ccCCCCceeEEEeeEEEEee----------------------CCceE
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTITCEMKTTVLK----------------------DGQVV   71 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~----------------------~~~~~   71 (170)
                      +..+..+|+++|..++|||||+++|+|..... ......+.|.........+.                      ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            34556799999999999999999999754211 11111233333222221110                      01578


Q ss_pred             EEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           72 NVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      .++||||+.+           +..........+|++++|+|++++. ..+..+.+..+... +.   .|+++++||+|+.
T Consensus        86 ~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~  150 (410)
T 1kk1_A           86 SFIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELV  150 (410)
T ss_dssp             EEEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred             EEEECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCC
Confidence            9999999853           2333334556789999999998776 66666666555432 22   4899999999988


Q ss_pred             CC
Q 046239          151 ED  152 (170)
Q Consensus       151 ~~  152 (170)
                      ..
T Consensus       151 ~~  152 (410)
T 1kk1_A          151 DK  152 (410)
T ss_dssp             CH
T ss_pred             CH
Confidence            75

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.58  E-value=2.6e-14  Score=109.12  Aligned_cols=121  Identities=17%  Similarity=0.193  Sum_probs=77.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeE--------------EE-----eeEEEEeeCCceEEEEe
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTI--------------TC-----EMKTTVLKDGQVVNVID   75 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~--------------~~-----~~~~~~~~~~~~~~l~D   75 (170)
                      ...+..+|+++|.+|+|||||+|+|++...... ......+.              ..     ....... ....+.++|
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiD   81 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFID   81 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceeccccccccccccccc-ccceEEEEE
Confidence            345678999999999999999999998532110 00000000              00     0000000 125789999


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           76 TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      |||+.+           +..........+|++++|+|++++. ..+..+.+..+... +.   +|+++|+||+|+.+.
T Consensus        82 tPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~  144 (403)
T 3sjy_A           82 APGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK  144 (403)
T ss_dssp             CCCCGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred             CCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch
Confidence            999864           2223334456789999999998776 55566666555443 22   489999999999866

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.57  E-value=4.2e-15  Score=115.14  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=77.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc---cc-----------cccC---------------CCCceeEEEeeEEEEeeC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK---AF-----------KASA---------------GSSGVTITCEMKTTVLKD   67 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~---~~-----------~~~~---------------~~~~~t~~~~~~~~~~~~   67 (170)
                      .+..+|+++|.+++|||||+++|++..   ..           ..+.               ...+.|.......+.. .
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~   83 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P   83 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-S
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-C
Confidence            345799999999999999999998531   00           0000               0123454444455555 5


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccceE
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQ-------EEEAAVHRLPTLFGKKIFDYM  140 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~  140 (170)
                      +..+.++||||+.+           +..........+|++++|+|+.++...       +..+.+..+.. .  .. .++
T Consensus        84 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~--~v-~~i  148 (458)
T 1f60_A           84 KYQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-L--GV-RQL  148 (458)
T ss_dssp             SEEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-T--TC-CEE
T ss_pred             CceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-c--CC-CeE
Confidence            77899999999874           333444567899999999999754322       33333332222 2  11 359


Q ss_pred             EEEEEcCCCCCC
Q 046239          141 IVVFTGGDYLED  152 (170)
Q Consensus       141 ivv~tk~D~~~~  152 (170)
                      ++++||+|+...
T Consensus       149 ivviNK~Dl~~~  160 (458)
T 1f60_A          149 IVAVNKMDSVKW  160 (458)
T ss_dssp             EEEEECGGGGTT
T ss_pred             EEEEEccccccC
Confidence            999999999853

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.57  E-value=1.3e-14  Score=111.71  Aligned_cols=119  Identities=24%  Similarity=0.285  Sum_probs=74.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc---ccc--------------------------ccCCCCceeEEEeeEEEEeeC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK---AFK--------------------------ASAGSSGVTITCEMKTTVLKD   67 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~---~~~--------------------------~~~~~~~~t~~~~~~~~~~~~   67 (170)
                      .+..+|+++|..|+|||||+++|++..   ...                          ......+.|.......+.+ .
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~   82 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K   82 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence            456799999999999999999998531   000                          0011234555555555555 6


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceE
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFDYM  140 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~  140 (170)
                      +..+.++||||+.++           ..........+|++++|+|+.++       ...+..+.+..+.. ++   ..++
T Consensus        83 ~~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~---~~~i  147 (435)
T 1jny_A           83 KYFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MG---LDQL  147 (435)
T ss_dssp             SCEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TT---CTTC
T ss_pred             CeEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeE
Confidence            788999999999862           23344567889999999999854       22233333333332 21   1368


Q ss_pred             EEEEEcCCCCC
Q 046239          141 IVVFTGGDYLE  151 (170)
Q Consensus       141 ivv~tk~D~~~  151 (170)
                      ++++||+|+..
T Consensus       148 ivviNK~Dl~~  158 (435)
T 1jny_A          148 IVAVNKMDLTE  158 (435)
T ss_dssp             EEEEECGGGSS
T ss_pred             EEEEEcccCCC
Confidence            99999999987

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.57  E-value=1.4e-14  Score=99.00  Aligned_cols=125  Identities=18%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|++|+|||||+|++++...... . .++.+.  ......+ .  .+.++||||+.............+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~-~~~~t~--~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRG-K-RPGVTR--KIIEIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSS-S-STTCTT--SCEEEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccC-C-CCCccc--eeEEEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            4799999999999999999998763221 1 122222  2222333 2  788999999865433222222222222222


Q ss_pred             c----cCCccEEEEEEeCCCCCCHHHHHHHH--------HHHHHhcccccceEEEEEEcCCCCCCC
Q 046239          100 A----KGGIHAVLVVFSARNRFSQEEEAAVH--------RLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       100 ~----~~~~~~il~v~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +    ...+++++++.+.. .+......+..        .+..... ....|+++|.||+|+....
T Consensus        75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~  138 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTIVAVNKLDKIKNV  138 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEEEEEECGGGCSCH
T ss_pred             HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHH-hcCCceEEEeehHhccCcH
Confidence            1    34567788888765 22111111111        0111111 1125999999999988763

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.56  E-value=3.7e-16  Score=122.47  Aligned_cols=117  Identities=16%  Similarity=0.211  Sum_probs=84.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..++|+++|.+|+|||||+++|++......  ...+.|.....+...+..+..+.+|||||+..+.....          
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~----------   70 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA----------   70 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB----------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH----------
Confidence            457899999999999999999997654332  22234443333333333456789999999987643222          


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       .....+|++++|++++++...+....+..+...   .  .|+++++||+|+...
T Consensus        71 -~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~--vPiIVViNKiDl~~~  119 (537)
T 3izy_P           71 -RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA---H--VPIVLAINKCDKAEA  119 (537)
T ss_dssp             -SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---T--CCEEECCBSGGGTTT
T ss_pred             -HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEeccccccc
Confidence             355678999999999888888877776665543   2  489999999998754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.56  E-value=7.2e-14  Score=113.01  Aligned_cols=121  Identities=26%  Similarity=0.312  Sum_probs=81.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC---Cccccc----c---------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG---RKAFKA----S---------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~---~~~~~~----~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      .....+|+++|.+|+|||||+|+|++   ......    +         ....+.|.........+ .+..+.++||||+
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~   85 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH   85 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence            34567999999999999999999984   211000    0         00123444444455556 6788999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .++.       .+...    .+..+|++++|+|+.++.+..+...+..+...   .  .|+++|+||+|+...+
T Consensus        86 ~df~-------~~~~~----~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~---~--~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           86 VDFT-------VEVER----SLRVLDGAVTVLDAQSGVEPQTETVWRQATTY---G--VPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             SSCC-------HHHHH----HHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTCC
T ss_pred             cchH-------HHHHH----HHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc---C--CCEEEEEECCCccccc
Confidence            8753       12222    22346999999999888888887777766553   2  4999999999998763

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.56  E-value=4.8e-14  Score=105.85  Aligned_cols=139  Identities=14%  Similarity=0.158  Sum_probs=77.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcccccc--CCCC-ce-eEEE-----------------------------------
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS--AGSS-GV-TITC-----------------------------------   58 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~--~~~~-~~-t~~~-----------------------------------   58 (170)
                      ..++|+++|.+|+|||||+|+|+|......+  .... +. +...                                   
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3478999999999999999999997642211  1111 11 0000                                   


Q ss_pred             ----------eeEEEEeeCCceEEEEeCCCCCCCCCC--chHHHHHHHHHHHhcc-CCccEEEEEEeCCCCCCHHHH-HH
Q 046239           59 ----------EMKTTVLKDGQVVNVIDTPGLFDSSAG--SEFVGKEIVKCIGLAK-GGIHAVLVVFSARNRFSQEEE-AA  124 (170)
Q Consensus        59 ----------~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~-~~  124 (170)
                                ....+..+....+.||||||+......  .......+..+...+. ...+++++|++++..+...+. .+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i  189 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV  189 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence                      001111112467999999999753211  1222223333333333 344567777787655554443 23


Q ss_pred             HHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239          125 VHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG  162 (170)
Q Consensus       125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~  162 (170)
                      ++.+..   ..  .|+++|+||+|+++.. ....++++
T Consensus       190 ~~~~~~---~~--~~~i~V~NK~Dl~~~~-~~~~~~~~  221 (353)
T 2x2e_A          190 AKEVDP---QG--QRTIGVITKLDLMDEG-TDARDVLE  221 (353)
T ss_dssp             HHHHCT---TC--TTEEEEEECGGGSCTT-CCCHHHHT
T ss_pred             HHHhCc---CC--CceEEEeccccccCcc-hhHHHHHh
Confidence            333322   22  5999999999998653 12344444

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.55  E-value=7.6e-14  Score=110.09  Aligned_cols=120  Identities=18%  Similarity=0.234  Sum_probs=86.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCc--------------------cccccCCCCceeEEEeeEEEEeeCCceEEEEeCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRK--------------------AFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTP   77 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~--------------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   77 (170)
                      +-++|+|+|..++|||||..+|+-..                    .+.......+.|+......+.| ++..+.|+|||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence            45899999999999999998875111                    0011123345666666677778 88999999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239           78 GLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE  154 (170)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (170)
                      |+.+|.       .+....    +.-+|.+++|+|+.++...+....++...+.   +  .|.++++||+|....+.
T Consensus       109 GHvDF~-------~Ev~ra----L~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~--lp~i~fINK~Dr~~ad~  169 (548)
T 3vqt_A          109 GHQDFS-------EDTYRV----LTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---A--TPVMTFVNKMDREALHP  169 (548)
T ss_dssp             CGGGCS-------HHHHHH----HHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSCCCCH
T ss_pred             CcHHHH-------HHHHHH----HHhcCceEEEeecCCCcccccHHHHHHHHHh---C--CceEEEEecccchhcch
Confidence            999874       233333    3445999999999999999999888877775   2  49999999999987743

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=6.4e-14  Score=98.05  Aligned_cols=121  Identities=22%  Similarity=0.133  Sum_probs=70.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccc-cccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ...+|+++|.+|+|||||+|.+++.... .....+.+.+.  ......+ .+.  .+.++||+|...          +..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~--~~~~i~~-~~~~~~l~~~Dt~g~~~----------~~~  102 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDT--YERTLMV-DGESATIILLDMWENKG----------ENE  102 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTE--EEEEEEE-TTEEEEEEEECCTTTTH----------HHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceee--EEEEEEE-CCeeeEEEEeecCCCcc----------hhh
Confidence            3478999999999999999999975421 11111111111  1122233 333  467899998753          112


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+...++++++|+++++.-+.... .++..+.+... ....|+++|.||+|+.+.
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~  160 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRC  160 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGG
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcC
Confidence            2234466788999999999743222221 23333332211 113599999999998653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.55  E-value=1.7e-13  Score=110.88  Aligned_cols=121  Identities=22%  Similarity=0.262  Sum_probs=80.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC---Cccccc----c---------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG---RKAFKA----S---------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~---~~~~~~----~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      .....+|+++|.+|+|||||+++|+.   ......    +         ....+.|.........+ .+..+.++||||+
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~   87 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGH   87 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCc
Confidence            34567999999999999999999983   211000    0         01223444455555666 6789999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .++.       .+...    .+..+|++++|+|+.++.+......+..+...   .  .|+++|+||+|....+
T Consensus        88 ~df~-------~~~~~----~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           88 VDFT-------IEVER----SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY---K--VPRIAFANKMDKTGAD  145 (691)
T ss_dssp             TTCH-------HHHHH----HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTCC
T ss_pred             cchH-------HHHHH----HHHHCCEEEEEEECCCCcchhhHHHHHHHHHc---C--CCEEEEEECCCcccCC
Confidence            8641       12222    33456999999999888888877777665543   2  4899999999998764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.54  E-value=4.7e-14  Score=102.19  Aligned_cols=129  Identities=19%  Similarity=0.264  Sum_probs=74.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCc-----eeEEEeeEEEEee---CCceEEEEeCCCCCCCCCCc---h
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-----VTITCEMKTTVLK---DGQVVNVIDTPGLFDSSAGS---E   87 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~-----~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~---~   87 (170)
                      .++++++|+||+|||||+|+|+|...+..|.....     .+.......+...   -...+.++|+||+.......   .
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            36899999999999999999999876655422111     1110011111110   12367999999997532211   1


Q ss_pred             HHH----HHHHHHHHh----------ccCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           88 FVG----KEIVKCIGL----------AKGGIHAVLVVFSA-RNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        88 ~~~----~~~~~~~~~----------~~~~~~~il~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...    .++......          ...++++.+++++. .+++++.+..+++.+.+.      .++++|+||+|.+..
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence            111    111111111          22346788888885 478999998777777653      389999999999976


Q ss_pred             C
Q 046239          153 N  153 (170)
Q Consensus       153 ~  153 (170)
                      .
T Consensus       156 ~  156 (270)
T 3sop_A          156 E  156 (270)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.54  E-value=5e-14  Score=114.00  Aligned_cols=124  Identities=19%  Similarity=0.224  Sum_probs=77.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCce-------------eEEE-------------------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-------------TITC-------------------------   58 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~-------------t~~~-------------------------   58 (170)
                      ....+|+++|.+|+|||||+|+|+|......+..+...             +...                         
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            45689999999999999999999997654332211110             1100                         


Q ss_pred             --------------eeEEEEeeCC---ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH
Q 046239           59 --------------EMKTTVLKDG---QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE  121 (170)
Q Consensus        59 --------------~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~  121 (170)
                                    ....+.++..   ..+.++||||+.+...        ....+..+...+|++++|++++...+..+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e  218 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGE  218 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence                          0000111000   4689999999975211        12223334467899999999987788777


Q ss_pred             HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          122 EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       122 ~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+...   +... ..|+++|+||+|+...
T Consensus       219 ~~~l~~~---l~~~-~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          219 RRYLENY---IKGR-GLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHHHHH---TTTS-CCCEEEEEECGGGGGG
T ss_pred             HHHHHHH---HHhh-CCCEEEEEECcccccc
Confidence            6555322   1111 2489999999998754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.54  E-value=9.4e-14  Score=112.46  Aligned_cols=132  Identities=14%  Similarity=0.183  Sum_probs=80.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC--CC------------------------------------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--SS------------------------------------------   52 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~--~~------------------------------------------   52 (170)
                      ..-++|+++|.+++|||||+|+|+|......+..  +.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            3457999999999999999999999764222111  10                                          


Q ss_pred             -----ceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHh-ccCCccEEEEEEeCCCCCCHHHH-H
Q 046239           53 -----GVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKCIGL-AKGGIHAVLVVFSARNRFSQEEE-A  123 (170)
Q Consensus        53 -----~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~il~v~~~~~~~~~~~~-~  123 (170)
                           +.+.......+..+....+.|+||||+.....  .+......+..++.. ....+|++++|+|++..+...+. .
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                 00000011122233455789999999987321  111112222222222 22678999999999876666664 4


Q ss_pred             HHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239          124 AVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       124 ~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +++.+...     ..|+++|+||+|++...
T Consensus       209 ll~~L~~~-----g~pvIlVlNKiDlv~~~  233 (772)
T 3zvr_A          209 IAKEVDPQ-----GQRTIGVITKLDLMDEG  233 (772)
T ss_dssp             HHHHHCTT-----CSSEEEEEECTTSSCTT
T ss_pred             HHHHHHhc-----CCCEEEEEeCcccCCcc
Confidence            55554432     25999999999998663

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.53  E-value=2.6e-13  Score=103.65  Aligned_cols=131  Identities=19%  Similarity=0.187  Sum_probs=69.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC----CceeEEEeeEEE--Ee-eCCceEEEEeCCCCCCCCCCch-
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SGVTITCEMKTT--VL-KDGQVVNVIDTPGLFDSSAGSE-   87 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~----~~~t~~~~~~~~--~~-~~~~~~~l~DtpG~~~~~~~~~-   87 (170)
                      ..-...|+|+|+||+|||||+|.|+|...+..+...    ...+.......+  .. .....+.++||+|+........ 
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            344467899999999999999999998753322110    011111111111  11 0123688999999986422111 


Q ss_pred             --HHHH----HHHHH-------HHhcc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           88 --FVGK----EIVKC-------IGLAK--GGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        88 --~~~~----~~~~~-------~~~~~--~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                        ....    .+..+       .+...  +.+|+++|++++. ..++..+..+++.+..    .  .++|+|+||+|++.
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~--v~iIlVinK~Dll~  181 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLT  181 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----T--SEEEEEEESTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----c--CcEEEEEEcccCcc
Confidence              1111    11111       11122  3456778877775 5788888666665542    2  49999999999987


Q ss_pred             C
Q 046239          152 D  152 (170)
Q Consensus       152 ~  152 (170)
                      .
T Consensus       182 ~  182 (418)
T 2qag_C          182 P  182 (418)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.53  E-value=3.9e-14  Score=106.85  Aligned_cols=101  Identities=14%  Similarity=0.209  Sum_probs=73.0

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|.+++|||||+++|+          ..+.|.......+.+ .+..+.++||||+.++       ...+.    ..
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~----~~   80 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLI----TA   80 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHH----HH
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHH----HH
Confidence            89999999999999999998          123333344444555 5778999999999864       12222    23


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceE-EEEEE-cCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM-IVVFT-GGDY  149 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-ivv~t-k~D~  149 (170)
                      ...+|++++|+| +++...+..+.+..+... +    .|. ++++| |+|+
T Consensus        81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-G----FKHGIIALTRSDST  125 (370)
T ss_dssp             HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred             HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence            356799999999 777777777666655543 2    244 88999 9998

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.29  E-value=6.2e-16  Score=107.37  Aligned_cols=119  Identities=17%  Similarity=0.021  Sum_probs=73.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .+..+|+++|.+|+|||||++++++..........   +.......... .....+.+|||||...+           ..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~   93 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT---VFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR   93 (204)
Confidence            56689999999999999999999875432211111   11111111111 02345669999998753           22


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......++|++++|+|++++.+..+.  .++..+.....   ..|+++|+||+|+...
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~  149 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  149 (204)
Confidence            333455678999999998754333332  34444444322   2599999999998754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.53  E-value=6.6e-15  Score=114.59  Aligned_cols=116  Identities=16%  Similarity=0.197  Sum_probs=80.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      +.++|+++|..++|||||+++|++.......  ..+.|.....+.+.+ .+..+.++||||+.+|....           
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~-----------   68 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMR-----------   68 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSB-----------
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHH-----------
Confidence            4578999999999999999999874332211  123333333333444 56788999999998764322           


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|++++++...+..+.+..+...   .  .|+++++||+|+...
T Consensus        69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~---~--vPiIVviNKiDl~~~  118 (501)
T 1zo1_I           69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA---Q--VPVVVAVNKIDKPEA  118 (501)
T ss_dssp             CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT---T--CCEEEEEECSSSSTT
T ss_pred             HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc---C--ceEEEEEEecccccc
Confidence            1345678999999999877666666665554432   2  489999999998764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.52  E-value=3e-13  Score=109.56  Aligned_cols=121  Identities=22%  Similarity=0.258  Sum_probs=81.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCc---cccc----c---------CCCCceeEEEeeEEEEeeCC-------ceEE
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRK---AFKA----S---------AGSSGVTITCEMKTTVLKDG-------QVVN   72 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~---~~~~----~---------~~~~~~t~~~~~~~~~~~~~-------~~~~   72 (170)
                      .....+|+++|..|+|||||++.|+...   ....    +         ....+.|.........+ .+       ..+.
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~   85 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRIN   85 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEE
Confidence            4456899999999999999999996421   1000    0         00123444444445555 44       7899


Q ss_pred             EEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        73 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ||||||+.+|.       .+    ....+..+|++++|+|+.++...+....++.+...   .  .|+++|+||+|....
T Consensus        86 liDTPG~~df~-------~~----~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~--ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVDFT-------IE----VERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY---K--VPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccchH-------HH----HHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCEEEEEeCCCcccc
Confidence            99999998642       12    22334566999999999877776666666554432   2  489999999998866


Q ss_pred             C
Q 046239          153 N  153 (170)
Q Consensus       153 ~  153 (170)
                      +
T Consensus       150 ~  150 (704)
T 2rdo_7          150 N  150 (704)
T ss_pred             c
Confidence            3

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.52  E-value=7.8e-14  Score=96.43  Aligned_cols=117  Identities=20%  Similarity=0.194  Sum_probs=70.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+++++|++|+|||||++.|++...........+  .......+.+ .+.  .+.++||||...+....          
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~--~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~----------   71 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT----------   71 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCS--CEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC----------
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh----------
Confidence            46899999999999999999998754322111111  1222233333 343  46789999986532111          


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                       ......++++++|+|+.+..+..+ ..++..+.....  ...|++++.||+|+..
T Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~  124 (199)
T 2f9l_A           72 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRH  124 (199)
T ss_dssp             -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred             -HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECccccc
Confidence             123356789999999874333222 223333333211  2258999999999864

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.51  E-value=2.1e-13  Score=101.04  Aligned_cols=118  Identities=19%  Similarity=0.083  Sum_probs=74.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCce--EEEEeCCCCCCCCCCchHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQV--VNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|.+|+|||||++.+++..........   +.......... .+..  +.++||||...+.           
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------  217 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT---VFDNYSANVMV-DGKPVNLGLWDTAGLEDYD-----------  217 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCC---SEEEEEEEEEE-TTEEEEEEEEEECCCGGGT-----------
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCc---ccceeEEEEEE-CCEEEEEEEEeCCCchhhh-----------
Confidence            34578999999999999999999865432221111   11111222223 4444  5599999987532           


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .........+|++++|+|++++.+..+.  .++..+.....   ..|+++|.||+|+...
T Consensus       218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  274 (332)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC
T ss_pred             HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc
Confidence            2223456789999999999754333332  34444544322   3599999999998654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.51  E-value=2.1e-13  Score=103.94  Aligned_cols=131  Identities=15%  Similarity=0.209  Sum_probs=71.7

Q ss_pred             CCCCcE--EEEEcCCCCCHHHHHHHhhCCccccccCC--CCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCch--
Q 046239           16 SIGERT--VVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSE--   87 (170)
Q Consensus        16 ~~~~~~--i~lvG~~gsGKSTlin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~--   87 (170)
                      ..++..  ++|+|+||+|||||+|+|+|.........  ..+.+.....+.+.. ..  ..+.++|++|+........  
T Consensus        37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~~~~~~~~  115 (427)
T 2qag_B           37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQINKEDSY  115 (427)
T ss_dssp             CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHS
T ss_pred             ecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-Cccccccchhhhhhhhhccccchhh
Confidence            345556  99999999999999999999853211111  112222211122211 11  2688999999986322110  


Q ss_pred             -H----HHHHHHHHHHhc-----------cCCccE-EEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           88 -F----VGKEIVKCIGLA-----------KGGIHA-VLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        88 -~----~~~~~~~~~~~~-----------~~~~~~-il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                       .    ...++..++...           ..++|+ ++++.|..++++..+..+++.|..    .  .|+|+|+||+|.+
T Consensus       116 ~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~----~--~~vI~Vi~KtD~L  189 (427)
T 2qag_B          116 KPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS----K--VNIIPIIAKADAI  189 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS----C--SEEEEEESCGGGS
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh----C--CCEEEEEcchhcc
Confidence             0    111222222211           112344 666777777888888777666642    2  4999999999999


Q ss_pred             CCC
Q 046239          151 EDN  153 (170)
Q Consensus       151 ~~~  153 (170)
                      ...
T Consensus       190 t~~  192 (427)
T 2qag_B          190 SKS  192 (427)
T ss_dssp             CHH
T ss_pred             chH
Confidence            763

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.50  E-value=7.9e-14  Score=110.80  Aligned_cols=116  Identities=17%  Similarity=0.194  Sum_probs=78.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-----------------CCceEEEEeCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-----------------DGQVVNVIDTPGLF   80 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~   80 (170)
                      +.++|+++|.+++|||||+++|++........  .+.|.........+.                 ....+.++||||+.
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~--ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA--GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccC--CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            35789999999999999999998754322111  112211111111110                 11258999999998


Q ss_pred             CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      +|.....           .....+|++++|+|+++++..+....+..+...   .  .|+++++||+|+..
T Consensus        82 ~F~~~~~-----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~---~--vPiIVViNKiDl~~  136 (594)
T 1g7s_A           82 AFTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY---R--TPFVVAANKIDRIH  136 (594)
T ss_dssp             CCTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGST
T ss_pred             HHHHHHH-----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc---C--CeEEEEeccccccc
Confidence            8753322           345678999999999988888887777766542   2  49999999999874

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.50  E-value=2e-13  Score=108.50  Aligned_cols=119  Identities=20%  Similarity=0.208  Sum_probs=71.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccc-------------cCCCCceeEEEeeEEEEeeC----CceEEEEeCCCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-------------SAGSSGVTITCEMKTTVLKD----GQVVNVIDTPGLFD   81 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~-------------~~~~~~~t~~~~~~~~~~~~----~~~~~l~DtpG~~~   81 (170)
                      -.+|+++|..++|||||+++|+.......             .....+.|.........|..    ...+.+|||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            46899999999999999999975221000             01123444444444444421    25788999999986


Q ss_pred             CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      |       ..+....    +..+|++++|+|+.++.+.+....+......   .  .|+++|+||+|+...+
T Consensus        84 F-------~~ev~~~----l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~~a~  139 (599)
T 3cb4_D           84 F-------SYEVSRS----LAACEGALLVVDAGQGVEAQTLANCYTAMEM---D--LEVVPVLNKIDLPAAD  139 (599)
T ss_dssp             G-------HHHHHHH----HHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC
T ss_pred             H-------HHHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEeeeccCccccc
Confidence            3       2233333    3445999999999878777766555444332   2  4899999999998764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.50  E-value=4.4e-13  Score=106.42  Aligned_cols=120  Identities=19%  Similarity=0.255  Sum_probs=74.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccc--c-----------CCCCceeEEEeeEEEEee--C--CceEEEEeCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--S-----------AGSSGVTITCEMKTTVLK--D--GQVVNVIDTPGLF   80 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--~-----------~~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~   80 (170)
                      .-.+|+++|..++|||||+++|+.......  +           ....+.|.........|.  .  ...+.++||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            346899999999999999999975211000  0           011233433333334331  1  2578899999998


Q ss_pred             CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +|       ..+..    ..+..+|++++|+|+.++.+.+....+......   .  .|+++++||+|+...+
T Consensus        85 dF-------~~ev~----r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~--ipiIvviNKiDl~~a~  141 (600)
T 2ywe_A           85 DF-------SYEVS----RALAACEGALLLIDASQGIEAQTVANFWKAVEQ---D--LVIIPVINKIDLPSAD  141 (600)
T ss_dssp             GG-------HHHHH----HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC
T ss_pred             hH-------HHHHH----HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC---C--CCEEEEEeccCccccC
Confidence            64       12222    234566999999999888887776655544432   2  4899999999998764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.47  E-value=3.7e-13  Score=102.35  Aligned_cols=91  Identities=16%  Similarity=0.114  Sum_probs=44.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--------------------eC---CceEEEEeC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--------------------KD---GQVVNVIDT   76 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~l~Dt   76 (170)
                      .+|+++|.+|+|||||+|+|++... .. ...+..|.........+                    ..   ...+.++||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~-~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDV-EI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-cc-cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            3689999999999999999998762 11 11122222221111100                    01   246899999


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC
Q 046239           77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR  116 (170)
Q Consensus        77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~  116 (170)
                      ||+..+.....    .+...+......+|++++|+|+.+.
T Consensus        79 pG~~~~a~~~~----~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEGR----GLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhhh----hHHHHHHHHHhcCCEEEEEEecccc
Confidence            99975322111    1112222356789999999999743

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.47  E-value=3.6e-13  Score=112.62  Aligned_cols=120  Identities=18%  Similarity=0.173  Sum_probs=80.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD   81 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (170)
                      ..+..+|+++|..++|||||+++|++.....              ......+.|.......+.. .+..+.++||||+.+
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH
Confidence            4456899999999999999999998741100              0011233444333334444 568899999999974


Q ss_pred             CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239           82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED  152 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~  152 (170)
                                 +..........+|++++|+|++++...+..+.+..+...   .  .| +++++||+|+...
T Consensus       372 -----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l---g--IP~IIVVINKiDLv~d  427 (1289)
T 3avx_A          372 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV---G--VPYIIVFLNKCDMVDD  427 (1289)
T ss_dssp             -----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH---T--CSCEEEEEECCTTCCC
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc---C--CCeEEEEEeecccccc
Confidence                       334444567889999999999877776766666555442   2  25 7999999999863

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.47  E-value=1e-12  Score=105.87  Aligned_cols=118  Identities=26%  Similarity=0.231  Sum_probs=81.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccc--cccC-----C---------CCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAF--KASA-----G---------SSGVTITCEMKTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~--~~~~-----~---------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (170)
                      ..+..+|+++|++|+|||||++.|++....  ..+.     .         ..+.+.........+ ....+.++||||+
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~   84 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGY   84 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCS
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCc
Confidence            356789999999999999999999843321  0000     0         112333334444444 6778999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      .++       ..+...    .+..+|++++|+|+.++........++.+...   .  .|+++++||+|..
T Consensus        85 ~~f-------~~~~~~----~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~---~--ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDF-------VGEIRG----ALEAADAALVAVSAEAGVQVGTERAWTVAERL---G--LPRMVVVTKLDKG  139 (665)
T ss_dssp             GGG-------HHHHHH----HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECGGGC
T ss_pred             cch-------HHHHHH----HHhhcCcEEEEEcCCcccchhHHHHHHHHHHc---c--CCEEEEecCCchh
Confidence            763       122333    33456999999999888888877777766653   2  4899999999987

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.47  E-value=4.1e-13  Score=99.09  Aligned_cols=121  Identities=13%  Similarity=0.058  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|.+|+||||+++.+.+...+.. ....+.|.........  ....+.+|||+|..++....  +      ....+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v~--~~v~LqIWDTAGQErf~~~~--l------~~~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHFS--TLIDLAVMELPGQLNYFEPS--Y------DSERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEEC--SSSCEEEEECCSCSSSCCCS--H------HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEEc--cEEEEEEEECCCchhccchh--h------hhhhh
Confidence            478999999999999998876543221 1112233333322221  34689999999999763100  0      11234


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +++++++++|+|+++++...-..+.+++.+........|++++.||+|+..+
T Consensus        70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~  121 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE  121 (331)
T ss_dssp             HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred             ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence            6788999999999866333222232333322111122489999999998865

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.47  E-value=9.2e-13  Score=90.56  Aligned_cols=118  Identities=20%  Similarity=0.204  Sum_probs=70.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCce--EEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQV--VNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+++++|++|+|||||++.+++.........+  .+.......+.+ .+..  +.++||+|...+....         
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t--~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~---------   95 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST--IGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAIT---------   95 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCC--CSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCC---------
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc--cceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhh---------
Confidence            3468999999999999999999987653322222  222222333444 4443  4569999987643211         


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                        ......++++++|+|..+..+... ..++..+.+..  ....+++++.||+|+.+
T Consensus        96 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~  148 (191)
T 1oix_A           96 --SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH  148 (191)
T ss_dssp             --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG
T ss_pred             --HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence              122355688999999863322211 12333333321  12358999999999764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.46  E-value=1.5e-14  Score=115.14  Aligned_cols=122  Identities=19%  Similarity=0.199  Sum_probs=61.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-----------------------------cCCCCceeEEEeeEEEEee
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA-----------------------------SAGSSGVTITCEMKTTVLK   66 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~   66 (170)
                      .++..+|+++|.+++|||||++.|++......                             .....+.|.......+.+ 
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence            34557899999999999999999964211000                             001234455555555555 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhcccccce
Q 046239           67 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-----F--SQEEEAAVHRLPTLFGKKIFDY  139 (170)
Q Consensus        67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~  139 (170)
                      .+..+.|+||||+.++...           .......+|++|+|+|++++     +  ..+....+..+... +.   .+
T Consensus       253 ~~~~i~iiDTPGh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gi---p~  317 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GI---SE  317 (592)
T ss_dssp             ------CCEEESSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SC---CC
T ss_pred             CCeEEEEEECCChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CC---Ce
Confidence            5678999999999864211           11234567999999999753     2  44555555544442 21   25


Q ss_pred             EEEEEEcCCCCCCC
Q 046239          140 MIVVFTGGDYLEDN  153 (170)
Q Consensus       140 ~ivv~tk~D~~~~~  153 (170)
                      +++|+||+|+...+
T Consensus       318 iIvviNKiDl~~~~  331 (592)
T 3mca_A          318 IVVSVNKLDLMSWS  331 (592)
T ss_dssp             EEEEEECGGGGTTC
T ss_pred             EEEEEecccccccc
Confidence            99999999988743

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.46  E-value=2.1e-13  Score=105.85  Aligned_cols=119  Identities=20%  Similarity=0.180  Sum_probs=66.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------cc---------------CCCCceeEEEeeEEEEeeC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFK--------------AS---------------AGSSGVTITCEMKTTVLKD   67 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~---------------~~~~~~t~~~~~~~~~~~~   67 (170)
                      .+..+|+++|..++|||||++.|++.....              .+               ....+.|+......+.+ .
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence            455789999999999999999986421000              00               01234455444445555 5


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccceE
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFS-------QEEEAAVHRLPTLFGKKIFDYM  140 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~  140 (170)
                      +..+.++||||+.++           ..........+|++++|+|+.++..       .+..+.+..+.. .  .. .++
T Consensus       120 ~~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~--~v-p~i  184 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-Q--GI-NHL  184 (467)
T ss_dssp             SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-T--TC-SSE
T ss_pred             CeEEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-c--CC-CEE
Confidence            788999999999764           2222345678899999999985531       223333333322 1  21 249


Q ss_pred             EEEEEcCCCCC
Q 046239          141 IVVFTGGDYLE  151 (170)
Q Consensus       141 ivv~tk~D~~~  151 (170)
                      ++++||+|+..
T Consensus       185 ivviNK~Dl~~  195 (467)
T 1r5b_A          185 VVVINKMDEPS  195 (467)
T ss_dssp             EEEEECTTSTT
T ss_pred             EEEEECccCCC
Confidence            99999999864

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.45  E-value=2.9e-13  Score=106.73  Aligned_cols=122  Identities=14%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeE----EEEe---eCCceEEEEeCCCCCCCCCCchH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMK----TTVL---KDGQVVNVIDTPGLFDSSAGSEF   88 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~---~~~~~~~l~DtpG~~~~~~~~~~   88 (170)
                      .....+|+++|.+|+|||||+|++++.........+.+.+......    ....   .....+.++||||...+..... 
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~-  116 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ-  116 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH-
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH-
Confidence            4556899999999999999999999865422111111111110000    0001   0256799999999876532211 


Q ss_pred             HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           89 VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                                .+..+++++++|+|++..  .....++..+.....   ..|+++|.||+|+....
T Consensus       117 ----------~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~  166 (535)
T 3dpu_A          117 ----------FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSY  166 (535)
T ss_dssp             ----------HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTC
T ss_pred             ----------HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCC---CCCEEEEEECCCccccc
Confidence                      123457999999998632  233455666665432   25999999999987653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.44  E-value=9.7e-13  Score=100.45  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=73.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ...++|+|+||||||||+++|++.......  ....|.......+.+.....+.++|+||+.+...........+..   
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~---  231 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR---  231 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH---
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCCccccC--cccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH---
Confidence            456899999999999999999997542221  111222222333444223788999999997531111111122222   


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       ...+++.+++++++. .-...+ ....+.+..+.......|.++|+||+|....
T Consensus       232 -~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~  284 (416)
T 1udx_A          232 -HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE  284 (416)
T ss_dssp             -HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred             -HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence             235679999999986 211112 2223333332111223689999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.44  E-value=1.5e-13  Score=94.65  Aligned_cols=121  Identities=22%  Similarity=0.174  Sum_probs=66.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcc-ccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ...+|+++|.+|+|||||+|.+++... ........+.+.  ......+ .+.  .+.++||+|.....   .     . 
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~~Dt~~~~~~~---~-----~-   72 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDT--YERTLMV-DGESATIILLDMWENKGEN---E-----W-   72 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTE--EEEEEEE-TTEEEEEEEECCCCC-------C-----T-
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeE--EEEEEEE-CCeEEEEEEEEeccCcchh---h-----h-
Confidence            347899999999999999999996322 111111111111  1122233 333  45789999976410   0     0 


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       ....+...++++++|+++++.-+... ..++..+.+.... ...|+++|.||+|+...
T Consensus        73 -~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~  129 (192)
T 2cjw_A           73 -LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRX  129 (192)
T ss_dssp             -TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGG
T ss_pred             -HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhcc
Confidence             01122344689999999974433222 2333344443211 12589999999998643

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.39  E-value=4e-12  Score=93.45  Aligned_cols=130  Identities=19%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC-ccccccCCC----CceeEEEeeEEEEe---eCCceEEEEeCCCCCCCCCC---
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR-KAFKASAGS----SGVTITCEMKTTVL---KDGQVVNVIDTPGLFDSSAG---   85 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~-~~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~---   85 (170)
                      .-...|+++|++|+|||||+|.|+|. ..+..+...    ...+.......+..   .....+.++||+|+......   
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            44578999999999999999999986 333333110    00111111111111   01346899999999532110   


Q ss_pred             chHHHH----HHHHHHHh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           86 SEFVGK----EIVKCIGL---------AKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        86 ~~~~~~----~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      -.....    .+..++..         ...++++++|++++. ..++..+..+++.+.    ..  .++++|+||+|...
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~----~~--~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT----TT--SCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH----hc--CCEEEEEEeCCCCC
Confidence            011111    11122211         123456677777764 358777754443332    22  38999999999886


Q ss_pred             C
Q 046239          152 D  152 (170)
Q Consensus       152 ~  152 (170)
                      .
T Consensus       170 ~  170 (301)
T 2qnr_A          170 L  170 (301)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.39  E-value=9.1e-13  Score=108.62  Aligned_cols=118  Identities=21%  Similarity=0.282  Sum_probs=77.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc--------------CCCCceeEEEeeEEEEee---------------C
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTITCEMKTTVLK---------------D   67 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~   67 (170)
                      ....+|+++|..|+|||||+++|++.......              ....+.|.........|.               .
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            34578999999999999999999864211000              011122333222333331               1


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG  147 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (170)
                      +..+.||||||+.+|..       +..    .++..+|++++|+|+.++.+.++...+..+...   .  .|+++|+||+
T Consensus        97 ~~~i~liDTPG~~df~~-------~~~----~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~--~p~ilviNK~  160 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSS-------EVT----AALRVTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKV  160 (842)
T ss_dssp             EEEEEEECCCCCCSSCH-------HHH----HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECH
T ss_pred             CceEEEEECcCchhhHH-------HHH----HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCeEEEEECC
Confidence            45789999999998631       222    234567999999999988888876665544332   2  4899999999


Q ss_pred             CCC
Q 046239          148 DYL  150 (170)
Q Consensus       148 D~~  150 (170)
                      |..
T Consensus       161 D~~  163 (842)
T 1n0u_A          161 DRA  163 (842)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            976

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.38  E-value=1.8e-11  Score=99.35  Aligned_cols=121  Identities=26%  Similarity=0.288  Sum_probs=83.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccc-------cc---------cCCCCceeEEEeeEEEEee------CCceEEEE
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAF-------KA---------SAGSSGVTITCEMKTTVLK------DGQVVNVI   74 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~-------~~---------~~~~~~~t~~~~~~~~~~~------~~~~~~l~   74 (170)
                      .+-++|+|+|..++|||||..+|+-....       ..         .....+.|+........|.      ++..+.|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            45579999999999999999887522100       00         1223456666665666552      14579999


Q ss_pred             eCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           75 DTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ||||+.+|.       .+....++.+    |.+++|+|+.++...+....++...+.   +  -|.++++||+|....+
T Consensus        91 DTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~--lp~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           91 DTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---G--VPRIVYVNKMDRQGAN  153 (709)
T ss_dssp             CCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---T--CCEEEEEECSSSTTCC
T ss_pred             eCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---C--CCeEEEEccccccCcc
Confidence            999999863       3444444444    999999999999999998888887765   2  3899999999998763

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.35  E-value=1.5e-12  Score=104.46  Aligned_cols=118  Identities=20%  Similarity=0.258  Sum_probs=86.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhh---CCccccc----cC---------CCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSIL---GRKAFKA----SA---------GSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS   83 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~---~~~~~~~----~~---------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (170)
                      ++|+|+|..++|||||..+|+   |......    +.         ...+.|+......+.| ++..+.|+||||+.+|.
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSSTH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHHH
Confidence            689999999999999998875   3221111    10         0124555555556666 78889999999999852


Q ss_pred             CCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239           84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE  154 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (170)
                             .+..    +.+.-+|.+++|+|+.++...+....++...+.   +  -|.++++||+|....+.
T Consensus        82 -------~Ev~----raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~--lp~i~~INKmDr~~a~~  136 (638)
T 3j25_A           82 -------AEVY----RSLSVLDGAILLISAKDGVQAQTRILFHALRKM---G--IPTIFFINKIDQNGIDL  136 (638)
T ss_dssp             -------HHHH----HHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---T--CSCEECCEECCSSSCCS
T ss_pred             -------HHHH----HHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCeEEEEeccccccCCH
Confidence                   2333    344566999999999999999998888887775   2  38899999999887643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.33  E-value=7.5e-14  Score=105.28  Aligned_cols=125  Identities=18%  Similarity=0.228  Sum_probs=70.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCcccc-----ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFK-----ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      +.+++++|.+|+|||||+|+|++.....     .....++.|.....  +.+  ...+.++||||+.+.....+....+.
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence            4689999999999999999999863211     11122334433322  322  33489999999987643333233333


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +.... ....++..++++++...........++.+..   .+  .|+++++||+|.+...
T Consensus       236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~---~~--~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSG---GR--RAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES---SS--EEEEEEECTTSCEEEE
T ss_pred             HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEecC---CC--ceEEEEecCccccccc
Confidence            32221 2456778888888742111111111222211   12  4899999999998663

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.32  E-value=6.1e-14  Score=105.81  Aligned_cols=134  Identities=18%  Similarity=0.219  Sum_probs=76.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCc-----cccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRK-----AFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      +.+++++|.+|+|||||+|+|++..     .... ...++.|.....  +.+  ...+.++||||+.......+....+.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence            4679999999999999999999862     1111 122334443332  222  34589999999987643333222232


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh-hhHHHHhhh
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE-KTLEDYLGH  163 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-~~~~~~~~~  163 (170)
                      +..+. ....++.+++++++...........++.+.   ..+  .|+++++||.|.+...+ +...+++++
T Consensus       237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~~~~~~~~~~~~~  301 (369)
T 3ec1_A          237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHRTKLEKADSLYAN  301 (369)
T ss_dssp             HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEEEEGGGHHHHHHH
T ss_pred             HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCcccccccHHHHHHHHHH
Confidence            22221 236678899999884211111111122121   112  48999999999875433 344444444

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.30  E-value=2.2e-11  Score=97.35  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=69.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccc-cccCCCCceeEE-E-e------e------------------------------
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTIT-C-E------M------------------------------   60 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~-~~~~~~~~~t~~-~-~------~------------------------------   60 (170)
                      +.++|+|++|||||||+++|+|...+ ..|.....+... . .      .                              
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~  125 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI  125 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred             CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence            34999999999999999999998755 344332221110 0 0      0                              


Q ss_pred             -------------EEEEeeCCceEEEEeCCCCCCC--CCCchHHHHHHHHHHHhccCCc-cEEEEEEeCCCCCCHHHHHH
Q 046239           61 -------------KTTVLKDGQVVNVIDTPGLFDS--SAGSEFVGKEIVKCIGLAKGGI-HAVLVVFSARNRFSQEEEAA  124 (170)
Q Consensus        61 -------------~~~~~~~~~~~~l~DtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~il~v~~~~~~~~~~~~~~  124 (170)
                                   ..........+.++|.||+...  .........++...+..+.... .+++++.+.+..+.  ....
T Consensus       126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~  203 (608)
T 3szr_A          126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEA  203 (608)
T ss_dssp             HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHH
T ss_pred             cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHH
Confidence                         0011112346899999998752  2223334556666666644443 45566666542322  2223


Q ss_pred             HHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          125 VHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ++.+...-..+  .++++|+||+|.+..
T Consensus       204 l~la~~v~~~g--~rtI~VlTK~Dlv~~  229 (608)
T 3szr_A          204 LSMAQEVDPEG--DRTIGILTKPDLVDK  229 (608)
T ss_dssp             HHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred             HHHHHHHhhcC--CceEEEecchhhcCc
Confidence            44444432222  489999999999866

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=89.09  Aligned_cols=49  Identities=16%  Similarity=0.088  Sum_probs=30.8

Q ss_pred             CccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          103 GIHAVLVVFSARNR--FSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       103 ~~~~il~v~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ++|++++|+|++++  .+... ..++..+.+... ....|+++|.||+|+...
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~  213 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVE  213 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCH
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEccccccc
Confidence            58999999999754  44443 234444443311 112599999999998654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.23  E-value=9.7e-12  Score=93.18  Aligned_cols=91  Identities=18%  Similarity=0.131  Sum_probs=54.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC----------------CceEEEEeCCCCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD----------------GQVVNVIDTPGLFDS   82 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~   82 (170)
                      +.+|+++|.+|+|||||+|+|++......  ..+.+|.......+.+..                ...+.++||||+..+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~--~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAA--NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            36899999999999999999998652111  111223222222233311                146899999999864


Q ss_pred             CCCchHHHHHHHHHHHhccCCccEEEEEEeCCC
Q 046239           83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN  115 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  115 (170)
                      .......+.+++..    ...+|++++|+|+.+
T Consensus        80 a~~~~gl~~~fl~~----ir~ad~il~VvD~~~  108 (363)
T 1jal_A           80 ASKGEGLGNKFLAN----IRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHHGGGTCCHHHH----HHTCSEEEEEEECSC
T ss_pred             ccccchHHHHHHHH----HHhcCeEEEEEecCC
Confidence            21111122233332    356799999999864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.22  E-value=1.7e-11  Score=91.82  Aligned_cols=26  Identities=27%  Similarity=0.033  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ....+|+|+|++|||||||+|.|++.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            45789999999999999999999974

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.22  E-value=2.6e-11  Score=91.74  Aligned_cols=95  Identities=17%  Similarity=0.147  Sum_probs=49.6

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC----------------CceEEEEeCC
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD----------------GQVVNVIDTP   77 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dtp   77 (170)
                      .....+.+++++|++|+|||||+|+|++.....  ...+.+|.......+.+..                ...+.++|||
T Consensus        17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~--~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtp   94 (396)
T 2ohf_A           17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASA--ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIA   94 (396)
T ss_dssp             CCSSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECC
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECC
Confidence            344567899999999999999999999875311  1122233333333332211                2358999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239           78 GLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR  114 (170)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (170)
                      |+..+.......+..+..    ....+|++++|+|+.
T Consensus        95 Gl~~~as~~~glg~~~l~----~ir~aD~Il~VvD~~  127 (396)
T 2ohf_A           95 GLVKGAHNGQGLGNAFLS----HISACDGIFHLTRAF  127 (396)
T ss_dssp             C-----------CCHHHH----HHHTSSSEEEEEEC-
T ss_pred             CcccccchhhHHHHHHHH----HHHhcCeEEEEEecC
Confidence            998754322222223333    345679999999985

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.21  E-value=4.1e-11  Score=90.76  Aligned_cols=96  Identities=18%  Similarity=0.118  Sum_probs=61.1

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC-----------------ceEEEEe
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG-----------------QVVNVID   75 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~D   75 (170)
                      .....++.+++++|+||+|||||+|+|+|...... ...+.+|.......+.+ .+                 ..+.++|
T Consensus        14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD   91 (392)
T 1ni3_A           14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD   91 (392)
T ss_dssp             CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHCCCcccc-cCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence            34556678999999999999999999999653111 11222333333333333 22                 3578999


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239           76 TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR  114 (170)
Q Consensus        76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (170)
                      +||+.......+.....+...    ...+|++++|+++.
T Consensus        92 ~pGl~~~~s~~e~L~~~fl~~----ir~~d~il~Vvd~~  126 (392)
T 1ni3_A           92 IAGLTKGASTGVGLGNAFLSH----VRAVDAIYQVVRAF  126 (392)
T ss_dssp             TGGGCCCCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred             ccccccCCcHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence            999986544333333344433    34679999999975

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.18  E-value=2.7e-10  Score=86.86  Aligned_cols=119  Identities=21%  Similarity=0.183  Sum_probs=72.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEE-EeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTIT-CEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...++++|+||+|||||+|+|+|...+..+....+.... .....++......+.++|+||+.....    ...+++...
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~----~~~~~L~~~  144 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNF----PPDTYLEKM  144 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSC----CHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHH----HHHHHHHHc
Confidence            348999999999999999999998776666443332211 111222221224689999999874321    122333222


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                      .  ....+..++ ++.. ........+...+...   +  .|+++|.||.|.+
T Consensus       145 ~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~---~--~p~~lV~tkpdll  188 (413)
T 1tq4_A          145 K--FYEYDFFII-ISAT-RFKKNDIDIAKAISMM---K--KEFYFVRTKVDSD  188 (413)
T ss_dssp             T--GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT---T--CEEEEEECCHHHH
T ss_pred             C--CCccCCeEE-eCCC-CccHHHHHHHHHHHhc---C--CCeEEEEecCccc
Confidence            2  222344444 6665 3566666666666653   2  4999999999975

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.12  E-value=1.3e-11  Score=92.11  Aligned_cols=27  Identities=26%  Similarity=0.182  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..++.+++++|+||||||||+|.|+|.
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            466789999999999999999999864

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.12  E-value=2.5e-10  Score=90.44  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccc-cccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCC-CchHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSA-GSEFVGKE   92 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~-~~~~~~~~   92 (170)
                      .+..+|+|+|++|+|||||+|.|+|.... ..+..+.+.|.....+....  ..+..+.++||||+.+... ... ....
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~-~~~~  114 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQ-NDSW  114 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCT-THHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchh-HHHH
Confidence            34578999999999999999999997642 22222233443333322211  1467899999999987433 111 1112


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPT  130 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~  130 (170)
                      +....... .  +  ++|+++...++..+...+..+.+
T Consensus       115 ~fala~ll-s--s--~lv~n~~~~i~~~dl~~l~~v~e  147 (592)
T 1f5n_A          115 IFALAVLL-S--S--TFVYNSIGTINQQAMDQLYYVTE  147 (592)
T ss_dssp             HHHHHHHH-C--S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred             HHHHHHHh-c--C--eEEEECCCCccHHHHHHHHHHHH
Confidence            21111111 1  2  34455555788887666555444

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.12  E-value=1.2e-10  Score=87.56  Aligned_cols=90  Identities=22%  Similarity=0.230  Sum_probs=55.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--------------------CCceEEEEeCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--------------------DGQVVNVIDTPGL   79 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~l~DtpG~   79 (170)
                      .+++++|.+|+|||||+|+|++......  ..+..|.........++                    ....+.++||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~--~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAA--NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCS--SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCccc--CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            4689999999999999999998642111  11111221111111110                    1346899999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN  115 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  115 (170)
                      ..+....+..+.++...+    ..+|++++|+|+.+
T Consensus        80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence            876543333444554443    45699999999863

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.12  E-value=1.9e-10  Score=85.94  Aligned_cols=27  Identities=19%  Similarity=0.054  Sum_probs=23.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..+..+++++|++|+|||||+|.|++.
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.09  E-value=1.5e-09  Score=84.76  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=69.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh------CCccccccC-C-CCce-------eEE--EeeEE-----------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL------GRKAFKASA-G-SSGV-------TIT--CEMKT-----------------   62 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~------~~~~~~~~~-~-~~~~-------t~~--~~~~~-----------------   62 (170)
                      .+..+|+++|++|+||||+++.|+      |....-... . .++.       ...  .....                 
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            456789999999999999999998      543211100 0 0000       000  00000                 


Q ss_pred             EEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EE
Q 046239           63 TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MI  141 (170)
Q Consensus        63 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~i  141 (170)
                      ..+ .+..+.|+||||....   ......++......  ..+|.+++|+|+....+  ....++.+.+.      .| ..
T Consensus       179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~g  244 (504)
T 2j37_W          179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVAS  244 (504)
T ss_dssp             HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCC
T ss_pred             HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceE
Confidence            001 4567999999999852   12233344333332  26799999999975543  23333333332      26 48


Q ss_pred             EEEEcCCCCCC
Q 046239          142 VVFTGGDYLED  152 (170)
Q Consensus       142 vv~tk~D~~~~  152 (170)
                      +|+||+|....
T Consensus       245 vVlNK~D~~~~  255 (504)
T 2j37_W          245 VIVTKLDGHAK  255 (504)
T ss_dssp             EEEECTTSCCC
T ss_pred             EEEeCCccccc
Confidence            99999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.07  E-value=2.8e-10  Score=85.43  Aligned_cols=25  Identities=24%  Similarity=0.170  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ....+|+++|++|+|||||++.|+.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.06  E-value=1e-09  Score=78.71  Aligned_cols=31  Identities=19%  Similarity=0.326  Sum_probs=24.8

Q ss_pred             CCCCCCCCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           10 WKPTSPSIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      +..+........+++.|+.|+||||+++.|+
T Consensus         5 ~~~~~~~~~~~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A            5 HHHHHHGMASMIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             CCCCCTTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cccccCCcceEEEEEeCCCCCCHHHHHHHHH
Confidence            3344445566788999999999999999998

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.05  E-value=8.7e-10  Score=82.53  Aligned_cols=33  Identities=15%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G   59 (359)
T 3fvq_A           27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG   59 (359)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence            456789999999999999999999998876654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.05  E-value=5.8e-10  Score=81.16  Aligned_cols=66  Identities=21%  Similarity=0.338  Sum_probs=41.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE   87 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   87 (170)
                      ....+++++|.+|+|||||+|+|+|......+. .++.|...+.  +..  +..+.++||||+..+.....
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~~--~~~~~l~DtpG~~~~~~~~~  183 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQW--VKV--GKELELLDTPGILWPKFEDE  183 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EEE--TTTEEEEECCCCCCSCCCCH
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEE--EEe--CCCEEEEECcCcCCCCCCCH
Confidence            345789999999999999999999876543332 2344444432  222  45789999999987654443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.03  E-value=5e-10  Score=80.40  Aligned_cols=33  Identities=21%  Similarity=0.125  Sum_probs=28.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G   70 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG   70 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            457789999999999999999999998765544

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.03  E-value=2.2e-11  Score=89.44  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G  109 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSG  109 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence            457789999999999999999999998765544

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.01  E-value=8.9e-10  Score=82.59  Aligned_cols=34  Identities=15%  Similarity=0.080  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G   83 (366)
T 3tui_C           50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG   83 (366)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence            3467789999999999999999999998876544

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.01  E-value=2.6e-10  Score=82.34  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G   66 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG   66 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            456789999999999999999999998766554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.00  E-value=9.2e-10  Score=82.97  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G   58 (381)
T 3rlf_A           26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG   58 (381)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence            456789999999999999999999998876554

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.00  E-value=5.1e-10  Score=79.41  Aligned_cols=34  Identities=24%  Similarity=0.162  Sum_probs=29.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+||||||||||++.|+|...+..|
T Consensus        27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   60 (235)
T 3tif_A           27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG   60 (235)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence            3567789999999999999999999998765544

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.00  E-value=2.6e-09  Score=76.57  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=27.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA   47 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~   47 (170)
                      ..++..++|+|+||||||||++.|+|...+..
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~   59 (253)
T 2nq2_C           28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ   59 (253)
T ss_dssp             EETTCEEEEECCSSSSHHHHHHHHTTSSCCSE
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            45678999999999999999999999876544

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.99  E-value=1.3e-10  Score=83.11  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=28.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   64 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG   64 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            456789999999999999999999998765544

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.98  E-value=3.6e-09  Score=77.74  Aligned_cols=129  Identities=15%  Similarity=0.035  Sum_probs=70.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC---cee------------EEEeeEEEE-----------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVT------------ITCEMKTTV-----------------   64 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~---~~t------------~~~~~~~~~-----------------   64 (170)
                      .++..++++|+|||||||+++.|++...+..+....   ...            .......+.                 
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            467899999999999999999998765433221000   000            000000000                 


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCc-hHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 046239           65 -LKDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIV  142 (170)
Q Consensus        65 -~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv  142 (170)
                       ...+....++||+|........ ...........+.....|+.+++++|+..+.  .....+..+.+..     ...++
T Consensus       180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~-----~~t~i  252 (304)
T 1rj9_A          180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV-----GLTGV  252 (304)
T ss_dssp             HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH-----CCSEE
T ss_pred             HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHc-----CCcEE
Confidence             0012346799999986532111 1112222233334566788888899976332  2222333333322     36889


Q ss_pred             EEEcCCCCCC
Q 046239          143 VFTGGDYLED  152 (170)
Q Consensus       143 v~tk~D~~~~  152 (170)
                      ++||.|....
T Consensus       253 ivTh~d~~a~  262 (304)
T 1rj9_A          253 IVTKLDGTAK  262 (304)
T ss_dssp             EEECTTSSCC
T ss_pred             EEECCccccc
Confidence            9999997643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.98  E-value=2.3e-09  Score=80.33  Aligned_cols=33  Identities=27%  Similarity=0.250  Sum_probs=28.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (359)
T 2yyz_A           26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG   58 (359)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence            457789999999999999999999998776554

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.97  E-value=1.1e-08  Score=72.00  Aligned_cols=33  Identities=21%  Similarity=0.116  Sum_probs=28.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G   59 (224)
T 2pcj_A           27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEG   59 (224)
T ss_dssp             EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            456789999999999999999999998765544

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.97  E-value=4.4e-09  Score=79.25  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (372)
T 1g29_1           26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG   58 (372)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence            456789999999999999999999999876554

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.96  E-value=2.1e-09  Score=80.50  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   60 (353)
T 1oxx_K           28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTG   60 (353)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            456789999999999999999999998876654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.96  E-value=7.8e-10  Score=80.14  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=28.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G   63 (275)
T 3gfo_A           31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG   63 (275)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            456789999999999999999999998765544

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.95  E-value=1.4e-09  Score=77.37  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=28.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   61 (240)
T 1ji0_A           29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            456789999999999999999999998765544

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.95  E-value=3.2e-10  Score=82.07  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G   74 (271)
T 2ixe_A           41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG   74 (271)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence            3567789999999999999999999998765544

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.94  E-value=2.9e-09  Score=79.89  Aligned_cols=33  Identities=27%  Similarity=0.277  Sum_probs=28.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   58 (362)
T 2it1_A           26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG   58 (362)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCCCCce
Confidence            457789999999999999999999998776554

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.94  E-value=1.5e-09  Score=78.24  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=28.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G   79 (263)
T 2olj_A           47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG   79 (263)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence            457789999999999999999999998765544

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.94  E-value=2.6e-09  Score=79.90  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   70 (355)
T 1z47_A           38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKG   70 (355)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            456789999999999999999999998876554

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.93  E-value=1e-09  Score=78.09  Aligned_cols=31  Identities=35%  Similarity=0.259  Sum_probs=26.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      .+ ..++++|+||||||||++.|+|...+..|
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   53 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            45 78999999999999999999998765544

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.93  E-value=3.4e-09  Score=74.83  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=27.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   63 (229)
T 2pze_A           31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG   63 (229)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            356789999999999999999999998765443

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.92  E-value=3.1e-09  Score=79.99  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=28.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   66 (372)
T 1v43_A           34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG   66 (372)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence            457789999999999999999999998876554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.91  E-value=1.8e-09  Score=85.99  Aligned_cols=34  Identities=29%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ..++..++++|+||||||||++.|+|...+..|.
T Consensus       366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~  399 (582)
T 3b5x_A          366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS  399 (582)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence            4577899999999999999999999988766553

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.90  E-value=1.4e-08  Score=72.14  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=28.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG   60 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            457789999999999999999999998765544

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.87  E-value=8.4e-09  Score=72.06  Aligned_cols=33  Identities=18%  Similarity=0.046  Sum_probs=28.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G   64 (214)
T 1sgw_A           32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG   64 (214)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            356788999999999999999999998765544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.87  E-value=5.5e-09  Score=80.99  Aligned_cols=128  Identities=13%  Similarity=0.101  Sum_probs=70.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC---ceeE------------EEeeEEE-E--------------
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVTI------------TCEMKTT-V--------------   64 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~---~~t~------------~~~~~~~-~--------------   64 (170)
                      ...++.+++|+|+||||||||++.|+|......+....   ....            ...+..+ .              
T Consensus       289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l  368 (503)
T 2yhs_A          289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI  368 (503)
T ss_dssp             CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred             eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence            45678899999999999999999998865433321110   0000            0000000 0              


Q ss_pred             ---eeCCceEEEEeCCCCCCCCCCchHHHHHHHH---HHHhc-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc
Q 046239           65 ---LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK---CIGLA-KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF  137 (170)
Q Consensus        65 ---~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~  137 (170)
                         ...+..+.++||+|....   ......++.+   .++.. ...++-+++++|+..+  ......++.+.+.+     
T Consensus       369 ~~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~-----  438 (503)
T 2yhs_A          369 QAAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-----  438 (503)
T ss_dssp             HHHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHT-----
T ss_pred             HHHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhc-----
Confidence               012345889999999752   1222233332   22222 2346788889997533  22223333343332     


Q ss_pred             ceEEEEEEcCCCCCC
Q 046239          138 DYMIVVFTGGDYLED  152 (170)
Q Consensus       138 ~~~ivv~tk~D~~~~  152 (170)
                      ....+|+||.|....
T Consensus       439 ~itgvIlTKLD~tak  453 (503)
T 2yhs_A          439 GLTGITLTKLDGTAK  453 (503)
T ss_dssp             CCSEEEEECGGGCSC
T ss_pred             CCCEEEEEcCCCccc
Confidence            356789999997433

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.86  E-value=1.1e-09  Score=78.13  Aligned_cols=34  Identities=18%  Similarity=0.135  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (243)
T 1mv5_A           24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG   57 (243)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3567889999999999999999999998766554

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.86  E-value=3.9e-09  Score=78.84  Aligned_cols=33  Identities=27%  Similarity=0.270  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+||||||||||++.|+|...+..|
T Consensus        23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G   55 (348)
T 3d31_A           23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSG   55 (348)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred             EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence            456789999999999999999999998876554

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.86  E-value=6.5e-10  Score=88.76  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++++|+||||||||++.|+|...+..|
T Consensus       378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  410 (598)
T 3qf4_B          378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG  410 (598)
T ss_dssp             CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence            567889999999999999999999998876554

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.86  E-value=2.7e-09  Score=76.76  Aligned_cols=31  Identities=26%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAF   45 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~   45 (170)
                      ...++..++|+|+||||||||++.|+|...+
T Consensus        42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   72 (260)
T 2ghi_A           42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYDA   72 (260)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            3457789999999999999999999998653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.85  E-value=2.5e-09  Score=76.99  Aligned_cols=60  Identities=27%  Similarity=0.396  Sum_probs=39.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      .+++++|.+|+|||||+|+|++......+. .++.|...+  .+.  -...+.++||||+..+..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~--~~~--~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQ--WFS--LENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSC--EEE--CTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceE--EEE--eCCCEEEEECCCcccCcC
Confidence            589999999999999999999876543322 223443332  222  245789999999997654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.85  E-value=5.1e-09  Score=77.70  Aligned_cols=124  Identities=17%  Similarity=0.091  Sum_probs=69.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeE---------------EEeeEEEE-----------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTI---------------TCEMKTTV-----------------   64 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~---------------~~~~~~~~-----------------   64 (170)
                      .++..++++|+|||||||+++.|++...+..+........               ......+.                 
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            5678999999999999999999998654433311100000               00000000                 


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 046239           65 -LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVV  143 (170)
Q Consensus        65 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (170)
                       ...+..+.++||+|.....   .....++....+..  .+|-.++++|+...   .  ..++.+..+...  ....+++
T Consensus       207 ~~~~~~d~vliDtaG~~~~~---~~l~~eL~~i~ral--~~de~llvLDa~t~---~--~~~~~~~~~~~~--~~it~ii  274 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETN---RNLMDEMKKIARVT--KPNLVIFVGDALAG---N--AIVEQARQFNEA--VKIDGII  274 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTT---TCHHHHHHHHHHHH--CCSEEEEEEEGGGT---T--HHHHHHHHHHHH--SCCCEEE
T ss_pred             HHhccchhhHHhhccchhHH---HHHHHHHHHHHHHh--cCCCCEEEEecHHH---H--HHHHHHHHHHHh--cCCCEEE
Confidence             0013456789999986532   22334444433333  36778888887533   1  233333332211  1367899


Q ss_pred             EEcCCCCCC
Q 046239          144 FTGGDYLED  152 (170)
Q Consensus       144 ~tk~D~~~~  152 (170)
                      +||.|....
T Consensus       275 lTKlD~~a~  283 (328)
T 3e70_C          275 LTKLDADAR  283 (328)
T ss_dssp             EECGGGCSC
T ss_pred             EeCcCCccc
Confidence            999997443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.84  E-value=2.1e-08  Score=73.61  Aligned_cols=130  Identities=12%  Similarity=0.096  Sum_probs=70.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC---Ccee----------------EEEeeEEEE--e---------
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---SGVT----------------ITCEMKTTV--L---------   65 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~---~~~t----------------~~~~~~~~~--~---------   65 (170)
                      ..++..++++|+|||||||+++.|+|...+..+...   ....                .........  .         
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l  176 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV  176 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence            556789999999999999999999986544332110   0000                000000000  0         


Q ss_pred             ----eCCceEEEEeCCCCCCCCCCc-hHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceE
Q 046239           66 ----KDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM  140 (170)
Q Consensus        66 ----~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  140 (170)
                          ..+....++|+.|........ .+...+....++.....++-+++++|+..+.+...  .+..+.+..     ...
T Consensus       177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~-----g~t  249 (302)
T 3b9q_A          177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-----GIT  249 (302)
T ss_dssp             HHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-----CCC
T ss_pred             HHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhc-----CCC
Confidence                012346789999997532111 11122233333345567887777777653443322  223332221     357


Q ss_pred             EEEEEcCCCCCC
Q 046239          141 IVVFTGGDYLED  152 (170)
Q Consensus       141 ivv~tk~D~~~~  152 (170)
                      ++++||.|....
T Consensus       250 ~iiiThlD~~~~  261 (302)
T 3b9q_A          250 GLILTKLDGSAR  261 (302)
T ss_dssp             EEEEECCSSCSC
T ss_pred             EEEEeCCCCCCc
Confidence            889999987644

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.84  E-value=3.1e-08  Score=74.25  Aligned_cols=131  Identities=13%  Similarity=0.101  Sum_probs=71.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC---ceeE------------EEeeEEEE-e-------------
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVTI------------TCEMKTTV-L-------------   65 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~---~~t~------------~~~~~~~~-~-------------   65 (170)
                      ...++.+++++|+|||||||+++.|+|...+..+....   ....            ......+. .             
T Consensus       153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~  232 (359)
T 2og2_A          153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA  232 (359)
T ss_dssp             CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHH
T ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHH
Confidence            34577899999999999999999999865433321100   0000            00000000 0             


Q ss_pred             -----eCCceEEEEeCCCCCCCCCCc-hHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 046239           66 -----KDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY  139 (170)
Q Consensus        66 -----~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (170)
                           ..+....++||.|........ .+...+.....+.....++-+++++|+..+.+...  .+..+.+..     ..
T Consensus       233 l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~-----g~  305 (359)
T 2og2_A          233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-----GI  305 (359)
T ss_dssp             HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-----CC
T ss_pred             HHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhc-----CC
Confidence                 012346789999997532111 11122333333445677887777888653433322  222232221     36


Q ss_pred             EEEEEEcCCCCCC
Q 046239          140 MIVVFTGGDYLED  152 (170)
Q Consensus       140 ~ivv~tk~D~~~~  152 (170)
                      .++++||.|....
T Consensus       306 t~iiiThlD~~~~  318 (359)
T 2og2_A          306 TGLILTKLDGSAR  318 (359)
T ss_dssp             CEEEEESCTTCSC
T ss_pred             eEEEEecCccccc
Confidence            7899999987644

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.83  E-value=1.5e-09  Score=77.62  Aligned_cols=31  Identities=26%  Similarity=0.281  Sum_probs=27.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK   46 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~   46 (170)
                      ..++..++|+|+||||||||++.|+|...+.
T Consensus        23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~   53 (249)
T 2qi9_C           23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK   53 (249)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            3567899999999999999999999987655

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.83  E-value=1.6e-09  Score=86.15  Aligned_cols=33  Identities=27%  Similarity=0.229  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++++||||||||||++.|+|...+..|
T Consensus       364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G  396 (578)
T 4a82_A          364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG  396 (578)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            457789999999999999999999998776554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.83  E-value=6.5e-10  Score=88.56  Aligned_cols=33  Identities=30%  Similarity=0.225  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++++|+||||||||++.|+|...+..|
T Consensus       366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G  398 (587)
T 3qf4_A          366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG  398 (587)
T ss_dssp             ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence            456789999999999999999999998776554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.79  E-value=2.3e-08  Score=76.73  Aligned_cols=123  Identities=13%  Similarity=0.100  Sum_probs=68.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC------Ccccccc-CCC-C-------------ceeEEEeeEEEE----------e-
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG------RKAFKAS-AGS-S-------------GVTITCEMKTTV----------L-   65 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~------~~~~~~~-~~~-~-------------~~t~~~~~~~~~----------~-   65 (170)
                      ++.+|+++|++|+||||++..|+.      ....-.. ... .             +..........+          . 
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            568999999999999999998873      2210000 000 0             000000000000          0 


Q ss_pred             -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239           66 -KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF  144 (170)
Q Consensus        66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (170)
                       ..+..+.|+||||....   ......++......  ..+|.+++|+|+..+.  ........+.+.+     ....+|+
T Consensus       179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~--~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~-----~i~gVIl  246 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNV--IHPHEVILVIDGTIGQ--QAYNQALAFKEAT-----PIGSIIV  246 (443)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGGG--GHHHHHHHHHHSC-----TTEEEEE
T ss_pred             HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHh--hcCceEEEEEeCCCch--hHHHHHHHHHhhC-----CCeEEEE
Confidence             02367899999998752   23344444444333  2578999999986432  2223333333322     4678999


Q ss_pred             EcCCCCCC
Q 046239          145 TGGDYLED  152 (170)
Q Consensus       145 tk~D~~~~  152 (170)
                      ||+|....
T Consensus       247 TKlD~~~~  254 (443)
T 3dm5_A          247 TKLDGSAK  254 (443)
T ss_dssp             ECCSSCSS
T ss_pred             ECCCCccc
Confidence            99998755

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.79  E-value=5.3e-09  Score=75.34  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=26.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      +..++|+|+||||||||++.|+|.. +..|
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G   58 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL-PYSG   58 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence            7899999999999999999999987 6554

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.78  E-value=2.3e-08  Score=73.00  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=28.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G   93 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG   93 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            456789999999999999999999998765544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.78  E-value=6.8e-08  Score=69.50  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G   61 (262)
T 1b0u_A           28 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG   61 (262)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            3457789999999999999999999998765544

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.75  E-value=1.8e-09  Score=85.96  Aligned_cols=33  Identities=30%  Similarity=0.399  Sum_probs=28.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++++|+||||||||++.|+|...+..|
T Consensus       366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G  398 (582)
T 3b60_A          366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEG  398 (582)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence            356789999999999999999999998765554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.75  E-value=2.7e-09  Score=78.35  Aligned_cols=62  Identities=27%  Similarity=0.276  Sum_probs=36.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC------ceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTITCEMKTTVLKDGQVVNVIDTPGLFDSS   83 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (170)
                      .++.+++++|+||+|||||+|+|+|...+..+....      ..|....  .... .  ..+++||||+..+.
T Consensus       171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~-~--~g~v~dtpg~~~~~  238 (307)
T 1t9h_A          171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT-S--GGLVADTPGFSSLE  238 (307)
T ss_dssp             GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE-T--TEEEESSCSCSSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc-C--CEEEecCCCccccc
Confidence            356799999999999999999999987655553331      2222111  1222 1  56899999998753

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.75  E-value=2.2e-08  Score=76.77  Aligned_cols=125  Identities=18%  Similarity=0.119  Sum_probs=69.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc-------CCC--------------CceeEEEe-------------eEE
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS-------AGS--------------SGVTITCE-------------MKT   62 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-------~~~--------------~~~t~~~~-------------~~~   62 (170)
                      .++.+|+++|++|+||||++..|+........       ...              .+......             ...
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~  174 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDI  174 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHH
Confidence            35689999999999999999988732211100       000              00000000             000


Q ss_pred             EEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 046239           63 TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIV  142 (170)
Q Consensus        63 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv  142 (170)
                      ... .+..+.++||||....... .....++.......  .++.+++|+|+...  .......+.+.+.+     .+..+
T Consensus       175 a~~-~~~DvvIIDTaGr~~~~~d-~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gV  243 (433)
T 3kl4_A          175 FVK-NKMDIIIVDTAGRHGYGEE-TKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSV  243 (433)
T ss_dssp             TTT-TTCSEEEEEECCCSSSCCT-THHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEE
T ss_pred             HHh-cCCCEEEEECCCCccccCC-HHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEE
Confidence            000 2467889999997541111 23445555544433  46889999998633  22233344444332     47889


Q ss_pred             EEEcCCCCCC
Q 046239          143 VFTGGDYLED  152 (170)
Q Consensus       143 v~tk~D~~~~  152 (170)
                      |+||+|....
T Consensus       244 IlTKlD~~a~  253 (433)
T 3kl4_A          244 IITKMDGTAK  253 (433)
T ss_dssp             EEECGGGCSC
T ss_pred             EEeccccccc
Confidence            9999997644

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.72  E-value=1.1e-09  Score=83.04  Aligned_cols=29  Identities=38%  Similarity=0.381  Sum_probs=26.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ..++..++|+||||||||||++.|+|...
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            46778999999999999999999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.71  E-value=3e-09  Score=91.55  Aligned_cols=34  Identities=21%  Similarity=0.144  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      .+++.+++++|+||||||||++.|+|...+..|.
T Consensus      1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A         1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp             ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence            4578899999999999999999999988766553

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.69  E-value=7.2e-08  Score=71.69  Aligned_cols=81  Identities=11%  Similarity=0.061  Sum_probs=53.6

Q ss_pred             eEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC-------C-CCHHHHHHHHHHHHH
Q 046239           60 MKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN-------R-FSQEEEAAVHRLPTL  131 (170)
Q Consensus        60 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-------~-~~~~~~~~~~~l~~~  131 (170)
                      ...+.. .+..+.+|||.|..           .++..+..++.+++++|+|+|+++       . -...-...+.++.+.
T Consensus       153 ~~~~~~-~~v~l~iwDtaGQe-----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i  220 (340)
T 4fid_A          153 EYDFVV-KDIPFHLIDVGGQR-----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI  220 (340)
T ss_dssp             EEEEES-SSCEEEEEECCSCH-----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred             EEEEEe-eeeeeccccCCCcc-----------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence            344444 56789999999985           466777788999999999999861       0 011112334444444


Q ss_pred             hccc--ccceEEEEEEcCCCCCC
Q 046239          132 FGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus       132 ~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      ....  ...|++++.||+|+...
T Consensus       221 ~~~~~~~~~piiLv~NK~DL~~e  243 (340)
T 4fid_A          221 MTNEFLKGAVKLIFLNKMDLFEE  243 (340)
T ss_dssp             HHCGGGTTSEEEEEEECHHHHHH
T ss_pred             hhhhccCCCeEEEEEECchhhhh
Confidence            3221  22489999999997653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.67  E-value=3.9e-08  Score=72.19  Aligned_cols=62  Identities=24%  Similarity=0.294  Sum_probs=39.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC----ceeEEEeeEEEEeeCCceEEEEeCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----GVTITCEMKTTVLKDGQVVNVIDTPGLFDS   82 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (170)
                      .+..++++|+||+|||||+|+|+ ...+..|....    +............  ....+++|+||+..+
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~--~~~g~v~d~pg~~~~  229 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPF--GKGSFVGDTPGFSKV  229 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEE--TTTEEEESSCCCSSC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEc--CCCcEEEECcCcCcC
Confidence            35789999999999999999999 76655554332    2111111111211  246789999998743

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.67  E-value=8.3e-08  Score=65.14  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      +++++|+||||||||++.|+|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999865

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.66  E-value=1.5e-08  Score=77.89  Aligned_cols=123  Identities=15%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcccccc-------C-C--------------------CCc-eeEEE-ee--EEEEe
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-------A-G--------------------SSG-VTITC-EM--KTTVL   65 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-------~-~--------------------~~~-~t~~~-~~--~~~~~   65 (170)
                      +..+|+++|++|+||||+++.|.+.....+.       . .                    ..+ .+... ..  .....
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~  177 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK  177 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence            4468999999999999999998863210000       0 0                    000 00000 00  00000


Q ss_pred             eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-ceEEEEE
Q 046239           66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF-DYMIVVF  144 (170)
Q Consensus        66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ivv~  144 (170)
                      ..+..+.++||||....   ......++.. + .....+|.+++|+++..+.  .   .+..... +... . ....+|+
T Consensus       178 ~~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVl  245 (432)
T 2v3c_C          178 FKKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIV  245 (432)
T ss_dssp             TSSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEE
T ss_pred             hhCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEE
Confidence            13557899999998752   1222233322 1 1234689999999986442  1   2222222 2111 1 2489999


Q ss_pred             EcCCCCCC
Q 046239          145 TGGDYLED  152 (170)
Q Consensus       145 tk~D~~~~  152 (170)
                      ||+|....
T Consensus       246 nK~D~~~~  253 (432)
T 2v3c_C          246 TKLDGSAK  253 (432)
T ss_dssp             ECSSSCST
T ss_pred             eCCCCccc
Confidence            99998644

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.65  E-value=3.1e-09  Score=91.49  Aligned_cols=33  Identities=27%  Similarity=0.282  Sum_probs=28.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++++|++|||||||++.|+|...+..|
T Consensus       441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G  473 (1321)
T 4f4c_A          441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG  473 (1321)
T ss_dssp             ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred             ecCCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence            356788999999999999999999998876655

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.65  E-value=6.2e-09  Score=89.46  Aligned_cols=33  Identities=27%  Similarity=0.233  Sum_probs=28.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++++|+||||||||++.|+|...+..|
T Consensus       413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G  445 (1284)
T 3g5u_A          413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG  445 (1284)
T ss_dssp             ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            456789999999999999999999998766544

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.63  E-value=1.7e-07  Score=69.41  Aligned_cols=80  Identities=11%  Similarity=0.072  Sum_probs=52.9

Q ss_pred             eEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC-------CCCC-HHHHHHHHHHHHH
Q 046239           60 MKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR-------NRFS-QEEEAAVHRLPTL  131 (170)
Q Consensus        60 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~~-~~~~~~~~~l~~~  131 (170)
                      ...+.. .+..+.+|||.|..           .++..+..++.+++++++|++++       +.-+ ..-...+.++.+.
T Consensus       159 ~~~~~~-~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i  226 (327)
T 3ohm_A          159 EYPFDL-QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI  226 (327)
T ss_dssp             EEEEEE-TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             EEEEEe-eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence            344555 56789999999986           45666667889999999999764       1111 1122344455554


Q ss_pred             hccc--ccceEEEEEEcCCCCC
Q 046239          132 FGKK--IFDYMIVVFTGGDYLE  151 (170)
Q Consensus       132 ~~~~--~~~~~ivv~tk~D~~~  151 (170)
                      ....  ...|++++.||+|+.+
T Consensus       227 ~~~~~~~~~~iiL~~NK~DL~~  248 (327)
T 3ohm_A          227 ITYPWFQNSSVILFLNKKDLLE  248 (327)
T ss_dssp             HTSGGGTTCEEEEEEECHHHHH
T ss_pred             hhhhccCCceEEEEEECchhhh
Confidence            4322  2248999999999764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.62  E-value=3.1e-08  Score=72.71  Aligned_cols=63  Identities=25%  Similarity=0.215  Sum_probs=38.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC----ceeEEEeeEEEEeeCCceEEEEeCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----GVTITCEMKTTVLKDGQVVNVIDTPGLFDS   82 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (170)
                      .+..++++|+||+|||||+|+|+|...+..|....    +...........  .....+++|+||+..+
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~--~~~~g~v~q~p~~~~~  234 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--FDFGGYVVDTPGFANL  234 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--CTTSCEEESSCSSTTC
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEE--cCCCCEEEECcCCCcc
Confidence            35689999999999999999999988766554332    111111111121  2346789999998653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.62  E-value=3.4e-08  Score=68.87  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...+|+++|++|+|||||++.|++.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            4478999999999999999999864

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.57  E-value=1.3e-07  Score=70.91  Aligned_cols=78  Identities=10%  Similarity=0.086  Sum_probs=51.2

Q ss_pred             EEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHHh
Q 046239           61 KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF--------SQEEEAAVHRLPTLF  132 (170)
Q Consensus        61 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~~~~l~~~~  132 (170)
                      ..+.+ ....+.+|||+|...           +...+..+..+++++|+|+++++.-        ...-.....++.+..
T Consensus       186 ~~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~  253 (353)
T 1cip_A          186 THFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC  253 (353)
T ss_dssp             EEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred             EEEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence            34444 567899999999874           3344556788999999999997421        111223344444444


Q ss_pred             ccc--ccceEEEEEEcCCCC
Q 046239          133 GKK--IFDYMIVVFTGGDYL  150 (170)
Q Consensus       133 ~~~--~~~~~ivv~tk~D~~  150 (170)
                      ...  ...|++++.||+|+.
T Consensus       254 ~~~~~~~~piiLv~NK~DL~  273 (353)
T 1cip_A          254 NNKWFTDTSIILFLNKKDLF  273 (353)
T ss_dssp             TCGGGTTSEEEEEEECHHHH
T ss_pred             cCccccCCcEEEEEECcCch
Confidence            321  224999999999975

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.57  E-value=1.3e-06  Score=69.85  Aligned_cols=34  Identities=15%  Similarity=0.166  Sum_probs=29.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG   50 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~   50 (170)
                      .++.+++|+|+||||||||++.|+|...+..|..
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I  413 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV  413 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            4678999999999999999999999877666543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.55  E-value=2.2e-08  Score=67.53  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      .++..++++|+||||||||++.+.
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHc
Confidence            467889999999999999999533

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.55  E-value=1.3e-06  Score=68.88  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=28.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      .++.+++|+|+||||||||++.|+|...+..|.
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~  324 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEITADEGS  324 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            467889999999999999999999987766553

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.54  E-value=1.8e-06  Score=68.09  Aligned_cols=34  Identities=15%  Similarity=0.157  Sum_probs=29.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG   50 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~   50 (170)
                      .++.+++|+|+||||||||++.|+|...+..|..
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i  343 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI  343 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            4678999999999999999999999887665543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.53  E-value=1.2e-06  Score=69.97  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      +.+++|+|+||||||||++.|+|...+..|.
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            3678999999999999999999998776653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.53  E-value=4.2e-08  Score=73.41  Aligned_cols=62  Identities=29%  Similarity=0.396  Sum_probs=38.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcc-ccccCCCC--c--e-eEEEeeEEEEeeCCceEEEEeCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSS--G--V-TITCEMKTTVLKDGQVVNVIDTPGLFDS   82 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~-~~~~~~~~--~--~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (170)
                      ++..++++|+||+|||||+|.|+|... +..+....  +  . ++. .......  .....++|+||+.++
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~-~~~i~~v--~q~~~l~dtpgv~e~  281 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT-AARLYHF--PHGGDVIDSPGVREF  281 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------C-CCEEEEC--TTSCEEEECHHHHTC
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceE-EEEEEEE--CCCCEecCcccHHHh
Confidence            456899999999999999999999876 55543221  1  0 111 1111222  223467999998664

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.49  E-value=4.3e-07  Score=67.47  Aligned_cols=31  Identities=26%  Similarity=0.297  Sum_probs=26.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ++..++++|+||||||||+++|+|...+..+
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g  200 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEER  200 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence            4568999999999999999999998765433

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.49  E-value=1.6e-07  Score=69.03  Aligned_cols=127  Identities=14%  Similarity=0.138  Sum_probs=67.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC-------CCcee--------EEEeeEEEE----------------
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG-------SSGVT--------ITCEMKTTV----------------   64 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~-------~~~~t--------~~~~~~~~~----------------   64 (170)
                      ..++..|+++|++|+||||++..|++......+..       .....        .......+.                
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~  180 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA  180 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence            35567999999999999999999886543222110       00000        000000000                


Q ss_pred             --eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc----cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 046239           65 --LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA----KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFD  138 (170)
Q Consensus        65 --~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (170)
                        ...+..+.++||||...   .......++.......    ...++.+++|+++.   +..  ..++....+.. . ..
T Consensus       181 ~a~~~~~dvvIiDtpg~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~~--~~l~~a~~~~~-~-~~  250 (306)
T 1vma_A          181 HALARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TGQ--NGLVQAKIFKE-A-VN  250 (306)
T ss_dssp             HHHHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GHH--HHHHHHHHHHH-H-SC
T ss_pred             HHHhcCCCEEEEECCCchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CCH--HHHHHHHHHHh-c-CC
Confidence              01345689999999643   2233333443333222    24578889999875   222  22233322221 1 13


Q ss_pred             eEEEEEEcCCCCCC
Q 046239          139 YMIVVFTGGDYLED  152 (170)
Q Consensus       139 ~~ivv~tk~D~~~~  152 (170)
                      ..-+|+||.|....
T Consensus       251 i~gvVlTk~D~~~~  264 (306)
T 1vma_A          251 VTGIILTKLDGTAK  264 (306)
T ss_dssp             CCEEEEECGGGCSC
T ss_pred             CCEEEEeCCCCccc
Confidence            56788899997544

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.49  E-value=7.6e-07  Score=68.51  Aligned_cols=26  Identities=23%  Similarity=0.110  Sum_probs=22.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+-..|+|+|++++|||||+|.|+|.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34467999999999999999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.48  E-value=1e-07  Score=82.03  Aligned_cols=33  Identities=24%  Similarity=0.187  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++.+++++|+||||||||++.|+|...+..|
T Consensus      1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A         1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp             ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            467789999999999999999999998776554

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.47  E-value=9.4e-08  Score=68.60  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G   62 (257)
T 1g6h_A           29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG   62 (257)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3457789999999999999999999998765544

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.44  E-value=1.3e-07  Score=68.18  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=29.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G   62 (266)
T 2yz2_A           29 VINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG   62 (266)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence            3567789999999999999999999998765544

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.43  E-value=1.3e-07  Score=68.67  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=28.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G   76 (279)
T 2ihy_A           44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSG   76 (279)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence            456789999999999999999999998766544

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.43  E-value=4e-07  Score=66.61  Aligned_cols=123  Identities=18%  Similarity=0.187  Sum_probs=65.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC-------CCceeEE-----------EeeEE----------E-EeeC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG-------SSGVTIT-----------CEMKT----------T-VLKD   67 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~-------~~~~t~~-----------~~~~~----------~-~~~~   67 (170)
                      .++.+++++|++|+||||++..|++......|..       .......           .....          . .. .
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~  181 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S  181 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence            4567999999999999999999876543211210       0000000           00000          0 01 3


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG  147 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (170)
                      +..+.|+||||....   ......++...+.  ...++.+++|+++...  ..   .+..+.+.+..  ....-+|+||.
T Consensus       182 ~~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~---~~~~~~~~~~~--l~~~giVltk~  249 (296)
T 2px0_A          182 EYDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YE---DMKHIVKRFSS--VPVNQYIFTKI  249 (296)
T ss_dssp             GSSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HH---HHHHHTTTTSS--SCCCEEEEECT
T ss_pred             CCCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HH---HHHHHHHHHhc--CCCCEEEEeCC
Confidence            457899999999752   1222223332211  1246778888887632  11   22233333321  13456778999


Q ss_pred             CCCCC
Q 046239          148 DYLED  152 (170)
Q Consensus       148 D~~~~  152 (170)
                      |....
T Consensus       250 D~~~~  254 (296)
T 2px0_A          250 DETTS  254 (296)
T ss_dssp             TTCSC
T ss_pred             Ccccc
Confidence            97654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.42  E-value=1.9e-06  Score=63.03  Aligned_cols=123  Identities=16%  Similarity=0.131  Sum_probs=65.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCcccccc------CC--CCc-------------eeEEEe-------------eEEEE
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS------AG--SSG-------------VTITCE-------------MKTTV   64 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~------~~--~~~-------------~t~~~~-------------~~~~~   64 (170)
                      +..++++|++|+||||++..|++......+      ..  .+.             ......             .....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999988743221111      00  000             000000             00000


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239           65 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF  144 (170)
Q Consensus        65 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (170)
                      . .+..+.++||||..... ..+....++..+...  ..+|.+++|+++...  ......++.+.+    . .....+|+
T Consensus       178 ~-~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~--~~~d~vllVvda~~g--~~~~~~~~~~~~----~-~~i~gvVl  246 (297)
T 1j8m_F          178 S-EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEA--IKPDEVTLVIDASIG--QKAYDLASKFNQ----A-SKIGTIII  246 (297)
T ss_dssp             H-TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHH----T-CTTEEEEE
T ss_pred             h-CCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHH--hcCCEEEEEeeCCch--HHHHHHHHHHHh----h-CCCCEEEE
Confidence            0 34578999999987511 112233333322222  257889999998632  122222332222    1 12378899


Q ss_pred             EcCCCCCC
Q 046239          145 TGGDYLED  152 (170)
Q Consensus       145 tk~D~~~~  152 (170)
                      ||+|....
T Consensus       247 nk~D~~~~  254 (297)
T 1j8m_F          247 TKMDGTAK  254 (297)
T ss_dssp             ECGGGCTT
T ss_pred             eCCCCCcc
Confidence            99997643

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.40  E-value=1.8e-07  Score=62.21  Aligned_cols=33  Identities=21%  Similarity=0.176  Sum_probs=27.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ..++..++++|++|||||||++.|+|.. +..+.
T Consensus        30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~   62 (158)
T 1htw_A           30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN   62 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence            3567899999999999999999999987 54443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.36  E-value=2.5e-07  Score=66.12  Aligned_cols=27  Identities=30%  Similarity=0.459  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..++..++|+|+||||||||++.|+|.
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           26 VPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            456789999999999999999999997

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.35  E-value=2e-07  Score=64.65  Aligned_cols=29  Identities=34%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      +..++..++|+||||||||||++.|+|..
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            55678899999999999999999999865

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.34  E-value=3.1e-07  Score=66.21  Aligned_cols=27  Identities=26%  Similarity=0.470  Sum_probs=24.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..++..++|+|+||||||||++.|+|.
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            457789999999999999999999997

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.31  E-value=2.7e-06  Score=63.80  Aligned_cols=30  Identities=30%  Similarity=0.356  Sum_probs=25.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFK   46 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~   46 (170)
                      .++..++++||||||||||+++|+|...+.
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            355689999999999999999999876543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.31  E-value=1.2e-06  Score=64.74  Aligned_cols=127  Identities=19%  Similarity=0.138  Sum_probs=67.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC-------CCCce-----eE------EEeeEEE--------------
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA-------GSSGV-----TI------TCEMKTT--------------   63 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~-------~~~~~-----t~------~~~~~~~--------------   63 (170)
                      ..++..|+++|++|+||||++..|++......+.       .....     ..      .....-+              
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~  181 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVF  181 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHH
Confidence            4567899999999999999998887643221110       00000     00      0000000              


Q ss_pred             ---E--eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh----ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Q 046239           64 ---V--LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL----AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK  134 (170)
Q Consensus        64 ---~--~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~  134 (170)
                         .  ...+..++|+||||....   .+....++......    ....+|.+++|+++...  .   ..++....+. +
T Consensus       182 ~~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~~~-~  252 (320)
T 1zu4_A          182 DAIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEEFS-K  252 (320)
T ss_dssp             HHHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHHHT-T
T ss_pred             HHHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHHHh-h
Confidence               0  013457899999998752   11222233222111    12347888999998622  2   2333344332 2


Q ss_pred             cccceEEEEEEcCCCCCC
Q 046239          135 KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       135 ~~~~~~ivv~tk~D~~~~  152 (170)
                      . ....-+|+||.|.-..
T Consensus       253 ~-~~i~GvVltk~d~~~~  269 (320)
T 1zu4_A          253 V-ADVSGIILTKMDSTSK  269 (320)
T ss_dssp             T-SCCCEEEEECGGGCSC
T ss_pred             c-CCCcEEEEeCCCCCCc
Confidence            2 1345688999996543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.30  E-value=1.8e-07  Score=64.98  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=28.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG   50 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~   50 (170)
                      .++..++|+|+||||||||++.|+|. .+..|..
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            35678999999999999999999999 7666554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.28  E-value=2.8e-07  Score=63.48  Aligned_cols=26  Identities=38%  Similarity=0.586  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ++..++|+||||||||||++.|++..
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45789999999999999999999853

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.28  E-value=4e-07  Score=63.79  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=24.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ...++..++|+||||||||||++.|+|...
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            345678999999999999999999998764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.26  E-value=4.8e-07  Score=62.24  Aligned_cols=27  Identities=11%  Similarity=0.204  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .++..++|+||||||||||++.|++..
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            356789999999999999999999864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.24  E-value=4.4e-07  Score=63.46  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=24.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ...++..++|+||||||||||++.|+|..
T Consensus        19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34567899999999999999999999865

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.24  E-value=2.1e-05  Score=60.41  Aligned_cols=124  Identities=19%  Similarity=0.111  Sum_probs=65.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh-------CCcccccc--CCCCce-------eEE--EeeEE--------------E-
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL-------GRKAFKAS--AGSSGV-------TIT--CEMKT--------------T-   63 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~-------~~~~~~~~--~~~~~~-------t~~--~~~~~--------------~-   63 (170)
                      .+..+|+++|++|+||||+...|+       |....-..  ......       ...  .....              . 
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            456789999999999999998887       33211000  000000       000  00000              0 


Q ss_pred             Eee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 046239           64 VLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIV  142 (170)
Q Consensus        64 ~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv  142 (170)
                      ... .+..+.|+||||.....   .....++....  ....++.+++|+++....+  ....++.+..    .. ...-+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~--~~~~p~~vllVvda~~g~~--~~~~~~~f~~----~l-~i~gv  245 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHVD---EAMMDEIKQVH--ASINPVETLFVVDAMTGQD--AANTAKAFNE----AL-PLTGV  245 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTTC---HHHHHHHHHHH--HHSCCSEEEEEEETTBCTT--HHHHHHHHHH----HS-CCCCE
T ss_pred             HHHhCCCCEEEEECCCccccc---HHHHHHHHHHH--HhhcCcceeEEeecchhHH--HHHHHHHHhc----cC-CCeEE
Confidence            000 34579999999987531   22333333222  1336788999999864422  2222222222    11 23567


Q ss_pred             EEEcCCCCCC
Q 046239          143 VFTGGDYLED  152 (170)
Q Consensus       143 v~tk~D~~~~  152 (170)
                      |+||+|.-..
T Consensus       246 VlnK~D~~~~  255 (433)
T 2xxa_A          246 VLTKVDGDAR  255 (433)
T ss_dssp             EEECTTSSSC
T ss_pred             EEecCCCCcc
Confidence            9999997543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.22  E-value=6.6e-07  Score=60.63  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .+..++|+||||||||||++.|++..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45689999999999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.21  E-value=1.1e-06  Score=69.39  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ....++.+++|+|+||||||||++.|+|...+..|.
T Consensus        20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~   55 (538)
T 3ozx_A           20 PTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD   55 (538)
T ss_dssp             CCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            445678899999999999999999999987766553

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.21  E-value=2e-06  Score=65.83  Aligned_cols=123  Identities=18%  Similarity=0.147  Sum_probs=65.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccC-------CCCcee----------EEEeeEE--------------EE-e
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-------GSSGVT----------ITCEMKT--------------TV-L   65 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~-------~~~~~t----------~~~~~~~--------------~~-~   65 (170)
                      ++.+|+++|++|+||||++..|++......+.       ...+..          .......              .. .
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~  176 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence            66789999999999999998887543221110       000000          0000000              00 0


Q ss_pred             -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239           66 -KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF  144 (170)
Q Consensus        66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (170)
                       ..+..+.|+||||....   ......++.......  .++.+++|+++...  ......++.+.+.+     ....+|+
T Consensus       177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l-----~i~GVIl  244 (425)
T 2ffh_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL  244 (425)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHT-----CCCEEEE
T ss_pred             HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcC-----CceEEEE
Confidence             13456899999998753   122333443333322  57888999998632  11122222222211     3467899


Q ss_pred             EcCCCCCC
Q 046239          145 TGGDYLED  152 (170)
Q Consensus       145 tk~D~~~~  152 (170)
                      ||.|.-..
T Consensus       245 TKlD~~~~  252 (425)
T 2ffh_A          245 TKLDGDAR  252 (425)
T ss_dssp             ESGGGCSS
T ss_pred             eCcCCccc
Confidence            99996543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.21  E-value=9.6e-07  Score=60.09  Aligned_cols=28  Identities=25%  Similarity=0.509  Sum_probs=24.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...++..++|+|+|||||||+++.|++.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3456789999999999999999999986

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.21  E-value=6.7e-07  Score=61.97  Aligned_cols=29  Identities=31%  Similarity=0.463  Sum_probs=25.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ..++..++|+|+||||||||++.|++...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46778999999999999999999988654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.17  E-value=1.3e-06  Score=69.03  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=30.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ...++.+++|+|+||||||||++.|+|...+..|.
T Consensus        43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            45788999999999999999999999987665544

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.17  E-value=5.3e-07  Score=63.46  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=18.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh-CCc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL-GRK   43 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~-~~~   43 (170)
                      ..++..++|+|||||||||+++.|+ +..
T Consensus        24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           24 KSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4567899999999999999999999 764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.16  E-value=1.6e-06  Score=69.21  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=31.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG   50 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~   50 (170)
                      ...++..++|+||||+|||||++.|+|...+..|..
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            456789999999999999999999999987766543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.16  E-value=6.5e-07  Score=64.36  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=26.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK   46 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~   46 (170)
                      ..++..++++||||||||||++.|+|...+.
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~   52 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYINQT   52 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence            4677899999999999999999999976543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.12  E-value=1.4e-06  Score=63.84  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=25.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ...++..++|+||||||||||++.|+|..
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            34677899999999999999999999764

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.12  E-value=3.9e-05  Score=64.13  Aligned_cols=23  Identities=17%  Similarity=0.070  Sum_probs=21.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHh
Q 046239           17 IGERTVVLLGRTGNGKSATGNSI   39 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l   39 (170)
                      .++..++|+||||+||||+++.+
T Consensus       660 ~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          660 DKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TTBCEEEEECCTTSSHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHH
Confidence            45678999999999999999998

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=98.12  E-value=5.8e-05  Score=58.04  Aligned_cols=126  Identities=18%  Similarity=0.155  Sum_probs=65.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC-----------------ccccccCCCCceeEEEeeEE----EEeeCC--ceEEE
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR-----------------KAFKASAGSSGVTITCEMKT----TVLKDG--QVVNV   73 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~l   73 (170)
                      .+-.+|+|+|+.++|||+|+|.|++.                 ..+..+....+.|....++.    ...+.+  ..+.+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            34567889999999999999976521                 12222223334555444432    111122  45999


Q ss_pred             EeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hcc----cccceEEEEEEc
Q 046239           74 IDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTL---FGK----KIFDYMIVVFTG  146 (170)
Q Consensus        74 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~---~~~----~~~~~~ivv~tk  146 (170)
                      +||.|+.+.....+ .-..+..... .  -..++||-..  ..++..+.+.+..+.++   ...    .....++.++--
T Consensus       145 lDTEG~~d~~~~~~-~d~~ifaLa~-L--LSS~~IyN~~--~~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvRD  218 (457)
T 4ido_A          145 MDTQGTFDSQSTLR-DSATVFALST-M--ISSIQVYNLS--QNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRD  218 (457)
T ss_dssp             EEECCBTCTTCCHH-HHHHHHHHHH-H--HCSEEEEEEE--SSCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEEET
T ss_pred             EeccCCCCcccCcc-ccHHHHHHHH-H--Hhhheeeccc--ccCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEec
Confidence            99999987544321 1111111111 1  1244555443  25666665555554443   221    112255666665


Q ss_pred             CC
Q 046239          147 GD  148 (170)
Q Consensus       147 ~D  148 (170)
                      +-
T Consensus       219 f~  220 (457)
T 4ido_A          219 WS  220 (457)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.11  E-value=1.2e-06  Score=60.60  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .++..|+|+|++|||||||++.|.+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999885

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.11  E-value=2e-06  Score=68.77  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=30.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ...++.+++|+|+||||||||++.|+|...+..|.
T Consensus       113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            45788999999999999999999999987766554

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.08  E-value=1.9e-06  Score=63.45  Aligned_cols=30  Identities=20%  Similarity=0.071  Sum_probs=26.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAF   45 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~   45 (170)
                      ..++..++|+|+||||||||++.|+|...+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            567889999999999999999999986543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.08  E-value=2.1e-06  Score=64.56  Aligned_cols=31  Identities=29%  Similarity=0.509  Sum_probs=26.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ++..++|+|+||||||||+++|++...+..+
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g  204 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPFDQR  204 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence            5678999999999999999999998765443

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.06  E-value=2.1e-06  Score=59.08  Aligned_cols=28  Identities=25%  Similarity=0.493  Sum_probs=22.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...++..|+|+|++||||||+++.|.+.
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3456789999999999999999998753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.05  E-value=2.7e-06  Score=58.95  Aligned_cols=28  Identities=21%  Similarity=0.322  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      .++..|+|+||+||||||+++.|++...
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3567899999999999999999987653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.04  E-value=1.9e-06  Score=58.90  Aligned_cols=28  Identities=25%  Similarity=0.259  Sum_probs=24.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      .+++++|+||+|||||++.|+|... ..|
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G   29 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence            5789999999999999999999765 444

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.04  E-value=2.7e-06  Score=58.48  Aligned_cols=29  Identities=34%  Similarity=0.595  Sum_probs=24.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      +..++..|+|+||+|+|||||++.|++..
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            44567889999999999999999998754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.04  E-value=2.8e-06  Score=60.31  Aligned_cols=28  Identities=29%  Similarity=0.450  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhh---CCcccc
Q 046239           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK   46 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~---~~~~~~   46 (170)
                      +..|+|+|++||||||+++.|+   |...+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~   57 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS   57 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            5789999999999999999999   876543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.03  E-value=1.6e-06  Score=67.08  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=27.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      .++.+++|+|+||||||||++.|+|...+..|
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            46789999999999999999999998765544

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.03  E-value=4.2e-05  Score=62.70  Aligned_cols=26  Identities=19%  Similarity=0.065  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      +..++|+||||+|||||++.++|...
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~  601 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIAL  601 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhh
Confidence            67899999999999999999998653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.02  E-value=3.3e-06  Score=60.26  Aligned_cols=31  Identities=13%  Similarity=0.250  Sum_probs=26.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh---CCccccc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL---GRKAFKA   47 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~---~~~~~~~   47 (170)
                      .++.+|+|+|++||||||+.+.|.   |...+..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~   58 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS   58 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence            456799999999999999999999   8765443

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.01  E-value=3.2e-06  Score=58.09  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .++..|+|+|++||||||+++.|.+..
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            356789999999999999999998865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.00  E-value=3.2e-06  Score=60.03  Aligned_cols=28  Identities=25%  Similarity=0.274  Sum_probs=23.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...++..|+|+|++|||||||++.|++.
T Consensus        21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           21 QSMRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             --CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4556789999999999999999999874

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.95  E-value=5e-05  Score=63.30  Aligned_cols=27  Identities=22%  Similarity=0.214  Sum_probs=23.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..++..++|+||||+|||||++.+.+.
T Consensus       670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          670 EDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            455789999999999999999998643

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.95  E-value=3.7e-06  Score=58.69  Aligned_cols=28  Identities=14%  Similarity=0.205  Sum_probs=24.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...++..++|+|+||||||||++.|++.
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456789999999999999999999984

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.93  E-value=3.8e-06  Score=57.11  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..++++|+|||||||+++.|++
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999985

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.91  E-value=4.9e-06  Score=64.60  Aligned_cols=29  Identities=24%  Similarity=0.220  Sum_probs=25.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++|+|+||||||||++.|+|...+..|
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   58 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT   58 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            78999999999999999999987665554

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.91  E-value=5.9e-06  Score=56.79  Aligned_cols=27  Identities=19%  Similarity=0.181  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .++..|+|+|++||||||+.+.|.+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999998754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.90  E-value=6e-06  Score=60.67  Aligned_cols=27  Identities=19%  Similarity=0.165  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..++..|+|+|++|||||||++.|.+.
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.89  E-value=4.7e-06  Score=63.76  Aligned_cols=29  Identities=28%  Similarity=0.232  Sum_probs=25.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAF   45 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~   45 (170)
                      .++..++|+||||||||||+++|++...+
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            45678999999999999999999986543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.89  E-value=8.6e-06  Score=54.58  Aligned_cols=25  Identities=32%  Similarity=0.501  Sum_probs=21.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .++..|+|+|++||||||+.+.|.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3467899999999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.89  E-value=5.9e-06  Score=64.76  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFK   46 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~   46 (170)
                      .+..++++|+||||||||+++|++...+.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~  287 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPPD  287 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            45679999999999999999999976543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.88  E-value=9e-06  Score=57.14  Aligned_cols=28  Identities=25%  Similarity=0.247  Sum_probs=24.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...++..|+|.|++||||||+++.|.+.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3466789999999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.86  E-value=4.3e-06  Score=62.83  Aligned_cols=29  Identities=28%  Similarity=0.337  Sum_probs=25.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccc
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKA   47 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~   47 (170)
                      +.+++|+|+||||||||++.|+|...+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            68999999999999999999998765443

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.85  E-value=7.2e-06  Score=61.84  Aligned_cols=30  Identities=27%  Similarity=0.271  Sum_probs=26.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAF   45 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~   45 (170)
                      ..++..++++|+||||||||+++|++...+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            456778999999999999999999987654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.85  E-value=7.5e-06  Score=54.70  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +..|+|+|++||||||+.+.|.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.85  E-value=4.7e-06  Score=69.65  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=27.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++.+++|+|+||||||||++.|+|...+..|
T Consensus       696 I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG  728 (986)
T 2iw3_A          696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG  728 (986)
T ss_dssp             EETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            356678999999999999999999998765544

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.83  E-value=6.4e-06  Score=61.54  Aligned_cols=31  Identities=16%  Similarity=0.087  Sum_probs=26.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAF   45 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~   45 (170)
                      +..++.+++|+|+||+|||||++.|+|...+
T Consensus        67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             eecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3457789999999999999999999997654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.82  E-value=0.00015  Score=61.24  Aligned_cols=25  Identities=28%  Similarity=0.251  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      +..++|+||||+|||||++.+ |...
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHH
Confidence            688999999999999999998 7643

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.77  E-value=1.4e-05  Score=55.01  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..++..|+|+|++||||||+.+.|...
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            345678999999999999999998754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.77  E-value=9.3e-06  Score=62.50  Aligned_cols=32  Identities=16%  Similarity=0.059  Sum_probs=27.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK   46 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~   46 (170)
                      ...++.+++|+|+||+|||||++.|+|...+.
T Consensus       153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~  184 (438)
T 2dpy_A          153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD  184 (438)
T ss_dssp             CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            45678899999999999999999999976543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.77  E-value=1.5e-05  Score=58.81  Aligned_cols=27  Identities=19%  Similarity=0.150  Sum_probs=23.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ......|+|+|++|||||||++.|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            455679999999999999999988654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.76  E-value=0.00018  Score=59.30  Aligned_cols=27  Identities=19%  Similarity=0.114  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .++..++|+||||+|||||++.++|..
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            467899999999999999999998864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.74  E-value=1.2e-05  Score=52.85  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ++..++++|++|+|||||++++++...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999998554

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.74  E-value=1.1e-05  Score=54.37  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ++..++++|++|+|||||++++++...
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999998654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.72  E-value=5.7e-06  Score=55.66  Aligned_cols=26  Identities=12%  Similarity=0.163  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAF   45 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~   45 (170)
                      ..++|+|++|||||||++.|++...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            47899999999999999999987654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.70  E-value=3e-05  Score=53.41  Aligned_cols=29  Identities=14%  Similarity=0.152  Sum_probs=24.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ...++..|+|+|++||||||+.+.|.+..
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            34556789999999999999999999853

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.70  E-value=1.9e-05  Score=54.25  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=22.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..++..|+|+|++||||||+++.|.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45568999999999999999999875

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.70  E-value=7.7e-05  Score=56.02  Aligned_cols=79  Identities=11%  Similarity=0.072  Sum_probs=47.4

Q ss_pred             eEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHH
Q 046239           60 MKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF--------SQEEEAAVHRLPTL  131 (170)
Q Consensus        60 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~~~~l~~~  131 (170)
                      ...+.+ .+..+.+|||+|...           ....+..+..+++++|+|+++++.-        ...-.....++...
T Consensus       193 ~~~~~~-~~~~l~i~Dt~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i  260 (362)
T 1zcb_A          193 EYDFEI-KNVPFKMVDVGGQRS-----------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI  260 (362)
T ss_dssp             EEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH
T ss_pred             EEEeee-CCeEEEEEeccchhh-----------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHH
Confidence            344555 578899999999964           3444556778999999999998410        11112233344443


Q ss_pred             hccc--ccceEEEEEEcCCCC
Q 046239          132 FGKK--IFDYMIVVFTGGDYL  150 (170)
Q Consensus       132 ~~~~--~~~~~ivv~tk~D~~  150 (170)
                      ....  ...|++++.||+|+.
T Consensus       261 ~~~~~~~~~piILv~NK~DL~  281 (362)
T 1zcb_A          261 VNNRVFSNVSIILFLNKTDLL  281 (362)
T ss_dssp             HTCGGGTTSEEEEEEECHHHH
T ss_pred             hcchhhCCCCEEEEEEChhhh
Confidence            3221  224999999999976

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.68  E-value=2.1e-05  Score=54.85  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..+|+|+|++||||||+.+.|.+.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999998753

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.67  E-value=6.3e-06  Score=56.18  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHhhCC
Q 046239           22 VVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~   42 (170)
                      |+|+||+|+|||||++.|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.65  E-value=3.1e-05  Score=52.14  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCC
Q 046239           21 TVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..+|+|+||+|||||+.+|.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999998653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.65  E-value=3e-05  Score=53.29  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+|+|+|++||||||+.+.|.+.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHC
Confidence            47999999999999999999873

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=3.7e-05  Score=52.69  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=21.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+...|+++|++||||||+.+.|.+
T Consensus        22 ~~~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           22 SNAMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            34567899999999999999999874

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.62  E-value=3.6e-05  Score=56.05  Aligned_cols=29  Identities=24%  Similarity=0.226  Sum_probs=24.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ...++..|+|+|++|||||||.+.|.+..
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34567899999999999999999887543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.60  E-value=3e-05  Score=57.23  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      -+.++|+|++|||||||+|.|++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4678999999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.60  E-value=4.7e-05  Score=49.94  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhh
Q 046239           20 RTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ...+|+|+||+||||++.+|+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999975

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.59  E-value=3.5e-05  Score=53.64  Aligned_cols=28  Identities=18%  Similarity=0.239  Sum_probs=23.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ..++..++++|+||+|||||++.+++..
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3466789999999999999999998543

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.58  E-value=3.6e-05  Score=51.85  Aligned_cols=24  Identities=13%  Similarity=0.221  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      -..++++|++|+|||||++.|++.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            368899999999999999999875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.57  E-value=3.2e-05  Score=53.06  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999986

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.56  E-value=3.4e-05  Score=64.55  Aligned_cols=27  Identities=26%  Similarity=0.231  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..++.+++|+|+||||||||++.|+|.
T Consensus       458 I~~Ge~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          458 LKRARRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            356788999999999999999999953

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.56  E-value=0.00032  Score=52.09  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+++.|++|+||||+++.+++
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999988

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.55  E-value=4e-05  Score=55.78  Aligned_cols=31  Identities=16%  Similarity=0.112  Sum_probs=26.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAF   45 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~   45 (170)
                      ...++..++|+|+||+|||||++.|++...+
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~   61 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGT   61 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4567789999999999999999998876543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.54  E-value=0.00015  Score=55.16  Aligned_cols=80  Identities=13%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             eEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHH
Q 046239           60 MKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR--------FSQEEEAAVHRLPTL  131 (170)
Q Consensus        60 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~--------~~~~~~~~~~~l~~~  131 (170)
                      ...+.+ .+..+.+|||.|...           +...+..++.+++++|+|+++++-        -...-.....++.+.
T Consensus       209 ~~~~~~-~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i  276 (402)
T 1azs_C          209 ETKFQV-DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI  276 (402)
T ss_dssp             EEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHH
T ss_pred             EEEeec-CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHH
Confidence            344555 567899999999974           344455678899999999999840        011112334444444


Q ss_pred             hccc--ccceEEEEEEcCCCCC
Q 046239          132 FGKK--IFDYMIVVFTGGDYLE  151 (170)
Q Consensus       132 ~~~~--~~~~~ivv~tk~D~~~  151 (170)
                      ....  ...|+++|.||+|+..
T Consensus       277 ~~~~~~~~~piiLvgNK~DL~~  298 (402)
T 1azs_C          277 WNNRWLRTISVILFLNKQDLLA  298 (402)
T ss_dssp             HTCTTCSSCCEEEEEECHHHHH
T ss_pred             HhcccCCCCeEEEEEEChhhhh
Confidence            3321  2248999999999753

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.53  E-value=3.7e-05  Score=55.52  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHhhCC
Q 046239           22 VVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ++++||||+|||||+++|++.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999974

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.52  E-value=0.00022  Score=48.76  Aligned_cols=82  Identities=7%  Similarity=-0.020  Sum_probs=48.3

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG  147 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (170)
                      ...+.++|+|+...     .    .....+.    .+|.+++++..+ ..+..-...++.+.+........++.+|+|++
T Consensus        75 ~yD~viiD~~~~~~-----~----~~~~~l~----~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~  140 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS-----V----ITSAAVM----VSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK  140 (206)
T ss_dssp             TSSEEEEECCSSSS-----H----HHHHHHH----HCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred             CCCEEEEECCCCCC-----H----HHHHHHH----HCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            45789999998764     1    1222222    358899998887 44433455666665543212223669999999


Q ss_pred             CCCCCChhhHHHHhhh
Q 046239          148 DYLEDNEKTLEDYLGH  163 (170)
Q Consensus       148 D~~~~~~~~~~~~~~~  163 (170)
                      |.-......+.++++.
T Consensus       141 ~~~~~~~~~~~~~l~~  156 (206)
T 4dzz_A          141 IEMATMLNVLKESIKD  156 (206)
T ss_dssp             CTTEEEEHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHH
Confidence            8543322455666554

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.52  E-value=6.2e-05  Score=51.59  Aligned_cols=23  Identities=35%  Similarity=0.702  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...|+|+|++||||||+.+.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.52  E-value=5.6e-05  Score=56.84  Aligned_cols=20  Identities=35%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhh
Q 046239           21 TVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~   40 (170)
                      .++|+|+||||||||+++|+
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            67899999999999999987

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.52  E-value=3.2e-06  Score=59.48  Aligned_cols=29  Identities=24%  Similarity=0.228  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++|+||||||||||+++|++...+..+
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G   56 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT   56 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence            35688999999999999999987655443

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.0017  Score=49.85  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+..-|++.||+|+|||+|.+++++.
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            45567899999999999999999863

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.50  E-value=6.3e-05  Score=49.91  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSI   39 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l   39 (170)
                      ..|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999998

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.49  E-value=7e-05  Score=50.08  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999985

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.48  E-value=6.6e-05  Score=50.62  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhh
Q 046239           18 GERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      .+..|++.|++||||||+.+.|.
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999987

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.48  E-value=0.0001  Score=49.86  Aligned_cols=29  Identities=21%  Similarity=0.178  Sum_probs=24.0

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ....++..|+++|.+||||||+.+.|...
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            34456788999999999999999998754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.47  E-value=6.9e-05  Score=49.73  Aligned_cols=21  Identities=19%  Similarity=0.140  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.47  E-value=6.5e-05  Score=50.46  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ++..|++.|++||||||+.+.|.+.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999763

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.47  E-value=6.9e-05  Score=56.53  Aligned_cols=27  Identities=19%  Similarity=0.241  Sum_probs=23.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..++..++++|++|+|||||++.|++.
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            456679999999999999999999873

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.46  E-value=0.0016  Score=46.08  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .....+++.|++|+|||++.+++..
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3456689999999999999999985

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.0013  Score=50.33  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+..-+++.||+|+|||+|.+++++
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3455689999999999999999986

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.45  E-value=9.1e-05  Score=49.55  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +..|++.|++||||||+.+.|..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.43  E-value=0.00012  Score=50.41  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=22.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...+..|+|.|++||||||+.+.|..
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            34567899999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.43  E-value=0.00011  Score=50.23  Aligned_cols=26  Identities=27%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...+..|+|.|++||||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44456899999999999999998863

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.43  E-value=9.5e-05  Score=49.90  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +..|++.|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.42  E-value=0.00011  Score=53.49  Aligned_cols=26  Identities=23%  Similarity=0.400  Sum_probs=22.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...+..|++.|++||||||+.+.|..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44567899999999999999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.42  E-value=7.9e-05  Score=52.30  Aligned_cols=26  Identities=12%  Similarity=0.124  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..++..++|+|++|+|||||+..+++
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence            44678899999999999999999987

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.42  E-value=8.4e-05  Score=51.35  Aligned_cols=26  Identities=12%  Similarity=-0.060  Sum_probs=23.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..++..++++|++|+|||||+..+++
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45677899999999999999999987

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.41  E-value=6.4e-05  Score=53.38  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHhhCCc
Q 046239           22 VVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ++++|++|+|||||++++++..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999743

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.41  E-value=9.5e-05  Score=51.36  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...+|+++|.+|+|||||++.++..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.41  E-value=6e-05  Score=61.00  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..++..++|+|+||||||||++.++
T Consensus       345 I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          345 IPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            3467889999999999999998764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.40  E-value=0.00014  Score=49.21  Aligned_cols=26  Identities=19%  Similarity=0.374  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .++.+|+|+|++||||||+.+.|...
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999988653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.39  E-value=0.00011  Score=49.81  Aligned_cols=24  Identities=13%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+..|++.|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998863

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.38  E-value=0.0012  Score=47.41  Aligned_cols=26  Identities=19%  Similarity=0.399  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .....+++.|++|+|||++.++++..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999999753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.38  E-value=0.00012  Score=50.83  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +++..|+++|++||||||+.+.|..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.37  E-value=8.4e-05  Score=55.12  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ..++++||+|+|||||++.+++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            568999999999999999998754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.36  E-value=0.00013  Score=49.19  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999863

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.35  E-value=9.2e-05  Score=52.77  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +.+|+|+|++||||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999999875

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.35  E-value=2.3e-05  Score=59.66  Aligned_cols=25  Identities=28%  Similarity=0.244  Sum_probs=21.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..++ .++|+|+||+|||||+++|.+
T Consensus        58 ~~~G-~~~lvG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           58 LGGG-FCAFTGETGAGKSIIVDALGL   82 (415)
T ss_dssp             CCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred             cCCC-cEEEECCCCCCHHHHHHHHHH
Confidence            3456 899999999999999988854

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.35  E-value=0.00016  Score=48.58  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhh
Q 046239           18 GERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ....|++.|++||||||+.+.|.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHH
Confidence            45679999999999999999987

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.0019  Score=49.90  Aligned_cols=26  Identities=23%  Similarity=0.463  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+..-|++.||+|+|||+|.+++++.
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence            45677999999999999999999863

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.0026  Score=48.68  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=22.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+..-|++.||+|+|||+|.+++++.
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHH
Confidence            44567999999999999999999963

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.0026  Score=48.31  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+..-+++.||+|+|||+|.+++++.
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence            34466899999999999999999863

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.32  E-value=9.4e-05  Score=53.32  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHhhCCc
Q 046239           22 VVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ++|+|++|+|||||+++|++..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            8999999999999999999743

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.32  E-value=0.00014  Score=49.56  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.32  E-value=0.00013  Score=50.91  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhh
Q 046239           18 GERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ....|+|.|++||||||+.+.|.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH
Confidence            44789999999999999999886

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.31  E-value=0.00016  Score=49.81  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhh
Q 046239           20 RTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ...+|+|+||+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            577899999999999999874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.31  E-value=0.00016  Score=49.63  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +..|++.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.31  E-value=0.00022  Score=48.76  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=21.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      .......|+|.|++||||||+.+.|.
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            34455689999999999999998886

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.31  E-value=7.3e-05  Score=58.84  Aligned_cols=30  Identities=20%  Similarity=0.171  Sum_probs=24.6

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHH--hhCCcc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNS--ILGRKA   44 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~--l~~~~~   44 (170)
                      ...++..++|+|+||||||||++.  +.|...
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~   66 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE   66 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            345778999999999999999999  556543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.31  E-value=0.00016  Score=49.02  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=20.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ++..|++.|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998863

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.31  E-value=0.00018  Score=49.13  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ++..|+|.|++||||||+.+.|...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3578999999999999999998764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.30  E-value=0.00017  Score=48.23  Aligned_cols=24  Identities=13%  Similarity=0.144  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      -..++++|++|||||||++.|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999988764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.29  E-value=0.00012  Score=52.13  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=22.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ....+..|+++|++||||||+.+.|..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345567899999999999999999865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.29  E-value=0.00012  Score=52.83  Aligned_cols=28  Identities=18%  Similarity=0.227  Sum_probs=23.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...++..++|+|++|+|||||+..+++.
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457789999999999999999988863

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.29  E-value=0.00017  Score=49.13  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+...|+|.|++||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34578999999999999999998854

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.29  E-value=0.00017  Score=48.79  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhh
Q 046239           19 ERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      +..|++.|++||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999998875

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.28  E-value=0.00013  Score=59.00  Aligned_cols=22  Identities=36%  Similarity=0.454  Sum_probs=19.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATG   36 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTli   36 (170)
                      ...++.+++|+||||||||||+
T Consensus        40 ~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           40 EIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             EEETTSEEEEECSTTSSHHHHH
T ss_pred             EECCCCEEEEECCCCCCHHHHh
Confidence            3467789999999999999996

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.27  E-value=0.00016  Score=48.86  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..|+|.|++||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.26  E-value=0.00014  Score=55.78  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .+..++|+|+||+|||||+++|++..
T Consensus        25 ~~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           25 ESNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            45788999999999999999998644

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.25  E-value=0.00034  Score=52.36  Aligned_cols=72  Identities=11%  Similarity=0.054  Sum_probs=45.2

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC-------CCC-HHHHHHHHHHHHHhccc--cc
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN-------RFS-QEEEAAVHRLPTLFGKK--IF  137 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-------~~~-~~~~~~~~~l~~~~~~~--~~  137 (170)
                      ...+.+|||+|...           +...+..++.+++++++|+++++       ..+ ..-.....++.+.....  ..
T Consensus       182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~  250 (354)
T 2xtz_A          182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  250 (354)
T ss_dssp             --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred             ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence            35789999999975           33444567889999999999861       111 11123334444433221  22


Q ss_pred             ceEEEEEEcCCCC
Q 046239          138 DYMIVVFTGGDYL  150 (170)
Q Consensus       138 ~~~ivv~tk~D~~  150 (170)
                      .|+++|.||+|+.
T Consensus       251 ~piiLvgNK~DL~  263 (354)
T 2xtz_A          251 TSFMLFLNKFDIF  263 (354)
T ss_dssp             CEEEEEEECHHHH
T ss_pred             CeEEEEEECcchh
Confidence            4899999999975

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.25  E-value=0.0002  Score=49.32  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=21.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .++..|+|.|++||||||+.+.|..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999999874

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.25  E-value=0.00022  Score=49.37  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +..|+|.|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.24  E-value=0.00018  Score=51.24  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .|+|+|++|||||||.+.|++
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.24  E-value=0.00017  Score=49.76  Aligned_cols=27  Identities=22%  Similarity=0.223  Sum_probs=22.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..++..|+++|++||||||+.+.|.+.
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999998754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.24  E-value=0.00019  Score=49.64  Aligned_cols=20  Identities=35%  Similarity=0.730  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHhh
Q 046239           21 TVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~   40 (170)
                      +|+|.|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999885

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.23  E-value=7.2e-05  Score=59.16  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=25.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ..++..++|+|++|||||||.+.|.+...
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            34678999999999999999999987654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.23  E-value=0.00018  Score=48.14  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.23  E-value=0.0002  Score=53.18  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhh
Q 046239           20 RTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ...+|+|+||+||||++.+|+
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            467899999999999999874

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.23  E-value=0.00027  Score=49.60  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...+..|++.|++||||||+++.|...
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            446788999999999999999998754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.23  E-value=0.00029  Score=49.07  Aligned_cols=27  Identities=19%  Similarity=0.417  Sum_probs=21.6

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ......+|.|+||+||||+|....|+.
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            344456788899999999999888864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.0012  Score=50.60  Aligned_cols=26  Identities=15%  Similarity=0.350  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+..-|++.||+|+|||+|.+++++.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence            44567999999999999999999863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.22  E-value=0.00023  Score=50.36  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=21.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .++.+|+|.|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998863

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.20  E-value=0.0002  Score=49.76  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ....|+|+|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998863

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.20  E-value=0.005  Score=45.32  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+..-+++.||+|+|||+|.+++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHH
Confidence            34567999999999999999999863

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.20  E-value=0.00021  Score=49.34  Aligned_cols=21  Identities=38%  Similarity=0.737  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998853

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.20  E-value=0.00017  Score=54.10  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+++|+||+||||++++|.+
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            889999999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.19  E-value=0.00027  Score=49.70  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=22.5

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+.++.+|+|+|++||||||+.+.|.+
T Consensus        11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           11 DDKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456678999999999999999998874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.19  E-value=0.0003  Score=47.40  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...|+|.|++||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988863

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.18  E-value=0.00026  Score=49.89  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhh
Q 046239           18 GERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      .+..|+|.|++||||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999987

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.16  E-value=0.00021  Score=52.68  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhh
Q 046239           21 TVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..+|+|+||+|||||+.+|.
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHH
Confidence            88999999999999999987

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.15  E-value=0.00019  Score=53.57  Aligned_cols=28  Identities=14%  Similarity=0.204  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ..++..++|+|++|+|||||++.+++..
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999998764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.14  E-value=0.00027  Score=48.00  Aligned_cols=23  Identities=17%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.13  E-value=0.0003  Score=49.97  Aligned_cols=27  Identities=22%  Similarity=0.174  Sum_probs=20.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ......+|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            334456899999999999999988754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.13  E-value=8.8e-05  Score=51.10  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCC
Q 046239           21 TVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .|++.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.12  E-value=0.00036  Score=48.94  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .......|+++|++||||||+.+.|..
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            334456899999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.09  E-value=0.00069  Score=48.99  Aligned_cols=24  Identities=29%  Similarity=0.410  Sum_probs=21.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      .....|+|.|++||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999886

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.09  E-value=0.00029  Score=47.38  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+|+|.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988753

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.08  E-value=0.00034  Score=49.71  Aligned_cols=24  Identities=29%  Similarity=0.623  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...+++.|++|+||||+.+++.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            345899999999999999999863

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.08  E-value=0.00025  Score=47.56  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=16.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhh
Q 046239           19 ERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      +..|++.|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999986

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.07  E-value=0.00039  Score=49.68  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...|++.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.06  E-value=0.0045  Score=48.14  Aligned_cols=23  Identities=26%  Similarity=0.650  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .-++|+||+|+|||+|++++.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999873

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.06  E-value=0.0004  Score=45.89  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.03  E-value=0.00035  Score=48.28  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.03  E-value=0.00041  Score=46.83  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.02  E-value=0.00038  Score=46.21  Aligned_cols=22  Identities=18%  Similarity=0.514  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988863

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.02  E-value=0.00041  Score=47.93  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +|+++||+||||+|....|+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999988874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.01  E-value=0.00044  Score=48.19  Aligned_cols=21  Identities=29%  Similarity=0.700  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.99  E-value=0.00058  Score=45.61  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ....+++.|++|+|||++++.+...
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.96  E-value=0.00046  Score=47.84  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998853

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.94  E-value=0.0068  Score=45.71  Aligned_cols=24  Identities=29%  Similarity=0.583  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +...++|.|++|+|||++.++++.
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.89  E-value=0.00067  Score=44.90  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998853

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.89  E-value=0.00064  Score=47.63  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      -.++..++++|++|+|||||...++
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHH
Confidence            4567789999999999999976654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.88  E-value=0.00069  Score=47.12  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ....+++.|++|+||||+++.+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.88  E-value=0.00048  Score=54.21  Aligned_cols=30  Identities=17%  Similarity=0.268  Sum_probs=25.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ...++..++|+|+||+|||||++.+++...
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345677899999999999999999997654

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.86  E-value=0.0006  Score=49.72  Aligned_cols=123  Identities=20%  Similarity=0.146  Sum_probs=66.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCC-------CCcee--------EEEeeEEEE-----------------e
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG-------SSGVT--------ITCEMKTTV-----------------L   65 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~-------~~~~t--------~~~~~~~~~-----------------~   65 (170)
                      ++.+++++|++|+||||++..|++......+..       ..+..        .......+.                 .
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            677999999999999999999886543221100       00000        000000000                 0


Q ss_pred             -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239           66 -KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF  144 (170)
Q Consensus        66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (170)
                       ..+..+.++||||....   ......++.......  .++.+++|+++...  ..   .++.+..+. +. ....-+|+
T Consensus       177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~~---~~~~~~~~~-~~-~~i~givl  244 (295)
T 1ls1_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QE---ALSVARAFD-EK-VGVTGLVL  244 (295)
T ss_dssp             HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HH---HHHHHHHHH-HH-TCCCEEEE
T ss_pred             HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--HH---HHHHHHHHh-hc-CCCCEEEE
Confidence             02457899999988643   122334444433332  46778888887522  22   223332221 11 13467889


Q ss_pred             EcCCCCCC
Q 046239          145 TGGDYLED  152 (170)
Q Consensus       145 tk~D~~~~  152 (170)
                      ||.|.-..
T Consensus       245 nk~d~~~~  252 (295)
T 1ls1_A          245 TKLDGDAR  252 (295)
T ss_dssp             ECGGGCSS
T ss_pred             ECCCCCcc
Confidence            99997544

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.86  E-value=0.0076  Score=49.74  Aligned_cols=73  Identities=15%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ..+..-|++.||+|+|||+|.+++++...                        ..++.++.+-+..  .........+..
T Consensus       235 ~~~p~GILL~GPPGTGKT~LAraiA~elg------------------------~~~~~v~~~~l~s--k~~gese~~lr~  288 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIARAVANETG------------------------AFFFLINGPEIMS--KLAGESESNLRK  288 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHTTTT------------------------CEEEEEEHHHHHS--SCTTHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHhC------------------------CeEEEEEhHHhhc--ccchHHHHHHHH
Confidence            44567799999999999999999997432                        1112233322211  111234444555


Q ss_pred             HHHhccCCccEEEEEEeCC
Q 046239           96 CIGLAKGGIHAVLVVFSAR  114 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~  114 (170)
                      .+..+.....++||+-+++
T Consensus       289 lF~~A~~~~PsIIfIDEiD  307 (806)
T 3cf2_A          289 AFEEAEKNAPAIIFIDELD  307 (806)
T ss_dssp             HHHHHTTSCSEEEEEESGG
T ss_pred             HHHHHHHcCCeEEEEehhc
Confidence            5555556667888887765

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.86  E-value=0.00054  Score=54.15  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ++..++++||||+|||||+++|.+..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            56789999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.86  E-value=0.00062  Score=49.64  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=22.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .++..+++.|++|+|||++.+++.+.
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHH
Confidence            34567999999999999999999863

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.86  E-value=0.001  Score=48.17  Aligned_cols=62  Identities=15%  Similarity=0.113  Sum_probs=37.5

Q ss_pred             EeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           74 IDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        74 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      -..||+..          ...+.+.....++|+++.|+|+.++.+..+..+    .++++.   +|.++|+||+|+...
T Consensus         4 ~w~PGhm~----------ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~~---kp~ilVlNK~DL~~~   65 (282)
T 1puj_A            4 QWFPGHMA----------KARREVTEKLKLIDIVYELVDARIPMSSRNPMI----EDILKN---KPRIMLLNKADKADA   65 (282)
T ss_dssp             -----CTT----------HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHH----HHHCSS---SCEEEEEECGGGSCH
T ss_pred             cCCchHHH----------HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHH----HHHHCC---CCEEEEEECcccCCH
Confidence            35678764          233333445567799999999986655543222    222332   599999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.85  E-value=0.00075  Score=46.03  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ..+++.|++|+|||+|+++++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            678999999999999999988643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.85  E-value=0.00041  Score=50.48  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=17.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +...|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999988764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.85  E-value=0.00065  Score=49.18  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +...+++.|++|+||||+++++.+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            456899999999999999999986

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.84  E-value=0.00073  Score=49.05  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999874

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.83  E-value=0.00083  Score=49.34  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +..|+|+||+|||||||...|+..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            457899999999999999998754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.82  E-value=0.00077  Score=46.02  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .-...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999988864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.82  E-value=0.00076  Score=46.05  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998865

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.81  E-value=0.00097  Score=49.44  Aligned_cols=25  Identities=36%  Similarity=0.537  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      +..|+|+||+|+|||||...|....
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHC
Confidence            3579999999999999999998654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.81  E-value=0.00099  Score=45.71  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+..|+++|++|+|||||...|...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3567899999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.80  E-value=0.001  Score=48.76  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+..|+|+||+|||||||...|...
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHh
Confidence            3467899999999999999998743

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.78  E-value=0.00072  Score=45.04  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ....+++.|++|+|||++++.+...
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999988754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.77  E-value=0.00097  Score=48.48  Aligned_cols=27  Identities=22%  Similarity=0.334  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .+...+++.|++|+|||++.+.+.+..
T Consensus        45 ~~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           45 RPIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             SCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHHH
Confidence            344579999999999999999988643

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.77  E-value=0.0012  Score=50.54  Aligned_cols=27  Identities=33%  Similarity=0.276  Sum_probs=22.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ......|+++|++||||||+.+.|...
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            344578899999999999999998753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.77  E-value=0.0015  Score=47.47  Aligned_cols=27  Identities=19%  Similarity=0.204  Sum_probs=21.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ......+++.||+|+|||+|.++++..
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            344456778899999999999999853

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.75  E-value=0.00088  Score=50.36  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhh
Q 046239           20 RTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ...+|.|+||+||||++.+|+
T Consensus        26 gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            567899999999999999875

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.74  E-value=0.00089  Score=50.91  Aligned_cols=25  Identities=20%  Similarity=0.199  Sum_probs=21.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..++..++|+|++|+|||||+..++
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHH
Confidence            4567789999999999999999654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.72  E-value=0.00092  Score=46.88  Aligned_cols=27  Identities=15%  Similarity=0.174  Sum_probs=19.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +..++..|++.|++||||||+++.|..
T Consensus        21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           21 SMARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             --CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            335678899999999999999998764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.71  E-value=0.00096  Score=49.56  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..|+|.|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            58999999999999999888753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.70  E-value=0.0012  Score=42.68  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ....+++.|++|+|||++.+++...
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHh
Confidence            4456899999999999999999753

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.70  E-value=0.00096  Score=50.43  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .+..++++|++|+||||+++.++...
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            56788999999999999999988643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.69  E-value=0.0011  Score=48.83  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..|+|+|++||||||+...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999888753

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.68  E-value=0.0053  Score=50.33  Aligned_cols=25  Identities=28%  Similarity=0.493  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ....++++|++|+|||++++.+...
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence            4567899999999999999998864

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.67  E-value=0.05  Score=39.68  Aligned_cols=22  Identities=14%  Similarity=0.312  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+++-|++|+|||+++++++.
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHH
T ss_pred             eEEEeeCcCCCCHHHHHHHHHH
Confidence            3456667799999999999975

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.66  E-value=0.0011  Score=50.33  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...|+|.||+|+|||||...|..
T Consensus         2 ~~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHH
Confidence            45789999999999999988864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.65  E-value=0.0013  Score=49.39  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHh
Q 046239           17 IGERTVVLLGRTGNGKSATGNSI   39 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l   39 (170)
                      ....+|+|+|.+|||||||++.+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            55679999999999999999875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.63  E-value=0.0013  Score=46.34  Aligned_cols=30  Identities=23%  Similarity=0.352  Sum_probs=21.3

Q ss_pred             CCCCCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           12 PTSPSIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        12 ~~~~~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +......+..|++.|++||||||+++.|..
T Consensus        20 ~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           20 FQSNAMNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             ------CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            334444578899999999999999998754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.63  E-value=0.0046  Score=51.46  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ...++++|++|+|||++++.++...
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3457999999999999999998653

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.62  E-value=0.0016  Score=47.31  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .....+++.|++|+|||++.++++...
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            445679999999999999998877543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.56  E-value=0.0011  Score=47.26  Aligned_cols=26  Identities=19%  Similarity=0.178  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+...|++.|..||||||+.+.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            45578999999999999999998754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.55  E-value=0.0012  Score=49.22  Aligned_cols=27  Identities=26%  Similarity=0.409  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .....++|.|++|+|||||++.+.+..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            445688999999999999999998643

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.54  E-value=0.001  Score=52.00  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCC
Q 046239           21 TVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      -++|+||+|+|||||++++++.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	3e-27
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	3e-09
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	6e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-05

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  101 bits (251), Expect = 3e-27
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 3/152 (1%)

Query: 19  ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPG 78
             T++++G+ G GKS+T NSI+G +    S           +  +  + G  +N+IDTPG
Sbjct: 32  SLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRP-VMVSRSRAGFTLNIIDTPG 89

Query: 79  LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFD 138
           L +    ++     I+K   L K     + V      R    ++     +   FGK I++
Sbjct: 90  LIEGGYINDMA-LNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN 148

Query: 139 YMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
             IV  T   +   +    +++        L+
Sbjct: 149 KAIVALTHAQFSPPDGLPYDEFFSKRSEALLQ 180

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.5 bits (125), Expect = 3e-09
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 14/135 (10%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-ITCEMKTTVLKDGQVVNVIDTPGLF 80
           V + G TG+GKS+  N++ G    +  A  +GV  +T E       +   V   D PG+ 
Sbjct: 59  VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIG 118

Query: 81  DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM 140
            ++   +   +++                +  +  RF + +      +       +    
Sbjct: 119 STNFPPDTYLEKMKFY--------EYDFFIIISATRFKKNDIDIAKAI-----SMMKKEF 165

Query: 141 IVVFTGGDYLEDNEK 155
             V T  D    NE 
Sbjct: 166 YFVRTKVDSDITNEA 180

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.2 bits (98), Expect = 6e-06
 Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 2/148 (1%)

Query: 21  TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
            V L+G    GKS   + +   K     A     T+   +      DG+   + D PGL 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 81  DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM 140
           + +     +G + ++ I   +  +H + +          +       L     +      
Sbjct: 61  EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ 120

Query: 141 IVVFTGGDYLEDNEKTLEDYLGHECPKP 168
           I+V    D  E  E             P
Sbjct: 121 IIVANKMDMPEAAENLEAFKEKLTDDYP 148

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 22  VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
           V L+G    GKS+   ++         A     T++  +    + + +   + D PG+ +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 82  SSAGSEFVGKEIVKCIGLAKGGIH 105
            ++  + +G E ++ I   +  ++
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLY 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.78
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.78
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.78
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.76
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.76
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.76
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.75
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.75
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.73
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.72
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.72
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.71
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.69
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.68
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.68
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.67
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.67
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.66
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.64
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.64
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.64
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.63
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.62
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.61
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.59
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.59
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.57
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.57
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.56
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.55
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.55
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.54
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.54
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.54
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.54
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.53
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.52
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.52
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.52
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.52
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.51
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.51
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.5
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.49
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.48
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.45
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.44
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.44
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.43
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.41
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.41
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.4
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.37
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.37
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.26
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.23
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.23
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.21
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.2
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.19
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.19
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.18
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.17
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.16
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.16
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.16
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.16
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.14
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.14
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.13
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.12
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.11
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.11
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.11
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.09
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.08
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.07
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.05
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.99
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.98
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.97
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.96
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.95
d1okkd2	207	GTPase domain of the signal recognition particle r	98.92
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.88
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.78
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.76
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.63
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.63
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.33
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.09
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.96
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.85
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.83
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.82
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.8
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.8
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.79
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.78
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.78
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.77
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.76
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.75
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.74
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.73
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.71
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.71
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.71
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.7
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.7
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.69
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.67
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.66
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.66
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.65
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.64
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.62
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.62
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.61
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.6
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.6
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.59
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.57
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.57
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.57
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.55
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.55
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.55
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.51
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.5
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.47
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.46
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.46
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.44
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.43
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.41
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.41
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.3
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.28
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.27
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.26
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.22
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.21
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.2
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.19
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.17
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.16
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.16
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.14
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.13
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.13
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.13
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.12
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.12
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.11
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.06
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.05
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.04
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.02
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.97
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.95
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.94
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.93
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.86
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.85
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.84
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.84
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.81
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.81
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.79
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.76
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.74
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.72
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.72
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.7
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.62
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.61
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.6
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.6
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.6
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.56
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.51
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.51
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.49
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.47
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.41
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.4
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.33
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.32
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.12
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.08
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.0
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.88
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.73
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.73
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.67
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.65
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.62
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.62
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.57
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.53
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.51
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.45
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.44
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.43
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.41
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.36
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.21
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.16
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.14
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.13
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.1
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.1
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.02
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.91
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.68
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.65
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.61
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.21
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.86
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.85
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.78
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.49
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.93
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.47
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.18
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.18
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.07
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.59
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.43
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	90.08
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.84
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.72
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.56
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.28
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	89.13
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.1
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	88.9
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.69
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.33
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.55
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.96
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	86.02
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	84.84
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	84.26
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	83.84
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	82.58
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.5
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	80.92
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	80.41

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.91  E-value=9.1e-24  Score=150.60  Aligned_cols=143  Identities=23%  Similarity=0.356  Sum_probs=110.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....+|+|+|++|+|||||+|+|+|...+.... ..+.|..+......+ .+..+.++||||+.+.....+.....+...
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~-~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecC-CCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            456899999999999999999999987665433 335665566666666 788999999999987654444333333322


Q ss_pred             HHhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhh
Q 046239           97 IGLAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGH  163 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~  163 (170)
                      .  ....+|+++||+.++ .+++..+...++.+.+.++...++++++|+||+|...+++..+++|+..
T Consensus       108 ~--~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~  173 (257)
T d1h65a_         108 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK  173 (257)
T ss_dssp             T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH
T ss_pred             H--hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh
Confidence            2  345778999998885 4689999999999999999998899999999999997766677777654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=7.1e-21  Score=128.45  Aligned_cols=126  Identities=24%  Similarity=0.223  Sum_probs=90.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      ..|+++|.+|+|||||+|+|+|........ ..+.|.......... .+..+.++||||+.......   ...+......
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~---~~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDAL---GEFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHH---HHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecc-cCCcccccccceeee-eeeeeeeccccccccccccc---chhccccccc
Confidence            479999999999999999999976433221 223343333333444 67889999999998653322   2333444445


Q ss_pred             ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ....+|++++|+|++++++..+..+.+.+++...+   .|+++|+||+|+....
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~~~~  131 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKYP  131 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSSH
T ss_pred             ccccccceeeeechhhhhcccccchhhheeccccc---hhhhhhhcccccccCH
Confidence            56789999999999888888887777877765433   4999999999998764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=6.6e-18  Score=115.18  Aligned_cols=125  Identities=20%  Similarity=0.203  Sum_probs=81.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH--HHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV--GKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~--~~~~~~~   96 (170)
                      -++|+|+|++|+|||||+|+|+|.............|...  ....  ....+.++|+++...........  ...+...
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~--~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL--NFYI--INDELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCE--EEEE--ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeec--cccc--ccccceEEEEEeeccccccccccchhhhHHhh
Confidence            3589999999999999999999865322212222222222  2222  24567789998887544433222  2223333


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+++++++|+.++++..+..+++.+.+.-     .|+++|+||+|++..
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~-----~piivv~NK~D~~~~  149 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYG-----IPVIVIATKADKIPK  149 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSCG
T ss_pred             hhccccchhhhhhhhhcccccccccccccccccccc-----CcceechhhccccCH
Confidence            344567789999999998889988888888887642     589999999998765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=2.6e-18  Score=115.99  Aligned_cols=121  Identities=21%  Similarity=0.194  Sum_probs=80.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch----HHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE----FVGKEIVKC   96 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----~~~~~~~~~   96 (170)
                      .|+++|++|+|||||+|+|+|.....  ...++.|..  ...+.+   ..+.++||||+........    .+...+..+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~--~~~~g~T~~--~~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRR--GKRPGVTRK--IIEIEW---KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSS--SSSTTCTTS--CEEEEE---TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee--eCCCCEeec--cccccc---ccceecccCCceeccccccccccccchhhhhh
Confidence            58999999999999999999976422  123334433  233332   3578899999876544433    233344455


Q ss_pred             HHhccCCccEEEEEEeCCC-----------CCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARN-----------RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .......+|++++|+|+..           .....+...++.+.+.     ..|+++|+||+|++...
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-----~~p~iiv~NK~D~~~~~  137 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-----DIPTIVAVNKLDKIKNV  137 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-----TCCEEEEEECGGGCSCH
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-----CCCEEEEEeeeehhhhH
Confidence            5556678899999999752           3344455556655543     25999999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=7.9e-19  Score=118.39  Aligned_cols=127  Identities=17%  Similarity=0.191  Sum_probs=78.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      .|+++|++|+|||||+|+|+|.......  ..+.+............+..+.++||||+............++..    .
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~----~   76 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR----H   76 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH----H
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceec--cCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHH----H
Confidence            4899999999999999999987654332  223333333333333356789999999987633222222223332    3


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ...+++++++++..............++.........+|+++|+||+|+....
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~  129 (180)
T d1udxa2          77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEE  129 (180)
T ss_dssp             HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHH
T ss_pred             HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHH
Confidence            45668999999986443223333333333322222335999999999998763

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.1e-18  Score=113.27  Aligned_cols=127  Identities=22%  Similarity=0.214  Sum_probs=84.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +.+|+++|++|+|||||+|+|+|....... ..++.+.........+ .+..+.++|+||+.+....   ..........
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~---~~~~~~~~~~   75 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDE---VERIGIERAW   75 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSH---HHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEee-cccccccceEeeeeec-cCceeeecccccccccccc---chhHHHHHHH
Confidence            468999999999999999999987653322 2223333333334444 6788999999999874322   2222233333


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+...+|+++++++........+...+..+.......  .|+++|+||+|+...
T Consensus        76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE  127 (161)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC
T ss_pred             HHHHhccccceeeccccccchhhhhhhhhhhhhcccc--cceeeccchhhhhhh
Confidence            4556789999999997655555555554444444333  599999999997554

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=3.3e-18  Score=115.73  Aligned_cols=135  Identities=21%  Similarity=0.203  Sum_probs=83.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHH-HHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVG-KEIVK   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~-~~~~~   95 (170)
                      ....+|+++|.+|+|||||+|+|+|......+. ....+.........+ .+..+.++|+||+........... .....
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeec-ccccccccceeeecc-CCceeeeeccCCccccccccccccccchhH
Confidence            356899999999999999999999876433322 223444444444555 778899999999975322111100 00011


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHH
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLE  158 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~  158 (170)
                      ........+|++++|+++..+.......++..+...   .  .|+++|+||+|+....+..+.
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~---~--~~~i~v~nK~D~~~~~~~~~~  141 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR---G--RASVVVFNKWDLVVHREKRYD  141 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSTTGGGCHH
T ss_pred             HHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHc---C--Cceeeeccchhhhcchhhhhh
Confidence            111223456999999999888888887777776654   2  589999999998866543333

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=4e-18  Score=119.07  Aligned_cols=116  Identities=16%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEee------------------EEEEeeCCceEEEEeCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM------------------KTTVLKDGQVVNVIDTPGL   79 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~------------------~~~~~~~~~~~~l~DtpG~   79 (170)
                      ++++|+++|.+++|||||+|+|++.......  ..+.+.....                  ..+.+ ....+.++||||+
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtPGh   80 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRE-TLPGLFFIDTPGH   80 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG-TCCEEEEECCCTT
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhcchhee--cCceeeeccccccccccccccccccccceeecc-cccccccccccce
Confidence            3567999999999999999999875321111  0011100000                  01112 4567899999999


Q ss_pred             CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .++.....           .....+|++++|+|+.++++.++...+..+...-     .|+++++||+|.+..
T Consensus        81 ~~f~~~~~-----------~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-----~p~iivlNK~D~~~~  137 (227)
T d1g7sa4          81 EAFTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMYR-----TPFVVAANKIDRIHG  137 (227)
T ss_dssp             SCCTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSTT
T ss_pred             ecccccch-----------hcccccceEEEEEecccCcccchhHHHHHhhcCC-----CeEEEEEECccCCCc
Confidence            87643322           2456789999999999899999998888887752     499999999998765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=3.9e-18  Score=117.18  Aligned_cols=119  Identities=17%  Similarity=0.221  Sum_probs=87.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcccccc---------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS---------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDS   82 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (170)
                      +..+|+++|..++|||||+++|+........               ....+.|.......+.+ ++..+.++||||+.+|
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchhh
Confidence            4578999999999999999999632110000               01124555555566667 7889999999999863


Q ss_pred             CCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                             ..++.    .....+|++++|+++.++...++.+.+..+....   + +++++++||+|.++.
T Consensus        81 -------~~~~~----~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~g---i-~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          81 -------IKNMI----TGAAQMDGAILVVSAADGPMPQTREHILLARQVG---V-PYIVVFMNKVDMVDD  135 (204)
T ss_dssp             -------HHHHH----HHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTT---C-CCEEEEEECGGGCCC
T ss_pred             -------HHHHH----HHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcC---C-CeEEEEEEecccCCC
Confidence                   23333    3456779999999999999999988888777752   1 357888999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=1.9e-17  Score=110.67  Aligned_cols=123  Identities=23%  Similarity=0.282  Sum_probs=80.2

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      .|+++|++|+|||||+|+|+|......+ ...+.|.......... ....+.++|+||+.......  ........+...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~--~~~~~~~~~~~~   77 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDI--ISQKMKEVTLNM   77 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGC--CCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceec-ccCceeeccccccccc-cccccccccccceeeeeccc--cccccccccccc
Confidence            6899999999999999999987643222 2233444333444444 67789999999987643211  122223333334


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+|+++++.+.++.....+..+++.+...-     .|+++|+||+|+++.
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~-----~pviiv~NK~Dl~~~  124 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKEDESLADFLRKST-----VDTILVANKAENLRE  124 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHHT-----CCEEEEEESCCSHHH
T ss_pred             cccCcEEEEeeccccccccccccccccccccc-----ccccccchhhhhhhh
Confidence            56789999999998888888877777776532     489999999998755

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.73  E-value=2.5e-17  Score=112.27  Aligned_cols=119  Identities=17%  Similarity=0.171  Sum_probs=88.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccc--------------cccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAF--------------KASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS   83 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (170)
                      +..+|+++|..++|||||+++|++....              .......+.|.......+.+ .+..+.++||||+.+  
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~~--   78 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD--   78 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchHH--
Confidence            5578999999999999999999752100              01112235666655566666 788999999999974  


Q ss_pred             CCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                               +.....+....+|++++|+|+.++...++++.+..+.... .   +++|+++||+|...+
T Consensus        79 ---------f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~-~---~~iIv~iNK~D~~~~  134 (196)
T d1d2ea3          79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG-V---EHVVVYVNKADAVQD  134 (196)
T ss_dssp             ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTT-C---CCEEEEEECGGGCSC
T ss_pred             ---------HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhc-C---CcEEEEEeccccccc
Confidence                     3333345668889999999999999999888877776642 1   489999999999865

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.4e-17  Score=123.75  Aligned_cols=120  Identities=19%  Similarity=0.179  Sum_probs=81.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCcee-EEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-ITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ...+|+++|++|+|||||+|+|+|......+....+.+ ++.....+..+....+.+|||||+.......+....+    
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~----  130 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEK----  130 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHH----
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHH----
Confidence            45789999999999999999999976543333222211 1112233444456779999999998754443322211    


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL  150 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~  150 (170)
                        .....+|+++++.+  .+++..+..+++.+.+.-     +|+++|+||+|..
T Consensus       131 --~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~-----k~~~~V~nK~D~~  175 (400)
T d1tq4a_         131 --MKFYEYDFFIIISA--TRFKKNDIDIAKAISMMK-----KEFYFVRTKVDSD  175 (400)
T ss_dssp             --TTGGGCSEEEEEES--SCCCHHHHHHHHHHHHTT-----CEEEEEECCHHHH
T ss_pred             --hhhhcceEEEEecC--CCCCHHHHHHHHHHHHcC-----CCEEEEEeCcccc
Confidence              23445688877766  378899988888887752     5999999999964

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.72  E-value=3.4e-17  Score=110.28  Aligned_cols=118  Identities=19%  Similarity=0.282  Sum_probs=80.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCcccccc-----CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      ..+|+++|++++|||||+|+|++.......     ....+.+.........+ .+..+.++|+||+.+           +
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~~-----------~   72 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD-----------L   72 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------H
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCccccccccccccc-----------c
Confidence            458999999999999999999975432211     11122333333344444 677889999999763           3


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ..........+|++++++++.++...++...+..+...   +  .|+++|+||+|+...+
T Consensus        73 ~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~---~--~p~iiv~NKiD~~~~~  127 (179)
T d1wb1a4          73 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF---N--IPIIVVITKSDNAGTE  127 (179)
T ss_dssp             HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCBCEEEECTTSSCHH
T ss_pred             ccchhhhhhhccccccccccccccchhhhhhhhhhhhc---C--CcceeccccccccCHH
Confidence            44444566788999999999988888887777666553   2  4899999999998763

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.71  E-value=1.2e-16  Score=105.95  Aligned_cols=115  Identities=16%  Similarity=0.152  Sum_probs=77.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|++|+|||||+++|++.....     ...|.......+.. .+..+.++|+||...           +.....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~~~   64 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDT-----ISPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSYWR   64 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSS-----CCCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCc-----ccceEeeeeeeccc-cccceeeeecCcchh-----------hhhHHH
Confidence            4689999999999999999999865422     22233333444555 678999999999752           334445


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+++++++++..+..+..+  ....+...+..  ....|+++|.||+|+.+.
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  118 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA  118 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             hhhhhhhcceeeeecccchhHHH--HHHhhhhhhhhcccCCCceEEEEeccccccc
Confidence            57788999999999875544433  12222222221  122599999999998754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.69  E-value=3.2e-16  Score=104.87  Aligned_cols=123  Identities=18%  Similarity=0.121  Sum_probs=81.1

Q ss_pred             CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239           13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE   92 (170)
Q Consensus        13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~   92 (170)
                      .+...+..+|+++|++|+|||||+|.+++.......     .+.........+ .+..+.++|++|...           
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~i~~-~~~~~~i~d~~g~~~-----------   72 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRK-----------   72 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGG-----------
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-----eeeeeeEEEecc-CCeeEeEeecccccc-----------
Confidence            345667789999999999999999999886542221     111122333444 577899999999874           


Q ss_pred             HHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      +...+......+|++++|+|+++..+..+. ..+..+..... ....|+++|.||+|+....
T Consensus        73 ~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~~  133 (176)
T d1fzqa_          73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTAA  133 (176)
T ss_dssp             GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTCC
T ss_pred             chhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEeccccccc
Confidence            233344556788999999999855444432 22222222221 1235999999999998763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=6.2e-17  Score=109.35  Aligned_cols=126  Identities=17%  Similarity=0.162  Sum_probs=75.1

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      .|+|+|++|+|||||+|+|+|......  ...+.|.........+..+..+.++||||+............++...+.  
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~--~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~--   78 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE--   78 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH--
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcee--cCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHH--
Confidence            589999999999999999998765322  2334454444445555456789999999985322222233344443333  


Q ss_pred             cCCccEEEEEEeCC--CCCCHHHHHH-HHHHHHHhcc-cccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSAR--NRFSQEEEAA-VHRLPTLFGK-KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~--~~~~~~~~~~-~~~l~~~~~~-~~~~~~ivv~tk~D~~~~  152 (170)
                        .++.+++++...  +.....+... .......... ...+|+++|+||+|+.+.
T Consensus        79 --~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~  132 (185)
T d1lnza2          79 --RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA  132 (185)
T ss_dssp             --HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred             --HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH
Confidence              336777676654  2333333222 2222222211 223589999999998866

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=1.3e-16  Score=105.27  Aligned_cols=120  Identities=20%  Similarity=0.294  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC--chHHHHHHHHHHH
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG--SEFVGKEIVKCIG   98 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~   98 (170)
                      +|+++|.+|+|||||+|+|+|....... ..++.+.......... .+..+.++||||+......  ...........  
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~--   77 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE--   77 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeee-ccccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHH--
Confidence            7999999999999999999986543222 2223333333344444 6788999999998643221  11112233322  


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                        ...+|++++|+|++++....+..+...+..       .++++++||.|..+..
T Consensus        78 --~~~ad~ii~v~d~~~~~~~~~~~~~~~~~~-------~~~i~~~~k~d~~~~~  123 (160)
T d1xzpa2          78 --IEKADIVLFVLDASSPLDEEDRKILERIKN-------KRYLVVINKVDVVEKI  123 (160)
T ss_dssp             --HHHCSEEEEEEETTSCCCHHHHHHHHHHTT-------SSEEEEEEECSSCCCC
T ss_pred             --HHhCCEEEEEEeCCCCcchhhhhhhhhccc-------ccceeeeeeccccchh
Confidence              345599999999987777766555443322       3899999999998763

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.4e-16  Score=104.99  Aligned_cols=118  Identities=14%  Similarity=0.110  Sum_probs=73.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++++++...........+.+..  ....... ....+.+|||||..+           +.....
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~wDt~G~e~-----------~~~~~~   72 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK--VKTIYRNDKRIKLQIWDTAGQER-----------YRTITT   72 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCccccccccccee--eEEEEeecceEEEEEEECCCchh-----------hHHHHH
Confidence            67999999999999999999865433222222222222  2222221 124688999999764           233445


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .+...+|++++|+|+++.-+... ..++..+......  ..|+++|.||+|....
T Consensus        73 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~  125 (169)
T d3raba_          73 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDE  125 (169)
T ss_dssp             TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCS--CCEEEEEEECTTCGGG
T ss_pred             HHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCC--cceEEEEEeecccccc
Confidence            57789999999999974322222 2333333333222  2488999999997654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=4.8e-16  Score=110.63  Aligned_cols=119  Identities=22%  Similarity=0.275  Sum_probs=88.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhh---CCcccc-------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK-------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDS   82 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~---~~~~~~-------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (170)
                      -++|+++|..|+|||||+.+|+   |.....             ......+.|+......+.| ++..+.++||||+.+|
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSSC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhhh
Confidence            3579999999999999999885   221110             0112234556666677878 8999999999999997


Q ss_pred             CCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239           83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE  154 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~  154 (170)
                      ....       ..    ...-+|.+++|+++.++...+....++...+.   +  .|.++++||+|....+-
T Consensus        85 ~~e~-------~~----~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~---~--lP~i~fINKmDr~~ad~  140 (276)
T d2bv3a2          85 TIEV-------ER----SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY---K--VPRIAFANKMDKTGADL  140 (276)
T ss_dssp             STTH-------HH----HHHHCCEEEEEEETTTSSCHHHHHHHHHHHTT---T--CCEEEEEECTTSTTCCH
T ss_pred             HHHH-------HH----HHHhhhheEEeccccCCcchhHHHHHHHHHHc---C--CCEEEEEeccccccccc
Confidence            5332       22    23345999999999999999999999888775   2  49999999999988743

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.66  E-value=1e-15  Score=101.46  Aligned_cols=116  Identities=17%  Similarity=0.119  Sum_probs=75.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +.+|+++|++|+|||||++.+++........    .|.......... ....+.++|+||...           +...+.
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~----~T~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~   65 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMI----PTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWE   65 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----CCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCccc----ccceeeeeeeee-eeEEEEEeecccccc-----------cccccc
Confidence            4689999999999999999998755422211    233333344455 678899999999753           233334


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      .+..+++++++|+++.+..+...  ...++......  ....|+++|.||.|+.+.
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~  119 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA  119 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             ccccccchhhcccccccccccch--hhhhhhhhhhhhcccCCcEEEEEeccccchh
Confidence            45678899999999975433332  22223332221  122499999999998765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.9e-16  Score=104.17  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=75.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|.+|+|||||++.+++..........  .+.......... .+  ..+.+|||||...           +....
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~--~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~   71 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT--IGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSIT   71 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC--CSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccccc--ccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence            68999999999999999999875543222222  222223333333 33  3467899999753           34445


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......++++++|++.++..+... ..++..+.+.....  .|+++|.||+|..+.
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~ilvgnK~D~~~~  125 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAER  125 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhccccccc--ccEEEEEeecccccc
Confidence            567789999999999874433222 33444444443333  489999999997654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.65  E-value=2.2e-15  Score=104.41  Aligned_cols=123  Identities=15%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC---Ccccc----------------------------ccCCCCceeEEEeeEEEE
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG---RKAFK----------------------------ASAGSSGVTITCEMKTTV   64 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~---~~~~~----------------------------~~~~~~~~t~~~~~~~~~   64 (170)
                      .+...+|+++|..++|||||+++|+.   .....                            ......+.+.......+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            34557899999999999999999953   21100                            000112233333334444


Q ss_pred             eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239           65 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF  144 (170)
Q Consensus        65 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~  144 (170)
                      + .++.+.++||||+.+|       ...+.    +....+|++++|+++.+++..+..+.+..+... +-   +++++++
T Consensus        86 ~-~~~~~~iiD~PGH~df-------v~~~~----~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-gv---~~iiv~v  149 (222)
T d1zunb3          86 T-AKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GI---KHIVVAI  149 (222)
T ss_dssp             C-SSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CEEEEEE
T ss_pred             c-cceEEEEEeccchhhh-------hhhhc----cccccCceEEEEeccccCcccchHHHHHHHHHc-CC---CEEEEEE
Confidence            4 6788999999999863       23333    345677999999999999999988777655553 22   4799999


Q ss_pred             EcCCCCCCCh
Q 046239          145 TGGDYLEDNE  154 (170)
Q Consensus       145 tk~D~~~~~~  154 (170)
                      ||+|.++.+.
T Consensus       150 NK~D~~~~~~  159 (222)
T d1zunb3         150 NKMDLNGFDE  159 (222)
T ss_dssp             ECTTTTTSCH
T ss_pred             Eccccccccc
Confidence            9999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.64  E-value=2.8e-15  Score=106.29  Aligned_cols=116  Identities=28%  Similarity=0.293  Sum_probs=85.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhh---CCcccc----ccC---------CCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239           20 RTVVLLGRTGNGKSATGNSIL---GRKAFK----ASA---------GSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS   83 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~---~~~~~~----~~~---------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (170)
                      ++|+++|..|+|||||+.+|+   |.....    .+.         ...+.|.......+.| ++..+.++||||+.+| 
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF-   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF-   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG-
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhh-
Confidence            579999999999999999885   222111    011         1133455556667777 8899999999999974 


Q ss_pred             CCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                            ..+....+    .-+|.+++|+|+.++...+....++.+.+.-     .|.++++||+|....
T Consensus        81 ------~~e~~~al----~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~-----~p~~i~iNk~D~~~~  134 (267)
T d2dy1a2          81 ------VGEIRGAL----EAADAALVAVSAEAGVQVGTERAWTVAERLG-----LPRMVVVTKLDKGGD  134 (267)
T ss_dssp             ------HHHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHTT-----CCEEEEEECGGGCCC
T ss_pred             ------hhhhhhhh----cccCceEEEeeccCCccchhHHHHHhhhhcc-----ccccccccccccccc
Confidence                  33444333    3449999999999999999999998888752     489999999998543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=4.2e-16  Score=106.92  Aligned_cols=119  Identities=8%  Similarity=0.125  Sum_probs=72.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .++|+|+|++|+|||||+|+|++.....      ..|.......+.+ .+..+.++||||+...       ...+.....
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~------~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~-------~~~~~~~~~   68 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP------TVVSQEPLSAADY-DGSGVTLVDFPGHVKL-------RYKLSDYLK   68 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC------BCCCSSCEEETTG-GGSSCEEEECCCCGGG-------THHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC------eEEecceEEEEEe-CCeEEEEEecccccch-------hhHHHHHHH
Confidence            4689999999999999999999865421      1221122222323 5678899999998752       122333333


Q ss_pred             hccCCccEEEEEEeCCCCCC--HHHHHHH----HHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFS--QEEEAAV----HRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~--~~~~~~~----~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ......+.+++++++.....  ......+    ..+.......  .|+++|+||+|+....
T Consensus        69 ~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          69 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTAR  127 (209)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTCC
T ss_pred             HHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhcc--CCeEEEEEeecccccC
Confidence            34455578888888752221  1222222    2223322222  5899999999998763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.64  E-value=3.8e-15  Score=99.42  Aligned_cols=118  Identities=16%  Similarity=0.149  Sum_probs=79.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .++..+|+++|++|+|||||++++++......     ..|.......... ....+.++|+||...           ...
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-----------~~~   71 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRP   71 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-----EEETTEEEEEEEE-TTEEEEEEEESCCGG-----------GHH
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-----cceeeeeEEEeec-cceeeEEecCCCcch-----------hhh
Confidence            34568999999999999999999987654322     1222222333333 677899999999875           234


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      ........++++++|+|+++.-+...  ..+++......  ....|++++.||+|+.+.
T Consensus        72 ~~~~~~~~~~~ii~v~D~s~~~~~~~--~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~  128 (173)
T d1e0sa_          72 LWRHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLPDA  128 (173)
T ss_dssp             HHGGGTTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             HHHhhhcccceEEEEEecccchhHHH--HHHHHHHHhhhcccccceeeeeeeccccccc
Confidence            45567889999999999974333222  22333333321  223599999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=2.2e-15  Score=102.42  Aligned_cols=120  Identities=17%  Similarity=0.155  Sum_probs=75.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      -.+|+|+|.+|+|||||++.+++...........+.+...  ..+... ....+.+|||||...+...           +
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~--~~i~~~~~~~~l~i~Dt~G~e~~~~~-----------~   72 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKI--KTVELDGKTVKLQIWDTAGQERFRTI-----------T   72 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEE--EEEEETTEEEEEEEECCTTTTTTTCC-----------C
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEE--EEEEEeeEEEEEEEEECCCchhhHHH-----------H
Confidence            4689999999999999999998655332222222222222  222221 2346788999998865322           2


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ..+...+|++++|+|+++..+... ......+.+.....  .|+++|.||+|..+..
T Consensus        73 ~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~  127 (194)
T d2bcgy1          73 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKR  127 (194)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTC
T ss_pred             HHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCC--ceEEEEEecccccccc
Confidence            245678899999999974433333 23334444433323  4999999999987653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1e-15  Score=101.83  Aligned_cols=117  Identities=21%  Similarity=0.099  Sum_probs=66.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++.+++...... . +......  ...+... ....+.+|||||...+.           ....
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~-~~~~~~~--~~~i~~~~~~~~l~i~D~~g~e~~~-----------~~~~   66 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-A-EAAGHTY--DRSIVVDGEEASLMVYDIWEQDGGR-----------WLPG   66 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEE--EEEEEETTEEEEEEEEECC------------------CHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-C-Ceeeeee--cceeeccccccceeeeecccccccc-----------eecc
Confidence            4799999999999999999998654221 1 1111111  1122221 23467789999987532           2233


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .++..+|++++|+|++++-+... ..++..+..... ....|+++|.||+|+...
T Consensus        67 ~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~  120 (168)
T d2gjsa1          67 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS  120 (168)
T ss_dssp             HHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGG
T ss_pred             cchhhhhhhceeccccccccccccccccchhhcccc-cccceEEEeecccchhhh
Confidence            45678899999999985433333 233444443322 222489999999997654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=7.8e-16  Score=101.98  Aligned_cols=118  Identities=21%  Similarity=0.135  Sum_probs=72.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|.+|+|||||++++++.........+.+.......... ......+.++||+|..++.....           .
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~-----------~   70 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITK-----------A   70 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCH-----------H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeee-cCceeeeeeeccCCccchhhhhh-----------h
Confidence            57999999999999999999865432222222222221111111 11134678999999886533222           2


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++++++|+|+.+.-+... ..+++.+.+..+   ..|+++|.||+|+.+.
T Consensus        71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~iilVgnK~Dl~~~  121 (164)
T d1z2aa1          71 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDD  121 (164)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGG
T ss_pred             hhccCceEEEEEeccchhhhhhcccccccccccCC---CceEEEeeccCCcccc
Confidence            3567899999999974433332 233444444333   2489999999998754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-15  Score=101.77  Aligned_cols=117  Identities=21%  Similarity=0.190  Sum_probs=74.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|.+|+|||||++.+++...........+.+  ........ .+  ..+.++|++|...+.....          
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~~----------   71 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE--FATRSIQV-DGKTIKAQIWDTAGQERYRRITS----------   71 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCE--EEEEEEEE-TTEEEEEEEEECSSGGGTTCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccce--eeeEEEEE-CCEEEEEEecccCCcHHHHHHHH----------
Confidence            589999999999999999998765433322222222  22222333 33  3678999999875432221          


Q ss_pred             HhccCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQE-EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       .....++++++|++.++.-+.. ...++..+.+.....  .|+++|.||+|+.+.
T Consensus        72 -~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~--~piilvgnK~Dl~~~  124 (175)
T d2f9la1          72 -AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHL  124 (175)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG
T ss_pred             -HHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCC--CcEEEEEeeeccccc
Confidence             2346789999999997442222 234555555554433  499999999998754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.3e-15  Score=101.83  Aligned_cols=119  Identities=17%  Similarity=0.149  Sum_probs=74.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|.+|+|||||++.+++.............+.......... ....+.+|||||...           +......
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~   73 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG-KYVKLQIWDTAGQER-----------FRSVTRS   73 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETT-EEEEEEEEEECCSGG-----------GHHHHHT
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecC-cceeEEEEECCCchh-----------hhhhHHH
Confidence            6799999999999999999986543222222222222211111111 234678999999764           3334556


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+++++++|+|.++.-+... ..++..+.......  .|+++|.||+|....
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~  125 (174)
T d2bmea1          74 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDAD  125 (174)
T ss_dssp             TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred             HhhhCCEEEEEEecccchhHHHHhhhhcccccccCCc--eEEEEEEecccccch
Confidence            7789999999999974322221 23344444433322  599999999997543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.63  E-value=5.9e-15  Score=99.21  Aligned_cols=119  Identities=17%  Similarity=0.129  Sum_probs=77.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      ...+..+|+++|.+|+|||||++.+++....... .+.+    ........ .+..+.++|+||...+..          
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~t~~----~~~~~~~~-~~~~~~i~D~~g~~~~~~----------   76 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG----FNVETLSY-KNLKLNVWDLGGQTSIRP----------   76 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTT----CCEEEEEE-TTEEEEEEEEC----CCT----------
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc----eEEEEEee-CCEEEEEEecccccccch----------
Confidence            4566789999999999999999999876653321 1111    22233344 677899999999986432          


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                       ........++++++|+|.++..+..+  ..+++.+.+..  ....|+++|.||+|+...
T Consensus        77 -~~~~~~~~~~~ii~v~d~~d~~s~~~--~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~  133 (182)
T d1moza_          77 -YWRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA  133 (182)
T ss_dssp             -TGGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             -hHHhhhccceeEEEEeeecccccchh--HHHHHHHHHHhhccCCcceEEEEEeeccccc
Confidence             22245678899999999986655544  22333333221  123599999999998764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3e-15  Score=102.68  Aligned_cols=120  Identities=17%  Similarity=0.145  Sum_probs=70.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +.|+++|++|+|||||+|+|++...... ..+  .+.......+....+..+.++|++|...       .   ....+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~---~~~~~~~   67 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTS--ITDSSAIYKVNNNRGNSLTLIDLPGHES-------L---RFQLLDR   67 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCB-CCC--CSCEEEEEECSSTTCCEEEEEECCCCHH-------H---HHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcc-cCC--eeEEEEEEEEeeeeeeeeeeeecccccc-------c---cchhhhh
Confidence            3689999999999999999998654322 111  1111122222122456789999999853       1   1122334


Q ss_pred             ccCCccEEEEEEeCCCCCCHH--HHHH-HHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQE--EEAA-VHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      +...++++++|+|+.+.....  .... .+.+.+........|++||.||+|+...
T Consensus        68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            556779999999987332211  1111 2222222211222489999999999865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=100.32  Aligned_cols=118  Identities=19%  Similarity=0.126  Sum_probs=74.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++++++..........  .+........... ....+.++|++|...+           .....
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----------~~~~~   67 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT--IGIDFLSKTMYLEDRTIRLQLWDTAGQERF-----------RSLIP   67 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC--CSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------GGGHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccc--eeeeccceeeccCCCceeeeecccCCcchh-----------ccchH
Confidence            37999999999999999999876543222222  2222222222221 2246789999998753           11222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....++++++|++..+..+... ..++..+.......  .|+++|.||+|+.+.
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~  120 (164)
T d1yzqa1          68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADK  120 (164)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGG
T ss_pred             HHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCC--ceEEEEecccchhhh
Confidence            35678899999999974433332 34444444444333  489999999997654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.8e-15  Score=101.10  Aligned_cols=122  Identities=16%  Similarity=0.072  Sum_probs=68.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|.+|+|||||++++++...........+.+.........-.....+.++||+|...+           ......
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----------~~~~~~   71 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF-----------QSLGVA   71 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhh-----------hhHHHH
Confidence            579999999999999999998765432222111111111111111001245788999998642           233345


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      ....++++++|+|.++..+... ..+++.+.......  ...|+++|.||+|+...
T Consensus        72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~  127 (175)
T d1ky3a_          72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  127 (175)
T ss_dssp             CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             HhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence            6788899999999975443332 33444444433321  22489999999997653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.5e-15  Score=98.61  Aligned_cols=116  Identities=18%  Similarity=0.104  Sum_probs=72.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++.+++.........+.+ .  ........ .....+.++|++|...+..           ...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~--~~~~~~~~~~~~~~l~i~D~~g~~~~~~-----------~~~   68 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-E--NYVADIEVDGKQVELALWDTAGLEDYDR-----------LRP   68 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-E--EEEEEEEETTEEEEEEEEEECCSGGGTT-----------TGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-e--eccccccccccceeeeccccCccchhcc-----------cch
Confidence            5789999999999999999987654322221111 1  11111222 1234688999999975432           223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .++.++|++++|+|++++-+...  ..+...+.+ ....  .|+++|.||+|+...
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~--~piilvgnK~Dl~~~  121 (177)
T d1kmqa_          69 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPN--VPIILVGNKKDLRND  121 (177)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTT--SCEEEEEECGGGTTC
T ss_pred             hhcccchhhhhhcccchhHHHHHHHHHHHHHHHH-hCCC--CceEEeeecccccch
Confidence            46788999999999974433222  222333333 2233  499999999998765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6e-15  Score=97.90  Aligned_cols=118  Identities=17%  Similarity=0.116  Sum_probs=71.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++.+++.........+.+...  ........ ....+.++|++|....           .....
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~--~~~~~~~~~~~~~~~~~d~~g~~~~-----------~~~~~   70 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASF--LTKKLNIGGKRVNLAIWDTAGQERF-----------HALGP   70 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEE--EEEEEESSSCEEEEEEEECCCC------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccch--heeeeccCCccceeeeeccCCccee-----------cccch
Confidence            5899999999999999999986554322222222222  22222221 1356789999998752           22333


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++|++++|+|++++-+... ..+++.+.......  .++++|.||+|+...
T Consensus        71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~~  123 (167)
T d1z08a1          71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKE  123 (167)
T ss_dssp             CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGG
T ss_pred             hhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccc--cceeeeccccccccc
Confidence            46788999999999974433332 23334344333233  488999999997654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=8.9e-16  Score=102.58  Aligned_cols=118  Identities=16%  Similarity=0.164  Sum_probs=55.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|.+|+|||||++++++........  +..+.......... .+  ..+.++||||...+.           ...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~-----------~~~   72 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFI--STIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFR-----------TIT   72 (173)
T ss_dssp             EEEEEECCCCC----------------CHH--HHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccC--ccccceEEEEEEEE-CCEEEEEEEEECCCchhhH-----------HHH
Confidence            579999999999999999998754322111  11222233333443 33  456789999987532           223


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ..+...++++++|+|++++.+... ..+...+.......  .|+++|.||+|.....
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~D~~~~~  127 (173)
T d2fu5c1          73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKR  127 (173)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCC
T ss_pred             HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCC--ceEEEEEecccchhhc
Confidence            346788999999999985443332 23334444433333  5899999999987653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.6e-15  Score=99.57  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=72.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|.+|+|||||++++++..........  .+.......... .+  ..+.++|+||...+.           ...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~~~   70 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT--IGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR-----------AVT   70 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTS--CCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC-----------HHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccccc--ccccceeEEEEE-CCEEEEEEEeccCCchhHH-----------HHH
Confidence            57999999999999999999875533222211  222222222323 33  367889999986532           112


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+++++.-+... ..++..+.+.....  .|++++.||+|+...
T Consensus        71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~  124 (166)
T d1z0fa1          71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQ  124 (166)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG
T ss_pred             HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcccc--ceEEEEcccccchhh
Confidence            223456799999999974432222 34445554443333  489999999997544

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.7e-16  Score=102.17  Aligned_cols=115  Identities=17%  Similarity=0.070  Sum_probs=70.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeE--EEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMK--TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      .+|+++|.+|+|||||++++++.......    ..|......  .... .....+.+|||+|...+           ...
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~----~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-----------~~~   68 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY----VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF-----------GGL   68 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCE----EEETTEEEEEEEECBTTCCEEEEEEECTTHHHH-----------SSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccc----ccceecccccccccccccccccccccccccccc-----------cee
Confidence            57999999999999999999876532221    122212222  1211 12346899999997642           222


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+..+++++++|+|++++-+... ..++..+.+...   ..|+++|.||+|+...
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~~  122 (170)
T d1i2ma_          69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR  122 (170)
T ss_dssp             GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC---SCCEEEEEECCCCSCS
T ss_pred             cchhcccccchhhccccccccccchhHHHHHHHhhccC---CCceeeecchhhhhhh
Confidence            3346788999999999985543332 233444433322   3599999999997654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=5.8e-15  Score=103.36  Aligned_cols=127  Identities=20%  Similarity=0.242  Sum_probs=85.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh---CCccc--------------------------cccCCCCceeEEEeeEEEEeeC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL---GRKAF--------------------------KASAGSSGVTITCEMKTTVLKD   67 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~---~~~~~--------------------------~~~~~~~~~t~~~~~~~~~~~~   67 (170)
                      ++..+|+++|..++|||||+..|+   |....                          .......+.|+......+.+ .
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~   82 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P   82 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-S
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-C
Confidence            445799999999999999998884   32110                          00012245666666777777 7


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceE
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFDYM  140 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~  140 (170)
                      ++.+.++||||+.+           +...+.+....+|++++|+++.++       ...+..+.+..... ++-   +++
T Consensus        83 ~~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~-~gv---~~i  147 (239)
T d1f60a3          83 KYQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQL  147 (239)
T ss_dssp             SEEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEE
T ss_pred             CEEEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH-cCC---CeE
Confidence            89999999999997           333333567888999999999743       22334444433333 322   478


Q ss_pred             EEEEEcCCCCCCChhhHHH
Q 046239          141 IVVFTGGDYLEDNEKTLED  159 (170)
Q Consensus       141 ivv~tk~D~~~~~~~~~~~  159 (170)
                      |+++||+|.++.+...+.+
T Consensus       148 iv~iNKmD~~~~d~~~~~~  166 (239)
T d1f60a3         148 IVAVNKMDSVKWDESRFQE  166 (239)
T ss_dssp             EEEEECGGGGTTCHHHHHH
T ss_pred             EEEEECCCCCCCCHHHHHH
Confidence            9999999999876444333

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-14  Score=96.61  Aligned_cols=119  Identities=19%  Similarity=0.138  Sum_probs=71.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +.+|+++|.+|+|||||++++++.........+.+..   ....... .+  ..+.++|++|...+.           ..
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~---~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~~   66 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT---YRQVISC-DKSICTLQITDTTGSHQFP-----------AM   66 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE---EEEEEEE-TTEEEEEEEEECCSCSSCH-----------HH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeec---cccceee-ccccceecccccccccccc-----------cc
Confidence            4689999999999999999999765322212121111   1111222 33  356779999998641           11


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......++++++|+|++++-+... ..++..+.+..+.....|+++|.||+|+...
T Consensus        67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  123 (171)
T d2erxa1          67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS  123 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred             ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccc
Confidence            1123445699999999974333222 3444555554443334589999999997544

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.8e-15  Score=98.25  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=74.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..+|+++|.+|+|||||++.+++...........+.+...  ...... ....+.++|++|...+           ....
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~-----------~~~~   72 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTAGQERY-----------HSLA   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccccccc--ceeeccceEEEEEeccCCCchhh-----------hhhH
Confidence            3589999999999999999998665433323332222222  222221 1346789999998753           1122


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...++++++|+|..+..+... ..+...+.+.....  .|+++|.||+|+...
T Consensus        73 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~  126 (170)
T d1r2qa_          73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANK  126 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred             HHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCC--ceEEeeccccccccc
Confidence            234578899999999874433332 33444444444333  489999999997644

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=4.6e-15  Score=98.49  Aligned_cols=120  Identities=18%  Similarity=0.075  Sum_probs=72.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|.+|+|||||++.+++.........+.............. ....+.++|++|...+.           ....
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~-----------~~~~   71 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN-ELHKFLIWDTAGLERFR-----------ALAP   71 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT-EEEEEEEEEECCSGGGG-----------GGTH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccc-cccceeeeecCCchhhh-----------HHHH
Confidence            46899999999999999999987654322222222222211111111 12346789999987531           1222


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....++++++|+|+.++-+... ..++..+.+....  ..|+++|.||+|+.+.
T Consensus        72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~  124 (167)
T d1z0ja1          72 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDV  124 (167)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGG
T ss_pred             HHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCC--cceEEEecccchhccc
Confidence            34577899999999874322222 2223333333333  3599999999998654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.5e-14  Score=94.76  Aligned_cols=119  Identities=19%  Similarity=0.175  Sum_probs=74.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      +..+|+++|.+|+|||||++++++.........+.+..  . ...... .+  ..+.++||+|...+.....        
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~--~-~~~~~~-~~~~~~l~i~d~~g~~~~~~~~~--------   70 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT--F-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQ--------   70 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEE--E-EEEEEE-TTEEEEEEEEECCCCCTTCCCCG--------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecc--c-ceEEec-CcEEEEeeecccccccccccccc--------
Confidence            45689999999999999999988654322211111111  1 112222 33  3567899999987643322        


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                         .....+|++++|+|++++-+... ..++..+.+..+.. ..|+++|.||+|+...
T Consensus        71 ---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~  124 (167)
T d1xtqa1          71 ---TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHME  124 (167)
T ss_dssp             ---GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGG
T ss_pred             ---hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeeccccccccc
Confidence               35678899999999974433332 23344444443321 2489999999997654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.1e-15  Score=98.44  Aligned_cols=117  Identities=14%  Similarity=0.116  Sum_probs=72.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++++++.............+.  ....... .....+.++|++|...+....           .
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-----------~   70 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMVNIDGKQIKLQIWDTAGQESFRSIT-----------R   70 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE--EEEEEEETTEEEEEEEECCTTGGGTSCCC-----------H
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeecc--ceeeeeeeeeEEEEEeecccCccchhhHH-----------H
Confidence            4799999999999999999886653322221211222  2222222 123467899999987643221           2


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      .....+|++++|++.+++.+... ..++..+.+.....  .|+++|.||+|...
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~--~piilv~nK~D~~~  122 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLES  122 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCC--CeEEEEecCCchhh
Confidence            34567899999999974433332 34455555544333  48999999999653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1e-14  Score=97.32  Aligned_cols=121  Identities=20%  Similarity=0.169  Sum_probs=73.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI   93 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~   93 (170)
                      ..+..+|+++|.+|+|||||++.+++...... ..+...  ......+.. .+  ..+.++|++|..++.....      
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~-~~~t~~--~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~------   72 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSD-YDPTIE--DSYTKICSV-DGIPARLDILDTAGQEEFGAMRE------   72 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-CCTTCC--EEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH------
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcc-cccccc--cceeeEecc-CCeeeeeeccccccccccccccc------
Confidence            34557899999999999999999886553222 111111  111222333 33  3577899999987533221      


Q ss_pred             HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                           .....++++++|+|.++..+... ..++..+.+.... ...|+++|.||+|+...
T Consensus        73 -----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~  126 (173)
T d2fn4a1          73 -----QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQ  126 (173)
T ss_dssp             -----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGG
T ss_pred             -----hhhccceeeeeecccccccccchhhhhhHHHHHHhcc-CCCceEEEEEeechhhc
Confidence                 12345699999999974433332 2334434433221 22489999999997644

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.9e-15  Score=97.03  Aligned_cols=120  Identities=19%  Similarity=0.140  Sum_probs=71.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +..+|+++|.+|+|||||++++++...........+ ..  ....... .....+.++|++|...+.           ..
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~--~~~~~~~~~~~~~l~~~d~~g~~~~~-----------~~   67 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DF--YRKEIEVDSSPSVLEILDTAGTEQFA-----------SM   67 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EE--EEEEEEETTEEEEEEEEECCCTTCCH-----------HH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ee--eeeeeecCcceEeeccccCCCccccc-----------cc
Confidence            357899999999999999999987654322221211 11  1111222 012467789999987531           11


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......++++++|++.+++.+... ..+...+..... ....|+++|.||+|+...
T Consensus        68 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~  123 (167)
T d1kaoa_          68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESE  123 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGG
T ss_pred             hHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhhc
Confidence            1223456699999999974433333 223333333221 223489999999997654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.5e-14  Score=95.14  Aligned_cols=120  Identities=18%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ..+|+++|.+|+|||||++.+++.........+ ............. .+  ..+.+|||||...+           ...
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~-----------~~~   72 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIS-TVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------RSV   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCC-CCSCEEEEEEEEE-TTEEEEEEEEECCCC-----------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccc-eeeeeeEEEEEEe-cCcEEEEEEEECCCchhh-----------HHH
Confidence            368999999999999999998765432221111 1111222222322 33  35779999998752           233


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ......++|++++|+|..++.+... ...+..+......  ..|+++|.||+|..+..
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~~k~d~~~~~  128 (170)
T d2g6ba1          73 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHER  128 (170)
T ss_dssp             --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCC
T ss_pred             HHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCC--CceEEEEEeeechhhcc
Confidence            3456678899999999974433222 2333333333322  24899999999987653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-14  Score=97.18  Aligned_cols=120  Identities=16%  Similarity=0.084  Sum_probs=73.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +..+|+++|.+|+|||||++++++...........  +........... ....+.++||||..+...           .
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~   72 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATI--GVDFKVKTISVDGNKAKLAIWDTAGQERFRT-----------L   72 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCC--SEEEEEEEEEETTEEEEEEEEEECSSGGGCC-----------S
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccce--eecceeEEEEEeccccEEEEEECCCchhhHH-----------H
Confidence            34689999999999999999998765433222222  222222223331 234688999999875321           1


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG--KKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...+..+++++++|+++++.-+..  ....++.+...  .....+++++.||.|....
T Consensus        73 ~~~~~~~~~~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~  128 (177)
T d1x3sa1          73 TPSYYRGAQGVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVGNKIDKENR  128 (177)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHH--THHHHHHHHTTCCSCSCCEEEEEEECTTSSSC
T ss_pred             HHHHHhcCCEEEEEEECCCccccc--cchhhhhhhcccccccceeeEEEeeccccccc
Confidence            123457889999999987432222  22333333321  2333588999999997654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2e-14  Score=96.79  Aligned_cols=121  Identities=14%  Similarity=0.072  Sum_probs=72.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|.+|+|||||++.+++.........+.+.+......... .....+.++|++|........           ..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~-----------~~   70 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLG-----------VA   70 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-SCEEEEEEEEECSSGGGSCSC-----------CG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeC-CceEEEEeeecCCcccccccc-----------cc
Confidence            479999999999999999999755332222222232222222211 123467889999987532222           23


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                      ....+++++++++.++.-+... ..+++.+......  ....|+++|.||+|+.+.
T Consensus        71 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~  126 (184)
T d1vg8a_          71 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR  126 (184)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred             cccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc
Confidence            5678899999999974322222 2334444443321  112489999999997543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.4e-14  Score=95.82  Aligned_cols=132  Identities=14%  Similarity=0.066  Sum_probs=77.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL   99 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .+|+++|.+|+|||||++.+++...........+............ ....+.++|++|....          .......
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~   71 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQLWDTAGQERF----------RKSMVQH   71 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT-EEEEEEEEECCCSHHH----------HTTTHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeec-cceEEEEEeccCchhh----------cccccee
Confidence            5799999999999999999986554333222222222222222211 2456788999987531          1111223


Q ss_pred             ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCCh---hhHHHHhhh
Q 046239          100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE---KTLEDYLGH  163 (170)
Q Consensus       100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~~~~  163 (170)
                      +..++|++++|+|++++-+... ..++..+.+.... ...|+++|.||+|+.....   +..+++.++
T Consensus        72 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~  138 (165)
T d1z06a1          72 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPTDLAQKFADT  138 (165)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             eecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhccchhHHHHHHHHHH
Confidence            4578899999999975433332 2344444443321 1248999999999765422   344445443

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.54  E-value=3.6e-14  Score=96.45  Aligned_cols=122  Identities=16%  Similarity=0.228  Sum_probs=75.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc-CCCCceeEEEeeEE--EE--------------------eeCCceEE
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTITCEMKT--TV--------------------LKDGQVVN   72 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-~~~~~~t~~~~~~~--~~--------------------~~~~~~~~   72 (170)
                      .++..+|+++|..++|||||+|+|+|....... ....+.|.......  ..                    ......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            345568999999999999999999985321110 00111111110000  00                    00123478


Q ss_pred             EEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239           73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        73 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~  151 (170)
                      ++||||+.+           +.....+....+|++++|+++.++. .....+.+..+... +.   .++++++||+|..+
T Consensus        82 ~iDtPGh~~-----------f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~---~~iiv~inK~D~~d  146 (195)
T d1kk1a3          82 FIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVD  146 (195)
T ss_dssp             EEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred             eeccchhhh-----------hhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cC---ccceeeeecccchh
Confidence            999999863           4444445667789999999998775 44445555544443 22   36899999999887


Q ss_pred             C
Q 046239          152 D  152 (170)
Q Consensus       152 ~  152 (170)
                      .
T Consensus       147 ~  147 (195)
T d1kk1a3         147 K  147 (195)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=1.5e-14  Score=95.81  Aligned_cols=117  Identities=15%  Similarity=0.164  Sum_probs=70.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|.+|+|||||++++++.........+.+.  ......+.. .+  ..+.++||||...+....           
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~--~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~~-----------   68 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI--DFKIKTVDI-NGKKVKLQIWDTAGQERFRTIT-----------   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------C--CEEEEEEES-SSCEEEEEEECCTTGGGTSCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccce--eEEEEEEEE-CCEEEEEEEEECCCchhhHHHH-----------
Confidence            57999999999999999999876543222222221  222233333 33  356689999987543221           


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...++++++|+|.+++-+.... .....+......  ..+++++.+|.|....
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~~~~k~d~~~~  122 (166)
T d1g16a_          69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR  122 (166)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTC
T ss_pred             HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccC--cceeeeecchhhhhhh
Confidence            1345778999999999854333322 222333333222  2488999999997654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7e-14  Score=94.20  Aligned_cols=119  Identities=18%  Similarity=0.066  Sum_probs=72.9

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ..-.+|+++|.+|+|||||++.++..........+.. .  ......... ....+.+||++|...+....         
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~--~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~---------   74 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-D--HYAVSVTVGGKQYLLGLYDTAGQEDYDRLR---------   74 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-C--CEEEEEESSSCEEEEEEECCCCSSSSTTTG---------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-e--eeeEEEeeCCceEEeecccccccchhhhhh---------
Confidence            3446899999999999999999886543222111111 1  111112221 12457799999997643222         


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                        ......+|++++|+|++++-+...  ..+...+... ...  .|+++|.||+|+.+.
T Consensus        75 --~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~--~~~ilvgnK~Dl~~~  128 (185)
T d2atxa1          75 --PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPFLLIGTQIDLRDD  128 (185)
T ss_dssp             --GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STT--CCEEEEEECTTSTTC
T ss_pred             --hhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCC--CCeeEeeeccccccc
Confidence              246778999999999985433222  2223333332 222  489999999998764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.54  E-value=1.2e-13  Score=94.60  Aligned_cols=123  Identities=17%  Similarity=0.161  Sum_probs=76.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC-CC-----CceeEEEeeEEEE----------------------eeC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA-GS-----SGVTITCEMKTTV----------------------LKD   67 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~-~~-----~~~t~~~~~~~~~----------------------~~~   67 (170)
                      .++..+|+++|..++|||||+++|++........ ..     .............                      ...
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            3556799999999999999999999743211110 00     0000000000000                      001


Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEc
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTG  146 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk  146 (170)
                      .+.+.++||||+.+           +..........+|++++|+++.+++ ..+.++.+..+... +.   ++++|++||
T Consensus        85 ~r~~~iiD~PGH~d-----------f~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i---~~iIV~vNK  149 (205)
T d2qn6a3          85 LRRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNK  149 (205)
T ss_dssp             EEEEEEEECSCHHH-----------HHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TC---CCEEEEEEC
T ss_pred             eEEEEEeccchHHH-----------HHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CC---ceeeecccc
Confidence            24688999999975           3333445567889999999998886 55556566555543 22   488999999


Q ss_pred             CCCCCCC
Q 046239          147 GDYLEDN  153 (170)
Q Consensus       147 ~D~~~~~  153 (170)
                      +|+.+..
T Consensus       150 ~Dl~~~~  156 (205)
T d2qn6a3         150 VDVVSKE  156 (205)
T ss_dssp             GGGSCHH
T ss_pred             CCCccch
Confidence            9998763

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.54  E-value=1.3e-13  Score=90.16  Aligned_cols=114  Identities=12%  Similarity=0.075  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|++|+|||||+++|++...........     ........ ....+.++|+||....           .......
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~d~~g~~~~-----------~~~~~~~   64 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-----FNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRHY   64 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS-----CCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcccccee-----eEEEEEee-eeEEEEEecCCCcccc-----------hhhhhhh
Confidence            78999999999999999998765422211111     11222333 5678999999998752           2222335


Q ss_pred             cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~  153 (170)
                      ....++++++++..+..+...  ...++.+....  ....|++++.||.|..+..
T Consensus        65 ~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~  117 (160)
T d1r8sa_          65 FQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNAM  117 (160)
T ss_dssp             TTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             hccceeEEEEEEecChHHHHH--HHHHHHHHHHhhcccCceEEEEeecccccccc
Confidence            677899999999975544333  12222222211  2235899999999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.6e-14  Score=92.96  Aligned_cols=120  Identities=23%  Similarity=0.144  Sum_probs=69.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcccccc-CCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+|+++|.+|+|||||++.+++....... ..+.+.....  ..+... ....+.++|+++...     .   .++  ..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~~d~~~~~g-----~---e~~--~~   71 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--RTLMVDGESATIILLDMWENKG-----E---NEW--LH   71 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEE--EEEEETTEEEEEEEECCTTTTH-----H---HHH--HH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecce--eeeccCCceeeeeeeccccccc-----c---ccc--cc
Confidence            58999999999999999999976532221 1111111111  122220 123467899886542     0   112  23


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+...+|++++|+|+++.-+... ..+...+....+ ....|+++|.||+|+...
T Consensus        72 ~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~  126 (172)
T d2g3ya1          72 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRC  126 (172)
T ss_dssp             HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGG
T ss_pred             cccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEecccccccc
Confidence            446789999999999974433222 222232332211 123599999999997654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.5e-13  Score=91.00  Aligned_cols=131  Identities=15%  Similarity=0.161  Sum_probs=72.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   94 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~   94 (170)
                      +....++|+++|++|+|||||+|+|++..........  .+............+......++++................
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT--PGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeeccc--ccceeeccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence            3556789999999999999999999987643332211  12122222222213444444444444433223332333333


Q ss_pred             HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ............++.+.+............+..+....     .+.++++||+|+++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~k~D~~~~  142 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSN-----IAVLVLLTKADKLAS  142 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSCH
T ss_pred             hhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhcc-----ccccchhhhhhccCH
Confidence            33333445556677777777777777777777666542     489999999999876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=96.10  Aligned_cols=120  Identities=17%  Similarity=0.134  Sum_probs=72.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|.+|+|||||++++++...........+..  .............+.++|++|...+           .....
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~~~~~~-----------~~~~~   69 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS--YRKQVVIDGETCLLDILDTAGQEEY-----------SAMRD   69 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEE--EEEEEEETTEEEEEEEEEECCCGGG-----------HHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCcccee--eccceeeeceeeeeeeeeccCcccc-----------ccchh
Confidence            4689999999999999999999765433222222211  1111111112345788999999853           11112


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....++++++|++.+++.+.+. ..++..+.+..... ..|+++|.||+|+...
T Consensus        70 ~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~  123 (166)
T d1ctqa_          70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLAAR  123 (166)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCSCC
T ss_pred             hhhhcccccceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccccc
Confidence            23456699999999975433332 34444455443221 2489999999997643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.5e-14  Score=92.10  Aligned_cols=119  Identities=20%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|.+|+|||||++.+++.........+.+..  .............+.+||++|...+.        ...    
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~--~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~----   67 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST--YRHQATIDDEVVSMEILDTAGQEDTI--------QRE----   67 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE--EEEEEEETTEEEEEEEEECCCCCCCH--------HHH----
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecc--ccccccccccceEEEEeecccccccc--------cch----
Confidence            4689999999999999999999755322212221211  11111111112467899999987531        111    


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEA-AVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....++++++|+|++++.+..... +...+..... ....|+++|.||+|+...
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~  121 (168)
T d2atva1          68 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHS  121 (168)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGG
T ss_pred             hhhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhh
Confidence            1234569999999998553333322 2222222222 223599999999997543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.5e-14  Score=92.56  Aligned_cols=131  Identities=20%  Similarity=0.120  Sum_probs=78.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      -.+|+++|.+|+|||||++.+++.........+.+.+.  ....... .+  ..+.++|++|...           ....
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~i~d~~g~~~-----------~~~~   71 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF--LNKDLEV-DGHFVTMQIWDTAGQER-----------FRSL   71 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEE--EEEEEEE-TTEEEEEEEEECCCCGG-----------GHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeee--eeeeeee-cCceeeEeeecccCcce-----------ehhh
Confidence            35799999999999999999986543222222222222  2222222 22  4567999999864           2333


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc--ccceEEEEEEcCCCCCCC--hhhHHHHhhh
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKK--IFDYMIVVFTGGDYLEDN--EKTLEDYLGH  163 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~--~~~~~~~~~~  163 (170)
                      .......+++++++++.++..+-.. ..+++.+.+.....  ...|+++|.||+|+.+..  .+..+++.++
T Consensus        72 ~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~  143 (174)
T d1wmsa_          72 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD  143 (174)
T ss_dssp             HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH
T ss_pred             hhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH
Confidence            4456788899999999874433322 33444444443221  124899999999975431  1455566654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=4.5e-14  Score=93.83  Aligned_cols=121  Identities=21%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      |..+|+++|.+|+|||||++.+++...........+ ....  ..... .....+.+||++|.........         
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~--~~~~~~~~~~~~~i~d~~g~~~~~~~~~---------   70 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYL--KHTEIDNQWAILDVLDTAGQEEFSAMRE---------   70 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC-EEEE--EEEEETTEEEEEEEEECCSCGGGCSSHH---------
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCccee-eccc--cccccccccccccccccccccccccchh---------
Confidence            357899999999999999999987543222111111 1111  11222 1234677999999986432211         


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                        .....+|++++|+|++++-+... ..++..+.+.... ...|++++.||+|+....
T Consensus        71 --~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~  125 (169)
T d1x1ra1          71 --QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLR  125 (169)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTC
T ss_pred             --hhhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhc
Confidence              23345699999999985433332 3444555444332 225899999999987653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=3.6e-14  Score=94.31  Aligned_cols=118  Identities=19%  Similarity=0.132  Sum_probs=72.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++.+++...........+..  ......... ....+.++|++|.....           ....
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~--~~~~~i~~~~~~~~l~i~d~~g~~~~~-----------~~~~   70 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA--FLTQRVTINEHTVKFEIWDTAGQERFA-----------SLAP   70 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEETTEEEEEEEEEECCSGGGG-----------GGHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccce--eeccccccccccccccccccCCchhHH-----------HHHH
Confidence            589999999999999999988765433322222222  122222221 12468899999987521           1122


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|..++.+.... .++..+......  ..+++++.||+|+.+.
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~v~nk~d~~~~  123 (170)
T d1ek0a_          71 MYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDMLQE  123 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGS
T ss_pred             HHHhccceEEEEEeCCcccchhhhhhhhhhhcccccc--ccceeeeecccccccc
Confidence            356788999999999854333332 222233332222  3589999999997543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.51  E-value=4.2e-14  Score=93.86  Aligned_cols=118  Identities=19%  Similarity=0.153  Sum_probs=68.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      -.+|+++|.+|+|||||++++++.........+.+..  .. ..... .+  ..+.++|++|..++           ...
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~--~~-~~~~~-~~~~~~l~i~d~~g~~~~-----------~~~   68 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS--YR-KKVVL-DGEEVQIDILDTAGQEDY-----------AAI   68 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE--EE-EEEEE-TTEEEEEEEEECCC---C-----------HHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccc--cc-ccccc-ccccccccccccccccch-----------hhh
Confidence            3589999999999999999988654322212121111  11 11222 33  46778999999863           111


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .......++++++|++..+..+... ..+++.+.+.... ...|+++|.||+|+...
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~  124 (168)
T d1u8za_          69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK  124 (168)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGG
T ss_pred             hhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEecccccccc
Confidence            1223345699999999975433332 2344444443321 22489999999997543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.1e-14  Score=94.70  Aligned_cols=119  Identities=20%  Similarity=0.140  Sum_probs=67.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      ...+|+++|.+|+|||||++++++...........+ .  ........ .+  ..+.++|++|..++.   .        
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~--~~~~~~~~-~~~~~~~~~~d~~g~~~~~---~--------   68 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-D--SYTKQCVI-DDRAARLDILDTAGQEEFG---A--------   68 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-E--EEEEEEEE-TTEEEEEEEEECC----CC---H--------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-c--ceeeeeee-ccccccccccccccccccc---c--------
Confidence            346899999999999999999886543222121211 1  11122222 22  367899999998642   1        


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ........+|++++|+|.++..+... ..++..+.+.... ...|+++|.||+|+...
T Consensus        69 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~  125 (171)
T d2erya1          69 MREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-DEFPMILIGNKADLDHQ  125 (171)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCSEEEEEECTTCTTS
T ss_pred             cccccccccceEEEeeccccccchhhHHHHhHHHHhhccc-CCCCEEEEEeccchhhh
Confidence            11122345699999999874433322 2333333333222 23589999999997644

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.9e-14  Score=94.01  Aligned_cols=118  Identities=17%  Similarity=0.001  Sum_probs=72.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      +..+|+++|.+|+|||||++.+++.........+.+..   ....... .....+.++|++|...+...           
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~---~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------   69 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN---YSANVMVDGKPVNLGLWDTAGQEDYDRL-----------   69 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE---EEEEEEETTEEEEEEEECCCCSGGGTTT-----------
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeec---eeeeeeccCcceEEEeecccccccchhh-----------
Confidence            34689999999999999999998765322222221111   1111111 12345678999998754222           


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ...++..+|++++|+|+++.-+....  .+...+... ..  ..|+++|.||+|+...
T Consensus        70 ~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~--~~piilvgnK~Dl~~~  124 (183)
T d1mh1a_          70 RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CP--NTPIILVGTKLDLRDD  124 (183)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TSCEEEEEECHHHHTC
T ss_pred             hhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CC--CCcEEEEeecccchhh
Confidence            22457789999999999744332221  233333332 22  2499999999997655

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.50  E-value=3.7e-13  Score=89.56  Aligned_cols=128  Identities=13%  Similarity=0.085  Sum_probs=76.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ++..+|+++|.+|+|||||+++|.+......... .+    ........ ....+.++|+++.......           
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~-~~----~~~~~~~~-~~~~~~~~d~~~~~~~~~~-----------   75 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IG----SNVEEIVI-NNTRFLMWDIGGQESLRSS-----------   75 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SC----SSCEEEEE-TTEEEEEEECCC----CGG-----------
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccc-cc----eeEEEEee-cceEEEEeccccccccccc-----------
Confidence            4568999999999999999999998765332111 11    12222333 5778899999988653211           


Q ss_pred             HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh-hhHHHHh
Q 046239           97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE-KTLEDYL  161 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-~~~~~~~  161 (170)
                      ........++++++++.++..+....................|+++|.||+|...... ..+.+.+
T Consensus        76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~  141 (177)
T d1zj6a1          76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL  141 (177)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHH
Confidence            1123456789999999975554443222111111112223359999999999876532 3344444

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.4e-14  Score=95.17  Aligned_cols=118  Identities=15%  Similarity=0.072  Sum_probs=70.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-----------CCceEEEEeCCCCCCCCCCchH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-----------DGQVVNVIDTPGLFDSSAGSEF   88 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~l~DtpG~~~~~~~~~~   88 (170)
                      .+|+++|.+|+|||||++.+++..........  .+...........           ....+.++||+|..        
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e--------   75 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITT--VGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE--------   75 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEE--EEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCccCCc--ccceeeEEEEEEecccccccccccceEEeccccCCcch--------
Confidence            68999999999999999999975532211111  1111111111110           12457899999975        


Q ss_pred             HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239           89 VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~  152 (170)
                         ++......+..+++++++|+|+++..+..  ....++.+....  ....|+++|.||+|+...
T Consensus        76 ---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~  136 (186)
T d2f7sa1          76 ---RFRSLTTAFFRDAMGFLLMFDLTSQQSFL--NVRNWMSQLQANAYCENPDIVLIGNKADLPDQ  136 (186)
T ss_dssp             ---HHHHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred             ---hhHHHHHHHHhcCCEEEEEEeccccccce--eeeeccchhhhhccCCCceEEEEeeeccchhh
Confidence               34444555667899999999987432221  223333333221  122478999999997654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7.9e-14  Score=93.50  Aligned_cols=117  Identities=15%  Similarity=0.038  Sum_probs=71.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      -+|+++|.+|+|||||++.++.............   ......... .....+.+||++|...+...           ..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~   68 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF---ENYTASFEIDTQRIELSLWDTSGSPYYDNV-----------RP   68 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE---EEEEEEEECSSCEEEEEEEEECCSGGGTTT-----------GG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee---ecccccccccceEEeecccccccccccccc-----------cc
Confidence            4789999999999999999887554322121111   111122222 12345779999998753221           12


Q ss_pred             hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++|++++|+|+++.-+... ...+..........  .|+++|.||+|+...
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~~~  121 (179)
T d1m7ba_          69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN--TKMLLVGCKSDLRTD  121 (179)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT--CEEEEEEECGGGGGC
T ss_pred             chhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCc--ceEEEEEeccccccc
Confidence            46788999999999974433222 12222222223333  499999999997654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.2e-13  Score=91.34  Aligned_cols=116  Identities=21%  Similarity=0.100  Sum_probs=71.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .+|+++|.+|+|||||++.+++.........+.+   ......... .....+.+||++|..++..           ...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~---~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-----------~~~   69 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF---DNYAVTVMIGGEPYTLGLFDTAGQEDYDR-----------LRP   69 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE---EEEEEEEEETTEEEEEEEEEECCSGGGTT-----------TGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee---eecceeEeeCCceeeeeccccccchhhhh-----------hhh
Confidence            5899999999999999999987653222121111   111111222 1123678999999976422           223


Q ss_pred             hccCCccEEEEEEeCCCCCCHHHH-H-HHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEE-A-AVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..+.++|++++|+|++++-+.... . +...+.. ....  .|+++|.||+|+...
T Consensus        70 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~--~~i~lvgnK~Dl~~~  122 (191)
T d2ngra_          70 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPK--TPFLLVGTQIDLRDD  122 (191)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTT--CCEEEEEECGGGGGC
T ss_pred             hcccccceeecccccchHHHHHHHHHHHHHHHhh-cCCC--CceEEEecccccccc
Confidence            467789999999999854332222 1 2222222 2222  489999999997654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.6e-14  Score=93.52  Aligned_cols=119  Identities=18%  Similarity=0.119  Sum_probs=72.4

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..+|+++|.+|+|||||++.++............+..  . ...... .....+.++|++|.......           .
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~--~-~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~   68 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS--Y-RKQVEVDCQQCMLEILDTAGTEQFTAM-----------R   68 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEE--E-EEEEESSSCEEEEEEEEECSSCSSTTH-----------H
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc--c-ceeEEeeeeEEEeccccccCccccccc-----------c
Confidence            4689999999999999999998765432222221111  1 111222 12345889999999864211           1


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ......+|++++|+|++++.+... ..++..+.+... ....|+++|.||+|+...
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~~p~ilvgnK~Dl~~~  123 (167)
T d1c1ya_          69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE  123 (167)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGG
T ss_pred             cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcC-CCCCeEEEEEEecCcccc
Confidence            123445699999999975433332 234444444332 123489999999998654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.4e-13  Score=91.91  Aligned_cols=120  Identities=21%  Similarity=0.299  Sum_probs=72.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH--
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI--   97 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~--   97 (170)
                      ..|+++|.+|+|||||+|+|+|........  ...+...............+.++|+++....      .........  
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~   77 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSR--KAQTTRHRIVGIHTEGAYQAIYVDTPGLHME------EKRAINRLMNK   77 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCC--CSSCCSSCEEEEEEETTEEEEEESSSSCCHH------HHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecc--CCCceEEEEEeeeecCCceeEeecCCCceec------chhhhhhhhhh
Confidence            358999999999999999999976543322  2233323322333326677788999998741      111111111  


Q ss_pred             --HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           98 --GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                        ......+++++++.+.. ............+.+.     ..|.++|+||+|.+...
T Consensus        78 ~~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~-----~~~~i~v~~k~d~~~~~  129 (179)
T d1egaa1          78 AASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREG-----KAPVILAVNKVDNVQEK  129 (179)
T ss_dssp             CTTSCCCCEEEEEEEEETT-CCCHHHHHHHHHHHSS-----SSCEEEEEESTTTCCCH
T ss_pred             ccccchhhcceeEEEEecC-ccchhHHHHHHHhhhc-----cCceeeeeeeeeccchh
Confidence              11334567788888876 3334433333333321     24889999999988774

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.45  E-value=2.1e-13  Score=94.53  Aligned_cols=119  Identities=23%  Similarity=0.238  Sum_probs=73.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC---Cccc--------------------------cccCCCCceeEEEeeEEEEeeCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG---RKAF--------------------------KASAGSSGVTITCEMKTTVLKDG   68 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~---~~~~--------------------------~~~~~~~~~t~~~~~~~~~~~~~   68 (170)
                      +..+|+++|.-++|||||+.+|+.   ....                          .......+.+.......+.+ .+
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CC
Confidence            457899999999999999988852   1100                          01122344555555566666 78


Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHH-------HHHHHHHHHHHhcccccceEE
Q 046239           69 QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE-------EEAAVHRLPTLFGKKIFDYMI  141 (170)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~i  141 (170)
                      ..+.++||||+.+           +..........+|++++|+++.++...+       ..+.+..... ++.   .+++
T Consensus        81 ~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~---~~iI  145 (224)
T d1jnya3          81 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLI  145 (224)
T ss_dssp             CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCE
T ss_pred             ceeEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCC---CceE
Confidence            8999999999997           3333335667789999999998764322       2222222222 222   4789


Q ss_pred             EEEEcCCCCCC
Q 046239          142 VVFTGGDYLED  152 (170)
Q Consensus       142 vv~tk~D~~~~  152 (170)
                      +++||+|+...
T Consensus       146 v~iNK~D~~~~  156 (224)
T d1jnya3         146 VAVNKMDLTEP  156 (224)
T ss_dssp             EEEECGGGSSS
T ss_pred             EEEEcccCCCc
Confidence            99999998753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=3.8e-13  Score=98.23  Aligned_cols=116  Identities=21%  Similarity=0.269  Sum_probs=76.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhh---CCcccc-----------ccCCCCceeEEEeeEEEEee---------------CCc
Q 046239           19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK-----------ASAGSSGVTITCEMKTTVLK---------------DGQ   69 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~---~~~~~~-----------~~~~~~~~t~~~~~~~~~~~---------------~~~   69 (170)
                      -++|+++|..++|||||+.+|+   |.....           ......+.|.........+.               ...
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            3569999999999999999985   221100           00111233333333333221               224


Q ss_pred             eEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCC
Q 046239           70 VVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDY  149 (170)
Q Consensus        70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~  149 (170)
                      .+.++||||+.+|.       .+....    ..-+|.+++|+|+.+++..+....++...+.   +  .|.++++||+|.
T Consensus        97 ~inliDtPGh~dF~-------~ev~~a----l~~~D~allVVda~eGv~~qT~~~~~~a~~~---~--~p~i~viNKiDr  160 (341)
T d1n0ua2          97 LINLIDSPGHVDFS-------SEVTAA----LRVTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKVDR  160 (341)
T ss_dssp             EEEEECCCCCCSSC-------HHHHHH----HHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECHHH
T ss_pred             EEEEEcCCCcHHHH-------HHHHHH----HhhcCceEEEEecccCcchhHHHHHHHHHHc---C--CCeEEEEECccc
Confidence            58899999999863       233332    2345999999999999999998888876664   2  499999999996


Q ss_pred             C
Q 046239          150 L  150 (170)
Q Consensus       150 ~  150 (170)
                      .
T Consensus       161 ~  161 (341)
T d1n0ua2         161 A  161 (341)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-13  Score=90.58  Aligned_cols=112  Identities=22%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      +..+|+++|.+|+|||||++++++...... . ...... . ...+.. .+  ..+.++||+|....         .   
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~-~t~~~~-~-~~~i~v-~~~~~~l~i~Dt~g~~~~---------~---   66 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-E-KTESEQ-Y-KKEMLV-DGQTHLVLIREEAGAPDA---------K---   66 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-C-CSSCEE-E-EEEEEE-TTEEEEEEEEECSSCCCH---------H---
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-C-Ccccee-E-EEEeec-CceEEEEEEeeccccccc---------c---
Confidence            458999999999999999999987654221 1 111111 1 112222 33  45788999998751         1   


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccceEEEEEEcCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKK-IFDYMIVVFTGGDYL  150 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~  150 (170)
                          +...+|++++|+|++++-+... ..+.+++....... ...|+++|.||.|.-
T Consensus        67 ----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d  119 (175)
T d2bmja1          67 ----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  119 (175)
T ss_dssp             ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred             ----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence                2334699999999985433332 23344444432211 223899999998853

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.4e-12  Score=85.31  Aligned_cols=114  Identities=10%  Similarity=0.045  Sum_probs=73.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA  100 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~  100 (170)
                      +|+++|++|+|||||+|.|++......     .+|.........+ ......++|+++...+           .......
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~   64 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQA-----------RRLWKDY   64 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEECC-TTCCEEEEECCCSGGG-----------GGGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-----eceeeEeEEEecc-CCeeEEEEeeccchhh-----------hhhHhhh
Confidence            789999999999999999998764322     1222222333333 5678899999988642           1222345


Q ss_pred             cCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ....++++++++..+....... ..+....+. ......|++++.+|.|....
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~~~  116 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNA  116 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSSSC
T ss_pred             hhheeeeeeeccccchhhhhhhhHHHHhhhhh-hccCCceEEEEecccccccc
Confidence            6778999999999755444332 222222222 22334589999999998765

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=2.4e-12  Score=92.65  Aligned_cols=132  Identities=15%  Similarity=0.192  Sum_probs=75.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC-ceeEEEee------------------------------------
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTITCEM------------------------------------   60 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~-~~t~~~~~------------------------------------   60 (170)
                      .-+.|+++|..++|||||+|+|+|......+..+. ...+....                                    
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            34679999999999999999999987533332211 00000000                                    


Q ss_pred             ------------EEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHHHHhccCCcc-EEEEEEeCCCCCCHHHHHHH
Q 046239           61 ------------KTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKCIGLAKGGIH-AVLVVFSARNRFSQEEEAAV  125 (170)
Q Consensus        61 ------------~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~il~v~~~~~~~~~~~~~~~  125 (170)
                                  .....+....+.++|+||+.......  ......+......+...++ ++++|.++...++...  ..
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--~~  182 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--AL  182 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--HH
Confidence                        11122234568999999998643322  2222233343444444444 5666777764554443  23


Q ss_pred             HHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239          126 HRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       126 ~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      ..+.+.-+..  .++++|+||+|.+++.
T Consensus       183 ~~~~~~~~~~--~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         183 KIAKEVDPQG--QRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHHCTTC--SSEEEEEECGGGSCTT
T ss_pred             HHHHHhCcCC--CceeeEEeccccccch
Confidence            3333332122  4899999999998764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.41  E-value=1e-12  Score=95.04  Aligned_cols=140  Identities=16%  Similarity=0.202  Sum_probs=73.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC---ceeEEE-------------------------------------
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVTITC-------------------------------------   58 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~---~~t~~~-------------------------------------   58 (170)
                      -+.|+|+|..++|||||+|+|+|......+..+.   ......                                     
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            3589999999999999999999987533322110   000000                                     


Q ss_pred             -----------------eeEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHHHHhccCCccE-EEEEEeCCCCCC
Q 046239           59 -----------------EMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKCIGLAKGGIHA-VLVVFSARNRFS  118 (170)
Q Consensus        59 -----------------~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-il~v~~~~~~~~  118 (170)
                                       ....+..+....+.++||||+.......  ..........+..+..+++. ++++.+....+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                             0011112223568899999998643221  11222333444444455666 455556543333


Q ss_pred             HHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhh
Q 046239          119 QEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGH  163 (170)
Q Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~  163 (170)
                      ...  ....+.+.-+..  .++++|+||+|.+.... ...+++.+
T Consensus       184 ~~~--~~~~~~~~~~~~--~r~i~Vitk~D~~~~~~-~~~~~l~~  223 (306)
T d1jwyb_         184 NSD--ALQLAKEVDPEG--KRTIGVITKLDLMDKGT-DAMEVLTG  223 (306)
T ss_dssp             TCS--HHHHHHHHCSSC--SSEEEEEECTTSSCSSC-CCHHHHTT
T ss_pred             ccH--HHHHHHHhCcCC--CeEEEEEeccccccchh-HHHHHHhC
Confidence            332  223333332222  48999999999987652 44444443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.40  E-value=4.3e-12  Score=83.28  Aligned_cols=118  Identities=16%  Similarity=0.102  Sum_probs=73.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      +..+|+++|.+|+|||||+|++++.......     .+.......... ....+.++|.++.....           ...
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~   66 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-----PTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PYW   66 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-----cccceeeeeecc-CceEEEEeecccccccc-----------ccc
Confidence            3578999999999999999999987643221     121122222333 67788899999887521           122


Q ss_pred             HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239           98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus        98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~  153 (170)
                      .......+.++++++..+...... ...+....... .....+++++.||.|+....
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iv~nk~Dl~~~~  122 (169)
T d1upta_          67 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAM  122 (169)
T ss_dssp             GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCC
T ss_pred             hhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhh-ccccceEEEEEeeccccccc
Confidence            234567789999999864444433 22222222111 12235899999999988663

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=1.6e-12  Score=91.10  Aligned_cols=120  Identities=20%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh---CCcccc--------------------------ccCCCCceeEEEeeEEEEee
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL---GRKAFK--------------------------ASAGSSGVTITCEMKTTVLK   66 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~---~~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~   66 (170)
                      .++..+|+++|..++|||||+..|+   |.....                          ......+.+.........+ 
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-   99 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-   99 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-
Confidence            3445579999999999999999883   321100                          0011223333334444555 


Q ss_pred             CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccce
Q 046239           67 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQ-------EEEAAVHRLPTLFGKKIFDY  139 (170)
Q Consensus        67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~  139 (170)
                      ....+.++||||+.+|           ..........+|++++|+++.++.-.       +..+.+..+... +-   ++
T Consensus       100 ~~~~i~~iDtPGH~df-----------~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~-~i---~~  164 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-GI---NH  164 (245)
T ss_dssp             SSEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-TC---SS
T ss_pred             ccceeeeecccccccc-----------hhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc-CC---Ce
Confidence            6788999999999974           22222456778999999999765322       334444333332 21   46


Q ss_pred             EEEEEEcCCCCC
Q 046239          140 MIVVFTGGDYLE  151 (170)
Q Consensus       140 ~ivv~tk~D~~~  151 (170)
                      +++++||+|...
T Consensus       165 iiv~iNKmD~~~  176 (245)
T d1r5ba3         165 LVVVINKMDEPS  176 (245)
T ss_dssp             EEEEEECTTSTT
T ss_pred             EEEEEEcCCCCc
Confidence            899999999874

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.37  E-value=1.3e-11  Score=82.10  Aligned_cols=119  Identities=13%  Similarity=0.053  Sum_probs=69.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   95 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~   95 (170)
                      .++..+|+++|++|+|||||+++|++.......     .+.........+ .+....++|+.+.......          
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------   73 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQARRV----------   73 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CCG----------
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCccee-----cccccceeEEEe-cccccccccccchhhhhhH----------
Confidence            456789999999999999999999987653221     111122233333 5667788888888753221          


Q ss_pred             HHHhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           96 CIGLAKGGIHAVLVVFSARNRFSQEEEA-AVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                       ........+.++++++..+........ .+...... ......|++++.||.|....
T Consensus        74 -~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~K~D~~~~  129 (186)
T d1f6ba_          74 -WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD-ETIANVPILILGNKIDRPEA  129 (186)
T ss_dssp             -GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTSCEEEEEECTTSTTC
T ss_pred             -HhhhhcccceeeeeeeccCccchHHHHHHHHHhhcc-cccCCCceEEEEeccCcccc
Confidence             123456778999999987443333321 12111111 11233599999999998765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.26  E-value=8.4e-12  Score=86.15  Aligned_cols=114  Identities=15%  Similarity=0.145  Sum_probs=75.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|.+|+|||||++.+.....    ..    |.......+.+ .+..+.++|+.|....           +..+.
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~p----TiG~~~~~~~~-~~~~~~~~D~~Gq~~~-----------r~~w~   65 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----VL----TSGIFETKFQV-DKVNFHMFDVGGQRDE-----------RRKWI   65 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----CC----CCSCEEEEEEE-TTEEEEEEECCCSTTT-----------TTGGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----CC----CCCeEEEEEEE-CcEEEEEEecCcccee-----------ccchh
Confidence            46899999999999999999863221    11    22223334555 6789999999998753           22334


Q ss_pred             hccCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNR--------FSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~--------~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~  152 (170)
                      .+...+++++++++.++.        -...-.+.++.+...+...  ...|++++.||+|+++.
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            567888999999998621        1111223444444444432  22499999999998755

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=2.1e-11  Score=82.41  Aligned_cols=114  Identities=15%  Similarity=0.067  Sum_probs=69.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      -.+|+++|.+|+|||||++.+....   ...    .|.......+.+ ....+.++|++|...           ....+.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f~~---~~~----pTiG~~~~~~~~-~~~~~~~~D~~gq~~-----------~~~~~~   62 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRIIH---GQD----PTKGIHEYDFEI-KNVPFKMVDVGGQRS-----------ERKRWF   62 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH---SCC----CCSSEEEEEEEE-TTEEEEEEEECC------------------CT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC---CCC----CeeeeEEEEEee-eeeeeeeecccceee-----------eccccc
Confidence            3589999999999999999994211   111    233334445555 788999999999974           233344


Q ss_pred             hccCCccEEEEEEeCCCCCCH--------HHHHHHHHHHHHhcc--cccceEEEEEEcCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQ--------EEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLE  151 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~--------~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~  151 (170)
                      ......++++++++..+....        .......++......  ....|++++.||+|++.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            567788999999998643211        112233333333322  12349999999999753

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.1e-12  Score=91.45  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=28.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|++|||||||++.|+|...+..|
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G   58 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG   58 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCC
Confidence            457789999999999999999999998876554

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.21  E-value=5.2e-11  Score=82.60  Aligned_cols=129  Identities=15%  Similarity=0.087  Sum_probs=74.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEee---EEEEeeCCceEEEEeCCCCCCCCCCchHH---
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM---KTTVLKDGQVVNVIDTPGLFDSSAGSEFV---   89 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~DtpG~~~~~~~~~~~---   89 (170)
                      ..++..++++||||||||||++.|+|...++.|............   ...........++...|.++....-.+..   
T Consensus        26 i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~  105 (240)
T d1g2912          26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFP  105 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHH
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhh
Confidence            456789999999999999999999999876655332221111110   00000023456666677766432211111   


Q ss_pred             --------------------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHH
Q 046239           90 --------------------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPT  130 (170)
Q Consensus        90 --------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~  130 (170)
                                                            ..+.+..+++...+|+++++- ++...++... ..+++.+.+
T Consensus       106 ~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllD-EPt~~LD~~~~~~i~~~l~~  184 (240)
T d1g2912         106 LKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD-EPLSNLDAKLRVRMRAELKK  184 (240)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE-CTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec-CCCcccCHHHHHHHHHHHHH
Confidence                                                  333344445566778776664 3344676664 455555655


Q ss_pred             HhcccccceEEEEEEcC
Q 046239          131 LFGKKIFDYMIVVFTGG  147 (170)
Q Consensus       131 ~~~~~~~~~~ivv~tk~  147 (170)
                      +..+.  ..+++++||.
T Consensus       185 l~~~~--g~tvi~vTHd  199 (240)
T d1g2912         185 LQRQL--GVTTIYVTHD  199 (240)
T ss_dssp             HHHHH--TCEEEEEESC
T ss_pred             HHhcc--CCEEEEEcCC
Confidence            54332  4788888986

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.1e-11  Score=85.71  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=29.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++++||||||||||++.|+|...+..|
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG   55 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG   55 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCC
Confidence            467889999999999999999999999876655

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.19  E-value=1.6e-12  Score=91.31  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=29.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        37 ~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G   70 (253)
T d3b60a1          37 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG   70 (253)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcccCCCcc
Confidence            3567789999999999999999999998876554

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=2.7e-11  Score=83.94  Aligned_cols=127  Identities=16%  Similarity=0.068  Sum_probs=67.9

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch-------
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-------   87 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-------   87 (170)
                      ...++..++++||||||||||++.|+|...++.|..............  . .....++...|+++....-.+       
T Consensus        28 ~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~-~r~ig~v~Q~~~l~~~ltv~enl~~~~~  104 (239)
T d1v43a3          28 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--K-DRNISMVFQSYAVWPHMTVYENIAFPLK  104 (239)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--G-GGTEEEEEC------CCCHHHHHHTTCC
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc--c-cceEEEEeechhhcccchHHHHHHHHHH
Confidence            356778999999999999999999999987665522211110000000  0 123445555555543211111       


Q ss_pred             -------HH---------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHh
Q 046239           88 -------FV---------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLF  132 (170)
Q Consensus        88 -------~~---------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~  132 (170)
                             ..                           .++.+..++.....|+++++-- +...++... ..+++.+.++.
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDE-Pts~LD~~~~~~i~~ll~~l~  183 (239)
T d1v43a3         105 IKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE-PLSNLDAKLRVAMRAEIKKLQ  183 (239)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES-TTTTSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecC-CcccCCHHHHHHHHHHHHHHH
Confidence                   11                           2333344455667787766643 333666664 34555555553


Q ss_pred             cccccceEEEEEEcC
Q 046239          133 GKKIFDYMIVVFTGG  147 (170)
Q Consensus       133 ~~~~~~~~ivv~tk~  147 (170)
                      .+.  ..+++++||.
T Consensus       184 ~~~--g~tii~vTHd  196 (239)
T d1v43a3         184 QKL--KVTTIYVTHD  196 (239)
T ss_dssp             HHH--TCEEEEEESC
T ss_pred             Hhc--CCeEEEEeCC
Confidence            322  3689999984

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.18  E-value=2.5e-11  Score=87.25  Aligned_cols=92  Identities=20%  Similarity=0.181  Sum_probs=64.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC----------------CceEEEEeCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD----------------GQVVNVIDTPGLFD   81 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~   81 (170)
                      .+.+++|||.|++|||||||+|++...+.. ...+.+|..+....+..+.                ...+.++|.||+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~-anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCc-CCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            568899999999999999999997654222 2233344433333333211                23578999999988


Q ss_pred             CCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239           82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR  114 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (170)
                      ......-.+.+++..++    ++|+++.|+++.
T Consensus        88 gA~~g~GLGn~fL~~ir----~~d~lihVV~~f  116 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVR----AVDAIYQVVRAF  116 (296)
T ss_dssp             CCCSSSSSCHHHHHHHT----TCSEEEEEEECC
T ss_pred             ccccccccHHHHHHHhh----ccceeEEEEecc
Confidence            76666667778876655    459999999875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.17  E-value=6.8e-11  Score=82.02  Aligned_cols=130  Identities=12%  Similarity=0.087  Sum_probs=75.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCCCchHH---
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSAGSEFV---   89 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~---   89 (170)
                      ...++..++++||||||||||++.|.|...+..|.................  ......++...|.++....-.+.+   
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~  106 (242)
T d1oxxk2          27 NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP  106 (242)
T ss_dssp             EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGG
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhh
Confidence            356788999999999999999999999987666533222111111111000  023456777777665421111111   


Q ss_pred             --------------------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHH
Q 046239           90 --------------------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPT  130 (170)
Q Consensus        90 --------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~  130 (170)
                                                            .++.+..++....+|+++++- ++...++... .++++.+.+
T Consensus       107 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllD-EPt~~LD~~~~~~i~~~i~~  185 (242)
T d1oxxk2         107 LTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD-EPFSNLDARMRDSARALVKE  185 (242)
T ss_dssp             GTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-STTTTSCGGGHHHHHHHHHH
T ss_pred             hHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeec-CCccCCCHHHHHHHHHHHHH
Confidence                                                  333444556667778776654 3333555553 445555656


Q ss_pred             HhcccccceEEEEEEcC
Q 046239          131 LFGKKIFDYMIVVFTGG  147 (170)
Q Consensus       131 ~~~~~~~~~~ivv~tk~  147 (170)
                      +..+.  ..+++++||.
T Consensus       186 l~~~~--g~tvi~vTHd  200 (242)
T d1oxxk2         186 VQSRL--GVTLLVVSHD  200 (242)
T ss_dssp             HHHHH--CCEEEEEESC
T ss_pred             HHhcc--CCEEEEEECC
Confidence            54332  3689999986

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1e-11  Score=87.04  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=29.8

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++|+|+||||||||++.|+|...+..|
T Consensus        36 ~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G   69 (251)
T d1jj7a_          36 TLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG   69 (251)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcC
Confidence            3567889999999999999999999999876655

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.16  E-value=3.9e-12  Score=88.81  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=30.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA   49 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~   49 (170)
                      ...++..++|+|+||||||||++.|+|...+..|.
T Consensus        24 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~   58 (242)
T d1mv5a_          24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE   58 (242)
T ss_dssp             EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCE
Confidence            35678899999999999999999999998776653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=5.9e-11  Score=79.66  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=71.5

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      +.+|+++|..|+|||||++.+.....+..     +    .....+.. ....+.++||.|...           +...+.
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~-----~----~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~   60 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT-----G----IVETHFTF-KDLHFKMFDVGGQRS-----------ERKKWI   60 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC-----S----EEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc-----c----EEEEEEEe-eeeeeeeeccccccc-----------cccchh
Confidence            46899999999999999999875433211     1    12233444 678899999999975           344445


Q ss_pred             hccCCccEEEEEEeCCCCCCH--------HHHHHHHHHHHHhcc--cccceEEEEEEcCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQ--------EEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYL  150 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~--------~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~  150 (170)
                      .+...++++++|++.++..+.        ............+..  ....|++++.||+|.+
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~  122 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF  122 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhh
Confidence            678899999999998632211        111222222222221  1224999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.16  E-value=2.6e-12  Score=90.21  Aligned_cols=34  Identities=26%  Similarity=0.226  Sum_probs=29.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|++|||||||++.|+|...+..|
T Consensus        40 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G   73 (255)
T d2hyda1          40 SIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG   73 (255)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHhcCCcccc
Confidence            3567889999999999999999999998876654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.14  E-value=4.2e-11  Score=83.38  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++++||||||||||++.|+|...+..|
T Consensus        28 ~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G   61 (240)
T d1ji0a_          28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence            3457889999999999999999999998876654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.14  E-value=3.9e-11  Score=82.63  Aligned_cols=127  Identities=16%  Similarity=0.085  Sum_probs=72.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH-----
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV-----   89 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-----   89 (170)
                      ...++..++++||||||||||++.|+|...+..|........-.....  . .....++...+.++....-.+..     
T Consensus        22 ~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~--~-~r~ig~v~Q~~~l~~~~tV~enl~~~~~   98 (229)
T d3d31a2          22 KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--E-KHDIAFVYQNYSLFPHMNVKKNLEFGMR   98 (229)
T ss_dssp             EECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--H-HHTCEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccch--h-HhcceeeccccccCccccHHHHHHHHHh
Confidence            356788999999999999999999999987665432211111000000  0 12345666666665421111111     


Q ss_pred             ---------------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc
Q 046239           90 ---------------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKK  135 (170)
Q Consensus        90 ---------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~  135 (170)
                                                       .++.+..++....+|.++|+--+ ...++... ..+.+.+.++..+.
T Consensus        99 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEP-ts~LD~~~~~~i~~~l~~l~~~~  177 (229)
T d3d31a2          99 MKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP-LSALDPRTQENAREMLSVLHKKN  177 (229)
T ss_dssp             HHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS-STTSCHHHHHHHHHHHHHHHHHT
T ss_pred             hccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCC-CcCCCHHHHHHHHHHHHHHHhcC
Confidence                                             33444555667778887776433 33666664 34455555543322


Q ss_pred             ccceEEEEEEcC
Q 046239          136 IFDYMIVVFTGG  147 (170)
Q Consensus       136 ~~~~~ivv~tk~  147 (170)
                        ..+++++||.
T Consensus       178 --g~tii~vtHd  187 (229)
T d3d31a2         178 --KLTVLHITHD  187 (229)
T ss_dssp             --TCEEEEEESC
T ss_pred             --CcEEEEEcCC
Confidence              3678888984

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=3.2e-11  Score=87.47  Aligned_cols=88  Identities=18%  Similarity=0.107  Sum_probs=42.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEE----EEe-------------------eCCceEEEEeCC
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKT----TVL-------------------KDGQVVNVIDTP   77 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~----~~~-------------------~~~~~~~l~Dtp   77 (170)
                      .|+++|.|++|||||||+|+|......  ..+.+|.......    .+.                   .....+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~v~--nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVEIA--NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCchh--cCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            689999999999999999999764222  1122222211110    000                   011358899999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239           78 GLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR  114 (170)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  114 (170)
                      |+..........+.+++    .....+|++++|+++.
T Consensus        80 Gli~ga~~g~~~~~~~l----~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHEGRGLGNKFL----DDLRMASALIHVVDAT  112 (319)
T ss_dssp             ---------------CC----CSSTTCSEEEEEEETT
T ss_pred             CcccchhcccchHHHHH----HhhccceEEEEEeccc
Confidence            99864433333333332    3456889999999975

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.5e-10  Score=77.97  Aligned_cols=114  Identities=14%  Similarity=0.089  Sum_probs=73.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..+|+++|..|+|||||++.++.... . ..    .|.......+.. ....+.++|+.|...+           ...+.
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~-~-~~----pTiG~~~~~~~~-~~~~~~~~d~~g~~~~-----------~~~~~   63 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG-S-GV----PTTGIIEYPFDL-QSVIFRMVDVGGQRSE-----------RRKWI   63 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS-S-CC----CCCSCEEEEEEC-SSCEEEEEECCCSTTG-----------GGGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC-C-CC----ceeeEEEEEEec-cceeeeeccccccccc-----------ccccc
Confidence            46899999999999999999975542 1 11    233333444555 6788999999999753           33334


Q ss_pred             hccCCccEEEEEEeCCCCCC--------HHHHHHHHHHHHHhccc--ccceEEEEEEcCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFS--------QEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYL  150 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~--------~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~  150 (170)
                      .....+++++++++..+...        ....+.++.+...+...  ...|++++.||.|+.
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL  125 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHH
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhh
Confidence            56788899999999863211        11122233333333221  224999999999975

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.11  E-value=2.7e-10  Score=77.21  Aligned_cols=33  Identities=18%  Similarity=0.046  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++++||||||||||++.|+|...+..|
T Consensus        24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G   56 (200)
T d1sgwa_          24 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG   56 (200)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcccccCCC
Confidence            456788999999999999999999998776654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.11  E-value=1.1e-10  Score=82.95  Aligned_cols=70  Identities=21%  Similarity=0.315  Sum_probs=45.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV   89 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~   89 (170)
                      ......+++++|.+++|||||+|+|.|......+. .++.|...+...    .+..+.++||||+..+.......
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~-~pG~Tr~~~~i~----~~~~~~l~DTPGi~~p~~~~~~~  177 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVK----VGKELELLDTPGILWPKFEDELV  177 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE----ETTTEEEEECCCCCCSCCCCHHH
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECC-cccccccceEEE----CCCCeEEecCCCccccCCccHHH
Confidence            45567889999999999999999999987655433 345665444332    36789999999998765544433

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=7.8e-11  Score=81.84  Aligned_cols=127  Identities=11%  Similarity=0.028  Sum_probs=71.1

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH-----
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV-----   89 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-----   89 (170)
                      ...++.+++++||||||||||++.|+|...+..|........... ..... .....++.+.++++..-...+..     
T Consensus        24 ~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~-~~~i~~vpq~~~~~~~ltv~e~l~~~~~  101 (238)
T d1vpla_          24 EIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEV-RKLISYLPEEAGAYRNMQGIEYLRFVAG  101 (238)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHH-HTTEEEECTTCCCCTTSBHHHHHHHHHH
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHH-HhhEeEeeeccccCCCccHHHHHHHHHH
Confidence            346788999999999999999999999987665432211110000 00011 23445566666665432111110     


Q ss_pred             ------------------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHh
Q 046239           90 ------------------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLF  132 (170)
Q Consensus        90 ------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~  132 (170)
                                                          .++.+..++....+|.++++- ++..+++... ..+++.+.+..
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD-EPt~gLD~~~~~~i~~~i~~~~  180 (238)
T d1vpla_         102 FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD-EPTSGLDVLNAREVRKILKQAS  180 (238)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE-STTTTCCHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEec-CCCCCCCHHHHHHHHHHHHHHH
Confidence                                                222333335556777776654 4444777765 34455555543


Q ss_pred             cccccceEEEEEEcC
Q 046239          133 GKKIFDYMIVVFTGG  147 (170)
Q Consensus       133 ~~~~~~~~ivv~tk~  147 (170)
                      .+   ..+++++||.
T Consensus       181 ~~---g~tii~~tH~  192 (238)
T d1vpla_         181 QE---GLTILVSSHN  192 (238)
T ss_dssp             HT---TCEEEEEECC
T ss_pred             hc---CCEEEEEeCC
Confidence            22   3688888885

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.09  E-value=3.9e-11  Score=85.51  Aligned_cols=89  Identities=19%  Similarity=0.162  Sum_probs=57.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC----------------CceEEEEeCCCCCCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD----------------GQVVNVIDTPGLFDS   82 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~   82 (170)
                      ..+|+|||.|++|||||||+|++.....  ...+.+|..+....+..+.                .-.+.++|.||+-..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~--~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEA--ANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCcc--ccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            3689999999999999999999865422  1223344333333333211                124779999999875


Q ss_pred             CCCchHHHHHHHHHHHhccCCccEEEEEEeC
Q 046239           83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSA  113 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~  113 (170)
                      .....-.+.+++..++.+    |+++.|+++
T Consensus        80 a~~g~Glg~~FL~~ir~~----d~LihVVr~  106 (278)
T d1jala1          80 ASKGEGLGNKFLANIRET----DAIGHVVRC  106 (278)
T ss_dssp             HHHHGGGTCCHHHHHHTC----SEEEEEEEC
T ss_pred             cccCCCccHHHHHHHHhc----cceEEEeec
Confidence            444444566777766655    999999976

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=5.3e-11  Score=81.64  Aligned_cols=63  Identities=24%  Similarity=0.274  Sum_probs=40.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccC-C-----CCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-G-----SSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~-~-----~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      .+...+++|+||+|||||+|+|.+......+. +     ...+|+....+.  +  .....++||||+-++..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~--l--~~gg~iiDTPG~r~~~l  162 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--F--DFGGYVVDTPGFANLEI  162 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--C--TTSCEEESSCSSTTCCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEE--E--CCCcEEEeCCccccccc
Confidence            35688999999999999999999865433321 1     122333333333  2  23579999999987653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.07  E-value=9.1e-11  Score=80.91  Aligned_cols=34  Identities=24%  Similarity=0.162  Sum_probs=29.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++++|+||||||||++.|+|...+..|
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG   60 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG   60 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEcCCCEEEEECCCCCCcchhhHhccCCCCCCcc
Confidence            4567889999999999999999999998876554

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.05  E-value=9.8e-11  Score=81.06  Aligned_cols=29  Identities=38%  Similarity=0.339  Sum_probs=25.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++++||||||||||++.|+|...+..|
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~G   53 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence            57889999999999999999999876655

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=1.4e-10  Score=80.48  Aligned_cols=34  Identities=15%  Similarity=0.080  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++++|+||||||||++.|.|...+..|
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG   60 (240)
T d3dhwc1          27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG   60 (240)
T ss_dssp             EECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCccccCC
Confidence            4567889999999999999999999998876554

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=7.4e-10  Score=78.67  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=29.0

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ..++..++|+|+||||||||++.|+|...+..|
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G   91 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEG   91 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCcCCCc
Confidence            467789999999999999999999998876654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.99  E-value=5.3e-10  Score=78.45  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=29.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++.+++|+|+||||||||+++|+|...+..|
T Consensus        24 ~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G   57 (258)
T d1b0ua_          24 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG   57 (258)
T ss_dssp             EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCC
Confidence            3467889999999999999999999998876554

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.98  E-value=1e-10  Score=82.06  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS   48 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~   48 (170)
                      ...++..++++||||||||||++.|+|...+..|
T Consensus        26 ~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G   59 (254)
T d1g6ha_          26 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG   59 (254)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCc
Confidence            4567889999999999999999999998876654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.97  E-value=1.6e-09  Score=74.99  Aligned_cols=78  Identities=15%  Similarity=0.085  Sum_probs=44.0

Q ss_pred             ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239           69 QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      ..+.++|+||+.++.     ........+. -....+.+++++++.....................+..-|.++++||+|
T Consensus        95 ~~~~~id~~g~~~~~-----~~~~~~~~~~-~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETF-----LFHEFGVRLM-ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHH-----HHSHHHHHHH-HTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred             cceeeeccccchhHH-----HHHHHHHHHH-hhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccc
Confidence            458899999997521     1111111111 1234567888999875666554332222221111122248999999999


Q ss_pred             CCCC
Q 046239          149 YLED  152 (170)
Q Consensus       149 ~~~~  152 (170)
                      .+..
T Consensus       169 ~~~~  172 (244)
T d1yrba1         169 LLSE  172 (244)
T ss_dssp             GCCH
T ss_pred             cccH
Confidence            9876

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=1.2e-09  Score=74.38  Aligned_cols=129  Identities=16%  Similarity=0.168  Sum_probs=70.0

Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeE----------------EEeeEEEEe------------
Q 046239           14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTI----------------TCEMKTTVL------------   65 (170)
Q Consensus        14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~----------------~~~~~~~~~------------   65 (170)
                      -+..++.+|+++||+|+||||.+-.|+.... ..+....-.+.                .....-+..            
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~   84 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD   84 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHH
Confidence            3456677999999999999999888764321 11110000000                000000000            


Q ss_pred             ------eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhcc----CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 046239           66 ------KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAK----GGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK  135 (170)
Q Consensus        66 ------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~  135 (170)
                            .++..++|+||+|....   ......++........    ..++-.++|+++..+  ..   .+..+...+.. 
T Consensus        85 ~~~~~~~~~~d~ilIDTaGr~~~---d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~---~~~~~~~~~~~-  155 (213)
T d1vmaa2          85 AVAHALARNKDVVIIDTAGRLHT---KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QN---GLVQAKIFKEA-  155 (213)
T ss_dssp             HHHHHHHTTCSEEEEEECCCCSC---HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HH---HHHHHHHHHHH-
T ss_pred             HHHHHHHcCCCEEEEeccccccc---hHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cc---hhhhhhhhccc-
Confidence                  02446899999998763   2333444444443332    236778999998621  22   22333333321 


Q ss_pred             ccceEEEEEEcCCCCCCC
Q 046239          136 IFDYMIVVFTGGDYLEDN  153 (170)
Q Consensus       136 ~~~~~ivv~tk~D~~~~~  153 (170)
                       ...--+++||.|....-
T Consensus       156 -~~~~~lI~TKlDe~~~~  172 (213)
T d1vmaa2         156 -VNVTGIILTKLDGTAKG  172 (213)
T ss_dssp             -SCCCEEEEECGGGCSCT
T ss_pred             -cCCceEEEecccCCCcc
Confidence             13677889999986543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.95  E-value=1.3e-10  Score=79.88  Aligned_cols=62  Identities=26%  Similarity=0.272  Sum_probs=36.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCC------CCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA   84 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (170)
                      ++...+++|+||+|||||+|+|.+......+..      ...+|+......  . .  ...++||||+-++..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~--~-~--gg~iiDTPG~r~~~l  163 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--T-S--GGLVADTPGFSSLEF  163 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE--E-T--TEEEESSCSCSSCCC
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe--c-C--CCEEEECCccccccc
Confidence            456788999999999999999998754333211      112333333332  2 3  367999999987654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.92  E-value=2.7e-09  Score=72.36  Aligned_cols=129  Identities=16%  Similarity=0.081  Sum_probs=67.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC---------Ccee-------EE--EeeEEEE--------------
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---------SGVT-------IT--CEMKTTV--------------   64 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~---------~~~t-------~~--~~~~~~~--------------   64 (170)
                      .++.+|+++||+|+||||.+-.|+.... ..+...         .+..       ..  .......              
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~   82 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQ   82 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHH
Confidence            4567899999999999999977764321 111000         0000       00  0000000              


Q ss_pred             --eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh-ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEE
Q 046239           65 --LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL-AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI  141 (170)
Q Consensus        65 --~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i  141 (170)
                        ...+..+.++||+|........-....++...... ....++-.++|+++..+  ..+...+....+.+     ..--
T Consensus        83 ~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~  155 (207)
T d1okkd2          83 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAV-----GLTG  155 (207)
T ss_dssp             HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHH-----CCSE
T ss_pred             HHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC--chHHHHHHHhhhcc-----CCce
Confidence              00235689999999876432222222223332222 23467788999998733  23322222222222     3567


Q ss_pred             EEEEcCCCCCCC
Q 046239          142 VVFTGGDYLEDN  153 (170)
Q Consensus       142 vv~tk~D~~~~~  153 (170)
                      +++||.|....-
T Consensus       156 lI~TKlDet~~~  167 (207)
T d1okkd2         156 VIVTKLDGTAKG  167 (207)
T ss_dssp             EEEECTTSSCCC
T ss_pred             EEEeccCCCCCc
Confidence            889999986554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.88  E-value=6.3e-09  Score=70.68  Aligned_cols=126  Identities=13%  Similarity=0.080  Sum_probs=64.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEee------------------EEE------E-------
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM------------------KTT------V-------   64 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~------------------~~~------~-------   64 (170)
                      .+.+.+|+++||+|+||||.+-.|+.... ..+...  .-...+.                  .-.      +       
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~kV--~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~   85 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYK-KKGFKV--GLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKR   85 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHH-HTTCCE--EEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCce--EEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHH
Confidence            34567899999999999999988774321 111100  0000000                  000      0       


Q ss_pred             -----eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 046239           65 -----LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY  139 (170)
Q Consensus        65 -----~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (170)
                           ...+..+.++||+|..... .......++.......  +++-+++|+++.....  +...+....+.+     ..
T Consensus        86 a~~~~~~~~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~~--~~~~~~~~~~~~-----~~  155 (211)
T d1j8yf2          86 GVEKFLSEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIGQK--AYDLASKFNQAS-----KI  155 (211)
T ss_dssp             HHHHHHHTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGGG--HHHHHHHHHHHC-----TT
T ss_pred             HHHHhhccCCceEEEecCCcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccCcc--hHHHHhhhhccc-----Cc
Confidence                 0134579999999986432 2223334554444433  4577889999863322  222222222222     24


Q ss_pred             EEEEEEcCCCCCCCh
Q 046239          140 MIVVFTGGDYLEDNE  154 (170)
Q Consensus       140 ~ivv~tk~D~~~~~~  154 (170)
                      --+++||.|....-+
T Consensus       156 ~~lI~TKlDet~~~G  170 (211)
T d1j8yf2         156 GTIIITKMDGTAKGG  170 (211)
T ss_dssp             EEEEEECTTSCSCHH
T ss_pred             ceEEEecccCCCccc
Confidence            557799999876543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=4.2e-09  Score=71.47  Aligned_cols=76  Identities=17%  Similarity=0.175  Sum_probs=43.5

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhcc----CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAK----GGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVV  143 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv  143 (170)
                      +..+.++||+|....   ......++.+......    ..++-.++|+++..+  ..+...+....+.+     ..--++
T Consensus        91 ~~d~ilIDTaGr~~~---d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~lI  160 (211)
T d2qy9a2          91 NIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-----GLTGIT  160 (211)
T ss_dssp             TCSEEEECCCCCGGG---HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHS-----CCCEEE
T ss_pred             CCCEEEeccCCCccc---cHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhcc-----CCceEE
Confidence            346899999998642   2333444444443321    236788999998622  33322222222222     366788


Q ss_pred             EEcCCCCCCC
Q 046239          144 FTGGDYLEDN  153 (170)
Q Consensus       144 ~tk~D~~~~~  153 (170)
                      +||.|....-
T Consensus       161 lTKlDe~~~~  170 (211)
T d2qy9a2         161 LTKLDGTAKG  170 (211)
T ss_dssp             EECCTTCTTT
T ss_pred             EeecCCCCCc
Confidence            9999986554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.76  E-value=2.4e-08  Score=67.62  Aligned_cols=74  Identities=20%  Similarity=0.171  Sum_probs=45.4

Q ss_pred             CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239           68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG  147 (170)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~  147 (170)
                      ...+.++||+|....+   .....++.......  +++-+++|+++..+  ......+....+.+     ..--+++||.
T Consensus        92 ~~d~vlIDTaGr~~~d---~~~~~el~~~~~~~--~~~~~llv~~a~~~--~~~~~~~~~f~~~~-----~~~~~I~TKl  159 (207)
T d1ls1a2          92 ARDLILVDTAGRLQID---EPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVLTKL  159 (207)
T ss_dssp             TCCEEEEECCCCSSCC---HHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHT-----CCCEEEEECG
T ss_pred             cCcceeecccccchhh---hhhHHHHHHHHhhc--CCceEEEEeccccc--hhHHHHHHHHHhhC-----CCCeeEEeec
Confidence            4568999999997632   33445555554433  56788899998533  33333443333333     2456889999


Q ss_pred             CCCCCC
Q 046239          148 DYLEDN  153 (170)
Q Consensus       148 D~~~~~  153 (170)
                      |....-
T Consensus       160 De~~~~  165 (207)
T d1ls1a2         160 DGDARG  165 (207)
T ss_dssp             GGCSSC
T ss_pred             Cccccc
Confidence            986553

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.63  E-value=1.1e-07  Score=62.35  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239           21 TVVLLGRTGNGKSATGNSILGRKAFK   46 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~~~~~   46 (170)
                      +|+|+||||+|||||++.+++...+.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            68999999999999999999865543

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.2e-08  Score=70.34  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=25.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      ..++..++++|+||||||||++.|+|...
T Consensus        22 I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~   50 (231)
T d1l7vc_          22 VRAGEILHLVGPNGAGKSTLLARMAGMTS   50 (231)
T ss_dssp             EETTCEEECBCCTTSSHHHHHHHHHTSCC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            45788999999999999999999999754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.7e-06  Score=60.88  Aligned_cols=66  Identities=27%  Similarity=0.280  Sum_probs=46.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCcc-ccccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSS   83 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~   83 (170)
                      +-.+|+++|+.++|||+|+|.|+|... +..+....++|....++....  .....+.++||.|+.+..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            345899999999999999999998653 223344445665555544433  234579999999998743

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=8.9e-07  Score=57.28  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ++|+++|++|||||||++.|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5899999999999999999974

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.96  E-value=1.6e-06  Score=56.75  Aligned_cols=25  Identities=32%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      -..+|++.|++|+|||||.+.|...
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999999753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.85  E-value=5.4e-06  Score=54.93  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=21.5

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+.+|+|+|++||||||+.+.|+.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999988874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.83  E-value=5.4e-06  Score=52.57  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..|++.|++||||||+.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999998864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=2.2e-05  Score=54.78  Aligned_cols=116  Identities=13%  Similarity=0.113  Sum_probs=65.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC   96 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   96 (170)
                      ....++++||++|+|||+++..|.......  ..+..           . .+..++-+|...+.........+...+...
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~ri~~~--~vp~~-----------l-~~~~i~~l~~~~liag~~~~g~~e~r~~~i  102 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQG--DVPEV-----------M-ADCTIYSLDIGSLLAGTKYRGDFEKRFKAL  102 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHHHT--CSCGG-----------G-TTCEEEECCCC---CCCCCSSCHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHHHHhC--Ccccc-----------c-ccceeEEeeechHhccCccchhHHHHHHHH
Confidence            344678999999999999999988644311  11100           0 344555666666665555556677777666


Q ss_pred             HHhccCCccEEEEEEeCCCCC-----CHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239           97 IGLAKGGIHAVLVVFSARNRF-----SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD  148 (170)
Q Consensus        97 ~~~~~~~~~~il~v~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D  148 (170)
                      +.......++++|+-++..-+     +.......+.|...+..+  .--+|..|-.|
T Consensus       103 ~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg--~i~vIgatT~e  157 (268)
T d1r6bx2         103 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--KIRVIGSTTYQ  157 (268)
T ss_dssp             HHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC--CCEEEEEECHH
T ss_pred             HHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCC--CCeEEEeCCHH
Confidence            666555556677665554211     222455667777666544  23344444433

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.80  E-value=4.9e-06  Score=53.72  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+|+|.|++||||||+.+.|+.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999964

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.80  E-value=8.4e-06  Score=52.84  Aligned_cols=27  Identities=22%  Similarity=0.262  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..++.+|.|+|.+||||||+.+.|...
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999999999888743

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.79  E-value=8.4e-06  Score=52.68  Aligned_cols=26  Identities=19%  Similarity=0.374  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .++.+|+|.|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=7e-06  Score=59.04  Aligned_cols=26  Identities=19%  Similarity=0.084  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+..+|+|.|++|+|||||++.|+.
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            45678999999999999999999973

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.78  E-value=7e-06  Score=53.04  Aligned_cols=23  Identities=13%  Similarity=0.179  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..|+|+|++|||||||++.|...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            46899999999999999988653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=1.1e-05  Score=53.60  Aligned_cols=28  Identities=18%  Similarity=0.334  Sum_probs=23.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +.....+|+|+||+||||||+...|+..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3455789999999999999999998753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=7.6e-06  Score=53.74  Aligned_cols=24  Identities=38%  Similarity=0.450  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +..|+|+||+||||||+++.|...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            467899999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=9.5e-06  Score=52.32  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +.+..++|.|++||||||+.+.|...
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678889999999999999998753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=9.9e-06  Score=54.42  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ++..|+|+||+|+|||||++.|+..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhh
Confidence            4678899999999999999999754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.73  E-value=9.5e-06  Score=52.88  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +..|+|.|++||||||+.+.|..
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998853

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.71  E-value=1.2e-05  Score=53.10  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhh
Q 046239           18 GERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ++.+|+++|++||||||..+.|+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999999988

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.71  E-value=1.1e-05  Score=52.12  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+..|+|.|++||||||+.+.|...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.7e-06  Score=54.39  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..|+|+||+|+||+||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999999853

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.70  E-value=9.1e-06  Score=52.32  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..|+|.|++||||||+.+.|...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998853

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=1.1e-05  Score=53.89  Aligned_cols=23  Identities=17%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..|+++|.|||||||+.+.|+..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999999853

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.1e-05  Score=51.32  Aligned_cols=22  Identities=36%  Similarity=0.687  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..|.|+|++||||||+.+.|..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.67  E-value=1.5e-05  Score=52.49  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=21.4

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .....|+|-|++|||||||.+.|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999998863

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=0.00011  Score=50.79  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+.-+++.||+|+|||+++++|+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHH
Confidence            446689999999999999999985

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=2e-05  Score=51.40  Aligned_cols=25  Identities=32%  Similarity=0.271  Sum_probs=21.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .....|+++|++||||||+.+.++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456889999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=1.3e-05  Score=52.26  Aligned_cols=21  Identities=33%  Similarity=0.665  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.64  E-value=1.7e-05  Score=51.17  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...|+|.|++||||||+.+.|...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457888899999999999998864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=9e-06  Score=53.54  Aligned_cols=27  Identities=26%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...++.+|.+.|++||||||+.+.|..
T Consensus        15 ~~~~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          15 GGFRGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CSCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344678999999999999999999964

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=2.5e-05  Score=51.77  Aligned_cols=83  Identities=18%  Similarity=0.192  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI   97 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   97 (170)
                      ...+++++|++|+|||+++..|...-..  +..+..           + .+..++-+|...+.........+..++...+
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~--~~vp~~-----------L-~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il  107 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN--GEVPEG-----------L-KGRRVLALDMGALVAGAKYRGEFEERLKGVL  107 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHH--TCSCGG-----------G-TTCEEEEECHHHHHTTTCSHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHHh--CCCCHH-----------H-cCceEEEeeHHHHhccCCccHHHHHHHHHHH
Confidence            3457899999999999999888854331  111110           1 3456666777666655555566766666666


Q ss_pred             Hhcc-CCccEEEEEEeCC
Q 046239           98 GLAK-GGIHAVLVVFSAR  114 (170)
Q Consensus        98 ~~~~-~~~~~il~v~~~~  114 (170)
                      .... ..-++++|+-++.
T Consensus       108 ~e~~~~~~~iILfIDeih  125 (195)
T d1jbka_         108 NDLAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHHHSTTTEEEEEETGG
T ss_pred             HHHhcCCCcEEEEcchHH
Confidence            5432 3346778777765

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.61  E-value=1.6e-05  Score=52.46  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +.+|+|+|++||||||+.+.|+..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998743

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.8e-05  Score=52.27  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +.+|+|+||+||||||..+.|+.
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999988864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.6e-05  Score=51.65  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ..|.|.|++|+|||||+..++...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999987543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.59  E-value=1.7e-05  Score=54.93  Aligned_cols=29  Identities=21%  Similarity=0.368  Sum_probs=23.5

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      +...+.-|++.||||+||||+.++|++..
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34445668999999999999999998643

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.57  E-value=2.1e-05  Score=52.08  Aligned_cols=25  Identities=20%  Similarity=0.514  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...+|.|+||+||||||+.+.|+..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.57  E-value=2.5e-05  Score=56.03  Aligned_cols=26  Identities=27%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+..+|+|.|++|+|||||++.|..
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            35678999999999999999999874

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.57  E-value=2.1e-05  Score=51.54  Aligned_cols=22  Identities=32%  Similarity=0.691  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCC
Q 046239           21 TVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +|+|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988743

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.4e-05  Score=52.46  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhh
Q 046239           18 GERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ++..|+|-|++|||||||.+.|.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999998874

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.55  E-value=3.3e-05  Score=51.02  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ....+|+|+|++||||||+.+.|+..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=2.1e-05  Score=51.85  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHhhCC
Q 046239           22 VVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~   42 (170)
                      |+|+||+||||+||++.|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=2.3e-05  Score=50.55  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ++|+++|++||||||+-+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5688889999999999888853

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=2.9e-05  Score=50.69  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +|+++|++||||||+.+.|+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.9e-05  Score=50.59  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +|+++|++||||||..+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988863

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.46  E-value=2.8e-05  Score=55.74  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRKA   44 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~~   44 (170)
                      .+|++.|++|||||||+|+|++...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            4689999999999999999997654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=3.5e-05  Score=50.95  Aligned_cols=20  Identities=40%  Similarity=0.564  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHhhC
Q 046239           22 VVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~   41 (170)
                      |+|+||+||||||+.+.|+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=4e-05  Score=50.06  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+|+++|++||||||+.+.|+.
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.41  E-value=5.3e-05  Score=50.00  Aligned_cols=28  Identities=25%  Similarity=0.247  Sum_probs=23.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...++..|++-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            3445568999999999999999999854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.41  E-value=4.1e-05  Score=49.19  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +|.++|++||||||+-+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999888853

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.30  E-value=6.6e-05  Score=48.89  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..|++.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3567889999999999999864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.28  E-value=0.0002  Score=52.46  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=45.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG   98 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..++++||++|+|||+++..|......  +..+..           + .+..++-+|...+.........+...+..++.
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i~~--~~vp~~-----------l-~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~  108 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRIVK--GDVPEG-----------L-KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQ  108 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHHH--TCSCTT-----------S-TTCEEEEECC-----------CHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHHHh--CCCCHH-----------H-cCceEEEeeHhhhhcccCcchhHHHHHHHHHH
Confidence            345689999999999999877743321  111110           1 34455556666565544444556666666555


Q ss_pred             hccC-CccEEEEEEeCCCCCC----HHHHHHHHHHHHHhccc
Q 046239           99 LAKG-GIHAVLVVFSARNRFS----QEEEAAVHRLPTLFGKK  135 (170)
Q Consensus        99 ~~~~-~~~~il~v~~~~~~~~----~~~~~~~~~l~~~~~~~  135 (170)
                      .... ..++++|+-++..-+.    .......+.|...+..+
T Consensus       109 ~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg  150 (387)
T d1qvra2         109 EVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG  150 (387)
T ss_dssp             HHHTTCSSEEEEECCC-------------------HHHHHTT
T ss_pred             HhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCC
Confidence            4333 3356777666542221    12334556666666544

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.27  E-value=9.8e-05  Score=51.54  Aligned_cols=47  Identities=17%  Similarity=0.091  Sum_probs=36.5

Q ss_pred             hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239           99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus        99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      .....+|++++|+|+..+++..+..+.+.+.    .   +|.++|+||+|+...
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~----~---Kp~IlVlNK~DLv~~   57 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRNPMIEDILK----N---KPRIMLLNKADKADA   57 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSCHHHHHHCS----S---SCEEEEEECGGGSCH
T ss_pred             HHHHhCCEEEEEEECCCCCCCCCHHHHHHHc----C---CCeEEEEECccCCch
Confidence            3456779999999998888877765544442    2   599999999999876

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.26  E-value=8e-05  Score=48.08  Aligned_cols=20  Identities=20%  Similarity=0.576  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhh
Q 046239           21 TVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~   40 (170)
                      .|.++|++||||||+.+.|+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            46788999999999998885

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.22  E-value=8.3e-05  Score=50.61  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...+++.||+|+||||+++++++.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999999863

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00011  Score=49.13  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ++|+|.||+||||||.-..|...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999888743

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=0.00012  Score=48.10  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.9

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+..|+|.|.+||||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.0002  Score=48.93  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=22.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ......+++.||+|+||||++++++..
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            334467899999999999999999864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=1.5e-05  Score=52.52  Aligned_cols=20  Identities=35%  Similarity=0.493  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHhh
Q 046239           21 TVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..+|+|+|||||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45678999999999999874

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.14  E-value=0.00013  Score=51.86  Aligned_cols=24  Identities=21%  Similarity=0.508  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +...++++||||+|||.|.++|+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            456789999999999999999986

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00013  Score=49.44  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +.+++.||+|+||||+.+.|+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46899999999999999999853

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.13  E-value=0.00015  Score=48.51  Aligned_cols=27  Identities=22%  Similarity=0.193  Sum_probs=23.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+++.+|.+.|.|||||||+.+.|..
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            346778999999999999999999863

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.0018  Score=43.81  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...+++.||+|+||||++.+++..
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            345889999999999999998753

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00012  Score=51.61  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHh
Q 046239           21 TVVLLGRTGNGKSATGNSI   39 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l   39 (170)
                      ..+++|+|||||||++.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            5688999999999999887

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00017  Score=51.13  Aligned_cols=26  Identities=19%  Similarity=0.172  Sum_probs=21.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..+.+..|+|.|++|||||||.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            35667899999999999999987764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.11  E-value=0.0095  Score=39.94  Aligned_cols=20  Identities=25%  Similarity=0.210  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhh
Q 046239           21 TVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~   40 (170)
                      .++|-|||.+||||+++++.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            57888999999999998864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.06  E-value=9.8e-05  Score=51.83  Aligned_cols=25  Identities=16%  Similarity=0.263  Sum_probs=18.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+.+.|+|.|++||||||+.++|..
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHH
Confidence            3557999999999999999987653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.05  E-value=0.00021  Score=48.22  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..+++.||+|+||||+++.++..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998863

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.04  E-value=0.00024  Score=48.69  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .....+++.||+|+||||+++.++..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHH
Confidence            44568999999999999999998853

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.02  E-value=0.00022  Score=49.01  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..-|++.||+|+|||++.++|++
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45689999999999999999985

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00024  Score=48.37  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..+++.||+|+||||+++.++..
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHH
Confidence            34788899999999999887643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.95  E-value=0.00028  Score=47.23  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+|++-||+||||||....|+.
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35788889999999999999874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.94  E-value=0.0011  Score=42.09  Aligned_cols=27  Identities=26%  Similarity=0.254  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .++..|++-|+=|||||||++.++..-
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            456789999999999999999988544

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00026  Score=51.73  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHhh
Q 046239           21 TVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..+|+|+|||||||++.+|+
T Consensus        27 l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46789999999999999974

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00026  Score=47.27  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=19.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +.-+++.||+|+||||+++.++.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34589999999999999987664

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.85  E-value=0.00036  Score=51.97  Aligned_cols=24  Identities=21%  Similarity=0.508  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+.+|+++||||+|||-|.++|.+
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccccEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999976

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00038  Score=46.93  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..+++.||+|+||||+++.++..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            34889999999999999999864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.84  E-value=0.00042  Score=47.55  Aligned_cols=23  Identities=30%  Similarity=0.608  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..-+++.||+|+|||++++++++
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34589999999999999999995

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00044  Score=47.68  Aligned_cols=25  Identities=24%  Similarity=0.500  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...-+++.||+|+|||+++++++..
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHH
Confidence            3456899999999999999999863

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00054  Score=47.97  Aligned_cols=26  Identities=27%  Similarity=0.266  Sum_probs=21.0

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..+.+..|+|-|++|||||||.+.|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34456799999999999999987653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00033  Score=48.56  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ...-|++.||+|+|||+|++++++..
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHh
Confidence            44569999999999999999998643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.76  E-value=0.00043  Score=47.44  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +..++|.|++|+|||||++.++.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Confidence            45788999999999999988763

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0005  Score=45.89  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+..|++-|+.||||||+++.|..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999998888754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00051  Score=45.66  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +..|++-|..||||||+++.|..
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999998773

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00036  Score=47.14  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ...|++-|+.||||||+++.|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999998864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.70  E-value=0.00056  Score=50.25  Aligned_cols=26  Identities=31%  Similarity=0.325  Sum_probs=22.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+...|++.||+||||||++.+++..
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhh
Confidence            44567899999999999999998864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00063  Score=45.63  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..+++.||+|+||||+++.++..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            34889999999999999888753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00064  Score=45.23  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..|+|.|..||||||+.+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            5899999999999999998763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.60  E-value=0.00032  Score=48.29  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHhhCC
Q 046239           22 VVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +.+.||+|+|||++++.++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            445699999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.60  E-value=0.00064  Score=45.09  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..|+|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988753

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0052  Score=41.54  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=17.9

Q ss_pred             cEEEEEcCCCCCHHHHHHHhh
Q 046239           20 RTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..++|-|||.+||||+++++.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHH
Confidence            456778999999999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.00075  Score=45.24  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHhhCC
Q 046239           21 TVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+++.||+|+||||++..++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4789999999999999999863

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00059  Score=46.00  Aligned_cols=25  Identities=28%  Similarity=0.309  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +-++++|-|.-|||||||++.++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            3467889999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.51  E-value=0.0008  Score=44.39  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHhhC
Q 046239           21 TVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        21 ~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00095  Score=43.87  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=21.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .++..+.|.|++|+|||+|...++.
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            4567899999999999999876653

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0014  Score=46.50  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+...++++||+|+|||.|.++|+.
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHh
Confidence            34455799999999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.41  E-value=0.0009  Score=48.42  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ....+++.||+|+|||+|.++|++.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHH
Confidence            4458899999999999999998764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.40  E-value=0.0011  Score=47.98  Aligned_cols=26  Identities=23%  Similarity=0.578  Sum_probs=22.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+...++++||||+|||-+.++|+.
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHh
Confidence            34567799999999999999999874

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0011  Score=44.73  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +..|++-|.-||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            35788999999999999999874

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.0013  Score=43.87  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+.-|++-|.-||||||+++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            567899999999999999998863

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.12  E-value=0.0018  Score=41.95  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      +.-+++.|++|+||||+.-.|..
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999877664

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0019  Score=43.35  Aligned_cols=25  Identities=20%  Similarity=0.169  Sum_probs=20.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .++..+.|.|++|+|||||...++-
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3567899999999999999976653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.00  E-value=0.002  Score=41.67  Aligned_cols=24  Identities=33%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+.-+++.|++|+||||+.-.|..
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            345689999999999999988774

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.88  E-value=0.0025  Score=42.95  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..|+|.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999853

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.73  E-value=0.0015  Score=46.41  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhC
Q 046239           20 RTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..++++|++|+|||++.+++.+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999998864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.73  E-value=0.0032  Score=42.44  Aligned_cols=24  Identities=17%  Similarity=0.356  Sum_probs=19.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..+..++|.|++|+|||||.-.++
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHH
Confidence            356788999999999999985544

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.67  E-value=0.0031  Score=40.47  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=19.6

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+.-+++.|++|+||||+.-.|..
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            345689999999999999866654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.65  E-value=0.0043  Score=42.67  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=20.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      -.++..+++.|+||+|||||+..++
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            4566788999999999999975554

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.62  E-value=0.0039  Score=41.86  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      .++..++|.|++|+|||+|...++
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia   47 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFV   47 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHH
Confidence            356788999999999999986665

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.62  E-value=0.0045  Score=43.78  Aligned_cols=27  Identities=22%  Similarity=0.370  Sum_probs=21.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..+...++++||+|+|||.+.+.|...
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHH
Confidence            344447889999999999999887753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.57  E-value=0.004  Score=41.63  Aligned_cols=25  Identities=16%  Similarity=0.149  Sum_probs=20.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      -.++..++|.|++|+|||+|.-.++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            3456789999999999999986654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.53  E-value=0.0038  Score=41.57  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHhhCCc
Q 046239           22 VVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      +.+.|++|+|||-|+++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7799999999999999998643

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.51  E-value=0.0039  Score=41.08  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..-.+++.||+++|||+|+++|+..
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            3467889999999999999998764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0036  Score=45.85  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=18.2

Q ss_pred             cEEEEEcCCCCCHHHHHHHhh
Q 046239           20 RTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..++|+|++|+|||++++.++
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHH
Confidence            458999999999999987665

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.44  E-value=0.0034  Score=44.50  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..+++.||||+|||.+.++|.+.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            34555799999999999999864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0059  Score=41.00  Aligned_cols=25  Identities=12%  Similarity=0.137  Sum_probs=21.1

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..++..+.|.|++|+|||+|.-.++
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH
Confidence            4566789999999999999987665

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.41  E-value=0.0073  Score=41.63  Aligned_cols=27  Identities=22%  Similarity=0.276  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      ...-.+.+.|++++|||+|+++|+...
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            445677888999999999999987543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.36  E-value=0.0054  Score=40.70  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      -.++..+.|.|++|+|||+|.-.++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            3467889999999999999975443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.007  Score=42.16  Aligned_cols=28  Identities=14%  Similarity=0.125  Sum_probs=24.3

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      +...+.+++|+|++|+|||+|+..++..
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            4667889999999999999999888753

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.16  E-value=0.0045  Score=44.05  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239           19 ERTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      ..+|.|=|.-|+||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999854

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0067  Score=41.49  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=18.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhh
Q 046239           18 GERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ++...+|.|++|+|||||.-.|+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHH
Confidence            35678899999999999986554

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.13  E-value=0.0058  Score=43.42  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCC
Q 046239           20 RTVVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~   42 (170)
                      .+|.|-|.-|+||||+++.|...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC-
T ss_pred             eEEEEECCcCCCHHHHHHHHHHH
Confidence            57899999999999999999753

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.10  E-value=0.0088  Score=41.32  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ....|+|.|..|.|||||...+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999988864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.10  E-value=0.0072  Score=43.03  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCCHHHHHHHhhCCc
Q 046239           20 RTVVLLGRTGNGKSATGNSILGRK   43 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~l~~~~   43 (170)
                      .+|.|=|.-|+||||+++.|....
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l   30 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAA   30 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGG
T ss_pred             EEEEEECCccCCHHHHHHHHHHHh
Confidence            578999999999999999998643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.0074  Score=36.30  Aligned_cols=25  Identities=12%  Similarity=0.053  Sum_probs=22.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      .++++.|.+-|-+|+||||+.++|.
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHH
Confidence            4678999999999999999999985

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.91  E-value=0.0066  Score=42.04  Aligned_cols=17  Identities=24%  Similarity=0.403  Sum_probs=14.3

Q ss_pred             cEEEEEcCCCCCHHHHH
Q 046239           20 RTVVLLGRTGNGKSATG   36 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTli   36 (170)
                      ..++|+|++|+||||++
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            34789999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.68  E-value=0.048  Score=36.50  Aligned_cols=48  Identities=25%  Similarity=0.224  Sum_probs=28.9

Q ss_pred             cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARN-RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..++|.+++|+++.+ .+...-.+  +.|.-....+  .+.+||+||+|+..+
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~id--R~Lv~a~~~~--i~pvIvlnK~DL~~~   56 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLD--RFLVLVEAND--IQPIICITKMDLIED   56 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHH--HHHHHHHTTT--CEEEEEEECGGGCCC
T ss_pred             ccccCEEEEEEECCCCCCCHHHHH--HHHHHHHHcC--CCEEEEEeccccccc
Confidence            357888899988752 34433222  2222222222  378889999999876

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.65  E-value=0.013  Score=35.68  Aligned_cols=23  Identities=26%  Similarity=0.242  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhh
Q 046239           18 GERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ...+.+|.+|+|+|||+++-.++
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            34566788999999999885443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.61  E-value=0.0087  Score=41.80  Aligned_cols=16  Identities=19%  Similarity=0.484  Sum_probs=14.0

Q ss_pred             EEEEEcCCCCCHHHHH
Q 046239           21 TVVLLGRTGNGKSATG   36 (170)
Q Consensus        21 ~i~lvG~~gsGKSTli   36 (170)
                      .++|.|++||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4788999999999875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.017  Score=41.51  Aligned_cols=20  Identities=35%  Similarity=0.523  Sum_probs=16.8

Q ss_pred             CcEEEEEcCCCCCHHHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATGNS   38 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~   38 (170)
                      +...+|.|++|+||||++..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHH
Confidence            56788889999999998744

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.86  E-value=0.046  Score=36.47  Aligned_cols=48  Identities=13%  Similarity=0.072  Sum_probs=28.5

Q ss_pred             cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239          101 KGGIHAVLVVFSARN-RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED  152 (170)
Q Consensus       101 ~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~  152 (170)
                      ..++|.+++|+.+.+ .++..-.+  ++|.......  .+.+||+||+|+.+.
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ld--R~Lv~a~~~~--i~pvIvlnK~DL~~~   56 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIID--KFLVLAEKNE--LETVMVINKMDLYDE   56 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHH--HHHHHHHHTT--CEEEEEECCGGGCCH
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHH--HHHHHHHHcC--CCEEEEEeCcccCCH
Confidence            457788899988753 34433211  1121111112  388889999999876

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.85  E-value=0.038  Score=38.05  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=21.3

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ...+.+++++|++|+|||+|+..++
T Consensus        65 igkGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          65 YAKGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCCCCHHHHHHHHH
Confidence            4567789999999999999987665

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.042  Score=37.55  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=20.2

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+..+.+.|++|+|||||.=.++.
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHH
Confidence            3567889999999999999855553

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.49  E-value=0.046  Score=36.93  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      .+.-|+|.|++|+||+++.+.|-.
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHH
Confidence            344579999999999999998853

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.93  E-value=0.03  Score=33.61  Aligned_cols=20  Identities=30%  Similarity=0.124  Sum_probs=15.8

Q ss_pred             CCCcEEEEEcCCCCCHHHHH
Q 046239           17 IGERTVVLLGRTGNGKSATG   36 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTli   36 (170)
                      .++.+++|.+++|+|||...
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            45678888899999999443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.06  Score=37.64  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=15.7

Q ss_pred             CCcEEEEEcCCCCCHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATG   36 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTli   36 (170)
                      .+..-+++|-+|+|||||-
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            3456789999999999975

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.18  E-value=0.067  Score=36.22  Aligned_cols=19  Identities=42%  Similarity=0.677  Sum_probs=16.3

Q ss_pred             cEEEEEcCCCCCHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNS   38 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~   38 (170)
                      ++|++.|+-|+||||+.-.
T Consensus         2 r~Iai~gKGGvGKTT~a~n   20 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQN   20 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHH
Confidence            4789999999999999744

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.18  E-value=0.062  Score=37.67  Aligned_cols=18  Identities=28%  Similarity=0.564  Sum_probs=15.3

Q ss_pred             CcEEEEEcCCCCCHHHHH
Q 046239           19 ERTVVLLGRTGNGKSATG   36 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTli   36 (170)
                      +.+-+++|-+|+|||||-
T Consensus        14 ~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CCEEEEEECTTSCHHHHT
T ss_pred             CCEEEEEccCCCCccccc
Confidence            456789999999999974

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.07  E-value=0.093  Score=35.79  Aligned_cols=23  Identities=17%  Similarity=0.226  Sum_probs=17.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHh
Q 046239           17 IGERTVVLLGRTGNGKSATGNSI   39 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l   39 (170)
                      .....|.+.|+-|+||||+.-.|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHH
Confidence            34567778899999999976544

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.59  E-value=0.082  Score=37.09  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=15.8

Q ss_pred             CCcEEEEEcCCCCCHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATG   36 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTli   36 (170)
                      .+.+-+++|-+|+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            3456789999999999986

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.43  E-value=0.074  Score=36.74  Aligned_cols=25  Identities=12%  Similarity=0.222  Sum_probs=20.7

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ...+.+++++|++|+|||+|+..+.
T Consensus        65 ig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          65 IGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             CBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             ccCCCEEEeecCCCCChHHHHHHHH
Confidence            5567889999999999999975544

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.08  E-value=0.098  Score=33.55  Aligned_cols=16  Identities=25%  Similarity=0.370  Sum_probs=13.0

Q ss_pred             EEEEEcCCCCCHHHHH
Q 046239           21 TVVLLGRTGNGKSATG   36 (170)
Q Consensus        21 ~i~lvG~~gsGKSTli   36 (170)
                      +.++.+|+|+|||...
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            4678899999999743

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.84  E-value=0.12  Score=35.38  Aligned_cols=25  Identities=20%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+..+.+.|++++|||+|.-.++.
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHH
Confidence            3556889999999999999866664

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.72  E-value=0.14  Score=35.01  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=20.4

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ...+..+.+.|++|+|||||.-.++
T Consensus        57 ~~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          57 LPRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             BCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             cccceeEEEecCCCcHHHHHHHHHH
Confidence            4557788999999999999975555

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.56  E-value=0.12  Score=33.62  Aligned_cols=24  Identities=4%  Similarity=-0.022  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           18 GERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ....+++-|++|+||+++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988875

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.13  E-value=0.17  Score=34.27  Aligned_cols=21  Identities=29%  Similarity=0.616  Sum_probs=15.7

Q ss_pred             CcEEEEEcCCCCCHHHHHHHh
Q 046239           19 ERTVVLLGRTGNGKSATGNSI   39 (170)
Q Consensus        19 ~~~i~lvG~~gsGKSTlin~l   39 (170)
                      ...|.+-|+-|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            345666699999999986444

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.10  E-value=0.086  Score=36.24  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHh
Q 046239           15 PSIGERTVVLLGRTGNGKSATGNSI   39 (170)
Q Consensus        15 ~~~~~~~i~lvG~~gsGKSTlin~l   39 (170)
                      +..++.+++++|++|+|||+|+..+
T Consensus        63 pig~GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          63 PVGRGQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             CCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred             cccCCceEeeccCCCCChHHHHHHH
Confidence            3457788999999999999998543

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.90  E-value=0.059  Score=35.87  Aligned_cols=19  Identities=26%  Similarity=0.406  Sum_probs=15.3

Q ss_pred             CCcEEEEEcCCCCCHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATG   36 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTli   36 (170)
                      .+..+++++|+|+|||...
T Consensus        57 ~g~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHH
T ss_pred             CCCCEEEEecCCChHHHHH
Confidence            3456889999999999754

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.69  E-value=0.14  Score=33.00  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=17.0

Q ss_pred             cEEEEEcCC-CCCHHHHHHHhh
Q 046239           20 RTVVLLGRT-GNGKSATGNSIL   40 (170)
Q Consensus        20 ~~i~lvG~~-gsGKSTlin~l~   40 (170)
                      +++.|.|.. |+||||+.-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            578899995 999999975554

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.33  E-value=0.053  Score=35.17  Aligned_cols=19  Identities=21%  Similarity=0.296  Sum_probs=15.3

Q ss_pred             CCcEEEEEcCCCCCHHHHH
Q 046239           18 GERTVVLLGRTGNGKSATG   36 (170)
Q Consensus        18 ~~~~i~lvG~~gsGKSTli   36 (170)
                      .+..+++.+|+|+|||+..
T Consensus        39 ~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHH
Confidence            3457889999999999753

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.55  E-value=0.08  Score=36.26  Aligned_cols=18  Identities=22%  Similarity=0.307  Sum_probs=15.0

Q ss_pred             CCCcEEEEEcCCCCCHHH
Q 046239           17 IGERTVVLLGRTGNGKSA   34 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKST   34 (170)
                      .++..+++.+++|+|||+
T Consensus         7 ~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             STTCEEEECCCTTSSTTT
T ss_pred             hcCCcEEEEECCCCCHHH
Confidence            355678889999999995

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.96  E-value=0.22  Score=31.85  Aligned_cols=21  Identities=24%  Similarity=0.588  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHhhCC
Q 046239           22 VVLLGRTGNGKSATGNSILGR   42 (170)
Q Consensus        22 i~lvG~~gsGKSTlin~l~~~   42 (170)
                      |+|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999888753

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.02  E-value=0.25  Score=33.69  Aligned_cols=19  Identities=37%  Similarity=0.618  Sum_probs=15.7

Q ss_pred             cEEEEEcCCCCCHHHHHHH
Q 046239           20 RTVVLLGRTGNGKSATGNS   38 (170)
Q Consensus        20 ~~i~lvG~~gsGKSTlin~   38 (170)
                      .+|++-|+-|+||||+.-.
T Consensus         3 r~IaisgKGGVGKTT~a~N   21 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQN   21 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHH
Confidence            4678889999999998633

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.84  E-value=0.35  Score=31.46  Aligned_cols=20  Identities=30%  Similarity=0.664  Sum_probs=15.8

Q ss_pred             cEEEEE-cCCCCCHHHHHHHh
Q 046239           20 RTVVLL-GRTGNGKSATGNSI   39 (170)
Q Consensus        20 ~~i~lv-G~~gsGKSTlin~l   39 (170)
                      ++|++. |+.|+||||+.-.|
T Consensus         2 kvIav~s~KGGvGKTtia~nl   22 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANL   22 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHH
Confidence            467777 88999999997554

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.26  E-value=0.39  Score=31.23  Aligned_cols=21  Identities=24%  Similarity=0.627  Sum_probs=16.5

Q ss_pred             CcEEEEE-cCCCCCHHHHHHHh
Q 046239           19 ERTVVLL-GRTGNGKSATGNSI   39 (170)
Q Consensus        19 ~~~i~lv-G~~gsGKSTlin~l   39 (170)
                      +.+|++. +..|+||||+.-.|
T Consensus         2 ~~vIav~~~kGGvGKTtia~nL   23 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANL   23 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHH
Confidence            3578888 67999999997554

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=83.84  E-value=0.19  Score=31.13  Aligned_cols=22  Identities=45%  Similarity=0.573  Sum_probs=16.2

Q ss_pred             CCcEEEEEcCCCC-CHHHHHHHhh
Q 046239           18 GERTVVLLGRTGN-GKSATGNSIL   40 (170)
Q Consensus        18 ~~~~i~lvG~~gs-GKSTlin~l~   40 (170)
                      ++.+|+++|.||| |++| ++.+.
T Consensus         1 ~pK~I~IlGsTGSIG~~t-L~Vi~   23 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHST-LDLIE   23 (150)
T ss_dssp             CCEEEEEETTTSHHHHHH-HHHHH
T ss_pred             CCcEEEEECCCcHHHHHH-HHHHH
Confidence            3579999999997 6766 44444

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=82.58  E-value=0.49  Score=36.61  Aligned_cols=24  Identities=25%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhh
Q 046239           17 IGERTVVLLGRTGNGKSATGNSIL   40 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~   40 (170)
                      ..+..|++.|.+|||||.-.+.++
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il  107 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIM  107 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Confidence            455679999999999999877654

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.50  E-value=0.56  Score=36.46  Aligned_cols=25  Identities=16%  Similarity=0.493  Sum_probs=20.6

Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           17 IGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        17 ~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ..+..|++.|.+|||||.-.+.++.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~  147 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQ  147 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHH
Confidence            4567899999999999998777654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=80.92  E-value=0.71  Score=27.94  Aligned_cols=20  Identities=20%  Similarity=0.129  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCCHHH-HHHHhh
Q 046239           21 TVVLLGRTGNGKSA-TGNSIL   40 (170)
Q Consensus        21 ~i~lvG~~gsGKST-lin~l~   40 (170)
                      .-+++||=.||||| |++.+-
T Consensus         4 L~~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           4 IEFITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEEccccCHHHHHHHHHHH
Confidence            45788999999999 555543

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=80.41  E-value=0.64  Score=36.10  Aligned_cols=26  Identities=15%  Similarity=0.468  Sum_probs=20.5

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239           16 SIGERTVVLLGRTGNGKSATGNSILG   41 (170)
Q Consensus        16 ~~~~~~i~lvG~~gsGKSTlin~l~~   41 (170)
                      ...+..|++-|.+|||||.-.+.++.
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~k~il~  113 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENTKKVIQ  113 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            34566799999999999998766643