Citrus Sinensis ID: 046290

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
MEKETVPGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKEQHE
ccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHccccccccccccccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHccccEEEEccccccccccEEcccHHHHHHccccccEEEEcccccccc
cccccccccccccEEEEcccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHccccEEEEccccccHHHHHHHccccHHHHccccccEEEEEccccccc
meketvpggsgsamlqskeeeepkmtdgkkKMKVMVAIDESAESFNALKWALDNLygivgftpeagggggiLTIVHVqepfqrfvlpalstssafyaTSSMVESVRKSQEENSAALLSRALQMCKDKMVKAEslvlegdpkdmiCQSAEQMHIDLLVVGSRGLGKIKRAFLGsvsdycahhavcpiiivkppkeqhe
meketvpggsgsamlqskeeeepkmtdgkkKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKEQHE
MEKETVPGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKEQHE
**********************************MVAIDESAESFNALKWALDNLYGIVGF**********LTIVHVQEPFQRFVLPALSTSSAFYA************************QMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV********
*********************************VMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPI****P******
******************************KMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYAT***************AALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKEQHE
*****************************KKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPP*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEKETVPGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKEQHE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query197 2.2.26 [Sep-21-2011]
Q8LGG8175 Universal stress protein no no 0.771 0.868 0.290 2e-16
P42297148 Universal stress protein yes no 0.736 0.979 0.297 8e-10
Q57951170 Universal stress protein yes no 0.436 0.505 0.356 8e-08
P74148154 Universal stress protein N/A no 0.517 0.662 0.317 2e-07
P74897137 Universal stress protein N/A no 0.548 0.788 0.295 4e-07
P72745108 Universal stress protein N/A no 0.329 0.601 0.402 5e-07
O07552166 Stress response protein N no no 0.751 0.891 0.245 7e-07
A0QZA1 294 Universal stress protein yes no 0.715 0.479 0.257 2e-06
Q2FXL6166 Putative universal stress yes no 0.690 0.819 0.268 3e-05
Q6GFZ7166 Putative universal stress yes no 0.690 0.819 0.268 3e-05
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2 Back     alignment and function desciption
 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 20/172 (11%)

Query: 28  GKKKMKVMVAIDESA---------ESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQ 78
           G +  KVMVA++ S              A +W L+ +         +      + ++HVQ
Sbjct: 2   GSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIV-------RSNTSDFKILLLHVQ 54

Query: 79  EPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEG 138
              +           + YA+      +R+S +     LL   +  C +  V  E+ +  G
Sbjct: 55  VVDED----GFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTG 110

Query: 139 DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
           DPKD+ICQ  +++  D LVVGSRGLG+ ++ F+G+VS +C  HA CP++ +K
Sbjct: 111 DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162

Arabidopsis thaliana (taxid: 3702)
>sp|P42297|YXIE_BACSU Universal stress protein YxiE OS=Bacillus subtilis (strain 168) GN=yxiE PE=3 SV=1 Back     alignment and function description
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0531 PE=3 SV=1 Back     alignment and function description
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1388 PE=3 SV=1 Back     alignment and function description
>sp|P74897|YQA3_THEAQ Universal stress protein in QAH/OAS sulfhydrylase 3'region OS=Thermus aquaticus PE=3 SV=1 Back     alignment and function description
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1101 PE=3 SV=1 Back     alignment and function description
>sp|O07552|NHAX_BACSU Stress response protein NhaX OS=Bacillus subtilis (strain 168) GN=nhaX PE=2 SV=2 Back     alignment and function description
>sp|A0QZA1|Y3950_MYCS2 Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3950 PE=1 SV=1 Back     alignment and function description
>sp|Q2FXL6|Y1819_STAA8 Putative universal stress protein SAOUHSC_01819 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_01819 PE=3 SV=1 Back     alignment and function description
>sp|Q6GFZ7|Y1788_STAAR Putative universal stress protein SAR1788 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1788 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
224139952180 predicted protein [Populus trichocarpa] 0.817 0.894 0.692 7e-61
359481111203 PREDICTED: universal stress protein A-li 0.812 0.788 0.652 2e-58
224088144172 predicted protein [Populus trichocarpa] 0.812 0.930 0.691 2e-57
297829748200 universal stress protein family protein 0.883 0.87 0.605 8e-56
18399413199 adenine nucleotide alpha hydrolases-like 0.883 0.874 0.597 9e-56
79313191201 adenine nucleotide alpha hydrolases-like 0.883 0.865 0.596 2e-55
30681955200 adenine nucleotide alpha hydrolases-like 0.883 0.87 0.6 3e-55
297817160194 universal stress protein family protein 0.832 0.845 0.603 3e-55
30694811204 universal stress protein (USP) family pr 0.817 0.789 0.596 2e-54
21594903199 ethylene-responsive protein, putative [A 0.883 0.874 0.592 3e-54
>gi|224139952|ref|XP_002323356.1| predicted protein [Populus trichocarpa] gi|222867986|gb|EEF05117.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 115/166 (69%), Positives = 138/166 (83%), Gaps = 5/166 (3%)

Query: 32  MKVMVAIDESAESFNALKWALDNLYGIVGFTPE---AGGGGGILTIVHVQEPFQRFVLPA 88
           M++MVAIDES  SF ALKWALD+L  + G TP    +     ++T+VHVQ+PFQ +V+PA
Sbjct: 1   MRIMVAIDESDGSFYALKWALDHL--VDGITPTNVPSQEESSLITLVHVQQPFQHYVIPA 58

Query: 89  LSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSA 148
               +AFYAT S+VESVR++Q EN AALLSRALQMCKDKM+KAESL+LEG+PKD ICQ+ 
Sbjct: 59  GPGGAAFYATPSIVESVREAQAENDAALLSRALQMCKDKMIKAESLILEGEPKDKICQAT 118

Query: 149 EQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKE 194
           EQM +DLLV+GSRGLGKIKRAFLGSVSDYCAHHA CP++IVKPPKE
Sbjct: 119 EQMQVDLLVLGSRGLGKIKRAFLGSVSDYCAHHAKCPVLIVKPPKE 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359481111|ref|XP_002266746.2| PREDICTED: universal stress protein A-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|224088144|ref|XP_002308342.1| predicted protein [Populus trichocarpa] gi|222854318|gb|EEE91865.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297829748|ref|XP_002882756.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297328596|gb|EFH59015.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18399413|ref|NP_566406.1| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] gi|332641598|gb|AEE75119.1| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79313191|ref|NP_001030675.1| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] gi|332641601|gb|AEE75122.1| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30681955|ref|NP_850562.1| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] gi|6671949|gb|AAF23209.1|AC016795_22 unknown protein [Arabidopsis thaliana] gi|13926250|gb|AAK49598.1|AF372882_1 MEC18.3/MEC18.3 [Arabidopsis thaliana] gi|16226626|gb|AAL16217.1|AF428448_1 At3g11930/MEC18.3 [Arabidopsis thaliana] gi|10998131|dbj|BAB03102.1| unnamed protein product [Arabidopsis thaliana] gi|15215662|gb|AAK91376.1| MEC18.3/MEC18.3 [Arabidopsis thaliana] gi|16323234|gb|AAL15351.1| AT3g11930/MEC18.3 [Arabidopsis thaliana] gi|332641600|gb|AEE75121.1| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297817160|ref|XP_002876463.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297322301|gb|EFH52722.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30694811|ref|NP_191404.2| universal stress protein (USP) family protein [Arabidopsis thaliana] gi|28393267|gb|AAO42062.1| unknown protein [Arabidopsis thaliana] gi|28827498|gb|AAO50593.1| unknown protein [Arabidopsis thaliana] gi|332646261|gb|AEE79782.1| universal stress protein (USP) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21594903|gb|AAM66054.1| ethylene-responsive protein, putative [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
TAIR|locus:2076381204 AT3G58450 "AT3G58450" [Arabido 0.969 0.936 0.544 2.4e-53
TAIR|locus:2081531226 AT3G11930 "AT3G11930" [Arabido 0.741 0.646 0.552 2.3e-50
TAIR|locus:2024291171 AT1G09740 "AT1G09740" [Arabido 0.776 0.894 0.383 7.6e-25
TAIR|locus:2096089162 AT3G62550 "AT3G62550" [Arabido 0.751 0.913 0.363 5.5e-22
TAIR|locus:2043273162 AT2G47710 "AT2G47710" [Arabido 0.802 0.975 0.358 1.1e-21
TAIR|locus:2199282160 AT1G68300 "AT1G68300" [Arabido 0.766 0.943 0.349 1.4e-18
TAIR|locus:2222687175 AT5G14680 "AT5G14680" [Arabido 0.771 0.868 0.296 3.7e-16
TAIR|locus:2084153175 AT3G01520 "AT3G01520" [Arabido 0.492 0.554 0.381 4.7e-16
TAIR|locus:2131719260 PHOS34 "AT4G27320" [Arabidopsi 0.812 0.615 0.317 6.9e-15
TAIR|locus:2049334193 RD2 "AT2G21620" [Arabidopsis t 0.421 0.430 0.395 6.2e-14
TAIR|locus:2076381 AT3G58450 "AT3G58450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 104/191 (54%), Positives = 140/191 (73%)

Query:     4 ETVPGGSGSAMLQSKEEEEPKMTDGKKKMKVMVAIDESAESFNALKWALDNLYGIVGFTP 63
             ET     G     +    E      KKK+KVMVAIDES  SF+AL+WA+D+L  ++   P
Sbjct:     2 ETYVDAIGEDTAATTTTAETAANKNKKKLKVMVAIDESKNSFDALEWAVDHLRVVISAEP 61

Query:    64 EAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQM 123
             E G  GG+LT++HV   + +++ P+  T+SA YAT S+ E +RK++EE++  L +RAL++
Sbjct:    62 ETGQEGGLLTLLHVHPTYLQYIYPSGGTASAVYATDSVPEPMRKAREESTTNLFTRALEI 121

Query:   124 CKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAV 183
             C+ KMVK E+++LEGDPK+MICQ+ EQ H+DLLVVGSRGLG IKRAFLGSVSDYCA HA 
Sbjct:   122 CRGKMVKTETMILEGDPKEMICQAVEQTHVDLLVVGSRGLGMIKRAFLGSVSDYCAQHAK 181

Query:   184 CPIIIVKPPKE 194
             CPI+IV+PP+E
Sbjct:   182 CPILIVRPPRE 192
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2081531 AT3G11930 "AT3G11930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024291 AT1G09740 "AT1G09740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096089 AT3G62550 "AT3G62550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043273 AT2G47710 "AT2G47710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199282 AT1G68300 "AT1G68300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222687 AT5G14680 "AT5G14680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084153 AT3G01520 "AT3G01520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131719 PHOS34 "AT4G27320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049334 RD2 "AT2G21620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 3e-34
pfam00582139 pfam00582, Usp, Universal stress protein family 3e-29
COG0589154 COG0589, UspA, Universal stress protein UspA and r 1e-19
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 1e-12
PRK15005144 PRK15005, PRK15005, universal stress protein F; Pr 0.001
COG3551402 COG3551, COG3551, Uncharacterized protein conserve 0.002
cd01988132 cd01988, Na_H_Antiporter_C, The C-terminal domain 0.002
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information 
 Score =  117 bits (296), Expect = 3e-34
 Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 27/157 (17%)

Query: 33  KVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTS 92
           +++VA+D S ES  AL+WA             A   G  L ++HV +P            
Sbjct: 1   RILVAVDGSEESERALRWAARL----------ARRLGAELVLLHVVDPP----------- 39

Query: 93  SAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMH 152
                  S    + +  EE + ALL    +   +  VK E++VLEGDP + I ++AE++ 
Sbjct: 40  ------PSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELG 93

Query: 153 IDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIV 189
            DL+V+GSRG   ++R  LGSV++    HA CP+++V
Sbjct: 94  ADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Length = 130
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>gnl|CDD|184967 PRK15005, PRK15005, universal stress protein F; Provisional Back     alignment and domain information
>gnl|CDD|226081 COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|238946 cd01988, Na_H_Antiporter_C, The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 197
PRK15456142 universal stress protein UspG; Provisional 99.94
PRK15005144 universal stress protein F; Provisional 99.94
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.93
PRK09982142 universal stress protein UspD; Provisional 99.92
PRK15118144 universal stress global response regulator UspA; P 99.91
PRK11175305 universal stress protein UspE; Provisional 99.91
PRK10116142 universal stress protein UspC; Provisional 99.9
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.9
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.89
PRK11175 305 universal stress protein UspE; Provisional 99.89
cd01987124 USP_OKCHK USP domain is located between the N-term 99.88
cd00293130 USP_Like Usp: Universal stress protein family. The 99.83
COG0589154 UspA Universal stress protein UspA and related nuc 99.79
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.6
PRK10490 895 sensor protein KdpD; Provisional 99.39
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.32
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.43
PLN03159832 cation/H(+) antiporter 15; Provisional 97.64
PLN03159 832 cation/H(+) antiporter 15; Provisional 97.38
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 97.15
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 96.56
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 96.42
PRK12342 254 hypothetical protein; Provisional 96.04
PRK03359 256 putative electron transfer flavoprotein FixA; Revi 95.82
COG2086 260 FixA Electron transfer flavoprotein, beta subunit 95.13
COG0037 298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 94.94
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 94.79
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 94.29
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 93.21
PRK07313182 phosphopantothenoylcysteine decarboxylase; Validat 93.15
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 93.05
PRK14665 360 mnmA tRNA-specific 2-thiouridylase MnmA; Provision 92.79
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 92.74
TIGR00268252 conserved hypothetical protein TIGR00268. The N-te 92.61
TIGR01162156 purE phosphoribosylaminoimidazole carboxylase, Pur 92.35
PF02441129 Flavoprotein: Flavoprotein; InterPro: IPR003382 Th 92.3
PRK13820 394 argininosuccinate synthase; Provisional 92.28
COG0041162 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m 91.95
PRK10660 436 tilS tRNA(Ile)-lysidine synthetase; Provisional 91.39
PF00731150 AIRC: AIR carboxylase; InterPro: IPR000031 Phospho 91.04
TIGR02113177 coaC_strep phosphopantothenoylcysteine decarboxyla 90.78
cd01990202 Alpha_ANH_like_I This is a subfamily of Adenine nu 90.54
cd01995169 ExsB ExsB is a transcription regulator related pro 90.33
PRK05579 399 bifunctional phosphopantothenoylcysteine decarboxy 90.33
PRK06029185 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Prov 90.15
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844100 GARS_N: Phosphoribosylglycinamide synthetase, N do 90.0
TIGR03556 471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 89.2
PRK13982 475 bifunctional SbtC-like/phosphopantothenoylcysteine 89.0
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 88.94
TIGR02765 429 crypto_DASH cryptochrome, DASH family. Photolyases 88.93
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 88.79
PRK05253 301 sulfate adenylyltransferase subunit 2; Provisional 88.51
PRK14664 362 tRNA-specific 2-thiouridylase MnmA; Provisional 87.0
cd01713173 PAPS_reductase This domain is found in phosphoaden 86.64
cd01985181 ETF The electron transfer flavoprotein (ETF) serve 86.57
PF07355 349 GRDB: Glycine/sarcosine/betaine reductase selenopr 86.39
PRK10867 433 signal recognition particle protein; Provisional 86.27
PRK08305196 spoVFB dipicolinate synthase subunit B; Reviewed 86.08
TIGR00521 390 coaBC_dfp phosphopantothenoylcysteine decarboxylas 85.9
COG1606 269 ATP-utilizing enzymes of the PP-loop superfamily [ 85.63
TIGR00032 394 argG argininosuccinate synthase. argG in bacteria, 85.04
TIGR02852187 spore_dpaB dipicolinic acid synthetase, B subunit. 84.51
PF02601 319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 84.23
cd01986103 Alpha_ANH_like Adenine nucleotide alpha hydrolases 84.08
KOG1467556 consensus Translation initiation factor 2B, delta 83.67
PRK00143 346 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed 83.63
PLN00200 404 argininosuccinate synthase; Provisional 83.54
COG0541 451 Ffh Signal recognition particle GTPase [Intracellu 83.17
cd01714202 ETF_beta The electron transfer flavoprotein (ETF) 83.07
TIGR00342371 thiazole biosynthesis/tRNA modification protein Th 82.5
COG0452 392 Dfp Phosphopantothenoylcysteine synthetase/decarbo 81.94
PRK00109138 Holliday junction resolvase-like protein; Reviewed 81.91
cd0556599 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en 81.75
TIGR02699174 archaeo_AfpA archaeoflavoprotein AfpA. The prototy 81.41
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 81.02
TIGR0085395 pts-lac PTS system, lactose/cellobiose family IIB 80.77
PRK06027286 purU formyltetrahydrofolate deformylase; Reviewed 80.23
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information 
Probab=99.94  E-value=8.7e-26  Score=163.87  Aligned_cols=140  Identities=21%  Similarity=0.268  Sum_probs=112.5

Q ss_pred             CccEEEEEeCCC--HHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHH
Q 046290           30 KKMKVMVAIDES--AESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRK  107 (197)
Q Consensus        30 ~~~~Ilv~vd~s--~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (197)
                      |+++||||+|+|  +.+..++++|..+          |+.. ++++++||+++.........      .   .....+.+
T Consensus         1 m~~~ILv~vD~S~~~~s~~al~~A~~l----------a~~~-~~l~llhv~~~~~~~~~~~~------~---~~~~~~~~   60 (142)
T PRK15456          1 MYKTIIMPVDVFEMELSDKAVRHAEFL----------AQDD-GVIHLLHVLPGSASLSLHRF------A---ADVRRFEE   60 (142)
T ss_pred             CCccEEEeccCCchhHHHHHHHHHHHH----------HhcC-CeEEEEEEecCccccccccc------c---cchhhHHH
Confidence            478999999998  4899999999999          8774 69999999987532111000      0   11123445


Q ss_pred             HHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcEE
Q 046290          108 SQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPII  187 (197)
Q Consensus       108 ~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pVl  187 (197)
                      ...+..++.++.+.+.+...++++++++..|++.+.|.+++++.++||||||+++++ +.++++||++++++++++||||
T Consensus        61 ~~~~~~~~~l~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVL  139 (142)
T PRK15456         61 HLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVL  139 (142)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEE
Confidence            566667777777776665557788999999999999999999999999999999976 7788999999999999999999


Q ss_pred             EEC
Q 046290          188 IVK  190 (197)
Q Consensus       188 iv~  190 (197)
                      |||
T Consensus       140 vV~  142 (142)
T PRK15456        140 VVR  142 (142)
T ss_pred             EeC
Confidence            996

>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>TIGR00268 conserved hypothetical protein TIGR00268 Back     alignment and domain information
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN [] Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE Back     alignment and domain information
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal Back     alignment and domain information
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>cd01995 ExsB ExsB is a transcription regulator related protein Back     alignment and domain information
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional Back     alignment and domain information
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional Back     alignment and domain information
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional Back     alignment and domain information
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase Back     alignment and domain information
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed Back     alignment and domain information
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic Back     alignment and domain information
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] Back     alignment and domain information
>TIGR00032 argG argininosuccinate synthase Back     alignment and domain information
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases Back     alignment and domain information
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed Back     alignment and domain information
>PLN00200 argininosuccinate synthase; Provisional Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases Back     alignment and domain information
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI Back     alignment and domain information
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>PRK00109 Holliday junction resolvase-like protein; Reviewed Back     alignment and domain information
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria Back     alignment and domain information
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
2gm3_A175 Crystal Structure Of An Universal Stress Protein Fa 9e-17
1wjg_A137 Crystal Structure Of A Probable Atp Binding Protein 4e-09
1mjh_A162 Structure-Based Assignment Of The Biochemical Funct 2e-04
2jax_A 305 Universal Stress Protein Rv2623 From Mycobaterium T 3e-04
2pfs_A150 Crystal Structure Of Universal Stress Protein From 3e-04
3tnj_A150 Crystal Structure Of Universal Stress Protein From 3e-04
3hgm_A147 Universal Stress Protein Tead From The Trap Transpo 5e-04
3s3t_A146 Universal Stress Protein Uspa From Lactobacillus Pl 8e-04
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family Protein From Arabidopsis Thaliana At3g01520 With Amp Bound Length = 175 Back     alignment and structure 
Iteration: 1

 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 57/97 (58%)
Query: 94  AFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHI 153
           + YA+       R+S +     LL   +  C +  V  E+ +  GDPKD+ICQ  +++  
Sbjct: 66  SIYASPEDFRDXRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRP 125
Query: 154 DLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVK 190
           D LVVGSRGLG+ ++ F+G+VS +C  HA CP+  +K
Sbjct: 126 DFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVXTIK 162
>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From Thermus Themophilus Hb8 Length = 137 Back     alignment and structure
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of Hypothetical Protein Mj0577: A Test Case Of Structural Genomics Length = 162 Back     alignment and structure
>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium Tuberculosis Length = 305 Back     alignment and structure
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From Nitrosomonas Europaea Length = 150 Back     alignment and structure
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From Nitrosomonas Europaea With Amp Bound Length = 150 Back     alignment and structure
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter Teaabc Of Halomonas Elongata Length = 147 Back     alignment and structure
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum Length = 146 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 4e-51
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 1e-40
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 6e-34
2z08_A137 Universal stress protein family; uncharacterized c 1e-31
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 2e-31
3s3t_A146 Nucleotide-binding protein, universal stress PROT 2e-30
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 6e-30
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 1e-28
3tnj_A150 Universal stress protein (USP); structural genomic 2e-27
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 3e-27
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 1e-20
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 1e-26
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 2e-15
3fg9_A156 Protein of universal stress protein USPA family; A 4e-26
3loq_A 294 Universal stress protein; structural genomics, PSI 8e-26
3loq_A294 Universal stress protein; structural genomics, PSI 4e-24
3fdx_A143 Putative filament protein / universal stress PROT; 2e-25
3dlo_A155 Universal stress protein; unknown function, struct 9e-25
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 1e-23
3olq_A 319 Universal stress protein E; structural genomics, P 7e-20
3olq_A319 Universal stress protein E; structural genomics, P 2e-18
3mt0_A290 Uncharacterized protein PA1789; structural genomic 2e-15
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 3e-13
1q77_A138 Hypothetical protein AQ_178; structural genomics, 6e-07
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
 Score =  161 bits (409), Expect = 4e-51
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 20/177 (11%)

Query: 28  GKKKMKVMVAIDES---------AESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQ 78
           G +  KVMVA++ S              A +W L+ +         +      + ++HVQ
Sbjct: 2   GSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIV-------RSNTSDFKILLLHVQ 54

Query: 79  EPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEG 138
              +           + YA+      +R+S +     LL   +  C +  V  E+ +  G
Sbjct: 55  VVDED----GFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTG 110

Query: 139 DPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKEQ 195
           DPKD+ICQ  +++  D LVVGSRGLG+ ++ F+G+VS +C  HA CP++ +K   ++
Sbjct: 111 DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRNADE 167
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Length = 163 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Length = 137 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Length = 162 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} Length = 146 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} Length = 147 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Length = 170 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Length = 150 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Length = 156 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Length = 143 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Length = 155 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Length = 141 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Length = 138 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.95
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.95
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.94
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.94
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.94
3fg9_A156 Protein of universal stress protein USPA family; A 99.94
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.94
3tnj_A150 Universal stress protein (USP); structural genomic 99.94
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.93
2z08_A137 Universal stress protein family; uncharacterized c 99.93
3dlo_A155 Universal stress protein; unknown function, struct 99.93
3fdx_A143 Putative filament protein / universal stress PROT; 99.91
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.91
3loq_A294 Universal stress protein; structural genomics, PSI 99.91
3olq_A319 Universal stress protein E; structural genomics, P 99.91
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.91
3olq_A 319 Universal stress protein E; structural genomics, P 99.9
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.9
3loq_A 294 Universal stress protein; structural genomics, PSI 99.89
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.89
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 99.88
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.87
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.86
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.86
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 97.09
1wy5_A 317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 95.31
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 94.67
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 93.57
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 92.91
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 92.48
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 92.38
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 92.23
2l69_A134 Rossmann 2X3 fold protein; structural genomics, no 92.02
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 92.01
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 91.89
3rg8_A159 Phosphoribosylaminoimidazole carboxylase, PURE PR; 91.8
1u11_A182 PURE (N5-carboxyaminoimidazole ribonucleotide MUT; 91.15
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 91.07
3ors_A163 N5-carboxyaminoimidazole ribonucleotide mutase; is 91.07
3lp6_A174 Phosphoribosylaminoimidazole carboxylase catalyti; 90.91
3bl5_A219 Queuosine biosynthesis protein QUEC; PREQ1 biosynt 90.24
1efp_B252 ETF, protein (electron transfer flavoprotein); ele 90.19
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 90.17
1sur_A215 PAPS reductase; assimilatory sulfate reduction, 3- 90.02
1o4v_A183 Phosphoribosylaminoimidazole mutase PURE; structur 89.97
1o97_C 264 Electron transferring flavoprotein beta-subunit; F 89.46
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 89.42
1efv_B255 Electron transfer flavoprotein; electron transport 89.09
1k92_A 455 Argininosuccinate synthase, argininosuccinate SY; 88.48
3k32_A203 Uncharacterized protein MJ0690; predicted subunit 88.27
2wq7_A 543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 88.22
1zun_A 325 Sulfate adenylyltransferase subunit 2; beta barrel 88.0
2hma_A 376 Probable tRNA (5-methylaminomethyl-2-thiouridylat 87.94
2ejb_A189 Probable aromatic acid decarboxylase; phenylacryli 87.36
1ni5_A 433 Putative cell cycle protein MESJ; structural genom 87.21
2nz2_A 413 Argininosuccinate synthase; amino-acid biosynthesi 86.93
3ih5_A217 Electron transfer flavoprotein alpha-subunit; alph 86.33
2j07_A 420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 85.89
1owl_A 484 Photolyase, deoxyribodipyrimidine photolyase; DNA 85.31
1vl2_A 421 Argininosuccinate synthase; TM1780, structural gen 85.29
3rjz_A 237 N-type ATP pyrophosphatase superfamily; structural 84.36
2pg3_A232 Queuosine biosynthesis protein QUEC; YP_049261.1, 82.94
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 82.22
1iv0_A98 Hypothetical protein; rnaseh-like, YQGF, structura 82.03
1np7_A 489 DNA photolyase; protein with FAD cofactor; HET: DN 82.0
2h31_A425 Multifunctional protein ADE2; alpha-beta-alpha, li 81.95
2der_A 380 TRNA-specific 2-thiouridylase MNMA; protein-RNA co 80.25
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.95  E-value=3.8e-27  Score=169.84  Aligned_cols=142  Identities=20%  Similarity=0.317  Sum_probs=124.7

Q ss_pred             CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCcCcccccChhhHHHHHHH
Q 046290           29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKS  108 (197)
Q Consensus        29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (197)
                      +++++||||+|+++.+..++++|+.+          |+..+++|+++||++.........          ........+.
T Consensus         3 ~~~~~ILv~~D~s~~s~~al~~A~~l----------a~~~~a~l~ll~v~~~~~~~~~~~----------~~~~~~~~~~   62 (146)
T 3s3t_A            3 ARYTNILVPVDSSDAAQAAFTEAVNI----------AQRHQANLTALYVVDDSAYHTPAL----------DPVLSELLDA   62 (146)
T ss_dssp             CCCCEEEEECCSSHHHHHHHHHHHHH----------HHHHTCEEEEEEEEECCCCCCGGG----------HHHHHHHHHH
T ss_pred             CccceEEEEcCCCHHHHHHHHHHHHH----------HHhcCCEEEEEEEecCcccccccc----------ccccHHHHHH
Confidence            56899999999999999999999999          888899999999998764321110          0133455677


Q ss_pred             HHHHHHHHHHHHHHHhHhcCC-ceEEEEecCChhhHHHH-HHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCCcE
Q 046290          109 QEENSAALLSRALQMCKDKMV-KAESLVLEGDPKDMICQ-SAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPI  186 (197)
Q Consensus       109 ~~~~~~~~l~~~~~~~~~~~v-~~~~~~~~g~~~~~I~~-~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~pV  186 (197)
                      .++..++.++++.+.+...|+ ++++.+..|++.+.|++ ++++.++||||||+++++++.++++||++++++++++|||
T Consensus        63 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pV  142 (146)
T 3s3t_A           63 EAAHAKDAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNV  142 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCE
Confidence            778888899999999998899 99999999999999999 9999999999999999999999999999999999999999


Q ss_pred             EEEC
Q 046290          187 IIVK  190 (197)
Q Consensus       187 liv~  190 (197)
                      |+||
T Consensus       143 lvV~  146 (146)
T 3s3t_A          143 IVIR  146 (146)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene} Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* Back     alignment and structure
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A* Back     alignment and structure
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Back     alignment and structure
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0 Back     alignment and structure
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Back     alignment and structure
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 Back     alignment and structure
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Back     alignment and structure
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Back     alignment and structure
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Back     alignment and structure
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Back     alignment and structure
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Back     alignment and structure
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} Back     alignment and structure
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Back     alignment and structure
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Back     alignment and structure
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 Back     alignment and structure
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Back     alignment and structure
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 197
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 2e-32
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 2e-24
d2z3va1135 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 { 3e-22
d1tq8a_147 c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobac 2e-21
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 3e-15
d1q77a_138 c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex 2e-09
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 20/172 (11%)

Query: 33  KVMVAIDES---------AESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQR 83
           KVMVA++ S              A +W L+ +         +      + ++HVQ     
Sbjct: 3   KVMVAVNASTIKDYPNPSISCKRAFEWTLEKIV-------RSNTSDFKILLLHVQVV--- 52

Query: 84  FVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDM 143
                     + YA+      +R+S +     LL   +  C +  V  E+ +  GDPKD+
Sbjct: 53  -DEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDV 111

Query: 144 ICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVCPIIIVKPPKEQ 195
           ICQ  +++  D LVVGSRGLG+ ++ F+G+VS +C  HA CP++ +K   ++
Sbjct: 112 ICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRNADE 163
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Length = 135 Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 147 Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Length = 138 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.97
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.94
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.94
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.94
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.9
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.89
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 96.86
d3clsc1 262 Small, beta subunit of electron transfer flavoprot 95.51
d1efpb_246 Small, beta subunit of electron transfer flavoprot 95.09
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 94.09
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 94.04
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 93.96
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 93.82
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 93.62
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 93.04
d1efvb_252 Small, beta subunit of electron transfer flavoprot 92.83
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 92.54
d1gsoa2105 Glycinamide ribonucleotide synthetase (GAR-syn), N 91.87
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 91.21
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 89.94
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 89.38
d1p3y1_183 MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} 89.26
d1vbka1132 Hypothetical protein PH1313, C-terminal domain {Ar 88.1
d3clsd1192 Large, alpha subunit of electron transfer flavopro 87.97
d1g5qa_174 Epidermin modifying enzyme (peptidyl-cysteine deca 85.21
d2pjua1 186 Propionate catabolism operon regulatory protein Pr 84.89
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=1.2e-29  Score=184.48  Aligned_cols=155  Identities=19%  Similarity=0.233  Sum_probs=129.2

Q ss_pred             CCccEEEEEeCCCHHHHHHHHHHHHhcccccCCCCCCCCCCcEEEEEEeecCCcccccccCCc----CcccccChhhHHH
Q 046290           29 KKKMKVMVAIDESAESFNALKWALDNLYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALST----SSAFYATSSMVES  104 (197)
Q Consensus        29 ~~~~~Ilv~vd~s~~s~~al~~a~~l~~~~~~~~~~A~~~~~~l~lv~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~  104 (197)
                      +|++|||||+|+|+.+.++++||..+          |+..+++|+++||+++...........    .......+.....
T Consensus         1 ~m~~~ILvavD~s~~s~~al~~a~~l----------a~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (160)
T d1mjha_           1 VMYKKILYPTDFSETAEIALKHVKAF----------KTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENE   70 (160)
T ss_dssp             CCCCEEEEECCSCHHHHHHHHHHHHT----------CCSSCCEEEEEEEEEGGGTC-----------------CHHHHHH
T ss_pred             CCcCeEEEEECCCHHHHHHHHHHHHH----------HHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHH
Confidence            36899999999999999999999999          999999999999988765332211111    1111222344555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhcCCceEEEEecCChhhHHHHHHHHcCCCEEEEccCCCCchhhhhccchhHHHhhcCCC
Q 046290          105 VRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHAVC  184 (197)
Q Consensus       105 ~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllVlG~~~~~~~~~~~~gs~~~~ll~~~~~  184 (197)
                      ..++..+..++.++.+.+.+...|+++++.+..|++.+.|++++++.++|+||||+++++++.++++||++++|+++++|
T Consensus        71 ~~~~~~~~~~~~l~~~~~~~~~~gv~~~~~~~~G~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~vl~~s~~  150 (160)
T d1mjha_          71 LKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNK  150 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccHHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHHHhcCCC
Confidence            66777888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEECCCC
Q 046290          185 PIIIVKPPK  193 (197)
Q Consensus       185 pVliv~~~~  193 (197)
                      ||||||++.
T Consensus       151 pVlvV~~~~  159 (160)
T d1mjha_         151 PVLVVKRKN  159 (160)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEEcCCC
Confidence            999999875
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Back     information, alignment and structure
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure