Citrus Sinensis ID: 046296

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
NKKDDDDDEKEGCEVEDDGGSYVQTMVMGGGLGNNGGKICGGRGGGDVGGGGGGSGFSGSNNNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLYL
Secondary Structure (PSIPRED)
ccccccHHHHHcHHHHccccccccHHHHHccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHcccccccccccccccEEEEcccccccccEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHcc
Coil and Loop (DISEMBL)
nkkdddddekegceveddggsYVQTMVMggglgnnggkicggrgggdvggggggsgfsgsnnnysnnnhgssstdaynekmieanpgnalLLGNYARFLKEVRGDFAKAEELCGRAilanpgdgniLSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLYL
Flexible Loop (DISEMBL)
nkkdddddekegceveddggsyVQTMVMGGGLGNNGGKICGGRGGGDVGGGGGGSGFSGSNNNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDqavksapddwLNLIKLYL
Low Complexity Region (SEG)
NkkdddddekegceveddggSYVQTMVMggglgnnggkicggrgggdvggggggsgfsgsnnnysnnnhgsssTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLYL
Disordered region (IsUnstruct)
**********************VQTMVMGGGL******************************************************GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLY*
Disordered Region (DISOPRED)
*************************MVMGGGLGNNGGKI**********GGGGGSGFSGSNNNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLYL
Disordered Region (DISEMBL)
***************EDDGGSYVQTMVMGGGLGNNGGKICGGRGGGDVGGGGGGSGFSGSNNNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH********YFDQAVKSAPDDWLNLIKLYL
Disordered Region (DISPRO)
********************SYVQTMVMGGGLGNNGGKICGGRGGGDVGGGGGGSGFSGSNNNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLYL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NKKDDDDDEKEGCEVEDDGGSYVQTMVMGGGLGNNGGKICGGRGGGDVGGGGGGSGFSGSNNNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
118486453	304	unknown [Populus trichocarpa]	0.832	0.457	0.618	1e-39
449436142	319	PREDICTED: uncharacterized protein LOC10	0.850	0.445	0.668	2e-38
356519331	315	PREDICTED: uncharacterized protein LOC10	0.790	0.419	0.609	8e-38
255553177	305	conserved hypothetical protein [Ricinus	0.562	0.308	0.776	3e-37
357478127	292	hypothetical protein MTR_4g114690 [Medic	0.580	0.332	0.721	3e-36
388492190	292	unknown [Medicago truncatula]	0.580	0.332	0.721	3e-36
217073634	292	unknown [Medicago truncatula]	0.580	0.332	0.721	4e-36
225445531	288	PREDICTED: uncharacterized protein LOC10	0.592	0.343	0.737	7e-36
356548565	257	PREDICTED: uncharacterized protein LOC10	0.556	0.361	0.741	3e-35
356562999	261	PREDICTED: uncharacterized protein LOC10	0.556	0.356	0.731	1e-34

>gi|118486453|gb|ABK95066.1| unknown [Populus trichocarpa]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 106/152 (69%), Gaps = 13/152 (8%)

Query: 11  EGCEV----EDDGGSYVQTMVMGGGLGNNGGKICGGRGGGDVGGGGGGSGFSGSNNNYSN 66
           EGCE     E D G  ++ +V GGG    G K CGGRG  D G  GG    SGS  +   
Sbjct: 109 EGCEAGEKGEGDNG-VLEVLVTGGGGDGGGRKFCGGRGRSDFGDDGG----SGSRES--- 160

Query: 67  NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI 126
            N G  +TDAY + MIEANPGN L L NYARFLKEVR DF KAEE CGRAILANP D ++
Sbjct: 161 -NEGIETTDAYYQTMIEANPGNPLFLRNYARFLKEVRLDFVKAEEYCGRAILANPNDADV 219

Query: 127 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158
           LS+YADLIWQ+HKDASRAESYF +AVK+APDD
Sbjct: 220 LSMYADLIWQSHKDASRAESYFLRAVKAAPDD 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436142|ref|XP_004135853.1| PREDICTED: uncharacterized protein LOC101208051 [Cucumis sativus] gi|449491043|ref|XP_004158782.1| PREDICTED: uncharacterized LOC101208051 [Cucumis sativus]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/148 (66%), Positives = 119/148 (80%), Gaps = 6/148 (4%)

Query: 11  EGCEVEDDGGSYVQTMVMGGGLGNNGGKICGGRGGGDVGGGGGGSGFSGSNNNYSNNNHG 70
           E C+ + D    +QT+V+GGG+GN+GG++CGG G G  GGGGG +G SG NN+     HG
Sbjct: 126 EVCDEKRDA-CILQTLVVGGGMGNDGGRVCGGSGRGSDGGGGGDNGRSGFNNH-----HG 179

Query: 71  SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLY 130
           S+STDAY +KMIEANP NALLLGNYA+FLKEV GDF+KAEE CGRAILA+P D ++LSLY
Sbjct: 180 SNSTDAYYQKMIEANPNNALLLGNYAKFLKEVHGDFSKAEEFCGRAILADPNDASVLSLY 239

Query: 131 ADLIWQAHKDASRAESYFDQAVKSAPDD 158
           ADLIW   +DA RAE+YFDQAVKSAPDD
Sbjct: 240 ADLIWHTQRDARRAETYFDQAVKSAPDD 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519331|ref|XP_003528326.1| PREDICTED: uncharacterized protein LOC100784802 [Glycine max]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 101/141 (71%), Gaps = 9/141 (6%)

Query: 21  SYVQTMVMGGGLGNNGGKICGG---RGGGDVGGGGGGSGFSGSNNNYSNNNHGSSSTDAY 77
           S++QT VMG G+G++GG ICGG    G G  GG G   GF         N+HG   TDAY
Sbjct: 122 SWLQTSVMGAGMGSDGGWICGGCNGSGRGSDGGHGRRWGFD------EGNDHGRDRTDAY 175

Query: 78  NEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQA 137
            + MIEANP +ALLLGNYA+FLKEV  D+ KA+E   RAILANP DG+ILSLYA+LIWQ 
Sbjct: 176 YQNMIEANPSDALLLGNYAKFLKEVCEDYPKAKEYLERAILANPDDGHILSLYAELIWQT 235

Query: 138 HKDASRAESYFDQAVKSAPDD 158
            KDA +AE YFDQA+KSAPDD
Sbjct: 236 EKDADQAEGYFDQAIKSAPDD 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553177|ref|XP_002517631.1| conserved hypothetical protein [Ricinus communis] gi|223543263|gb|EEF44795.1| conserved hypothetical protein [Ricinus communis]

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 83/94 (88%)

Query: 69  HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILS 128
           +G+ STDAY +KMI A+PGNALLLGNYA+FLKEV+GDFAKAEE CGRAILANP DGN+LS
Sbjct: 169 YGNESTDAYYQKMISADPGNALLLGNYAKFLKEVKGDFAKAEEFCGRAILANPSDGNVLS 228

Query: 129 LYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162
           +YADLIWQ  KDA RAESYFDQAVK+AP+D   L
Sbjct: 229 VYADLIWQKEKDAERAESYFDQAVKTAPEDCFVL 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478127|ref|XP_003609349.1| hypothetical protein MTR_4g114690 [Medicago truncatula] gi|355510404|gb|AES91546.1| hypothetical protein MTR_4g114690 [Medicago truncatula]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 82/97 (84%)

Query: 62  NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 121
           + + ++NHG+ STD Y   MIEANPGN L LGNYA++LKEVR D+ KAEE CGRAILANP
Sbjct: 150 SRFGDSNHGNDSTDLYYRTMIEANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANP 209

Query: 122 GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158
            DGN+LSLYADLIW+ HKDA RAE+YFDQAVK+APDD
Sbjct: 210 NDGNVLSLYADLIWECHKDAPRAETYFDQAVKAAPDD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492190|gb|AFK34161.1| unknown [Medicago truncatula]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 82/97 (84%)

Query: 62  NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 121
           + + ++NHG+ STD Y   MIEANPGN L LGNYA++LKEVR D+ KAEE CGRAILANP
Sbjct: 150 SRFGDSNHGNDSTDLYYRTMIEANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANP 209

Query: 122 GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158
            DGN+LSLYADLIW+ HKDA RAE+YFDQAVK+APDD
Sbjct: 210 NDGNVLSLYADLIWECHKDAPRAETYFDQAVKAAPDD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073634|gb|ACJ85177.1| unknown [Medicago truncatula]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 82/97 (84%)

Query: 62  NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 121
           + + ++NHG+ STD Y   MIEANPGN L LGNYA++LKEVR D+ KAEE CGRAILANP
Sbjct: 150 SRFGDSNHGNDSTDLYYRTMIEANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANP 209

Query: 122 GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158
            DGN+LSLYADLIW+ HKDA RAE+YFDQAVK+APDD
Sbjct: 210 NDGNVLSLYADLIWECHKDAPRAETYFDQAVKAAPDD 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445531|ref|XP_002285275.1| PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera] gi|297738966|emb|CBI28211.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 85/99 (85%)

Query: 64  YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD 123
           Y ++N+G+ + ++Y   MIEANPGNALLLGNYARFLKEVRGD+ KAEE CGRAILANP D
Sbjct: 142 YGDSNNGNGNMESYYRTMIEANPGNALLLGNYARFLKEVRGDYIKAEEYCGRAILANPND 201

Query: 124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL 162
           GNILSL+ADLIWQ HKD+ RAESYFDQAVK++PDD   L
Sbjct: 202 GNILSLFADLIWQVHKDSDRAESYFDQAVKASPDDCFVL 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548565|ref|XP_003542671.1| PREDICTED: uncharacterized protein LOC100784254 [Glycine max]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 81/93 (87%)

Query: 66  NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN 125
           ++N+G+ STD Y   MIEANPGN L LGNYAR+LKEVRGD+ KAEE CGRAILANP DG 
Sbjct: 116 DSNNGNDSTDLYYRTMIEANPGNPLFLGNYARYLKEVRGDYVKAEEYCGRAILANPNDGK 175

Query: 126 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158
           +LS+YADLIW++ KDASRAE+YFDQAVK+APDD
Sbjct: 176 VLSMYADLIWESQKDASRAETYFDQAVKAAPDD 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562999|ref|XP_003549754.1| PREDICTED: uncharacterized protein LOC100809777 [Glycine max]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 80/93 (86%)

Query: 66  NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN 125
           ++N+G+ STD Y   MIEANPGN L LGNYAR+LKEVRGD+ KAEE C RAILANP DG 
Sbjct: 120 DSNNGNDSTDLYYRTMIEANPGNPLFLGNYARYLKEVRGDYVKAEEYCSRAILANPNDGK 179

Query: 126 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158
           +LS+YADLIW++ KDASRAE+YFDQAVK+APDD
Sbjct: 180 VLSMYADLIWESQKDASRAETYFDQAVKAAPDD 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.508	0.293	0.658	7.1e-29
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.508	0.278	0.647	5.2e-26
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.544	0.382	0.591	1.6e-24
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.520	0.317	0.545	2.7e-20
TAIR|locus:2197768	310	TPR4 "tetratricopeptide repeat	0.485	0.261	0.426	1.3e-12
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.497	0.150	0.373	1.3e-09
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.497	0.154	0.373	1.8e-08
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.425	0.137	0.380	8.5e-06

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 56/85 (65%), Positives = 72/85 (84%)

Query:    74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL 133
             TD +  KMIEANPGN + L NYA+FLKEVR D+ KAEE CGRAIL +P DGN+L++YA+L
Sbjct:   156 TDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAEL 215

Query:   134 IWQAHKDASRAESYFDQAVKSAPDD 158
             +W+ HKD+SRAE+YF+QAV +AP+D
Sbjct:   216 VWKIHKDSSRAENYFNQAVAAAPED 240

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 55/85 (64%), Positives = 66/85 (77%)

Query:    74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL 133
             TD Y  +MI++NPGN+LL GNYA+FLKEV+GD  KAEE C RAIL N  DGN+LSLYADL
Sbjct:   165 TDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADL 224

Query:   134 IWQAHKDASRAESYFDQAVKSAPDD 158
             I   H+D  RA SY+ QAVK +P+D
Sbjct:   225 ILHNHQDRQRAHSYYKQAVKMSPED 249

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 55/93 (59%), Positives = 70/93 (75%)

Query:    75 DAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG-DGNILSLYADL 133
             D Y E+MI+  PG+ LLL NYARFLKEV+GD  KAEE C RA+L+  G DG +LS+Y DL
Sbjct:   111 DGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDL 170

Query:   134 IWQAHKDASRAESYFDQAVKSAPDDWLNLIKLY 166
             IW+ H D  RA+SY+DQAV+S+PDD  N++  Y
Sbjct:   171 IWKNHGDGVRAQSYYDQAVQSSPDD-CNVLASY 202

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 48/88 (54%), Positives = 60/88 (68%)

Query:    75 DAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLI 134
             D Y E M+ +NP N+LLL NY +FL EV  D   AEE  GRAIL NPGDG  LS+Y  LI
Sbjct:   152 DYYRE-MLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLI 210

Query:   135 WQAHKDASRAESYFDQAVKSAPDDWLNL 162
             W+  +D  RA+ YFDQAV ++P+D + L
Sbjct:   211 WETKRDEKRAQGYFDQAVNASPNDCMVL 238

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 35/82 (42%), Positives = 54/82 (65%)

Query:    77 YNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ 136
             Y + M+E  P + LLL NYA+FL E +GD + AEE   +  +  P DG  L+ Y  L+ +
Sbjct:   124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 182

Query:   137 AHKDASRAESYFDQAVKSAPDD 158
              H+D ++A SYF++AV+++PDD
Sbjct:   183 LHQDEAKAMSYFERAVQASPDD 204

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 31/83 (37%), Positives = 46/83 (55%)

Query:    74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL 133
             T+   +  +   PGN LLL NYA+FL  +  D+ +AE+   RA  A P D   L+ YA  
Sbjct:   435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query:   134 IWQAHKDASRAESYFDQAVKSAP 156
             +W+A  D  RAE  + +A+ + P
Sbjct:   495 LWRARNDIWRAEETYLEAISADP 517

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 31/83 (37%), Positives = 42/83 (50%)

Query:    74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL 133
             T+   +  +   P N LLL NYA+FL  V  D  +AEE   RA+   P D    S YA  
Sbjct:   420 TELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATF 479

Query:   134 IWQAHKDASRAESYFDQAVKSAP 156
             +W+A  D   AE  F +A+ + P
Sbjct:   480 LWRARDDLWAAEETFLEAIDADP 502

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 8.5e-06, P = 8.5e-06
 Identities = 27/71 (38%), Positives = 36/71 (50%)

Query:    86 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE 145
             P N LLL NYA+FL  V  D  +AE    +AI +   D    S YA  +W+   D   AE
Sbjct:   412 PDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIFLWKVRNDLWAAE 471

Query:   146 SYFDQAVKSAP 156
               F +A+ + P
Sbjct:   472 ENFLEAISADP 482


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      167       103   0.00091  102 3  11 22  0.42    30
                                                     29  0.49    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  122 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.27u 0.07s 10.34t   Elapsed:  00:00:03
  Total cpu time:  10.27u 0.07s 10.34t   Elapsed:  00:00:03
  Start:  Sat May 11 05:41:10 2013   End:  Sat May 11 05:41:13 2013

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	5e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.003

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 88  NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY 147
           NA  L N    L +  GD+ +A E   +A+  +P +       A    +  KD   A   
Sbjct: 2   NAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 148 FDQAVKSAP 156
            ++A++  P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 62  NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 121
           N Y        + + Y EK +E +P NA    N A    +  G + +A E   +A+  +P
Sbjct: 8   NLYYKLGDYDEALEYY-EKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDP 65

Query: 122 GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 157
            +           ++  K    A   +++A++  P+
Sbjct: 66  DNAKAYYNLGLAYYKLGKYE-EALEAYEKALELDPN 100

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 85  NPGNALLLGNYARFLKEVRGDFAKAEELCGRAI----LANPGDGNILSLYADL--IWQAH 138
           +P  A  L N A  L+   GD+ +A EL  +A+                  +L  ++ A 
Sbjct: 1   HPDLAAALNNLALVLRR-LGDYDEALELLEKALELARELGEDHPETARALNNLARLYLAL 59

Query: 139 KDASRAESYFDQAVKSAPD 157
            D   A  Y ++A+     
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 103 RGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 158
            GD+ +A      A+   P     L L  + + +     + A +    A+ + PDD
Sbjct: 10  AGDYDEALAALEAALARYPLAAEALLLLGEALLRQ-GRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 79  EKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 121
           EK +E +P NA    N A    ++  D+ +A E   +A+  +P
Sbjct: 27  EKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 76  AYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL-- 133
              EK +  +P   L     A       GD+ +A EL  +A+  +P    +      L  
Sbjct: 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA 175

Query: 134 IWQAHKDASRAESYFDQAVKSAPDD----WLNLIKLYL 167
           + +A      A    ++A+K  PDD     LNL  LYL
Sbjct: 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PRK15359	144	type III secretion system chaperone protein SscB;	99.72
KOG0553	304	consensus TPR repeat-containing protein [General f	99.64
PRK11189	296	lipoprotein NlpI; Provisional	99.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.59
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.58
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.51
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.51
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.51
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.51
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.49
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.48
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.48
PRK12370	553	invasion protein regulator; Provisional	99.47
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.46
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.45
PRK15359	144	type III secretion system chaperone protein SscB;	99.44
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.42
PRK12370	553	invasion protein regulator; Provisional	99.41
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.4
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.37
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.37
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.37
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.36
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.36
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.36
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.35
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.35
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.34
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.34
KOG1126	638	consensus DNA-binding cell division cycle control	99.34
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.32
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.3
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.3
KOG1125	579	consensus TPR repeat-containing protein [General f	99.3
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.28
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.28
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.27
KOG1126	638	consensus DNA-binding cell division cycle control	99.26
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.25
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.25
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.24
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.22
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.21
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.21
PRK11189	296	lipoprotein NlpI; Provisional	99.21
PRK10803	263	tol-pal system protein YbgF; Provisional	99.2
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.19
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.18
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.17
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.15
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.13
PLN02789	320	farnesyltranstransferase	99.13
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.12
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.12
PF13371	73	TPR_9: Tetratricopeptide repeat	99.12
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.12
PLN02789	320	farnesyltranstransferase	99.12
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.11
PRK15331	165	chaperone protein SicA; Provisional	99.11
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.1
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.1
PF13371	73	TPR_9: Tetratricopeptide repeat	99.06
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.06
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.05
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.05
KOG2076	895	consensus RNA polymerase III transcription factor	99.04
PRK11906	458	transcriptional regulator; Provisional	99.04
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.02
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.02
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.99
PRK14574	822	hmsH outer membrane protein; Provisional	98.99
PRK14574	822	hmsH outer membrane protein; Provisional	98.98
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.97
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.96
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.95
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.94
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.93
KOG1125	579	consensus TPR repeat-containing protein [General f	98.93
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.91
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.9
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.89
PRK11906	458	transcriptional regulator; Provisional	98.88
PF12688	120	TPR_5: Tetratrico peptide repeat	98.88
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.87
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.86
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.83
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.82
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.81
KOG2003	840	consensus TPR repeat-containing protein [General f	98.79
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.79
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.78
KOG0553	304	consensus TPR repeat-containing protein [General f	98.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.75
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.74
KOG4234	271	consensus TPR repeat-containing protein [General f	98.74
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.73
PF13512	142	TPR_18: Tetratricopeptide repeat	98.73
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.73
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.71
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.71
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.7
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.7
KOG2076	895	consensus RNA polymerase III transcription factor	98.7
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.7
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.69
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.68
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.67
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.64
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.63
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.63
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.6
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.59
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.59
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.59
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.58
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.56
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.55
PF13431	34	TPR_17: Tetratricopeptide repeat	98.52
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.52
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.51
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.49
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.49
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.49
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.49
PF13431	34	TPR_17: Tetratricopeptide repeat	98.47
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.47
KOG1129	478	consensus TPR repeat-containing protein [General f	98.47
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.46
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.46
PF13428	44	TPR_14: Tetratricopeptide repeat	98.43
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.43
KOG4555	175	consensus TPR repeat-containing protein [Function	98.43
KOG1129	478	consensus TPR repeat-containing protein [General f	98.43
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.42
PRK10803	263	tol-pal system protein YbgF; Provisional	98.41
KOG2003	840	consensus TPR repeat-containing protein [General f	98.38
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.38
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.35
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.34
PF13428	44	TPR_14: Tetratricopeptide repeat	98.34
PF12688	120	TPR_5: Tetratrico peptide repeat	98.32
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.32
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.29
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.29
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.28
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	98.28
PRK15331	165	chaperone protein SicA; Provisional	98.27
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.27
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.25
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.24
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.24
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.21
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.18
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.16
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.16
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.15
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.12
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.09
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.08
PF13512	142	TPR_18: Tetratricopeptide repeat	98.08
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.06
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.05
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.0
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.0
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.99
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.99
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.99
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.99
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.94
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.93
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.89
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.87
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.86
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.85
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.84
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.84
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.78
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.77
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.74
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.73
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.71
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.67
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.66
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.66
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.61
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.59
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.58
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.5
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.5
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.49
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.48
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.46
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.45
PLN03077	857	Protein ECB2; Provisional	97.45
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.43
KOG4555	175	consensus TPR repeat-containing protein [Function	97.42
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.38
PLN03218	1060	maturation of RBCL 1; Provisional	97.36
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.34
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.33
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.31
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.3
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.28
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.27
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.27
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.26
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.26
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.26
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.26
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.24
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.22
PLN03218	1060	maturation of RBCL 1; Provisional	97.21
PRK04841	903	transcriptional regulator MalT; Provisional	97.21
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	97.2
KOG4234	271	consensus TPR repeat-containing protein [General f	97.18
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.17
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.16
PLN03077	857	Protein ECB2; Provisional	97.15
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.14
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.11
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.1
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.09
PRK10941	269	hypothetical protein; Provisional	97.09
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.08
KOG3364	149	consensus Membrane protein involved in organellar	97.07
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.05
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.05
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.02
PRK04841	903	transcriptional regulator MalT; Provisional	96.99
PRK10941	269	hypothetical protein; Provisional	96.99
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.96
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.95
KOG1310	758	consensus WD40 repeat protein [General function pr	96.94
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.93
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.92
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.92
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.88
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.84
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.84
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.83
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.83
KOG1586	288	consensus Protein required for fusion of vesicles	96.8
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.8
KOG2471	696	consensus TPR repeat-containing protein [General f	96.7
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.69
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.68
KOG1585	308	consensus Protein required for fusion of vesicles	96.68
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.62
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.6
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.55
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.52
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.47
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.38
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.31
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.3
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.28
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	96.27
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.0
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.98
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.97
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.94
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.87
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.87
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.86
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.82
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.77
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.58
KOG2300	629	consensus Uncharacterized conserved protein [Funct	95.54
KOG0529	421	consensus Protein geranylgeranyltransferase type I	95.48
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.46
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.41
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.4
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	95.38
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.38
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.33
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.27
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.26
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.04
KOG1586	288	consensus Protein required for fusion of vesicles	95.01
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.96
KOG3364	149	consensus Membrane protein involved in organellar	94.83
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.83
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.82
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	94.78
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.74
KOG1258	577	consensus mRNA processing protein [RNA processing	94.69
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.68
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.56
COG2912	269	Uncharacterized conserved protein [Function unknow	94.5
COG2912	269	Uncharacterized conserved protein [Function unknow	94.45
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.41
KOG2471	696	consensus TPR repeat-containing protein [General f	94.36
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.21
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.18
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.15
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.13
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.13
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.13
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.08
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.92
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.76
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.7
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.49
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.43
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	93.43
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.37
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	93.3
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.09
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.82
COG4455	273	ImpE Protein of avirulence locus involved in tempe	92.59
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.55
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	92.34
KOG0529	421	consensus Protein geranylgeranyltransferase type I	92.08
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	91.95
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	91.43
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.3
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	91.28
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	91.17
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.16
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	90.76
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	90.58
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	90.52
KOG1585	308	consensus Protein required for fusion of vesicles	90.51
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.2
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.08
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	89.94
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.93
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.91
KOG4814	872	consensus Uncharacterized conserved protein [Funct	89.89
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	89.87
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.87
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	89.73
KOG1258	577	consensus mRNA processing protein [RNA processing	89.59
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.58
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	89.44
TIGR02996	42	rpt_mate_G_obs repeat-companion domain TIGR02996.	89.35
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	89.06
COG3947	361	Response regulator containing CheY-like receiver a	89.04
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	88.71
COG3947	361	Response regulator containing CheY-like receiver a	88.52
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.4
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	88.36
COG4941	415	Predicted RNA polymerase sigma factor containing a	87.85
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.82
PF04212	69	MIT: MIT (microtubule interacting and transport) d	87.24
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.77
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.58
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	86.49
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	86.31
KOG2300	629	consensus Uncharacterized conserved protein [Funct	85.9
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	85.82
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.79
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	85.58
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	85.55
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.1
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.84
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	84.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	84.57
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	84.5
PHA02537	230	M terminase endonuclease subunit; Provisional	84.48
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	84.43
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	84.4
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	84.11
PF12854	34	PPR_1: PPR repeat	83.6
KOG4014	248	consensus Uncharacterized conserved protein (conta	83.54
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	83.28
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	82.94
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	82.66
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	82.57
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	82.35
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	81.92
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	81.91
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	81.8
KOG3783	546	consensus Uncharacterized conserved protein [Funct	81.78
smart00299	140	CLH Clathrin heavy chain repeat homology.	81.71
PLN03138	796	Protein TOC75; Provisional	81.01
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	80.88
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	80.56

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.72  E-value=1.2e-16  Score=120.45  Aligned_cols=100  Identities=13%  Similarity=-0.022  Sum_probs=94.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .++..++++++|+.+|++++.++|.++.++.++|.++. ..+++++|+.+|++|++++|+++.+++++|.++.. .|+++
T Consensus        32 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~  109 (144)
T PRK15359         32 YASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPG  109 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHH
Confidence            46678899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|++.|++|+++.|+++.++.+
T Consensus       110 eAi~~~~~Al~~~p~~~~~~~~  131 (144)
T PRK15359        110 LAREAFQTAIKMSYADASWSEI  131 (144)
T ss_pred             HHHHHHHHHHHhCCCChHHHHH
Confidence            9999999999999999877643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.64  E-value=1.2e-15  Score=126.57  Aligned_cols=99  Identities=18%  Similarity=0.161  Sum_probs=93.3

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      .++.++|.+|+..|.+||+++|+|+.++.|.|.+|. +.+.++.|++-|+.||.+||+...+|..|+.++.. +|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHH
Confidence            456689999999999999999999999999999997 89999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHhc
Q 046296          145 ESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++.|++||.++|+|..+..++
T Consensus       169 ~~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  169 IEAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             HHHHHhhhccCCCcHHHHHHH
Confidence            999999999999999766543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.60  E-value=1.4e-14  Score=120.70  Aligned_cols=96  Identities=11%  Similarity=0.025  Sum_probs=91.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+.+++++|+..|+++++++|+++.++++++.++. ..+++++|+..|++|++++|+++.++.++|.+++. .++++
T Consensus        72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~  149 (296)
T PRK11189         72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYE  149 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHH
Confidence            46778899999999999999999999999999999886 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q 046296          143 RAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~  160 (167)
                      +|++.|+++++++|+++.
T Consensus       150 eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        150 LAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHHHhCCCCHH
Confidence            999999999999999984

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.59  E-value=2.2e-14  Score=122.71  Aligned_cols=99  Identities=16%  Similarity=0.120  Sum_probs=93.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      +.++..+++++|+.+|++||+++|+++.+++++|.++. ..+++++|+..+++||+++|+++.+++++|.+++. +++++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHH
Confidence            45677889999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      +|+.+|+++++++|+++.+..
T Consensus        88 eA~~~~~~al~l~P~~~~~~~  108 (356)
T PLN03088         88 TAKAALEKGASLAPGDSRFTK  108 (356)
T ss_pred             HHHHHHHHHHHhCCCCHHHHH
Confidence            999999999999999987653

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.59  E-value=2.2e-14  Score=104.78  Aligned_cols=98  Identities=11%  Similarity=0.015  Sum_probs=92.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+..|+++++++|.++.++.+++.++. ..+++++|+.+|+++++++|.++.+++++|.++.. .++++
T Consensus        25 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~  102 (135)
T TIGR02552        25 YNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPE  102 (135)
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHH
Confidence            46777899999999999999999999999999999987 78999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +|+++|+++++++|+++...
T Consensus       103 ~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552       103 SALKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHHHHHhccccchHH
Confidence            99999999999999987643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.58  E-value=2.7e-14  Score=113.08  Aligned_cols=94  Identities=15%  Similarity=0.148  Sum_probs=60.3

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd--~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +|...+++++|+.+|+++++++|+++.++.++|.+++...++  +++|++++++|++++|+++.+++++|..+++ +|++
T Consensus        82 ~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~  160 (198)
T PRK10370         82 YYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADY  160 (198)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCH
Confidence            455666666666666666666666666666666654324444  3666666666666666666666666666666 6666


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 046296          142 SRAESYFDQAVKSAPDD  158 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~  158 (167)
                      ++|+.+|++++++.|.+
T Consensus       161 ~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        161 AQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHHHHHhhCCCC
Confidence            66666666666666644

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.52  E-value=2.8e-14  Score=127.98  Aligned_cols=102  Identities=21%  Similarity=0.134  Sum_probs=87.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+++++++|+.+|++||++.|+.+.++.|++.++. .+++...|+++|.+||.++|..++++.+||.++.. .|+..
T Consensus       396 ~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD-sGni~  473 (966)
T KOG4626|consen  396 SIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD-SGNIP  473 (966)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc-cCCcH
Confidence            46777888889999999999999999999999988887 68888899999999999999999999999888888 89999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhcc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKLY  166 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~yy  166 (167)
                      +|++.|+.||++.|+.|.+..|+.
T Consensus       474 ~AI~sY~~aLklkPDfpdA~cNll  497 (966)
T KOG4626|consen  474 EAIQSYRTALKLKPDFPDAYCNLL  497 (966)
T ss_pred             HHHHHHHHHHccCCCCchhhhHHH
Confidence            999999999999998887766653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.51  E-value=3.3e-13  Score=106.89  Aligned_cols=96  Identities=16%  Similarity=0.216  Sum_probs=88.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHcCC--HHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLI-WQAHKD--ASRA  144 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l-~~~~g~--~~eA  144 (167)
                      ..+.++++..++++|+.+|+|+..|..++.++. ..+++++|+.+|++|++++|+++.++..+|.++ +. .++  +++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~-~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQ-AGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCCCCcHHH
Confidence            467899999999999999999999999999886 899999999999999999999999999999986 45 677  5999


Q ss_pred             HHHHHHHHHhCCCCHHHHHhc
Q 046296          145 ESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +++++++++++|+++.++.++
T Consensus       130 ~~~l~~al~~dP~~~~al~~L  150 (198)
T PRK10370        130 REMIDKALALDANEVTALMLL  150 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHH
Confidence            999999999999999887654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.51  E-value=2.6e-13  Score=103.95  Aligned_cols=89  Identities=8%  Similarity=-0.072  Sum_probs=85.5

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      +...+++++|+..|+-++.++|.++..|++||.++. .++++++|+..|.+|+.++|++|.++.++|.+++. .|+.+.|
T Consensus        45 ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A  122 (157)
T PRK15363         45 LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYA  122 (157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHH
Confidence            456789999999999999999999999999999997 89999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHhC
Q 046296          145 ESYFDQAVKSA  155 (167)
Q Consensus       145 ~~~~e~Al~l~  155 (167)
                      ++.|+.||...
T Consensus       123 ~~aF~~Ai~~~  133 (157)
T PRK15363        123 IKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.51  E-value=9.9e-14  Score=124.48  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=91.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      -+|..+|.++-|+..|++||+++|+.+.+++|+|+.|. ..|+..+|+.+|.+||.+.|++++++++||.++.+ ++.++
T Consensus       294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~~~e  371 (966)
T KOG4626|consen  294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QGKIE  371 (966)
T ss_pred             EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hccch
Confidence            46888999999999999999999999999999999997 68999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|..+|++|++..|.-..++.|+
T Consensus       372 ~A~~ly~~al~v~p~~aaa~nNL  394 (966)
T KOG4626|consen  372 EATRLYLKALEVFPEFAAAHNNL  394 (966)
T ss_pred             HHHHHHHHHHhhChhhhhhhhhH
Confidence            99999999999988877776654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.51  E-value=1.9e-13  Score=110.28  Aligned_cols=92  Identities=20%  Similarity=0.262  Sum_probs=79.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      -|++++++..|..-+++||+++|+++.+|..+|.++. ..++.+.|.+.|++|+.++|++.++++|||.+|.. +|+|++
T Consensus        44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~e  121 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEE  121 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHH
Confidence            4778889999999999999999999999999988775 88999999999999999999999999999999888 888888


Q ss_pred             HHHHHHHHHHhCCCC
Q 046296          144 AESYFDQAVKSAPDD  158 (167)
Q Consensus       144 A~~~~e~Al~l~P~~  158 (167)
                      |.++|++|+.. |..
T Consensus       122 A~q~F~~Al~~-P~Y  135 (250)
T COG3063         122 AMQQFERALAD-PAY  135 (250)
T ss_pred             HHHHHHHHHhC-CCC
Confidence            88888888874 543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.49  E-value=1.6e-13  Score=110.66  Aligned_cols=99  Identities=21%  Similarity=0.246  Sum_probs=90.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--~P~~~~al~~lA~~l~~~~g~  140 (167)
                      .+|.+.++.+.|.+.|++||+++|++..+++||+.||+ .++++++|...|++|+..  -|..+.++.|+++|..+ +|+
T Consensus        77 ~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~-~gq  154 (250)
T COG3063          77 HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK-AGQ  154 (250)
T ss_pred             HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh-cCC
Confidence            46888899999999999999999999999999999999 799999999999999963  24567889999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHH
Q 046296          141 ASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ++.|..+|+++|+++|+++..+.
T Consensus       155 ~~~A~~~l~raL~~dp~~~~~~l  177 (250)
T COG3063         155 FDQAEEYLKRALELDPQFPPALL  177 (250)
T ss_pred             chhHHHHHHHHHHhCcCCChHHH
Confidence            99999999999999999987653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.48  E-value=1.4e-12  Score=92.16  Aligned_cols=99  Identities=11%  Similarity=0.056  Sum_probs=90.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~  136 (167)
                      ..+.+++++++|+..|+++++.+|++   +.+++.++.++. ..+++++|+.+|++++..+|++   +.++..++.++..
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~   88 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE   88 (119)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence            46778899999999999999999987   578889999987 7999999999999999999886   6789999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          137 AHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       137 ~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                       ++++++|+.+|+++++..|+++.+..
T Consensus        89 -~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        89 -LGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             -hCChHHHHHHHHHHHHHCcCChhHHH
Confidence             99999999999999999999987653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.48  E-value=5.7e-13  Score=86.97  Aligned_cols=93  Identities=19%  Similarity=0.192  Sum_probs=87.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+..|+++++..|+++.++..++.++. ..+++++|+.+|++++.+.|.+..++..++.++.. .++++
T Consensus         8 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   85 (100)
T cd00189           8 NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYE   85 (100)
T ss_pred             HHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHH
Confidence            45677899999999999999999999999999999987 78999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCC
Q 046296          143 RAESYFDQAVKSAPD  157 (167)
Q Consensus       143 eA~~~~e~Al~l~P~  157 (167)
                      +|+.++++++++.|+
T Consensus        86 ~a~~~~~~~~~~~~~  100 (100)
T cd00189          86 EALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHccCCC
Confidence            999999999999884

>PRK12370 invasion protein regulator; Provisional

Probab=99.47  E-value=5.9e-13  Score=119.56  Aligned_cols=92  Identities=15%  Similarity=0.143  Sum_probs=86.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      .+++++|+.++++|++++|+++.++..++.++. ..+++++|+.+|++|++++|+++.+++.+|.++.. +|++++|+.+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~  394 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQT  394 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            357899999999999999999999999998886 79999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHhCCCCHHH
Q 046296          148 FDQAVKSAPDDWLN  161 (167)
Q Consensus       148 ~e~Al~l~P~~~~~  161 (167)
                      |++|++++|.++.+
T Consensus       395 ~~~Al~l~P~~~~~  408 (553)
T PRK12370        395 INECLKLDPTRAAA  408 (553)
T ss_pred             HHHHHhcCCCChhh
Confidence            99999999998754

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.47  E-value=3.5e-13  Score=88.22  Aligned_cols=68  Identities=24%  Similarity=0.241  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 046296           87 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK-DASRAESYFDQAVKSAP  156 (167)
Q Consensus        87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g-~~~eA~~~~e~Al~l~P  156 (167)
                      +++.+|..+|.++. ..+++++|+.+|++||+++|+++.+++++|.+++. ++ ++++|+++|++||+++|
T Consensus         1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            46889999999997 89999999999999999999999999999999999 99 79999999999999998

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.46  E-value=8.3e-13  Score=119.51  Aligned_cols=99  Identities=22%  Similarity=0.161  Sum_probs=84.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|..++++++|+.+|+++|+++|+++.++..++.++. ..+++++|+.+|+++++++|+++.+++++|.+++. .++++
T Consensus       339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~  416 (615)
T TIGR00990       339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFA  416 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            45667788888999899988888888888888888876 68888888888888888888888888888888888 88888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      +|+.+|+++++++|++..++.
T Consensus       417 ~A~~~~~kal~l~P~~~~~~~  437 (615)
T TIGR00990       417 QAGKDYQKSIDLDPDFIFSHI  437 (615)
T ss_pred             HHHHHHHHHHHcCccCHHHHH
Confidence            888888888888888876654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.45  E-value=1.3e-12  Score=118.21  Aligned_cols=100  Identities=12%  Similarity=0.069  Sum_probs=86.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++++|+++.+++.++.++. ..+++++|+.+|+++++++|++..++.++|.+++. +++++
T Consensus       373 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~  450 (615)
T TIGR00990       373 SMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIA  450 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHH
Confidence            35667788999999999999999999999999998886 78999999999999999999999999999999888 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+.+|++++++.|+++.++.+
T Consensus       451 eA~~~~~~al~~~P~~~~~~~~  472 (615)
T TIGR00990       451 SSMATFRRCKKNFPEAPDVYNY  472 (615)
T ss_pred             HHHHHHHHHHHhCCCChHHHHH
Confidence            9999999999999988866543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.44  E-value=7.8e-13  Score=99.54  Aligned_cols=87  Identities=11%  Similarity=0.092  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus        74 A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      -+.+|+++++++|++   +..++.++. ..+++++|+.+|++++.++|.++.++..+|.++.. .+++++|+..|++|++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence            467899999999986   456788886 79999999999999999999999999999999999 9999999999999999


Q ss_pred             hCCCCHHHHHhc
Q 046296          154 SAPDDWLNLIKL  165 (167)
Q Consensus       154 l~P~~~~~l~~y  165 (167)
                      ++|+++.++.++
T Consensus        87 l~p~~~~a~~~l   98 (144)
T PRK15359         87 LDASHPEPVYQT   98 (144)
T ss_pred             cCCCCcHHHHHH
Confidence            999999887654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.42  E-value=1.7e-12  Score=123.48  Aligned_cols=96  Identities=18%  Similarity=0.184  Sum_probs=64.9

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      ++.+.+++++|+.+|+++++++|+++.++++++.++. ..+++++|+++|++|++++|+++.++.++|.++.. +|++++
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~e  695 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMAA  695 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHH
Confidence            4555566666676777777777777766666666665 56667777777777777777777777777776666 677777


Q ss_pred             HHHHHHHHHHhCCCCHHH
Q 046296          144 AESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~  161 (167)
                      |+.+|++|++++|++..+
T Consensus       696 A~~~l~~Al~l~P~~a~i  713 (987)
T PRK09782        696 TQHYARLVIDDIDNQALI  713 (987)
T ss_pred             HHHHHHHHHhcCCCCchh
Confidence            777777777776666443

>PRK12370 invasion protein regulator; Provisional

Probab=99.41  E-value=3.2e-12  Score=114.82  Aligned_cols=99  Identities=12%  Similarity=-0.005  Sum_probs=88.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .++...+++++|+.+|++|++++|+++.+++.++.++. ..+++++|+.++++|++++|.++.++..++.+++. .++++
T Consensus       346 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~e  423 (553)
T PRK12370        346 LINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGID  423 (553)
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHH
Confidence            35667899999999999999999999999999999987 89999999999999999999999887777777888 89999


Q ss_pred             HHHHHHHHHHHhC-CCCHHHHH
Q 046296          143 RAESYFDQAVKSA-PDDWLNLI  163 (167)
Q Consensus       143 eA~~~~e~Al~l~-P~~~~~l~  163 (167)
                      +|+.+++++++.. |+++.++.
T Consensus       424 eA~~~~~~~l~~~~p~~~~~~~  445 (553)
T PRK12370        424 DAIRLGDELRSQHLQDNPILLS  445 (553)
T ss_pred             HHHHHHHHHHHhccccCHHHHH
Confidence            9999999999885 77776543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.40  E-value=6.5e-13  Score=108.86  Aligned_cols=101  Identities=24%  Similarity=0.257  Sum_probs=88.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+.|+.++|+.+|+++|+++|+|+.++..++.++. ..++++++.+.+++..+..|.++..+..+|.+++. .++++
T Consensus       154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~~~  231 (280)
T PF13429_consen  154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGRYE  231 (280)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-HH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-ccccc
Confidence            46778899999999999999999999999999998886 78999999999999999989999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|+.+|+++++.+|+|+.++..|
T Consensus       232 ~Al~~~~~~~~~~p~d~~~~~~~  254 (280)
T PF13429_consen  232 EALEYLEKALKLNPDDPLWLLAY  254 (280)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHH
T ss_pred             ccccccccccccccccccccccc
Confidence            99999999999999999888665

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.37  E-value=5.9e-12  Score=116.05  Aligned_cols=100  Identities=11%  Similarity=0.011  Sum_probs=94.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +..+.+.+++|+.+++++++++|++..++.+++.+|. +.+++++|+..+++++..+|+++.+++.+|.++.+ .|++++
T Consensus        95 i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~  172 (694)
T PRK15179         95 ALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQ  172 (694)
T ss_pred             HHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHH
Confidence            3456789999999999999999999999999999998 89999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHhc
Q 046296          144 AESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      |+.+|+++++.+|+++.++.++
T Consensus       173 A~~~y~~~~~~~p~~~~~~~~~  194 (694)
T PRK15179        173 ADACFERLSRQHPEFENGYVGW  194 (694)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHH
Confidence            9999999999999999888765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.37  E-value=1.7e-11  Score=93.91  Aligned_cols=91  Identities=23%  Similarity=0.339  Sum_probs=81.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+..|+++++.+|+++.++..++.++. ..+++++|+++++++++++|.++.++.+++.++.. +++++
T Consensus        39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~  116 (234)
T TIGR02521        39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYE  116 (234)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHH
Confidence            45667889999999999999999999999999998886 78999999999999999999999999999988888 88888


Q ss_pred             HHHHHHHHHHHhC
Q 046296          143 RAESYFDQAVKSA  155 (167)
Q Consensus       143 eA~~~~e~Al~l~  155 (167)
                      +|+++|+++++..
T Consensus       117 ~A~~~~~~~~~~~  129 (234)
T TIGR02521       117 QAMQQFEQAIEDP  129 (234)
T ss_pred             HHHHHHHHHHhcc
Confidence            8888888888753

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.37  E-value=9.4e-12  Score=118.47  Aligned_cols=94  Identities=17%  Similarity=0.188  Sum_probs=89.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      +++++|+..|+++++++|+ +.++.+++.++. ..+++++|+.+|++|++++|+++.++.++|.++.. ++++++|+++|
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            8999999999999999996 999999999987 89999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHhCCCCHHHHHhc
Q 046296          149 DQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       149 e~Al~l~P~~~~~l~~y  165 (167)
                      ++|++++|+++.++.++
T Consensus       667 ~~AL~l~P~~~~a~~nL  683 (987)
T PRK09782        667 ERAHKGLPDDPALIRQL  683 (987)
T ss_pred             HHHHHhCCCCHHHHHHH
Confidence            99999999999887654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.36  E-value=1.4e-11  Score=94.69  Aligned_cols=98  Identities=18%  Similarity=0.271  Sum_probs=87.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK  139 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g  139 (167)
                      ..|...+++++|+.+|++++++.|+.   +.++.+++.++. ..+++++|+.+|++++.++|+++.++..++.++.. .+
T Consensus        43 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g  120 (172)
T PRK02603         43 MSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RG  120 (172)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cC
Confidence            46778899999999999999988764   468999999887 89999999999999999999999999999999988 77


Q ss_pred             C--------------HHHHHHHHHHHHHhCCCCHHHH
Q 046296          140 D--------------ASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       140 ~--------------~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +              +++|+++++++++++|++....
T Consensus       121 ~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~  157 (172)
T PRK02603        121 EKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEA  157 (172)
T ss_pred             ChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHH
Confidence            7              6889999999999999986443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.36  E-value=8e-12  Score=91.17  Aligned_cols=87  Identities=16%  Similarity=0.063  Sum_probs=81.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296           76 AYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus        76 ~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      +.|+++++++|+++.+...++.++. ..+++++|+.++++++.++|.++.++..++.+++. ++++++|+.+|+++++++
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999887 79999999999999999999999999999999999 999999999999999999


Q ss_pred             CCCHHHHHh
Q 046296          156 PDDWLNLIK  164 (167)
Q Consensus       156 P~~~~~l~~  164 (167)
                      |.++.++.+
T Consensus        82 p~~~~~~~~   90 (135)
T TIGR02552        82 PDDPRPYFH   90 (135)
T ss_pred             CCChHHHHH
Confidence            999877643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.36  E-value=3.4e-12  Score=82.75  Aligned_cols=64  Identities=23%  Similarity=0.410  Sum_probs=55.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296           94 NYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus        94 ~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      .+|..+. ..+++++|+++|+++++.+|+++.++..+|.+++. ++++++|+.+|+++++++|++|
T Consensus         2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence            4567776 78999999999999999999999999999999998 9999999999999999999886

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.35  E-value=2.2e-11  Score=93.33  Aligned_cols=98  Identities=22%  Similarity=0.284  Sum_probs=77.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~~~~al~~lA~~l~~~~g~  140 (167)
                      .+|...+++++|+.+|+++++.+|.++.++.+++.++. ..+++++|+++|++++...  |..+.++..++.+++. .++
T Consensus        73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~  150 (234)
T TIGR02521        73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGD  150 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCC
Confidence            46677788899999999999998888888888888776 6788888888888887753  4556677777877777 888


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH
Q 046296          141 ASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +++|+.+|+++++.+|+++.++
T Consensus       151 ~~~A~~~~~~~~~~~~~~~~~~  172 (234)
T TIGR02521       151 FDKAEKYLTRALQIDPQRPESL  172 (234)
T ss_pred             HHHHHHHHHHHHHhCcCChHHH
Confidence            8888888888888888776544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=5.5e-12  Score=110.09  Aligned_cols=101  Identities=19%  Similarity=0.084  Sum_probs=93.4

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +++|.-+.++++|+.+|++||++||+...+|..++.=+. .+.+..+|++.|++||+++|.|..+|+-+|.+|-. ++-+
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh  414 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMH  414 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcch
Confidence            467888899999999999999999999999999998665 68999999999999999999999999999999998 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHh
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      .=|+-||++|+++.|+|+++|..
T Consensus       415 ~YaLyYfqkA~~~kPnDsRlw~a  437 (559)
T KOG1155|consen  415 FYALYYFQKALELKPNDSRLWVA  437 (559)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHH
Confidence            99999999999999999988754

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.34  E-value=1.4e-11  Score=112.88  Aligned_cols=100  Identities=17%  Similarity=0.105  Sum_probs=78.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAK----AEELCGRAILANPGDGNILSLYADLIWQAH  138 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~----A~~~~~rAl~l~P~~~~al~~lA~~l~~~~  138 (167)
                      .++...+++++|+..|+++++++|+++.++++++.++. ..+++++    |+.+|++|++++|+++.++.++|.++.. +
T Consensus       220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~  297 (656)
T PRK15174        220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-T  297 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-C
Confidence            34556678888888888888888888888888887776 6777764    7888888888888888888888888887 8


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          139 KDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +++++|+.+|+++++++|+++.++.+
T Consensus       298 g~~~eA~~~l~~al~l~P~~~~a~~~  323 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLPYVRAM  323 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            88888888888888888887765543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.34  E-value=3.7e-12  Score=86.94  Aligned_cols=81  Identities=23%  Similarity=0.316  Sum_probs=73.5

Q ss_pred             CCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      ++++++|+.+|+++++.+|.  ++.+++.+|.+++ ..+++++|+.++++ +.++|.++..++.+|.++++ ++++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence            47899999999999999995  5777888999998 89999999999999 88999999999999999999 99999999


Q ss_pred             HHHHHH
Q 046296          146 SYFDQA  151 (167)
Q Consensus       146 ~~~e~A  151 (167)
                      ++|++|
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999986

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=2.1e-12  Score=115.96  Aligned_cols=92  Identities=16%  Similarity=0.148  Sum_probs=58.8

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES  146 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~  146 (167)
                      .+.++|+|..+|++||.++|.+..+|+.++.++. ++++++.|+-+|++|+++||.+..++..++.++.+ .++.++|++
T Consensus       467 ~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~  544 (638)
T KOG1126|consen  467 ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQ  544 (638)
T ss_pred             hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHH
Confidence            3445666666666666666666666666666654 56666666666666666666666666666666666 666666666


Q ss_pred             HHHHHHHhCCCCHH
Q 046296          147 YFDQAVKSAPDDWL  160 (167)
Q Consensus       147 ~~e~Al~l~P~~~~  160 (167)
                      +|++|+.++|.|+.
T Consensus       545 ~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  545 LYEKAIHLDPKNPL  558 (638)
T ss_pred             HHHHHHhcCCCCch
Confidence            66666666666653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.32  E-value=4.6e-11  Score=91.28  Aligned_cols=97  Identities=19%  Similarity=0.196  Sum_probs=83.8

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIW---  135 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~---  135 (167)
                      +..+..++++++|+..|++++++.|+.   +.++.++|.++. ..+++++|+.+|++|+.++|.....+.+++.++.   
T Consensus        42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            346778899999999999999998774   458999999886 8999999999999999999999999999999988   


Q ss_pred             ----HHcCCHH-------HHHHHHHHHHHhCCCCHH
Q 046296          136 ----QAHKDAS-------RAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       136 ----~~~g~~~-------eA~~~~e~Al~l~P~~~~  160 (167)
                          . +++++       +|+.+|++++..+|.+..
T Consensus       121 ~~~~~-~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        121 EQAIE-QGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             HHHHH-cccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence                6 67766       677777788889997653

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.30  E-value=2.2e-11  Score=99.49  Aligned_cols=100  Identities=17%  Similarity=0.069  Sum_probs=94.6

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      ..++++++..|+..++++.+++|+|+.+|+.++.+|. +.|+++.|...|.+|+++.|+++.++.|++..++. .|+++.
T Consensus       109 ~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~  186 (257)
T COG5010         109 NQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLED  186 (257)
T ss_pred             HHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHH
Confidence            4567899999999999999999999999999999986 89999999999999999999999999999999998 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHhc
Q 046296          144 AESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      |++++..+....|.++.+..|+
T Consensus       187 A~~lll~a~l~~~ad~~v~~NL  208 (257)
T COG5010         187 AETLLLPAYLSPAADSRVRQNL  208 (257)
T ss_pred             HHHHHHHHHhCCCCchHHHHHH
Confidence            9999999999988899888776

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.30  E-value=3.4e-11  Score=108.77  Aligned_cols=100  Identities=22%  Similarity=0.220  Sum_probs=83.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++.+|+++.++.+++.++. ..++ .+|+.++++++.+.|+++.++..++.+++. .++++
T Consensus       778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~  854 (899)
T TIGR02917       778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEAD  854 (899)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHH
Confidence            35667788888888888888888888888888888776 6777 778888888888888888888888888888 89999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|+++|+++++++|.++.+..++
T Consensus       855 ~A~~~~~~a~~~~~~~~~~~~~l  877 (899)
T TIGR02917       855 RALPLLRKAVNIAPEAAAIRYHL  877 (899)
T ss_pred             HHHHHHHHHHhhCCCChHHHHHH
Confidence            99999999999999888766543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=3.9e-12  Score=112.92  Aligned_cols=93  Identities=14%  Similarity=0.026  Sum_probs=88.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      -+|...++|++|+.+|+.||..+|+|...|+.|+-+|. ...+.++|+..|.||+++.|....+++++|+.++. +|.|.
T Consensus       438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~yk  515 (579)
T KOG1125|consen  438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGAYK  515 (579)
T ss_pred             HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhhHH
Confidence            46778889999999999999999999999999999997 78889999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCC
Q 046296          143 RAESYFDQAVKSAPD  157 (167)
Q Consensus       143 eA~~~~e~Al~l~P~  157 (167)
                      ||+++|..||.+.+.
T Consensus       516 EA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  516 EAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999998775

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.28  E-value=5.1e-11  Score=109.25  Aligned_cols=97  Identities=18%  Similarity=0.097  Sum_probs=88.6

Q ss_pred             chhhcCCChHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296           63 NYSNNNHGSSS----TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH  138 (167)
Q Consensus        63 ~~y~~~g~~d~----A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~  138 (167)
                      .+|...+++++    |+.+|+++++++|+++.++.+++.++. ..+++++|+.+++++++++|+++.++.+++.++.. .
T Consensus       254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~  331 (656)
T PRK15174        254 LAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-V  331 (656)
T ss_pred             HHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-C
Confidence            45667788875    899999999999999999999999987 79999999999999999999999999999999999 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHH
Q 046296          139 KDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      |++++|+..|+++++.+|+++.+
T Consensus       332 G~~~eA~~~l~~al~~~P~~~~~  354 (656)
T PRK15174        332 GQYTAASDEFVQLAREKGVTSKW  354 (656)
T ss_pred             CCHHHHHHHHHHHHHhCccchHH
Confidence            99999999999999999988653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.28  E-value=6e-11  Score=110.35  Aligned_cols=99  Identities=15%  Similarity=0.049  Sum_probs=92.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++|+++|.++.++..++.++. ..+++++|+.+++++++.+|+++. +..++.++.. .++++
T Consensus        57 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~  133 (765)
T PRK10049         57 VAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHW  133 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHH
Confidence            46778899999999999999999999999999999886 799999999999999999999999 9999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+..|++++++.|+++.++..
T Consensus       134 ~Al~~l~~al~~~P~~~~~~~~  155 (765)
T PRK10049        134 DELRAMTQALPRAPQTQQYPTE  155 (765)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999999999887654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=3.1e-11  Score=106.55  Aligned_cols=102  Identities=15%  Similarity=0.118  Sum_probs=96.1

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      ++-+++.++|..|+.+|.+||+.+|+++..+.|.|.++. ..+.+..|++.++++|+++|+....|...|.+++. +.+|
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~y  442 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEY  442 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHH
Confidence            456789999999999999999999999999999999886 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++|+..|+++++.+|++..++..|
T Consensus       443 dkAleay~eale~dp~~~e~~~~~  466 (539)
T KOG0548|consen  443 DKALEAYQEALELDPSNAEAIDGY  466 (539)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHH
Confidence            999999999999999998877544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=3e-11  Score=108.61  Aligned_cols=100  Identities=16%  Similarity=0.122  Sum_probs=95.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      -+|.++++++.|+-+|++|+++||.|...+..++.++. ..++.++|+.+|++|+.++|.++-..+..+.+++. .++++
T Consensus       497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~-~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~-~~~~~  574 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH-QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS-LGRYV  574 (638)
T ss_pred             hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH-HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh-hcchH
Confidence            57899999999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+..+++.-++.|++..+++.
T Consensus       575 eal~~LEeLk~~vP~es~v~~l  596 (638)
T KOG1126|consen  575 EALQELEELKELVPQESSVFAL  596 (638)
T ss_pred             HHHHHHHHHHHhCcchHHHHHH
Confidence            9999999999999999877643

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.25  E-value=7.4e-11  Score=93.88  Aligned_cols=97  Identities=16%  Similarity=0.131  Sum_probs=87.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN---ILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~---al~~lA~~l~~  136 (167)
                      ..|+..+++++|+..|+++++.+|+++   .+++.++.++. ..+++++|+..|+++++..|+++.   +++.++.+++.
T Consensus        41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~  119 (235)
T TIGR03302        41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN  119 (235)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence            467788999999999999999999987   57799999887 899999999999999999998886   68889999987


Q ss_pred             Hc--------CCHHHHHHHHHHHHHhCCCCHHH
Q 046296          137 AH--------KDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       137 ~~--------g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                       .        +++++|++.|+++++..|+++.+
T Consensus       120 -~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  151 (235)
T TIGR03302       120 -QIDRVDRDQTAAREAFEAFQELIRRYPNSEYA  151 (235)
T ss_pred             -hcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence             5        78999999999999999998754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.25  E-value=8.6e-11  Score=109.29  Aligned_cols=98  Identities=19%  Similarity=0.145  Sum_probs=92.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .++...+++++|+..|+++++..|.++.++..+|.++. ..+++++|++.+++|++++|+++.+++.+|.++.. .++++
T Consensus       367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~-~~~~~  444 (765)
T PRK10049        367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD-LQEWR  444 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCCHH
Confidence            36677899999999999999999999999999999886 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +|++.++++++..|+++.+.
T Consensus       445 ~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        445 QMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.24  E-value=1.7e-11  Score=79.50  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=56.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG  124 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~  124 (167)
                      ..|+..+++++|+.+|+++++.+|+++.+++.++.++. .++++++|+.+|+++++++|++|
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            46788999999999999999999999999999999997 89999999999999999999986

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.1e-10  Score=97.22  Aligned_cols=96  Identities=21%  Similarity=0.121  Sum_probs=87.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g--d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      .+|+..+++..|...|++|+++.|+|+..+..||.+|+...+  +-.++..++++|++++|.|..+++.||..+++ +++
T Consensus       164 ~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~  242 (287)
T COG4235         164 RAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGD  242 (287)
T ss_pred             HHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-ccc
Confidence            588999999999999999999999999999999999874333  46889999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCH
Q 046296          141 ASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~  159 (167)
                      |.+|+..++..+++.|.+.
T Consensus       243 ~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         243 YAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHHHHHHhcCCCCC
Confidence            9999999999999988653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.22  E-value=1.7e-10  Score=111.46  Aligned_cols=56  Identities=23%  Similarity=0.306  Sum_probs=28.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296          104 GDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       104 gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      +++++|+++|++|++++|+++.+++.++.+++. ++++++|+..|+++++++|+++.
T Consensus       475 g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~-~G~~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        475 GKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ-AGQRSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHH
Confidence            444555555555555555555555555555554 55555555555555555555443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.21  E-value=1.9e-10  Score=103.95  Aligned_cols=99  Identities=17%  Similarity=0.182  Sum_probs=89.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+..|+++++.+|+++.++..++.++. ..+++++|++.++++++.+|.++.++..++.+++. +++++
T Consensus       133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~  210 (899)
T TIGR02917       133 LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNIE  210 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCHH
Confidence            45677789999999999999999999999999999886 78999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      +|+.+|+++++++|+++.++.
T Consensus       211 ~A~~~~~~a~~~~p~~~~~~~  231 (899)
T TIGR02917       211 LALAAYRKAIALRPNNPAVLL  231 (899)
T ss_pred             HHHHHHHHHHhhCCCCHHHHH
Confidence            999999999999999876553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.21  E-value=1.5e-10  Score=111.90  Aligned_cols=99  Identities=20%  Similarity=0.187  Sum_probs=86.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALL--------------LGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILS  128 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~--------------l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~  128 (167)
                      .+|.+++++++|+.+|+++++++|+++..              +...+.++. ..+++++|+.+|++|++++|+++.++.
T Consensus       311 ~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~-~~g~~~eA~~~~~~Al~~~P~~~~a~~  389 (1157)
T PRK11447        311 QAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL-KANNLAQAERLYQQARQVDNTDSYAVL  389 (1157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            57888899999999999999999987532              123355554 689999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          129 LYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       129 ~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      .+|.++.. ++++++|+++|++|++++|+++.++.
T Consensus       390 ~Lg~~~~~-~g~~~eA~~~y~~aL~~~p~~~~a~~  423 (1157)
T PRK11447        390 GLGDVAMA-RKDYAAAERYYQQALRMDPGNTNAVR  423 (1157)
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999 99999999999999999999987654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.21  E-value=2.3e-10  Score=95.35  Aligned_cols=94  Identities=14%  Similarity=0.058  Sum_probs=85.1

Q ss_pred             CChHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           69 HGSSSTDAYNEKMIEANP---G-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P---~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      ...+.++..+.++|...|   . .+.+|++++.++. ..+++++|+..|++|++++|+++.++.++|.++.. ++++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            567899999999997544   3 3677999999886 89999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHh
Q 046296          145 ESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +..|++|++++|++..++.+
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~  137 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLN  137 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999887754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.20  E-value=4.8e-10  Score=92.66  Aligned_cols=94  Identities=10%  Similarity=0.098  Sum_probs=86.5

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG---DGNILSLYADLIWQAHK  139 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~---~~~al~~lA~~l~~~~g  139 (167)
                      ++++++++|+..|++.++..|++   +.+++.+|.+++ ..+++++|+..|++++...|+   .+++++.++.++.. ++
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g  231 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KG  231 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cC
Confidence            45689999999999999999998   589999999987 899999999999999998887   57888999999999 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHH
Q 046296          140 DASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      ++++|+.+|+++++..|+...+
T Consensus       232 ~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        232 DTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             CHHHHHHHHHHHHHHCcCCHHH
Confidence            9999999999999999998754

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.19  E-value=4.2e-11  Score=78.26  Aligned_cols=58  Identities=26%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANP  121 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g-d~e~A~~~~~rAl~l~P  121 (167)
                      ..|+..+++++|+.+|+++|+++|+++.+++++|.++. .++ ++++|++.|++||+++|
T Consensus        11 ~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   11 QIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence            56788899999999999999999999999999999987 788 79999999999999998

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.18  E-value=2.8e-10  Score=105.08  Aligned_cols=100  Identities=15%  Similarity=0.052  Sum_probs=91.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+..+++++++|+..++++++.+|+++.+++.+|.+|. ..+++++|+.+|+++++.+|+++.++..+|.++.. .|+.+
T Consensus       128 ~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-~G~~~  205 (694)
T PRK15179        128 RGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-RGALW  205 (694)
T ss_pred             HHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHH
Confidence            35667789999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|...|++|++...+-...+.+
T Consensus       206 ~A~~~~~~a~~~~~~~~~~~~~  227 (694)
T PRK15179        206 RARDVLQAGLDAIGDGARKLTR  227 (694)
T ss_pred             HHHHHHHHHHHhhCcchHHHHH
Confidence            9999999999987655544433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=3.3e-10  Score=97.48  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=89.1

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANP----GN-----------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI  126 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P----~n-----------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a  126 (167)
                      ++.|++.++|..|...|++|+..=+    .+           ..+++|+|.++. .++++.+|+.+|.++|+++|+|.-+
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhH
Confidence            4789999999999999999887633    11           235788998886 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ++..|.++.. +++|+.|+..|++|++++|+|..+..
T Consensus       294 LyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~  329 (397)
T KOG0543|consen  294 LYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARA  329 (397)
T ss_pred             HHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            9999999999 99999999999999999999987654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.15  E-value=1.4e-10  Score=75.47  Aligned_cols=64  Identities=23%  Similarity=0.263  Sum_probs=35.9

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYA  131 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA  131 (167)
                      +++++++|+.+|+++++.+|+++.+++.++.++. ..+++++|+..+++++..+|+++.++..++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            3455555566666665556655555555555554 455555566555555555555555554444

...

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.13  E-value=1e-09  Score=92.72  Aligned_cols=93  Identities=16%  Similarity=0.151  Sum_probs=65.8

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-GNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-~~al~~lA~~l~~~~g~~~e  143 (167)
                      |..++++++|+.+|+++++.+|++..++..++.++. ..+++++|+++|+++++.+|.+ ..++..++.++.. .+++++
T Consensus       190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~  267 (389)
T PRK11788        190 ALARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDEAE  267 (389)
T ss_pred             HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHHH
Confidence            445677777777777777777777777777777665 6777777777777777777765 3455666666666 777777


Q ss_pred             HHHHHHHHHHhCCCCH
Q 046296          144 AESYFDQAVKSAPDDW  159 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~  159 (167)
                      |+++++++++..|+..
T Consensus       268 A~~~l~~~~~~~p~~~  283 (389)
T PRK11788        268 GLEFLRRALEEYPGAD  283 (389)
T ss_pred             HHHHHHHHHHhCCCch
Confidence            7777777777777654

>PLN02789 farnesyltranstransferase

Probab=99.13  E-value=6.8e-10  Score=94.11  Aligned_cols=91  Identities=12%  Similarity=0.053  Sum_probs=59.8

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd--~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      ++++++.++.++++.+|++..+|+..+.++. ..++  +++++.+++++|+++|+|..+|.+.+.++.. .+++++|+++
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~  164 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEY  164 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHH
Confidence            4566666666666666666666666665553 3444  2556666667777777777777777766666 6777777777


Q ss_pred             HHHHHHhCCCCHHHH
Q 046296          148 FDQAVKSAPDDWLNL  162 (167)
Q Consensus       148 ~e~Al~l~P~~~~~l  162 (167)
                      ++++|+++|.|..++
T Consensus       165 ~~~~I~~d~~N~sAW  179 (320)
T PLN02789        165 CHQLLEEDVRNNSAW  179 (320)
T ss_pred             HHHHHHHCCCchhHH
Confidence            777777777776555

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.12  E-value=5.8e-10  Score=88.70  Aligned_cols=95  Identities=14%  Similarity=0.003  Sum_probs=82.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH----
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNAL---LLGNYARFLKEVR--------GDFAKAEELCGRAILANPGDGNIL----  127 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~---~l~~lA~~l~~~~--------gd~e~A~~~~~rAl~l~P~~~~al----  127 (167)
                      .+|++.+++++|+..|+++++..|+++.   +++.++.++. ..        +++++|++.|+++++.+|++..++    
T Consensus        78 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302        78 YAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY-NQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH-HhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            5778889999999999999999999886   6888888876 33        679999999999999999987553    


Q ss_pred             -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          128 -------------SLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       128 -------------~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                                   ..+|.+++. ++++.+|+..|+++++..|+++
T Consensus       157 ~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~  200 (235)
T TIGR03302       157 RMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTP  200 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCc
Confidence                         356778888 9999999999999999988765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.12  E-value=6.9e-10  Score=86.74  Aligned_cols=93  Identities=22%  Similarity=0.187  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEV---------RGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK--  139 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~---------~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g--  139 (167)
                      ++.|.+.++.....||.+++++++.+.+|.+.         ...+++|+.-|++||.++|+...+++.+|.++.. ++  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhh
Confidence            67899999999999999999999999887632         1347889999999999999999999999999876 33  


Q ss_pred             ---------CHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          140 ---------DASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       140 ---------~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                               .|++|..+|++|+.++|+|..++-+
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence                     3788999999999999999877644

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.12  E-value=4.8e-10  Score=73.84  Aligned_cols=65  Identities=23%  Similarity=0.208  Sum_probs=35.6

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSL  129 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~  129 (167)
                      +|.+++++++|+.+++++++++|+++.++..+|.++. ..+++.+|++.|+++++++|+++.+...
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            4455555555555555555555555555555555554 4555555555555555555555554433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.12  E-value=5.1e-10  Score=85.87  Aligned_cols=83  Identities=14%  Similarity=0.009  Sum_probs=76.5

Q ss_pred             HHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           80 KMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus        80 kAL~l~-P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      -...+. |+..+.++.+|..++ ..|++++|++.|+-+..++|.++..|++||.++.. ++++++|+..|.+|+.++|++
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence            445567 888899999999887 89999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHh
Q 046296          159 WLNLIK  164 (167)
Q Consensus       159 ~~~l~~  164 (167)
                      |....+
T Consensus       103 p~~~~~  108 (157)
T PRK15363        103 PQAPWA  108 (157)
T ss_pred             chHHHH
Confidence            987654

>PLN02789 farnesyltranstransferase

Probab=99.12  E-value=1.2e-09  Score=92.60  Aligned_cols=98  Identities=12%  Similarity=0.095  Sum_probs=88.0

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA-  141 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g-d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~-  141 (167)
                      ++.+.+..++|+..+.++|+++|++..+|...+.++. ..+ ++++|+.+++++++.+|++..+|++.+.++.. .++. 
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~-~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~  123 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLE-ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDA  123 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchh
Confidence            3455678999999999999999999999999999987 566 68999999999999999999999999999887 7764 


Q ss_pred             -HHHHHHHHHHHHhCCCCHHHHH
Q 046296          142 -SRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       142 -~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                       ++++.+++++|+++|.|..++.
T Consensus       124 ~~~el~~~~kal~~dpkNy~AW~  146 (320)
T PLN02789        124 ANKELEFTRKILSLDAKNYHAWS  146 (320)
T ss_pred             hHHHHHHHHHHHHhCcccHHHHH
Confidence             7889999999999999988774

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.11  E-value=1e-09  Score=92.73  Aligned_cols=97  Identities=16%  Similarity=0.181  Sum_probs=86.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n-~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      .+|.+.+++++|+.+|+++++.+|.+ +.++..++.++. ..+++++|+.+++++++.+|+...+ ..++.++.. .+++
T Consensus       222 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~-~g~~  298 (389)
T PRK11788        222 DLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ-ALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEE-QEGP  298 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHH-hCCH
Confidence            46778899999999999999999987 456778888886 7999999999999999999988655 889999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHH
Q 046296          142 SRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ++|+.+|+++++..|+++.++
T Consensus       299 ~~A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        299 EAAQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             HHHHHHHHHHHHhCcCHHHHH
Confidence            999999999999999987554

>PRK15331 chaperone protein SicA; Provisional

Probab=99.11  E-value=8.3e-10  Score=85.24  Aligned_cols=94  Identities=14%  Similarity=0.050  Sum_probs=87.7

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      +.++++++|+..|+-....+|.|+.+|..||.++. .++++++|+..|..|..++++||...+..|.+++. +++.++|+
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hCCHHHHH
Confidence            46789999999999999999999999999999987 89999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHhCCCCHHHH
Q 046296          146 SYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       146 ~~~e~Al~l~P~~~~~l  162 (167)
                      ..|+.++. .|.+..+.
T Consensus       126 ~~f~~a~~-~~~~~~l~  141 (165)
T PRK15331        126 QCFELVNE-RTEDESLR  141 (165)
T ss_pred             HHHHHHHh-CcchHHHH
Confidence            99999999 57776543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=3e-10  Score=99.93  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=79.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      |+++-.+++++|+.-|+++++++|+|..++..++..++ ++.++++++..|+.+++.-|+.++++..+|.+|.. +++|+
T Consensus       402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y-r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-qqqFd  479 (606)
T KOG0547|consen  402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY-RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD-QQQFD  479 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-HHhHH
Confidence            45555667888888888888888888888888888777 67888888888888888888888888888888888 88999


Q ss_pred             HHHHHHHHHHHhCCC
Q 046296          143 RAESYFDQAVKSAPD  157 (167)
Q Consensus       143 eA~~~~e~Al~l~P~  157 (167)
                      +|+++|++||.+.|.
T Consensus       480 ~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  480 KAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999999999887

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=9.6e-10  Score=96.25  Aligned_cols=97  Identities=9%  Similarity=0.036  Sum_probs=89.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      -|....+...|+..|++|++++|.+..+|+.+++++. .+....=|+-+|++|+++-|+|+..|..+|.+|.+ .++.++
T Consensus       373 EyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~e  450 (559)
T KOG1155|consen  373 EYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LNRLEE  450 (559)
T ss_pred             HHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHH
Confidence            4677788999999999999999999999999999986 89999999999999999999999999999999988 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q 046296          144 AESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l  162 (167)
                      |+++|.+|+....-+..++
T Consensus       451 AiKCykrai~~~dte~~~l  469 (559)
T KOG1155|consen  451 AIKCYKRAILLGDTEGSAL  469 (559)
T ss_pred             HHHHHHHHHhccccchHHH
Confidence            9999999999877655444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.06  E-value=1.2e-09  Score=71.99  Aligned_cols=65  Identities=22%  Similarity=0.242  Sum_probs=60.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296           97 RFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus        97 ~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      .++. ..+++++|++++++++.++|+++..+..+|.+++. ++++++|++.|+++++..|+++.+..
T Consensus         3 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            3454 79999999999999999999999999999999999 99999999999999999999987653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.06  E-value=5.6e-10  Score=91.46  Aligned_cols=98  Identities=22%  Similarity=0.168  Sum_probs=73.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~--P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      .+|...++++++...++++.+..  |.++.+|..+|.++. ..|+.++|+++|++||+++|+++.++..++.++.. .++
T Consensus       118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~  195 (280)
T PF13429_consen  118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGD  195 (280)
T ss_dssp             H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCH
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCC
Confidence            35566788888888888877655  678888888888775 78888888888888888888888888888888888 888


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH
Q 046296          141 ASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ++++.+++++..+..|+++.++
T Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~  217 (280)
T PF13429_consen  196 YDEAREALKRLLKAAPDDPDLW  217 (280)
T ss_dssp             HHHHHHHHHHHHHH-HTSCCHC
T ss_pred             hHHHHHHHHHHHHHCcCHHHHH
Confidence            8888888888777777666443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.05  E-value=5.5e-10  Score=72.59  Aligned_cols=61  Identities=25%  Similarity=0.325  Sum_probs=56.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ..+++++|+++|++++..+|+++.++..++.+++. .|++++|++++++++..+|+++.++.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            58999999999999999999999999999999999 99999999999999999999886653

...

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.05  E-value=1.6e-09  Score=88.65  Aligned_cols=100  Identities=21%  Similarity=0.131  Sum_probs=90.8

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      .|...++-+.+..+..+++..+|.++.++..++..+. ..+++..|+..+++|.+++|+|..+|+.+|.+|.+ .|++++
T Consensus        75 a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~  152 (257)
T COG5010          75 ALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDE  152 (257)
T ss_pred             HHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhH
Confidence            4555667778888888888889999999988888776 79999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHhc
Q 046296          144 AESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      |...|.+|+++.|++|.++.|+
T Consensus       153 Ar~ay~qAl~L~~~~p~~~nNl  174 (257)
T COG5010         153 ARRAYRQALELAPNEPSIANNL  174 (257)
T ss_pred             HHHHHHHHHHhccCCchhhhhH
Confidence            9999999999999999988775

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.04  E-value=2.9e-09  Score=98.63  Aligned_cols=100  Identities=21%  Similarity=0.275  Sum_probs=92.9

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      ++..+.+|++++|+..+.++|+++|.++.+|..||.++. .+|+.+++...+-.|--++|++...|..++....+ ++++
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i  223 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNI  223 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccH
Confidence            456677799999999999999999999999999999985 89999999999999999999999999999999998 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Q 046296          142 SRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      .+|+-+|.+||+.+|.+.....
T Consensus       224 ~qA~~cy~rAI~~~p~n~~~~~  245 (895)
T KOG2076|consen  224 NQARYCYSRAIQANPSNWELIY  245 (895)
T ss_pred             HHHHHHHHHHHhcCCcchHHHH
Confidence            9999999999999999876543

>PRK11906 transcriptional regulator; Provisional

Probab=99.04  E-value=2.2e-09  Score=94.21  Aligned_cols=89  Identities=9%  Similarity=0.090  Sum_probs=84.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      .+..+|.++-++|++++|.|+.++..+|.++. ..++++.|+..|++|+.++|+.+.+++.+|++++. .|+.++|++.+
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i  395 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI  395 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            57889999999999999999999999999886 67889999999999999999999999999999999 99999999999


Q ss_pred             HHHHHhCCCCH
Q 046296          149 DQAVKSAPDDW  159 (167)
Q Consensus       149 e~Al~l~P~~~  159 (167)
                      ++|++++|...
T Consensus       396 ~~alrLsP~~~  406 (458)
T PRK11906        396 DKSLQLEPRRR  406 (458)
T ss_pred             HHHhccCchhh
Confidence            99999999754

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.02  E-value=3.8e-09  Score=92.69  Aligned_cols=100  Identities=14%  Similarity=0.054  Sum_probs=93.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..++..+++++|+..++..++..|+|+.++...+.++. ..++.++|++.+++++.++|+.+....+||.+|++ .|++.
T Consensus       314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~  391 (484)
T COG4783         314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQ  391 (484)
T ss_pred             HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChH
Confidence            34566789999999999999999999999999999886 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+.++++.+..+|++|..|..
T Consensus       392 eai~~L~~~~~~~p~dp~~w~~  413 (484)
T COG4783         392 EAIRILNRYLFNDPEDPNGWDL  413 (484)
T ss_pred             HHHHHHHHHhhcCCCCchHHHH
Confidence            9999999999999999977654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.02  E-value=2.1e-09  Score=94.25  Aligned_cols=70  Identities=17%  Similarity=0.052  Sum_probs=66.4

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296           84 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI---LSLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus        84 l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a---l~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      .+|+++.+++|++.+|+ ..+++++|+.+|++||+++|+++.+   |+++|.+|.. +|++++|+.+|++||++.
T Consensus        70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence            68999999999999997 8999999999999999999999965   9999999999 999999999999999983

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.00  E-value=3.3e-09  Score=88.72  Aligned_cols=91  Identities=13%  Similarity=0.099  Sum_probs=81.3

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcC
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN----ILSLYADLIWQAHK  139 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~----al~~lA~~l~~~~g  139 (167)
                      ++..++++++|+..++++++++|+++.++..++.+++ ..+++++|+.++++++...|.++.    .+..++.++.. +|
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~G  200 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-RG  200 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-CC
Confidence            5677899999999999999999999999999999997 799999999999999999885443    35578999998 99


Q ss_pred             CHHHHHHHHHHHHHhCC
Q 046296          140 DASRAESYFDQAVKSAP  156 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P  156 (167)
                      ++++|+.+|++++...|
T Consensus       201 ~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         201 DYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CHHHHHHHHHHHhcccc
Confidence            99999999999987777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=2e-09  Score=94.83  Aligned_cols=96  Identities=13%  Similarity=0.079  Sum_probs=61.8

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +|..+++.++-...|.+|..+||+||.+++..+.+.+ ..+++++|++-|++|+.++|.++.++..++.++++ ++++++
T Consensus       369 ~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~  446 (606)
T KOG0547|consen  369 AYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAE  446 (606)
T ss_pred             HHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHH
Confidence            4455556666666666666666666666666666655 56666666666666666666666666666666666 666666


Q ss_pred             HHHHHHHHHHhCCCCHHH
Q 046296          144 AESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~  161 (167)
                      ++..|+.+++.-|+-+.+
T Consensus       447 ~m~~Fee~kkkFP~~~Ev  464 (606)
T KOG0547|consen  447 SMKTFEEAKKKFPNCPEV  464 (606)
T ss_pred             HHHHHHHHHHhCCCCchH
Confidence            666666666666665543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.99  E-value=4.4e-09  Score=98.79  Aligned_cols=100  Identities=15%  Similarity=0.003  Sum_probs=79.3

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +|..++++++|+..|+++++++|+++.++..++.++. ..++.++|++.+++++..+|.+... ..++.++.. ++++.+
T Consensus       111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~~~  187 (822)
T PRK14574        111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRNYD  187 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchHHH
Confidence            5666788888888888888888888888888777665 6788888888888888888886665 445555555 677777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHhcc
Q 046296          144 AESYFDQAVKSAPDDWLNLIKLY  166 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l~~yy  166 (167)
                      |++.|+++++++|+++.++..||
T Consensus       188 AL~~~ekll~~~P~n~e~~~~~~  210 (822)
T PRK14574        188 ALQASSEAVRLAPTSEEVLKNHL  210 (822)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHH
Confidence            88889999999898888776664

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.98  E-value=4.7e-09  Score=98.63  Aligned_cols=99  Identities=11%  Similarity=0.030  Sum_probs=76.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+..++++++.|+..|+++++.+|+++.+...++.++. ..++.++|+.++++++.-+|.....+..+|.++.. +++++
T Consensus        42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-~gdyd  119 (822)
T PRK14574         42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-EKRWD  119 (822)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHH
Confidence            34567789999999999999999999644447766665 67888888888888884344444444445668877 88888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      +|+++|+++++++|+++.++.
T Consensus       120 ~Aiely~kaL~~dP~n~~~l~  140 (822)
T PRK14574        120 QALALWQSSLKKDPTNPDLIS  140 (822)
T ss_pred             HHHHHHHHHHhhCCCCHHHHH
Confidence            888888888888888887664

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=8.5e-09  Score=85.93  Aligned_cols=96  Identities=20%  Similarity=0.154  Sum_probs=86.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH--KDASRAES  146 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~--g~~~eA~~  146 (167)
                      .+.++.+.-++.-|+.||+|++-|..|+.++. ..+++..|...|++|+++.|++++++..||.+++...  ..-.+|..
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            45888899999999999999999999999986 8999999999999999999999999999999887722  24568999


Q ss_pred             HHHHHHHhCCCCHHHHHhc
Q 046296          147 YFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       147 ~~e~Al~l~P~~~~~l~~y  165 (167)
                      .|++|++++|+|..++..|
T Consensus       215 ll~~al~~D~~~iral~lL  233 (287)
T COG4235         215 LLRQALALDPANIRALSLL  233 (287)
T ss_pred             HHHHHHhcCCccHHHHHHH
Confidence            9999999999999877544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=7e-09  Score=92.45  Aligned_cols=67  Identities=18%  Similarity=0.277  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           92 LGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus        92 l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      +.|++.++. ..+.+++|+.+|++||.+.|.++.++..+|.++.. +|+++.|+.+|.+||.++|+|..
T Consensus       458 ~~NLGH~~R-kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l-lgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  458 LNNLGHAYR-KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL-LGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             HHhHHHHHH-HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCccHH
Confidence            455565554 66788888888888888888888888888888887 88888888888888888888854

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.95  E-value=9.7e-09  Score=85.90  Aligned_cols=94  Identities=18%  Similarity=0.145  Sum_probs=78.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHH-------------------------------------HHHHHHHHHcCCH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLG-------------------------------------NYARFLKEVRGDF  106 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~-------------------------------------~lA~~l~~~~gd~  106 (167)
                      .+...+++++|..+++++++.+|+++.++.                                     .++.++. ..+++
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~  130 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQY  130 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCH
Confidence            455667888899989988888888876543                                     2222333 57899


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          107 AKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       107 e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      ++|+..++++++++|+++.++..++.++++ .+++++|+.++++++...|.++
T Consensus       131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~  182 (355)
T cd05804         131 DRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSS  182 (355)
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCc
Confidence            999999999999999999999999999999 9999999999999999988544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=4.9e-09  Score=92.82  Aligned_cols=102  Identities=16%  Similarity=0.100  Sum_probs=93.6

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +++.++.++++.|+.+|..||.++|.|-..+.|-...+. ..++|++|++--.+.++++|+=+..|..+|..++- .|+|
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~   86 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDY   86 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccH
Confidence            356678899999999999999999999888888777775 79999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++|+..|.+.|+.+|+|..+...+
T Consensus        87 ~eA~~ay~~GL~~d~~n~~L~~gl  110 (539)
T KOG0548|consen   87 EEAILAYSEGLEKDPSNKQLKTGL  110 (539)
T ss_pred             HHHHHHHHHHhhcCCchHHHHHhH
Confidence            999999999999999998776543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.93  E-value=5.4e-09  Score=95.71  Aligned_cols=95  Identities=14%  Similarity=0.101  Sum_probs=87.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE--LCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~--~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      ..+..++++.+|...|..|+.+||+++.....+|.++. ..|+..-|+.  .+..|++++|.++++|+.+|.++.. +|+
T Consensus       692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd  769 (799)
T KOG4162|consen  692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGD  769 (799)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccc
Confidence            45667789999999999999999999999999999986 7887666666  9999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCH
Q 046296          141 ASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~  159 (167)
                      .++|..+|+.|+++++.+|
T Consensus       770 ~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  770 SKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hHHHHHHHHHHHhhccCCC
Confidence            9999999999999999887

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=3.2e-09  Score=94.59  Aligned_cols=95  Identities=13%  Similarity=0.123  Sum_probs=88.5

Q ss_pred             CChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES  146 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P--~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~  146 (167)
                      ..+..-.++|..|...+|  .+|++...|+.+++ ..++|++|+.+|+.||..+|+|...|..||-.|.. -.+.++|+.
T Consensus       408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIs  485 (579)
T KOG1125|consen  408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAIS  485 (579)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHH
Confidence            457778889999999999  79999999998877 79999999999999999999999999999999998 899999999


Q ss_pred             HHHHHHHhCCCCHHHHHhc
Q 046296          147 YFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       147 ~~e~Al~l~P~~~~~l~~y  165 (167)
                      .|++||++.|...++++|+
T Consensus       486 AY~rALqLqP~yVR~RyNl  504 (579)
T KOG1125|consen  486 AYNRALQLQPGYVRVRYNL  504 (579)
T ss_pred             HHHHHHhcCCCeeeeehhh
Confidence            9999999999998888775

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.91  E-value=3.5e-09  Score=90.39  Aligned_cols=99  Identities=17%  Similarity=0.028  Sum_probs=93.0

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      ++-|++++.|++|+.||.++|.++|.||..+.|.|..+. ....+..|+.-|..||.++.....+|...+.+-+. +|..
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNN  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhH
Confidence            478999999999999999999999999999999999886 79999999999999999999999999999999998 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHH
Q 046296          142 SRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      .||.+-++.+|++.|++..+.
T Consensus       182 ~EAKkD~E~vL~LEP~~~ELk  202 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNIELK  202 (536)
T ss_pred             HHHHHhHHHHHhhCcccHHHH
Confidence            999999999999999976544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.90  E-value=1.2e-08  Score=76.35  Aligned_cols=85  Identities=19%  Similarity=0.201  Sum_probs=46.6

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      ++..+++++|+..|+++++..|++   +.+.+.+|.++. ..+++++|+..++. +.-.|-.+.++..+|.+++. +|++
T Consensus        58 ~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~  134 (145)
T PF09976_consen   58 AYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDY  134 (145)
T ss_pred             HHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCH
Confidence            444556666666666666655443   334555555554 55666666666544 33334445555556666665 6666


Q ss_pred             HHHHHHHHHHH
Q 046296          142 SRAESYFDQAV  152 (167)
Q Consensus       142 ~eA~~~~e~Al  152 (167)
                      ++|++.|++||
T Consensus       135 ~~A~~~y~~Al  145 (145)
T PF09976_consen  135 DEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHhC
Confidence            66666666553

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.89  E-value=2.3e-08  Score=76.31  Aligned_cols=97  Identities=14%  Similarity=0.061  Sum_probs=81.7

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCC
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKD  140 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n--~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~  140 (167)
                      +-...+..+...+.+.++.++.+  ..++++++.++. ..+++++|+.+|++|+.+.|+.   +.++.++|.++.. +++
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~   87 (168)
T CHL00033         10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGE   87 (168)
T ss_pred             ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCC
Confidence            33445777888887777787776  667788998876 7899999999999999998763   4689999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          141 ASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +++|+.+|++|++++|.+...+.+
T Consensus        88 ~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         88 HTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHH
Confidence            999999999999999998876543

>PRK11906 transcriptional regulator; Provisional

Probab=98.88  E-value=2.2e-08  Score=87.99  Aligned_cols=95  Identities=15%  Similarity=-0.004  Sum_probs=84.4

Q ss_pred             CChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMI---EANPGNALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPGDGNILSLYADLIWQA  137 (167)
Q Consensus        69 g~~d~A~~~~~kAL---~l~P~n~~~l~~lA~~l~~~--------~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~  137 (167)
                      ...++|+.+|.+|+   +++|..+.++..+|.++...        ..+..+|.++.++|++++|.|+.++..+|.+++. 
T Consensus       272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-  350 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-  350 (458)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-
Confidence            35778999999999   99999999999999876522        2356889999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          138 HKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       138 ~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      .++++.|+..|++|+.++|+.+.++..
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~  377 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDIASLYYY  377 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCccHHHHHH
Confidence            899999999999999999999877643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.88  E-value=6.8e-08  Score=71.11  Aligned_cols=89  Identities=13%  Similarity=0.120  Sum_probs=79.9

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG---DGNILSLYADLIWQA  137 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~---~~~al~~lA~~l~~~  137 (167)
                      +|...|+.++|+.+|+++++..+..   ..++..++..+. ..|++++|+..+++++...|+   +..+...++.++.. 
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-   87 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-   87 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-
Confidence            4667799999999999999986665   467888999997 899999999999999999898   88899999999999 


Q ss_pred             cCCHHHHHHHHHHHHHh
Q 046296          138 HKDASRAESYFDQAVKS  154 (167)
Q Consensus       138 ~g~~~eA~~~~e~Al~l  154 (167)
                      .|++++|++.+..++.-
T Consensus        88 ~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   88 LGRPKEALEWLLEALAE  104 (120)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988764

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=2.6e-08  Score=81.79  Aligned_cols=95  Identities=16%  Similarity=0.213  Sum_probs=57.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK---DASRAE  145 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g---~~~eA~  145 (167)
                      ++.-+|++.+.+-++..|+++++|..++.++. ..++|++|.-++++.+-++|.++..+..||.+++- ++   +.+-|.
T Consensus       134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~eN~~~ar  211 (289)
T KOG3060|consen  134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAENLELAR  211 (289)
T ss_pred             CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            33444555555555555555566666666554 56666666666666666666666666666666665 44   344566


Q ss_pred             HHHHHHHHhCCCCHHHHHhc
Q 046296          146 SYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       146 ~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +||.+|++++|.+...+.-+
T Consensus       212 kyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  212 KYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHHhChHhHHHHHHH
Confidence            66666666666655555433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.86  E-value=2.9e-08  Score=64.25  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296           91 LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus        91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ++++++.++. ..+++++|+..++++++..|+++.++..++.++.. .+++++|+++|++++++.|.++.++
T Consensus         2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~   71 (100)
T cd00189           2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAY   71 (100)
T ss_pred             HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHH
Confidence            4677888886 79999999999999999999999999999999999 9999999999999999999987544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=4.7e-08  Score=80.26  Aligned_cols=100  Identities=15%  Similarity=0.158  Sum_probs=90.7

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      .+...+++++|+++|+..|+-||.|..++-..-.++. .+|+.-+|++.+..-++.-|+|+++|..++.+|+. .++|++
T Consensus        95 ~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~k  172 (289)
T KOG3060|consen   95 LLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFEK  172 (289)
T ss_pred             HHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHHH
Confidence            4566789999999999999999999998887665665 78988899999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHhc
Q 046296          144 AESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      |.-+|++.+-+.|.+|..+..|
T Consensus       173 A~fClEE~ll~~P~n~l~f~rl  194 (289)
T KOG3060|consen  173 AAFCLEELLLIQPFNPLYFQRL  194 (289)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHH
Confidence            9999999999999999877543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.82  E-value=4.8e-08  Score=87.74  Aligned_cols=88  Identities=13%  Similarity=0.004  Sum_probs=78.8

Q ss_pred             ChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l--~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      +.+++....++++.+  +|.++.++..++..+. ..+++++|+.++++|++++| +..++..+|.++.. .|++++|+..
T Consensus       399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~  475 (517)
T PRK10153        399 QLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADA  475 (517)
T ss_pred             HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            467788888887775  8888988888887765 78999999999999999999 58899999999999 9999999999


Q ss_pred             HHHHHHhCCCCHH
Q 046296          148 FDQAVKSAPDDWL  160 (167)
Q Consensus       148 ~e~Al~l~P~~~~  160 (167)
                      |++|++++|.+|.
T Consensus       476 ~~~A~~L~P~~pt  488 (517)
T PRK10153        476 YSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHhcCCCCch
Confidence            9999999999874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.81  E-value=8.1e-08  Score=73.70  Aligned_cols=75  Identities=19%  Similarity=0.174  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296           87 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus        87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ..+.++++++..+. ..+++++|+.+|++++++.|+.   +.++.++|.++.. .+++++|+.+|++++++.|+++..+.
T Consensus        33 ~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         33 KEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            45677889998886 7999999999999999988764   4689999999999 99999999999999999999887653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=2.9e-08  Score=87.37  Aligned_cols=101  Identities=17%  Similarity=0.112  Sum_probs=92.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ++-+.++++++|...|++||.-+..-.++++|++..+. ..+++++|+.+|-+.-.+--+++++++.+|.+|-. +.+..
T Consensus       498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~a  575 (840)
T KOG2003|consen  498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPA  575 (840)
T ss_pred             ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHH
Confidence            45567899999999999999999999999999998885 89999999999999988888999999999999988 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|+++|.++..+-|++|.++..+
T Consensus       576 qaie~~~q~~slip~dp~ilskl  598 (840)
T KOG2003|consen  576 QAIELLMQANSLIPNDPAILSKL  598 (840)
T ss_pred             HHHHHHHHhcccCCCCHHHHHHH
Confidence            99999999999999999988654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.79  E-value=1.7e-08  Score=92.16  Aligned_cols=100  Identities=17%  Similarity=0.090  Sum_probs=93.6

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      .++.++.++..+|+..++++|-.+..|++++.+.. +..++..|..+|.+.+.++|++.++|.|++.++.. .++-.+|.
T Consensus       496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~  573 (777)
T KOG1128|consen  496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAF  573 (777)
T ss_pred             ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHH
Confidence            34689999999999999999999999999998775 79999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHhccC
Q 046296          146 SYFDQAVKSAPDDWLNLIKLYL  167 (167)
Q Consensus       146 ~~~e~Al~l~P~~~~~l~~yy~  167 (167)
                      ..+++|++.+-.++.++.||.+
T Consensus       574 ~~l~EAlKcn~~~w~iWENyml  595 (777)
T KOG1128|consen  574 RKLKEALKCNYQHWQIWENYML  595 (777)
T ss_pred             HHHHHHhhcCCCCCeeeechhh
Confidence            9999999999888888888853

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=2.7e-08  Score=81.08  Aligned_cols=90  Identities=19%  Similarity=0.097  Sum_probs=83.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      +-|+....++.|+.+|.+||.++|..+.++.|-|.++. +..+++.+..-+++|++++|+....++.++.++.+ ...|+
T Consensus        18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~   95 (284)
T KOG4642|consen   18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYD   95 (284)
T ss_pred             ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hcccc
Confidence            34455568999999999999999999999999999886 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHh
Q 046296          143 RAESYFDQAVKS  154 (167)
Q Consensus       143 eA~~~~e~Al~l  154 (167)
                      +|+..+++|..+
T Consensus        96 eaI~~Lqra~sl  107 (284)
T KOG4642|consen   96 EAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999665

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=1.7e-08  Score=84.17  Aligned_cols=88  Identities=15%  Similarity=0.104  Sum_probs=76.0

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      ..+|.+.+.++.|++.++.||++||....+|..|+.++. .++++++|++.|+|||+++|++..++.+|-++-.. +.+.
T Consensus       122 AAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~-l~e~  199 (304)
T KOG0553|consen  122 AAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK-LNEP  199 (304)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH-hcCC
Confidence            357889999999999999999999999999999999887 89999999999999999999999999999887766 5554


Q ss_pred             H---HHHHHHHHH
Q 046296          142 S---RAESYFDQA  151 (167)
Q Consensus       142 ~---eA~~~~e~A  151 (167)
                      .   .+...++-+
T Consensus       200 ~~~~~~~~~~d~~  212 (304)
T KOG0553|consen  200 KSSAQASGSFDMA  212 (304)
T ss_pred             Ccccccccchhhh
Confidence            4   444444444

>TIGR00540 hemY_coli hemY protein

Probab=98.75  E-value=1.2e-07  Score=82.29  Aligned_cols=95  Identities=16%  Similarity=0.026  Sum_probs=70.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILANPGDG--NILSLYADLIWQA  137 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~--~al~~lA~~l~~~  137 (167)
                      ..+...+++++|+..++++++..|++...   .......+  ..++.+++++.++++++.+|+++  .++..+|.+++. 
T Consensus       271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l--~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-  347 (409)
T TIGR00540       271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL--KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-  347 (409)
T ss_pred             HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc--CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-
Confidence            35667788888888888888888888752   22111112  35677888888888888888888  778888888888 


Q ss_pred             cCCHHHHHHHHH--HHHHhCCCCHH
Q 046296          138 HKDASRAESYFD--QAVKSAPDDWL  160 (167)
Q Consensus       138 ~g~~~eA~~~~e--~Al~l~P~~~~  160 (167)
                      ++++++|+++|+  ++++..|++..
T Consensus       348 ~~~~~~A~~~le~a~a~~~~p~~~~  372 (409)
T TIGR00540       348 HGEFIEAADAFKNVAACKEQLDAND  372 (409)
T ss_pred             cccHHHHHHHHHHhHHhhcCCCHHH
Confidence            888888888888  57777776654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.74  E-value=1.5e-08  Score=67.62  Aligned_cols=67  Identities=22%  Similarity=0.358  Sum_probs=56.6

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           86 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-------PGDGNILSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus        86 P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-------P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      |+-+.++.++|.++. ..+++++|+.+|++|+++.       |.-+.++.++|.++.. ++++++|+++|++|+++
T Consensus         2 ~~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence            444678899999997 8999999999999999762       2236778899999999 99999999999999986

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=1.3e-07  Score=75.78  Aligned_cols=98  Identities=20%  Similarity=0.196  Sum_probs=86.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQA  137 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~-----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~  137 (167)
                      +-++.++++++|..-|.+||++-|.-+     ..+.|.|.++. ..+..+.|+.-|.+||+++|.+..++...|.+|-+ 
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-  180 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-  180 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-
Confidence            456788999999999999999999864     34556666664 78899999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          138 HKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       138 ~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +..|++|++-|++.++++|..-.+.
T Consensus       181 ~ek~eealeDyKki~E~dPs~~ear  205 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESDPSRREAR  205 (271)
T ss_pred             hhhHHHHHHHHHHHHHhCcchHHHH
Confidence            8999999999999999999876543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.73  E-value=7.8e-08  Score=82.44  Aligned_cols=73  Identities=15%  Similarity=0.062  Sum_probs=68.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~  136 (167)
                      .+|...+++++|+..++++|+++|+++.++++++.++. ..+++++|+.+|+++++++|+++.+...++.+...
T Consensus        44 ~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         44 QANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            57788899999999999999999999999999999987 89999999999999999999999999888887655

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.73  E-value=2.7e-07  Score=69.83  Aligned_cols=97  Identities=15%  Similarity=0.081  Sum_probs=84.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQA  137 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~~  137 (167)
                      ..++.+++++|+..|+.+....|-.   ..+.+.++.+++ ..+++++|+..+++.|+++|+++   .+++..|++.+. 
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~-   96 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE-   96 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH-
Confidence            3456789999999999999999986   467788888887 79999999999999999999875   677888888888 


Q ss_pred             cCC---------------HHHHHHHHHHHHHhCCCCHHHH
Q 046296          138 HKD---------------ASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       138 ~g~---------------~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +..               ..+|...|++.|+.-|+++++.
T Consensus        97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen   97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            665               7799999999999999998764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.73  E-value=9.3e-08  Score=67.20  Aligned_cols=69  Identities=17%  Similarity=0.122  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      +..++.++..+. ..+++++|++.|++++..+|++   +.+++.++.+++. .+++++|+.+|++++...|+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795         2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCC
Confidence            456788888886 7999999999999999999987   5788999999999 9999999999999999999864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.71  E-value=1.9e-07  Score=80.90  Aligned_cols=90  Identities=14%  Similarity=0.135  Sum_probs=43.7

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      +...++.++|...++++++. |.++.....++.+   ..++++++++.+++.++.+|+++..+..+|.++.. .+++++|
T Consensus       273 l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~~A  347 (398)
T PRK10747        273 LIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQEA  347 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            33445555555555555552 2233333333322   12455555555555555555555555555555555 5555555


Q ss_pred             HHHHHHHHHhCCCCH
Q 046296          145 ESYFDQAVKSAPDDW  159 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~  159 (167)
                      +++|++++++.|++.
T Consensus       348 ~~~le~al~~~P~~~  362 (398)
T PRK10747        348 SLAFRAALKQRPDAY  362 (398)
T ss_pred             HHHHHHHHhcCCCHH
Confidence            555555555555544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.71  E-value=1.5e-07  Score=81.98  Aligned_cols=93  Identities=22%  Similarity=0.249  Sum_probs=67.3

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES  146 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~  146 (167)
                      ..+.++.|+..|++..+.+|+   +...+|.++. ..++..+|++.++++|+.+|.+...+...+.++.. +++++.|++
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~  255 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALE  255 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence            346777888888887777765   3334566654 56677777888888887788777777777777777 777888888


Q ss_pred             HHHHHHHhCCCCHHHHHh
Q 046296          147 YFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       147 ~~e~Al~l~P~~~~~l~~  164 (167)
                      +.++|+++.|++...|..
T Consensus       256 iAk~av~lsP~~f~~W~~  273 (395)
T PF09295_consen  256 IAKKAVELSPSEFETWYQ  273 (395)
T ss_pred             HHHHHHHhCchhHHHHHH
Confidence            888888888877665543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.70  E-value=3.1e-07  Score=74.97  Aligned_cols=98  Identities=15%  Similarity=0.044  Sum_probs=80.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l---~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~  136 (167)
                      ..++.++++++|+..|+++++..|..+.+.   +.+|.+++ ..+++++|+..+++.|+.+|+++   .+++.+|.+.+.
T Consensus        40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~  118 (243)
T PRK10866         40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA  118 (243)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence            344567899999999999999999997665   78888887 79999999999999999998764   667777776533


Q ss_pred             HcC---------------C---HHHHHHHHHHHHHhCCCCHHHH
Q 046296          137 AHK---------------D---ASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       137 ~~g---------------~---~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                       .+               |   ..+|+..|++.|+.-|+..++-
T Consensus       119 -~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~  161 (243)
T PRK10866        119 -LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT  161 (243)
T ss_pred             -cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH
Confidence             22               1   2478899999999999987543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.70  E-value=3.6e-07  Score=75.39  Aligned_cols=96  Identities=14%  Similarity=0.116  Sum_probs=87.1

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHc
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAH  138 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~  138 (167)
                      +++.+++..|+..|+.-|+..|++   +.+++.|+.+++ .+++++.|...|.++++-.|++   |++++.+|.++.. +
T Consensus       151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l  228 (262)
T COG1729         151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-L  228 (262)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-h
Confidence            345688999999999999999996   688999999998 8999999999999999998754   6889999999999 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          139 KDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ++.++|...|+++++.-|..+.+.
T Consensus       229 ~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         229 GNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHH
Confidence            999999999999999999987543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.70  E-value=1.6e-07  Score=87.33  Aligned_cols=92  Identities=21%  Similarity=0.187  Sum_probs=87.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|..+|+.++|...+..|-.++|+++..|..++.... .++.+++|.-+|.|||..+|.+....+..+.++.+ +|+..
T Consensus       181 ~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~-~G~~~  258 (895)
T KOG2076|consen  181 EIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLYQK-TGDLK  258 (895)
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hChHH
Confidence            46788999999999999999999999999999998765 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCC
Q 046296          143 RAESYFDQAVKSAP  156 (167)
Q Consensus       143 eA~~~~e~Al~l~P  156 (167)
                      +|...|++++++.|
T Consensus       259 ~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  259 RAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHhhCC
Confidence            99999999999999

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.70  E-value=5.4e-08  Score=83.21  Aligned_cols=96  Identities=17%  Similarity=0.092  Sum_probs=89.9

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      .++.++++..|+..|-.|++.+|+|..+++..|.++. .+|+...|+.-+.+.|++.|+...+....+.++++ +|++++
T Consensus        47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~  124 (504)
T KOG0624|consen   47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQ  124 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHH
Confidence            4567789999999999999999999999999999886 89999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHhCCCCHHH
Q 046296          144 AESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~  161 (167)
                      |+.-|+++|+-+|++...
T Consensus       125 A~~DF~~vl~~~~s~~~~  142 (504)
T KOG0624|consen  125 AEADFDQVLQHEPSNGLV  142 (504)
T ss_pred             HHHHHHHHHhcCCCcchh
Confidence            999999999999977543

>TIGR00540 hemY_coli hemY protein

Probab=98.69  E-value=4e-07  Score=79.00  Aligned_cols=94  Identities=17%  Similarity=0.103  Sum_probs=50.0

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG-NILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~-~al~~lA~~l~~~~g~~~eA~  145 (167)
                      ..++++.|.+.+.++.+..|+...++...|.+.. .++++++|..+++++.+..|++. .+...++.++.. .+++++|+
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~-~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ-QRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHH
Confidence            3455555555555555555555555554455443 45555555555555555555543 334444555555 55555555


Q ss_pred             HHHHHHHHhCCCCHHHH
Q 046296          146 SYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       146 ~~~e~Al~l~P~~~~~l  162 (167)
                      +.++++++..|+++.++
T Consensus       174 ~~l~~l~~~~P~~~~~l  190 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVL  190 (409)
T ss_pred             HHHHHHHHhCCCCHHHH
Confidence            55555555555555443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=2.7e-07  Score=81.22  Aligned_cols=90  Identities=18%  Similarity=0.121  Sum_probs=77.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+++..++..+|++.+++++.++|+.+..+.+||.+|. ..+++.+|+.++.+.+..+|+++..|..||..+-. +|+..
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~  425 (484)
T COG4783         348 DILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRA  425 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchH
Confidence            46778899999999999999999999999999999997 89999999999999999999999999999998877 66555


Q ss_pred             HHHHHHHHHHHh
Q 046296          143 RAESYFDQAVKS  154 (167)
Q Consensus       143 eA~~~~e~Al~l  154 (167)
                      +|...+-+.+.+
T Consensus       426 ~a~~A~AE~~~~  437 (484)
T COG4783         426 EALLARAEGYAL  437 (484)
T ss_pred             HHHHHHHHHHHh
Confidence            555554444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.67  E-value=2.2e-07  Score=83.52  Aligned_cols=88  Identities=9%  Similarity=-0.016  Sum_probs=74.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcC
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEV-------RGDFAKAEELCGRAILA--NPGDGNILSLYADLIWQAHK  139 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~-------~gd~e~A~~~~~rAl~l--~P~~~~al~~lA~~l~~~~g  139 (167)
                      .++.+|+.+|++|++++|+++.++..++.++...       ..+.+++.+..++++.+  +|.++.++..+|..+.. .+
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g  434 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KG  434 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cC
Confidence            4588999999999999999999999887765421       12356777788887774  88889999999999888 99


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 046296          140 DASRAESYFDQAVKSAPD  157 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P~  157 (167)
                      ++++|+.+|++|+.++|+
T Consensus       435 ~~~~A~~~l~rAl~L~ps  452 (517)
T PRK10153        435 KTDEAYQAINKAIDLEMS  452 (517)
T ss_pred             CHHHHHHHHHHHHHcCCC
Confidence            999999999999999995

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.64  E-value=1.9e-07  Score=88.10  Aligned_cols=98  Identities=12%  Similarity=0.043  Sum_probs=79.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------------------
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG-------------------  124 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~-------------------  124 (167)
                      +|...+++++|++.++.+++.+|+.+.+++.+|.++. +.+++.+|...  +++.+-|.+.                   
T Consensus        40 ~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k  116 (906)
T PRK14720         40 AYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENK  116 (906)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhh
Confidence            4557789999999999999999999999999998655 66666555544  5555555544                   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          125 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      .+++.+|.+|-. +++.++|...|+++|+++|+|+.++.+|
T Consensus       117 ~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~  156 (906)
T PRK14720        117 LALRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKL  156 (906)
T ss_pred             HHHHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence            888889998888 8999999999999999999999888776

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.63  E-value=7.3e-07  Score=77.20  Aligned_cols=93  Identities=13%  Similarity=0.079  Sum_probs=73.3

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLG-NYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~-~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      .+++++++|..+|+++.+.+|++..+.. ..+.++. ..+++++|++.++++++.+|+++.++..++.++.. .+++++|
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-~gdw~~a  206 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-TGAWSSL  206 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhHHHH
Confidence            5668888888888888888888764443 2355554 68888888888888888888888888888888888 8888888


Q ss_pred             HHHHHHHHHhCCCCHH
Q 046296          145 ESYFDQAVKSAPDDWL  160 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~  160 (167)
                      ++++.+..+..+.++.
T Consensus       207 ~~~l~~l~k~~~~~~~  222 (398)
T PRK10747        207 LDILPSMAKAHVGDEE  222 (398)
T ss_pred             HHHHHHHHHcCCCCHH
Confidence            8888888887766544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.63  E-value=1.5e-07  Score=84.15  Aligned_cols=91  Identities=16%  Similarity=0.194  Sum_probs=81.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPGDGNI  126 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l--------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------~P~~~~a  126 (167)
                      ..|..++++++|+..|++||++        .|.-...+.++|.++. ..+++.+|+.+|++|+.+        +|.-+.+
T Consensus       207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~  285 (508)
T KOG1840|consen  207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT  285 (508)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4688899999999999999999        6766677777998886 899999999999999987        5666788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      +.+||.+|.. .|+|++|..++++|+++-
T Consensus       286 l~nLa~ly~~-~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  286 LNNLAVLYYK-QGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHHHHHHhc-cCChHHHHHHHHHHHHHH
Confidence            9999999999 999999999999999873

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.4e-07  Score=81.91  Aligned_cols=93  Identities=19%  Similarity=0.153  Sum_probs=84.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH  138 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~  138 (167)
                      +-.+++|++.+|.++|.++|.++|+|    +..+.|.|.+.. ..++..+|+.-+..|+.++|....++...|.++.. .
T Consensus       257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~-l  334 (486)
T KOG0550|consen  257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLA-L  334 (486)
T ss_pred             hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH-H
Confidence            34568899999999999999999986    456778888876 79999999999999999999999999999999999 9


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 046296          139 KDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l~P~  157 (167)
                      +++++|++.|++|+++..+
T Consensus       335 e~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  335 EKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHhhccc
Confidence            9999999999999998765

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=1.5e-07  Score=76.31  Aligned_cols=98  Identities=10%  Similarity=0.042  Sum_probs=91.2

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +.+|.+.|-++-|..-|.++|.++|+-|.+.+.++..+. ..++++.|.+.|...++++|..-.+..+.|+.++- -|++
T Consensus        72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~  149 (297)
T COG4785          72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRY  149 (297)
T ss_pred             cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCch
Confidence            357778888999999999999999999999999998886 79999999999999999999999999999998888 8999


Q ss_pred             HHHHHHHHHHHHhCCCCHHH
Q 046296          142 SRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~  161 (167)
                      .-|.+-|.+-.+.+|++|+-
T Consensus       150 ~LAq~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         150 KLAQDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             HhhHHHHHHHHhcCCCChHH
Confidence            99999999999999999964

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.59  E-value=9.5e-07  Score=76.99  Aligned_cols=86  Identities=17%  Similarity=0.132  Sum_probs=79.8

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +|...++..+|++.+.++|+.+|.++..+...|.+|. ..++++.|+++.++|+.+.|++...|+.|+.+|.. ++++++
T Consensus       209 v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~  286 (395)
T PF09295_consen  209 VYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFEN  286 (395)
T ss_pred             HHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHH
Confidence            4566778889999999999999999999999999996 89999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHH
Q 046296          144 AESYFDQA  151 (167)
Q Consensus       144 A~~~~e~A  151 (167)
                      |+..+..+
T Consensus       287 ALlaLNs~  294 (395)
T PF09295_consen  287 ALLALNSC  294 (395)
T ss_pred             HHHHHhcC
Confidence            99877644

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.59  E-value=4.9e-07  Score=71.51  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=76.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~  136 (167)
                      ..++.++++.+|+..|++++...|..   +.+++.++.+++ ..+++++|+..+++.++..|+++   .+++.+|.+++.
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~   91 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK   91 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence            34677899999999999999999986   577888998887 89999999999999999999875   678888888765


Q ss_pred             H----------cCCHHHHHHHHHHHHHhCCCCHHH
Q 046296          137 A----------HKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       137 ~----------~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      .          +....+|+..|+..|+.-|+++++
T Consensus        92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~  126 (203)
T PF13525_consen   92 QIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA  126 (203)
T ss_dssp             HHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred             hCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence            1          122358999999999999998754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.58  E-value=2.7e-07  Score=86.49  Aligned_cols=100  Identities=13%  Similarity=0.177  Sum_probs=86.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK--  139 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n-~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g--  139 (167)
                      ..|.++|++++|..+|.++++.+|++ ...++.+++++. ..++++.|+.+|++.++.+|++.+++..+|.+|.. ..  
T Consensus       315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~-~~~~  392 (1018)
T KOG2002|consen  315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH-SAKK  392 (1018)
T ss_pred             HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh-hhhh
Confidence            46778899999999999999999998 777888888875 79999999999999999999999999999988877 43  


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          140 --DASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       140 --~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                        ..++|..++.++++..|.+..++..
T Consensus       393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~  419 (1018)
T KOG2002|consen  393 QEKRDKASNVLGKVLEQTPVDSEAWLE  419 (1018)
T ss_pred             hHHHHHHHHHHHHHHhcccccHHHHHH
Confidence              5678999999999999988877644

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=5.2e-07  Score=76.47  Aligned_cols=95  Identities=13%  Similarity=0.121  Sum_probs=80.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQA  137 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~-----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~  137 (167)
                      .+|.+..++++|+..-++..++.|...     .++..||..+. ...+.++|+..++||++.||++..+-..+|.+... 
T Consensus       149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-  226 (389)
T COG2956         149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELA-  226 (389)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-
Confidence            367777889999999999999988763     45556666554 67889999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH
Q 046296          138 HKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       138 ~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      +|+|++|++.++++++.+|+..
T Consensus       227 ~g~y~~AV~~~e~v~eQn~~yl  248 (389)
T COG2956         227 KGDYQKAVEALERVLEQNPEYL  248 (389)
T ss_pred             ccchHHHHHHHHHHHHhChHHH
Confidence            9999999999999999998763

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=6.4e-07  Score=78.11  Aligned_cols=90  Identities=18%  Similarity=0.293  Sum_probs=82.5

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFD  149 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e  149 (167)
                      -.++|..+++++|+++|....+-+.+|.++. ..+.++.++.++++++..-|++ ..+..+|.++.. .+.+++|+.+|.
T Consensus       419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A-~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRA-QNEPQKAMEYYY  495 (564)
T ss_pred             hHHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHH-hhhHHHHHHHHH
Confidence            4689999999999999999999999999886 8999999999999999888776 567889999999 999999999999


Q ss_pred             HHHHhCCCCHHHH
Q 046296          150 QAVKSAPDDWLNL  162 (167)
Q Consensus       150 ~Al~l~P~~~~~l  162 (167)
                      .||+++|++...+
T Consensus       496 ~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  496 KALRQDPKSKRTL  508 (564)
T ss_pred             HHHhcCccchHHH
Confidence            9999999998765

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.52  E-value=1.1e-07  Score=54.80  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=17.3

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296          113 CGRAILANPGDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus       113 ~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      |+|||+++|+++.+|++||.+|.. .|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhc
Confidence            455555555555555555555555 55555553

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.52  E-value=3.3e-07  Score=76.76  Aligned_cols=101  Identities=15%  Similarity=0.043  Sum_probs=54.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g--d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      ++|.+.++++.|.+.++++-+.+.+...+...-+++.. ..|  .+.+|...|+......|.++.++..+|.+++. +++
T Consensus       139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~  216 (290)
T PF04733_consen  139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGH  216 (290)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCC
Confidence            34555666666666666666665555444444443332 222  35666666666555545566666666666666 666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          141 ASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +++|++.+++|+..+|+++.+++|+
T Consensus       217 ~~eAe~~L~~al~~~~~~~d~LaNl  241 (290)
T PF04733_consen  217 YEEAEELLEEALEKDPNDPDTLANL  241 (290)
T ss_dssp             HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHH
Confidence            6666666666666666666655553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1e-06  Score=76.21  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=81.0

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      .|.+.+++.+|+.+..++|+++|+|..+++..+.++. ..++|+.|+..|++|++++|+|-.+...+..+..+.+...++
T Consensus       266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK  344 (397)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            4667789999999999999999999999999999996 899999999999999999999999999998887773344456


Q ss_pred             HHHHHHHHHHhCC
Q 046296          144 AESYFDQAVKSAP  156 (167)
Q Consensus       144 A~~~~e~Al~l~P  156 (167)
                      ..+.|.+.+..-+
T Consensus       345 ekk~y~~mF~k~~  357 (397)
T KOG0543|consen  345 EKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHhhccc
Confidence            6889999888655

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.49  E-value=4.6e-07  Score=82.05  Aligned_cols=93  Identities=15%  Similarity=0.061  Sum_probs=77.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      ++|.+.+...+.+|+..|.+++.+...+..|. ..++.++|..+++.+++.+|.+...|+-+|.++.. ..+|++|+++|
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eaiKcy   98 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAIKCY   98 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHHHHH
Confidence            46777788888888888888888888888876 78888888888888888888888888888888887 88888888888


Q ss_pred             HHHHHhCCCCHHHHH
Q 046296          149 DQAVKSAPDDWLNLI  163 (167)
Q Consensus       149 e~Al~l~P~~~~~l~  163 (167)
                      +.|++++|+|..++.
T Consensus        99 ~nAl~~~~dN~qilr  113 (700)
T KOG1156|consen   99 RNALKIEKDNLQILR  113 (700)
T ss_pred             HHHHhcCCCcHHHHH
Confidence            888888888877664

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=9.2e-07  Score=79.15  Aligned_cols=98  Identities=20%  Similarity=0.109  Sum_probs=79.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      -+|..-+++.+|.++|-|+..+||....+|..+|..+. ..+.-++|+.+|.+|-++-|........+|.=+.. .++++
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~n~k  397 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TNNLK  397 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hccHH
Confidence            35677799999999999999999999999999998876 67777777777777777777776666677776666 77777


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l  162 (167)
                      .|.++|.+|+.+.|++|.++
T Consensus       398 LAe~Ff~~A~ai~P~Dplv~  417 (611)
T KOG1173|consen  398 LAEKFFKQALAIAPSDPLVL  417 (611)
T ss_pred             HHHHHHHHHHhcCCCcchhh
Confidence            77777777777777777655

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.49  E-value=7.1e-07  Score=78.50  Aligned_cols=58  Identities=19%  Similarity=-0.007  Sum_probs=53.6

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILAN  120 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~l~  120 (167)
                      +.+|++.+++++|+.+|++||+++|+++.+   |+|+|.+|. .++++++|++++++||++.
T Consensus        82 G~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALels  142 (453)
T PLN03098         82 GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Confidence            457889999999999999999999999965   999999987 8999999999999999984

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.49  E-value=4.7e-07  Score=81.07  Aligned_cols=90  Identities=24%  Similarity=0.275  Sum_probs=76.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PGDGNI  126 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l--------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--------P~~~~a  126 (167)
                      .+|..++++.+|+.+|++||.+        +|.-+.++.+||.++. ..+++++|..+|++|++|-        |.-+..
T Consensus       249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~  327 (508)
T KOG1840|consen  249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ  327 (508)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence            5788899999999999999987        4445678899998887 8999999999999999873        334556


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      +.+++.++.. ++++++|+.++++++++
T Consensus       328 l~~~~~~~~~-~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  328 LSELAAILQS-MNEYEEAKKLLQKALKI  354 (508)
T ss_pred             HHHHHHHHHH-hcchhHHHHHHHHHHHH
Confidence            6677888887 99999999999999987

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.47  E-value=1.7e-07  Score=53.97  Aligned_cols=34  Identities=35%  Similarity=0.448  Sum_probs=31.2

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296           77 YNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE  111 (167)
Q Consensus        77 ~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~  111 (167)
                      +|++||+++|+|+.+|++||.++. ..|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhcC
Confidence            489999999999999999999997 8999999863

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.47  E-value=6.5e-07  Score=83.99  Aligned_cols=93  Identities=22%  Similarity=0.264  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-GNILSLYADLIWQAHKDASRAESYFD  149 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-~~al~~lA~~l~~~~g~~~eA~~~~e  149 (167)
                      ++.|.+.|..+++..|+|..++...|.+++ .+++|-.|+.+|++|+.++|.. +....-.+.++++ +++.+.|+..|+
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~y-nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k-l~~~~~a~~a~~  223 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAY-NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWK-LGMSEKALLAFE  223 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHh-ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh-ccchhhHHHHHH
Confidence            688999999999999999999999998887 7899999999999999998854 4555667778888 888899999999


Q ss_pred             HHHHhCCCCHHHHHhc
Q 046296          150 QAVKSAPDDWLNLIKL  165 (167)
Q Consensus       150 ~Al~l~P~~~~~l~~y  165 (167)
                      +|++++|.+..++..+
T Consensus       224 ralqLdp~~v~alv~L  239 (1018)
T KOG2002|consen  224 RALQLDPTCVSALVAL  239 (1018)
T ss_pred             HHHhcChhhHHHHHHH
Confidence            9999999777665443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.47  E-value=3.8e-07  Score=77.70  Aligned_cols=88  Identities=8%  Similarity=-0.016  Sum_probs=40.1

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      |...+++++|.++|+++++++|.|.+++...|.-++ ..++.+-|+.+|+|.+..--.+++.+.+++.+++- .++++-+
T Consensus       300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-aqQ~D~~  377 (478)
T KOG1129|consen  300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-AQQIDLV  377 (478)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-hcchhhh
Confidence            333444444444444444444444444443333333 34444444444444444444444444444444444 4444444


Q ss_pred             HHHHHHHHHh
Q 046296          145 ESYFDQAVKS  154 (167)
Q Consensus       145 ~~~~e~Al~l  154 (167)
                      +..|++|+..
T Consensus       378 L~sf~RAlst  387 (478)
T KOG1129|consen  378 LPSFQRALST  387 (478)
T ss_pred             HHHHHHHHhh
Confidence            4444444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.46  E-value=4.8e-06  Score=62.15  Aligned_cols=82  Identities=18%  Similarity=0.210  Sum_probs=72.0

Q ss_pred             cCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCC
Q 046296           67 NNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKD  140 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~  140 (167)
                      ..++..++...+++.++..|+.   ..+.+.+|.++. ..+++++|+..|++++...|+.   +.+...+|.+++. +++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~  100 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQ  100 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCC
Confidence            3578899999999999999999   566777888887 7999999999999999988765   4577789999999 999


Q ss_pred             HHHHHHHHHH
Q 046296          141 ASRAESYFDQ  150 (167)
Q Consensus       141 ~~eA~~~~e~  150 (167)
                      +++|+..++.
T Consensus       101 ~d~Al~~L~~  110 (145)
T PF09976_consen  101 YDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHh
Confidence            9999999966

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.46  E-value=6.6e-07  Score=74.93  Aligned_cols=92  Identities=22%  Similarity=0.185  Sum_probs=79.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-HHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA-SRAESY  147 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~-~eA~~~  147 (167)
                      ..+.+|..+|++..+..|.++..++.+|.+.. .++++++|++.+++|+..+|+++.++.++..+... +|+. +.+.++
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~~  258 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAERY  258 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHHH
Confidence            46889999999988888899999999998875 89999999999999999999999999999988888 8887 778899


Q ss_pred             HHHHHHhCCCCHHHH
Q 046296          148 FDQAVKSAPDDWLNL  162 (167)
Q Consensus       148 ~e~Al~l~P~~~~~l  162 (167)
                      +.++...+|+.|.+.
T Consensus       259 l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  259 LSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHHCHHHTTTSHHHH
T ss_pred             HHHHHHhCCCChHHH
Confidence            999999999998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.43  E-value=6.1e-07  Score=54.16  Aligned_cols=42  Identities=26%  Similarity=0.238  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 046296           90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYAD  132 (167)
Q Consensus        90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~  132 (167)
                      .++..+|.++. ..|++++|+++|+++|+.+|+|+.++..++.
T Consensus         2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45666666664 5677777777777777777777776666653

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.43  E-value=2.3e-07  Score=81.54  Aligned_cols=98  Identities=18%  Similarity=0.061  Sum_probs=90.1

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      ++..++++.|+..|-+||+++|+++.++.+.+..+. +.+++-.|+.-+.+||+++|....+++..|.+... .+++.+|
T Consensus        14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A   91 (476)
T KOG0376|consen   14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKA   91 (476)
T ss_pred             hcccchHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHH
Confidence            455688999999999999999999999999886654 78999999999999999999999999999999998 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHh
Q 046296          145 ESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ...|+....+.|+++.+.-.
T Consensus        92 ~~~l~~~~~l~Pnd~~~~r~  111 (476)
T KOG0376|consen   92 LLDLEKVKKLAPNDPDATRK  111 (476)
T ss_pred             HHHHHHhhhcCcCcHHHHHH
Confidence            99999999999999987643

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.43  E-value=4e-06  Score=63.23  Aligned_cols=88  Identities=15%  Similarity=0.090  Sum_probs=77.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG----NILSLYADLIWQAHKDASR  143 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~----~al~~lA~~l~~~~g~~~e  143 (167)
                      .++++.|++.|.++|.+.|.++.+++|.|..+. .+++.++|+.-+.+|+++.-...    .++...+.+|.. +|+-+.
T Consensus        56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~g~dd~  133 (175)
T KOG4555|consen   56 AGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-LGNDDA  133 (175)
T ss_pred             ccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-hCchHH
Confidence            368999999999999999999999999999997 79999999999999999975433    455667888887 999999


Q ss_pred             HHHHHHHHHHhCCC
Q 046296          144 AESYFDQAVKSAPD  157 (167)
Q Consensus       144 A~~~~e~Al~l~P~  157 (167)
                      |..-|+.|-++...
T Consensus       134 AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  134 ARADFEAAAQLGSK  147 (175)
T ss_pred             HHHhHHHHHHhCCH
Confidence            99999999888654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=3.2e-07  Score=78.17  Aligned_cols=98  Identities=12%  Similarity=0.047  Sum_probs=55.9

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---GDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P---~~~~al~~lA~~l~~~~g~~~  142 (167)
                      +-.++.+-|+.+|++.|++--.+|+.+.|++.+.. ..++++-++..|+||+....   .-+++|++++.+... .||+.
T Consensus       335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~n  412 (478)
T KOG1129|consen  335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFN  412 (478)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchH
Confidence            33445556666666666666666666666655543 45556666666666655432   224556666665555 56666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      -|.+.|+-||..+|++..++.|+
T Consensus       413 lA~rcfrlaL~~d~~h~ealnNL  435 (478)
T KOG1129|consen  413 LAKRCFRLALTSDAQHGEALNNL  435 (478)
T ss_pred             HHHHHHHHHhccCcchHHHHHhH
Confidence            66666666666666666555554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.42  E-value=2e-06  Score=79.21  Aligned_cols=100  Identities=16%  Similarity=0.142  Sum_probs=91.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      ++...++.++|..++.+|-.++|-.+..|+..+..+. .++..++|.+.|.-|+.+||+++.++..+|.++.+ .|+..-
T Consensus       659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~l  736 (799)
T KOG4162|consen  659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRL  736 (799)
T ss_pred             HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcch
Confidence            4455578889999999999999999999999998875 89999999999999999999999999999999999 998777


Q ss_pred             HHH--HHHHHHHhCCCCHHHHHhc
Q 046296          144 AES--YFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       144 A~~--~~e~Al~l~P~~~~~l~~y  165 (167)
                      |..  .+..|++++|.++.+|.++
T Consensus       737 a~~~~~L~dalr~dp~n~eaW~~L  760 (799)
T KOG4162|consen  737 AEKRSLLSDALRLDPLNHEAWYYL  760 (799)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHH
Confidence            777  9999999999999998764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.41  E-value=3.3e-06  Score=69.91  Aligned_cols=74  Identities=19%  Similarity=0.078  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296           88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus        88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +...++..|..+....+++++|+..|++.|+..|++   +.+++.+|.+++. .+++++|+.+|+++++..|+++.+-
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~  217 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAA  217 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchh
Confidence            456667777665435789999999999999999998   5899999999999 9999999999999999999876433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=2.1e-06  Score=75.86  Aligned_cols=96  Identities=25%  Similarity=0.078  Sum_probs=83.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|..++++++|+.+|.+...+=-+++++++.+|.++. .+.+..+|++++.++..+-|++|.++..|+.+|-+ .|+-.
T Consensus       532 lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dlydq-egdks  609 (840)
T KOG2003|consen  532 LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-EGDKS  609 (840)
T ss_pred             ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccchh
Confidence            45677899999999999998888899999999999885 89999999999999999999999999999999887 78777


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q 046296          143 RAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~  160 (167)
                      +|.+++-...+.-|.|..
T Consensus       610 qafq~~ydsyryfp~nie  627 (840)
T KOG2003|consen  610 QAFQCHYDSYRYFPCNIE  627 (840)
T ss_pred             hhhhhhhhcccccCcchH
Confidence            777777777777776653

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.38  E-value=2.1e-06  Score=81.31  Aligned_cols=79  Identities=18%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296           73 STDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAV  152 (167)
Q Consensus        73 ~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al  152 (167)
                      .++.+|-+.+-..|.+..+++.+|.++. .+++.++|.+.|+++|+++|+|+.++.+||..|.. . +.++|++++.+|+
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV  176 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAI  176 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHH
Confidence            5556666666667777788999998875 78999999999999999999999999999988888 6 8899999998888


Q ss_pred             Hh
Q 046296          153 KS  154 (167)
Q Consensus       153 ~l  154 (167)
                      +.
T Consensus       177 ~~  178 (906)
T PRK14720        177 YR  178 (906)
T ss_pred             HH
Confidence            76

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.35  E-value=3.5e-06  Score=68.81  Aligned_cols=77  Identities=12%  Similarity=-0.066  Sum_probs=66.1

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296           87 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNIL---SLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus        87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al---~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ..+..++..|..+. ..+++++|++.|++++...|..+.+.   ..+|.+++. .+++++|+.+|++.+++.|+++.+-.
T Consensus        30 ~~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         30 NPPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            35666777777775 68999999999999999999987665   789999999 99999999999999999999986543


Q ss_pred             hc
Q 046296          164 KL  165 (167)
Q Consensus       164 ~y  165 (167)
                      .+
T Consensus       108 a~  109 (243)
T PRK10866        108 VL  109 (243)
T ss_pred             HH
Confidence            33

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1e-06  Score=76.57  Aligned_cols=101  Identities=15%  Similarity=0.093  Sum_probs=77.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILS------------LYA  131 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~------------~lA  131 (167)
                      .+.-.+++++|...--..+++++.|..+++--+.+++ ...+.++|+.+|+++|+++|++..+-.            .-|
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g  256 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG  256 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence            3444577888888888888888888888887777776 678888888888888888887754433            334


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 046296          132 DLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKLY  166 (167)
Q Consensus       132 ~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~yy  166 (167)
                      .-.++ .|++.+|.+.|..||.++|++....+.+|
T Consensus       257 N~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY  290 (486)
T KOG0550|consen  257 NDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLY  290 (486)
T ss_pred             hhHhh-ccchhHHHHHHHHhhcCCccccchhHHHH
Confidence            55666 88888888888888888888877666665

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.34  E-value=1.5e-06  Score=52.36  Aligned_cols=41  Identities=20%  Similarity=0.102  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      |.++..+|.++.. +|++++|+++|+++|+.+|+|+.++..+
T Consensus         1 p~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    1 PAAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            4678899999999 9999999999999999999999988765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.32  E-value=7.5e-06  Score=60.24  Aligned_cols=67  Identities=21%  Similarity=0.138  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      |.+++++|.++. ..|+.++|+.+|++|+...+..   ..++..++..+.. .|++++|+.++++++...|+
T Consensus         1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCC
Confidence            457888999886 8999999999999999986554   5788899999999 99999999999999999898

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=3.2e-06  Score=73.84  Aligned_cols=98  Identities=20%  Similarity=0.193  Sum_probs=85.0

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------------------------------HcCCHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKE---------------------------------VRGDFAK  108 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~---------------------------------~~gd~e~  108 (167)
                      +..|+..|++++|+..|+++.-+||.+...+-.||.+|..                                 ..+++..
T Consensus       239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r  318 (564)
T KOG1174|consen  239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER  318 (564)
T ss_pred             hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence            3567888999999999999999999998887777765531                                 2357888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296          109 AEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       109 A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      |+.+-+|+|+.+|++..++...|.++.. .++.++|+-.|+.|+.+.|..-.
T Consensus       319 AL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~  369 (564)
T KOG1174|consen  319 ALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLE  369 (564)
T ss_pred             HHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHH
Confidence            9999999999999999999999999999 99999999999999999997654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.29  E-value=5e-06  Score=75.51  Aligned_cols=95  Identities=11%  Similarity=-0.005  Sum_probs=76.0

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      ...|+.++|..+.+.+++.+|.+...|.-++.+.. ...+|++|+++|+.|+.++|+|..+|..++.+..+ +++++-..
T Consensus        52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~  129 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYL  129 (700)
T ss_pred             hcccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHH
Confidence            34577888888888888888888888888887665 67888888888888888888888888888888887 88888887


Q ss_pred             HHHHHHHHhCCCCHHHH
Q 046296          146 SYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       146 ~~~e~Al~l~P~~~~~l  162 (167)
                      ..-.+.+++.|.+-..|
T Consensus       130 ~tr~~LLql~~~~ra~w  146 (700)
T KOG1156|consen  130 ETRNQLLQLRPSQRASW  146 (700)
T ss_pred             HHHHHHHHhhhhhHHHH
Confidence            77888888888765444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.29  E-value=2.4e-06  Score=47.92  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      +.+++.+|.+++. ++++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence            3566677777777 777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.28  E-value=4e-06  Score=79.18  Aligned_cols=94  Identities=18%  Similarity=0.085  Sum_probs=83.1

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ--AHKDASR  143 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~--~~g~~~e  143 (167)
                      .++.+|++|++..+++|+.+|+|..++..++..+....++.++|.++|..|.+++|++.-+|--|+.+|..  ..-++++
T Consensus        13 l~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~   92 (1238)
T KOG1127|consen   13 LRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDR   92 (1238)
T ss_pred             HhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhH
Confidence            34578999999999999999999999999999998544559999999999999999999999999998876  3467889


Q ss_pred             HHHHHHHHHHhCCCCH
Q 046296          144 AESYFDQAVKSAPDDW  159 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~  159 (167)
                      +-.+|++++-+.|++.
T Consensus        93 ~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   93 AAKCYQRAVLILENQS  108 (1238)
T ss_pred             hHHHHHHHHHhhhhhh
Confidence            9999999998888654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=98.28  E-value=1.2e-05  Score=71.46  Aligned_cols=94  Identities=12%  Similarity=0.200  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296           72 SSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA  151 (167)
Q Consensus        72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A  151 (167)
                      .+-...|++|+...|.++..|.+|..+.. ..+.+.+-...|.+++..+|++|..|..-|...++..-+.+.|..+|.++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            35677899999999999999999998775 67779999999999999999999999999999998444599999999999


Q ss_pred             HHhCCCCHHHHHhcc
Q 046296          152 VKSAPDDWLNLIKLY  166 (167)
Q Consensus       152 l~l~P~~~~~l~~yy  166 (167)
                      |+.+|++|.++.-|+
T Consensus       167 LR~npdsp~Lw~eyf  181 (568)
T KOG2396|consen  167 LRFNPDSPKLWKEYF  181 (568)
T ss_pred             hhcCCCChHHHHHHH
Confidence            999999998886653

>PRK15331 chaperone protein SicA; Provisional

Probab=98.27  E-value=4.1e-06  Score=64.81  Aligned_cols=76  Identities=13%  Similarity=-0.025  Sum_probs=68.2

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           84 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus        84 l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      +.++..+..+.+|.-++ ..|++++|+.+|+-+...+|.++..+..||.++.. +++|++|+..|-.|..+++++|..
T Consensus        32 is~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             CCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCc
Confidence            44555667788888777 79999999999999999999999999999999999 999999999999999999998754

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.27  E-value=8.8e-06  Score=69.12  Aligned_cols=96  Identities=16%  Similarity=0.166  Sum_probs=84.9

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-GNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-~~al~~lA~~l~~~~g~~~e  143 (167)
                      +....++++|...+++|++.+|+...+-..++.+.. ..|++++|++.++++++.||.. ++++..|..+|.. .|+.++
T Consensus       190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~  267 (389)
T COG2956         190 ALASSDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAE  267 (389)
T ss_pred             HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHH
Confidence            445578999999999999999999999999999886 8999999999999999999975 5778888889998 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q 046296          144 AESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l  162 (167)
                      .+..+.++++..|.....+
T Consensus       268 ~~~fL~~~~~~~~g~~~~l  286 (389)
T COG2956         268 GLNFLRRAMETNTGADAEL  286 (389)
T ss_pred             HHHHHHHHHHccCCccHHH
Confidence            9999999999988765433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.25  E-value=2.3e-06  Score=48.35  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      +.+|+++|.+++. ++++++|+.+|++||+++|+
T Consensus         1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence            3456667777776 77777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.24  E-value=1.2e-06  Score=59.37  Aligned_cols=58  Identities=16%  Similarity=0.205  Sum_probs=49.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          103 RGDFAKAEELCGRAILANPG--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       103 ~gd~e~A~~~~~rAl~l~P~--~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      .++++.|+.+|+++++.+|.  +..+++.+|.+++. ++++++|+.++++ ++.+|.++..+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~   61 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIH   61 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHH
Confidence            57899999999999999995  56677788999999 9999999999999 88888775443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.24  E-value=2.7e-06  Score=70.67  Aligned_cols=90  Identities=18%  Similarity=0.246  Sum_probs=66.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      +..+.|...|++|++..+....+|..+|.+-+...++.+.|...|+++++.-|.+..+|..|...+.. .++.+.|..+|
T Consensus        15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lf   93 (280)
T PF05843_consen   15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALF   93 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHH
Confidence            45778888888888666667788888887644235666668888888888888888888888888887 88888888888


Q ss_pred             HHHHHhCCCCH
Q 046296          149 DQAVKSAPDDW  159 (167)
Q Consensus       149 e~Al~l~P~~~  159 (167)
                      ++++..-|...
T Consensus        94 er~i~~l~~~~  104 (280)
T PF05843_consen   94 ERAISSLPKEK  104 (280)
T ss_dssp             HHHCCTSSCHH
T ss_pred             HHHHHhcCchh
Confidence            88888766554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.21  E-value=1.7e-06  Score=57.54  Aligned_cols=56  Identities=20%  Similarity=0.172  Sum_probs=46.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhC---C-CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEAN---P-GN---ALLLGNYARFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~---P-~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      .+|..++++++|+.+|++++++.   + ++   +.++.++|.++. .++++++|++++++|+++
T Consensus        13 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   13 RVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence            46888999999999999999762   2 22   567889999887 899999999999999986

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.18  E-value=1.5e-05  Score=71.82  Aligned_cols=91  Identities=23%  Similarity=0.152  Sum_probs=77.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      +.|...+++++|+.+.++||+..|..++.+...|.+|. ..|++.+|.++++.|..+|+.|-.+-...+-.+++ .++.+
T Consensus       202 qhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e  279 (517)
T PF12569_consen  202 QHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIE  279 (517)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHH
Confidence            44667788999999999999999999999999999987 89999999999999999999998888888888888 89999


Q ss_pred             HHHHHHHHHHHhC
Q 046296          143 RAESYFDQAVKSA  155 (167)
Q Consensus       143 eA~~~~e~Al~l~  155 (167)
                      +|++.+..-.+.+
T Consensus       280 ~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  280 EAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHHhhcCCC
Confidence            9998876654443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.16  E-value=7e-06  Score=77.60  Aligned_cols=92  Identities=12%  Similarity=0.034  Sum_probs=85.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      -+|...+++-+|+..|+.|++.+|++...|..++.++. ..|++..|++.|.||..++|.+..+.+..|.+... .|.|.
T Consensus       570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~-~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-~GkYk  647 (1238)
T KOG1127|consen  570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP-ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-NGKYK  647 (1238)
T ss_pred             ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH-hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-hhhHH
Confidence            46777899999999999999999999999999999997 79999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHhCC
Q 046296          143 RAESYFDQAVKSAP  156 (167)
Q Consensus       143 eA~~~~e~Al~l~P  156 (167)
                      +|+..++..|....
T Consensus       648 eald~l~~ii~~~s  661 (1238)
T KOG1127|consen  648 EALDALGLIIYAFS  661 (1238)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887644

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.16  E-value=1.2e-05  Score=73.43  Aligned_cols=93  Identities=17%  Similarity=0.074  Sum_probs=79.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      +++.++|+++++++|+..|..+.+|..+++++. ++++++.|.+.|..-++.-|+.+..|..++.+--. .++.-+|...
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-~~~~~rAR~i  741 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-DGQLVRARSI  741 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-hcchhhHHHH
Confidence            467889999999999999999999999999885 78888888888888888888888888888887776 7788888888


Q ss_pred             HHHHHHhCCCCHHHH
Q 046296          148 FDQAVKSAPDDWLNL  162 (167)
Q Consensus       148 ~e~Al~l~P~~~~~l  162 (167)
                      ++++...+|.++..+
T Consensus       742 ldrarlkNPk~~~lw  756 (913)
T KOG0495|consen  742 LDRARLKNPKNALLW  756 (913)
T ss_pred             HHHHHhcCCCcchhH
Confidence            888888888887554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.15  E-value=4.1e-06  Score=76.84  Aligned_cols=98  Identities=16%  Similarity=0.098  Sum_probs=77.9

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------HHHHcCCHHHHHHHHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARF----------------------------LKEVRGDFAKAEELCGRA  116 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~----------------------------l~~~~gd~e~A~~~~~rA  116 (167)
                      |...++..+|..+.++-++ .|+++..|..++.+                            .+ ...+|.++..++++.
T Consensus       434 Y~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~-~~~~fs~~~~hle~s  511 (777)
T KOG1128|consen  434 YLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLIL-SNKDFSEADKHLERS  511 (777)
T ss_pred             HHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccc-cchhHHHHHHHHHHH
Confidence            4444566666666666666 44445444444333                            22 357899999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          117 ILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       117 l~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++++|-....|+.++.+.++ ..+++.|.++|.+++.++|++...+.|+
T Consensus       512 l~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNl  559 (777)
T KOG1128|consen  512 LEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNL  559 (777)
T ss_pred             hhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhh
Confidence            99999999999999999999 9999999999999999999999998876

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=2.8e-05  Score=64.10  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=82.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEA--------NPGNA----------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN  125 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l--------~P~n~----------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~  125 (167)
                      -.++.+++.+|...|+.||..        .|..|          ..+.||+.++. ..++|-++++++...|..+|.|..
T Consensus       187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvK  265 (329)
T KOG0545|consen  187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVK  265 (329)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHH
Confidence            445778999999999998743        45554          35678888886 799999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296          126 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      +++..|.+... .=+.++|..-|.++|+++|.-..+
T Consensus       266 A~frRakAhaa-~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  266 AYFRRAKAHAA-VWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHHHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHH
Confidence            99999999988 888999999999999999976543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.09  E-value=1.1e-05  Score=45.12  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD  123 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~  123 (167)
                      |.+|+.+|.++. ..+++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence            568899999987 8999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.08  E-value=0.00014  Score=52.59  Aligned_cols=92  Identities=24%  Similarity=0.259  Sum_probs=68.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANP---GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG-DGNILSLYADLIWQAHK  139 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P---~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~-~~~al~~lA~~l~~~~g  139 (167)
                      +|...+++++|..+|++++..+|   .....+..+...+. ..+++++|+..+.+++...|. ....+..++..+.. .+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  216 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG  216 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence            46667788888888888877776   23444444444443 567888888888888888888 67777888888877 77


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 046296          140 DASRAESYFDQAVKSAPD  157 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P~  157 (167)
                      ++++|+.++.+++...|.
T Consensus       217 ~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         217 KYEEALEYYEKALELDPD  234 (291)
T ss_pred             cHHHHHHHHHHHHhhCcc
Confidence            888888888888888876

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.08  E-value=2.6e-05  Score=59.00  Aligned_cols=77  Identities=14%  Similarity=0.032  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296           88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPG---DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus        88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~---~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      .+..++.-|.-.. ..++|.+|++.|+.....-|.   ...+...++.++++ .+++++|+..+++-|+++|.++.+-..
T Consensus         9 ~~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    9 SPQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            4566777777765 799999999999999999885   45788899999999 999999999999999999999866555


Q ss_pred             cc
Q 046296          165 LY  166 (167)
Q Consensus       165 yy  166 (167)
                      +|
T Consensus        87 ~Y   88 (142)
T PF13512_consen   87 YY   88 (142)
T ss_pred             HH
Confidence            44

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.07  E-value=8.9e-06  Score=45.87  Aligned_cols=34  Identities=26%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD  123 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~  123 (167)
                      +.+|+++|.++. .++++++|+.+|++||+++|++
T Consensus         1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence            468899999887 8999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.06  E-value=3.3e-05  Score=61.03  Aligned_cols=75  Identities=19%  Similarity=0.130  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296           88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus        88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      .+..++..|..+. ..+++.+|+..|++++...|.+   +.++..++.+++. .+++++|+..|++.++..|+++.+-..
T Consensus         4 ~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    4 TAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             -HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            4677888888776 7999999999999999998865   5788899999999 999999999999999999998855433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=1.7e-05  Score=67.51  Aligned_cols=95  Identities=13%  Similarity=0.102  Sum_probs=81.3

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQA  137 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~  137 (167)
                      |+-|++..+|..|+.+|.+.|+..-.|    +..++|.|.+.. ..++|-.|+.-+.+|+.++|.+.-+++.-|.++++ 
T Consensus        88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-  165 (390)
T KOG0551|consen   88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE-  165 (390)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-
Confidence            467888889999999999999985544    556777776665 68999999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 046296          138 HKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       138 ~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      ..++++|..+++..++++-..
T Consensus       166 Le~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  166 LERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHHHHHHHHhhhhhhhHHH
Confidence            999999988888887765443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.00  E-value=3.9e-05  Score=70.29  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=92.3

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +|+|.++++.+.|...|..-++.-|+.+..|..++.+- +..+.+-+|...++++...||+++..|...-.+-+. .|+.
T Consensus       692 GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR-~gn~  769 (913)
T KOG0495|consen  692 GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSILDRARLKNPKNALLWLESIRMELR-AGNK  769 (913)
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH-cCCH
Confidence            47888999999999999999999999999999999865 578899999999999999999999999988888888 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Q 046296          142 SRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ++|...+-+||+--|++...++
T Consensus       770 ~~a~~lmakALQecp~sg~LWa  791 (913)
T KOG0495|consen  770 EQAELLMAKALQECPSSGLLWA  791 (913)
T ss_pred             HHHHHHHHHHHHhCCccchhHH
Confidence            9999999999999999876653

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.00  E-value=4.4e-05  Score=74.34  Aligned_cols=101  Identities=20%  Similarity=0.214  Sum_probs=92.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG--DGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~--~~~al~~lA~~l~~~~g~  140 (167)
                      .+|.+-..+++|.++|+++++..-+-..+|..|+.+|. .+.+-++|...+.|||+.-|.  +..+..-.|.+-|+ .|+
T Consensus      1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GD 1615 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGD 1615 (1710)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCC
Confidence            36778889999999999999999999999999999996 677789999999999999998  88999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          141 ASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      .+++..+|+-.|...|....+|.-|
T Consensus      1616 aeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred             chhhHHHHHHHHhhCccchhHHHHH
Confidence            9999999999999999988887655

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.99  E-value=1.1e-05  Score=68.43  Aligned_cols=65  Identities=17%  Similarity=0.266  Sum_probs=50.5

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYAD  132 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~  132 (167)
                      ++|+.++|..+|+.|++++|++|+++..++.|.. ...++-+|-.+|-+|+.++|.+.+++.+.+.
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            4577888888888888888888888888887774 5677788888888888888888877776554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.99  E-value=8.2e-05  Score=61.80  Aligned_cols=92  Identities=20%  Similarity=0.200  Sum_probs=76.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~~~g~~~eA  144 (167)
                      .++.+.|...|+++++..|.++.+|..|..+|. ..++.+.|..+|++++..-|...   .+|..+..+-.. .|+.+..
T Consensus        49 ~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~-~Gdl~~v  126 (280)
T PF05843_consen   49 NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK-YGDLESV  126 (280)
T ss_dssp             CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH-HS-HHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-cCCHHHH
Confidence            456777999999999999999999999999997 79999999999999999877665   677777777777 8999999


Q ss_pred             HHHHHHHHHhCCCCHHH
Q 046296          145 ESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~  161 (167)
                      .++.+++.++-|++..+
T Consensus       127 ~~v~~R~~~~~~~~~~~  143 (280)
T PF05843_consen  127 RKVEKRAEELFPEDNSL  143 (280)
T ss_dssp             HHHHHHHHHHTTTS-HH
T ss_pred             HHHHHHHHHHhhhhhHH
Confidence            99999999999986643

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.99  E-value=0.00011  Score=63.36  Aligned_cols=91  Identities=18%  Similarity=0.133  Sum_probs=86.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      .++...|+.+..+.|++.|=++..+-..|.++. ..++..+|+.-++.|-++..++.+.++.++.+++. .++.+.++..
T Consensus       168 ~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i-~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vgd~~~sL~~  245 (504)
T KOG0624|consen  168 SGDCQNAIEMITHLLEIQPWDASLRQARAKCYI-AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VGDAENSLKE  245 (504)
T ss_pred             CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH-hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hhhHHHHHHH
Confidence            468999999999999999999999999999886 89999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHhCCCCHH
Q 046296          148 FDQAVKSAPDDWL  160 (167)
Q Consensus       148 ~e~Al~l~P~~~~  160 (167)
                      ++..|+++|+...
T Consensus       246 iRECLKldpdHK~  258 (504)
T KOG0624|consen  246 IRECLKLDPDHKL  258 (504)
T ss_pred             HHHHHccCcchhh
Confidence            9999999998754

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.99  E-value=2.5e-05  Score=66.34  Aligned_cols=62  Identities=21%  Similarity=0.294  Sum_probs=58.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ..|+.++|..+|+.|+.++|.+++++..++.+.-. ..+.-+|-++|-+||.++|.|..++.|
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            68999999999999999999999999999999988 899999999999999999999988865

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.94  E-value=0.00028  Score=52.22  Aligned_cols=85  Identities=18%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNA----------------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG  124 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~----------------------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~  124 (167)
                      ..++.+.++..+++++.+...+.                      .++..++..+. ..+++++|+.++++++.++|.+.
T Consensus        18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E   96 (146)
T PF03704_consen   18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALL-EAGDYEEALRLLQRALALDPYDE   96 (146)
T ss_dssp             HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCH
Confidence            34678888999999998853321                      11223444443 68999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          125 NILSLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      .++..+-.++.. +|++.+|+++|++..+
T Consensus        97 ~~~~~lm~~~~~-~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   97 EAYRLLMRALAA-QGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence            999999999999 9999999999998855

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.93  E-value=2.9e-06  Score=72.27  Aligned_cols=89  Identities=20%  Similarity=0.072  Sum_probs=81.1

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES  146 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~  146 (167)
                      ..+.++.|+..|.++|+++|..+.++...+.++. ..++..+|+.-|..|++++|+.+.-+-..+.+... ++++++|..
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~aa~  203 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEEAAH  203 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHHHHH
Confidence            4577999999999999999999999999999886 78999999999999999999999888888888887 999999999


Q ss_pred             HHHHHHHhCCC
Q 046296          147 YFDQAVKSAPD  157 (167)
Q Consensus       147 ~~e~Al~l~P~  157 (167)
                      ++..|++++-+
T Consensus       204 dl~~a~kld~d  214 (377)
T KOG1308|consen  204 DLALACKLDYD  214 (377)
T ss_pred             HHHHHHhcccc
Confidence            99999998654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.89  E-value=0.0004  Score=50.18  Aligned_cols=91  Identities=21%  Similarity=0.204  Sum_probs=82.3

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +...++++.|+..+.++++..|. ....+..++..+. ..+++++|+..+.+++...|.....+..++..+.. .+.+++
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  254 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLLE-LGRYEE  254 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH-cCCHHH
Confidence            34557899999999999999999 7999999998886 78899999999999999999988888888888885 899999


Q ss_pred             HHHHHHHHHHhCCC
Q 046296          144 AESYFDQAVKSAPD  157 (167)
Q Consensus       144 A~~~~e~Al~l~P~  157 (167)
                      |...++++++..|.
T Consensus       255 ~~~~~~~~~~~~~~  268 (291)
T COG0457         255 ALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHhCcc
Confidence            99999999999996

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.87  E-value=0.0001  Score=66.49  Aligned_cols=69  Identities=23%  Similarity=0.173  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           91 LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus        91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      +++.+|..+. ..+++++|++++++||++.|..++.++..|.++-. .|++.+|..+++.|.++++.|-++
T Consensus       196 ~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyi  264 (517)
T PF12569_consen  196 TLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYI  264 (517)
T ss_pred             HHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHH
Confidence            4466787765 79999999999999999999999999999999999 999999999999999999987654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.86  E-value=0.00013  Score=58.13  Aligned_cols=92  Identities=17%  Similarity=0.109  Sum_probs=75.6

Q ss_pred             hhcCCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCH
Q 046296           65 SNNNHGSSSTDAYNEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--GDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~-l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P--~~~~al~~lA~~l~~~~g~~  141 (167)
                      ....|++.+|..+|++++. +...++..+..+++..+ ..+++..|...+++..+.+|  ..|..+..++.+|.. +|++
T Consensus        99 l~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~  176 (251)
T COG4700          99 LAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKY  176 (251)
T ss_pred             HHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCc
Confidence            3445788888999988886 56778888888888887 68889999999999998888  456777788888888 8999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q 046296          142 SRAESYFDQAVKSAPDD  158 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~  158 (167)
                      +.|+..|+.++.-.|.-
T Consensus       177 a~Aesafe~a~~~ypg~  193 (251)
T COG4700         177 ADAESAFEVAISYYPGP  193 (251)
T ss_pred             hhHHHHHHHHHHhCCCH
Confidence            99999999999888764

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.85  E-value=8.9e-05  Score=58.24  Aligned_cols=63  Identities=16%  Similarity=0.065  Sum_probs=48.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR-----------GDFAKAEELCGRAILANPGDGNILSLYAD  132 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~-----------gd~e~A~~~~~rAl~l~P~~~~al~~lA~  132 (167)
                      .-+++|+.-|++||.++|+...+++++++++. ..           .-|++|..+|++|+..+|++......|-.
T Consensus        49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~t-s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   49 KMIEDAISKFEEALKINPNKHDALWCLGNAYT-SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            34788999999999999999999999999875 22           23789999999999999999877655533

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.84  E-value=0.00017  Score=59.38  Aligned_cols=98  Identities=16%  Similarity=0.071  Sum_probs=77.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~  136 (167)
                      +.-.+.+++++|+..|+++....|..+   .++..++..++ ..++++.|+..+++-+++.|.++   .+++..+..++.
T Consensus        42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~  120 (254)
T COG4105          42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF  120 (254)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence            344567899999999999999999875   56777887777 79999999999999999998775   455666666655


Q ss_pred             Hc----CC---HHHHHHHHHHHHHhCCCCHHH
Q 046296          137 AH----KD---ASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       137 ~~----g~---~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      ..    .|   ..+|+.-|+..|+.-|++.++
T Consensus       121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya  152 (254)
T COG4105         121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYA  152 (254)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence            11    12   237889999999999998754

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.84  E-value=3.8e-05  Score=43.08  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          125 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      .+++.+|.++.. ++++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence            456677777777 77777777777777777774

...

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.78  E-value=2.9e-05  Score=65.89  Aligned_cols=88  Identities=6%  Similarity=0.131  Sum_probs=77.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhC
Q 046296           77 YNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYAD-LIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus        77 ~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~-~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      .|.++...-|+++.+|..++.... ..+.+.+-...|.+++..+|.|++.|...+. -++. ..+++.+...|.++|+.+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~-~ani~s~Ra~f~~glR~N  172 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE-IANIESSRAMFLKGLRMN  172 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhh-hccHHHHHHHHHhhhccC
Confidence            467777788999999999998765 7889999999999999999999999988444 4455 899999999999999999


Q ss_pred             CCCHHHHHhcc
Q 046296          156 PDDWLNLIKLY  166 (167)
Q Consensus       156 P~~~~~l~~yy  166 (167)
                      |++|.+|+.|+
T Consensus       173 ~~~p~iw~eyf  183 (435)
T COG5191         173 SRSPRIWIEYF  183 (435)
T ss_pred             CCCchHHHHHH
Confidence            99999997764

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.77  E-value=0.0003  Score=60.95  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=61.7

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      +...+++++|.+..+++++..-+..  +..+.-.+  ..++..+=++..++.++..|++|..+..+|.++++ .+.+.+|
T Consensus       273 li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA  347 (400)
T COG3071         273 LIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKA  347 (400)
T ss_pred             HHHcCChHHHHHHHHHHHHhccChh--HHHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHH
Confidence            3444777777777777777655443  22222223  35677777777777777777777777777777777 7777777


Q ss_pred             HHHHHHHHHhCCCCH
Q 046296          145 ESYFDQAVKSAPDDW  159 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~  159 (167)
                      .++|+.|++..|+..
T Consensus       348 ~~~leaAl~~~~s~~  362 (400)
T COG3071         348 SEALEAALKLRPSAS  362 (400)
T ss_pred             HHHHHHHHhcCCChh
Confidence            777777777777644

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.00021  Score=59.37  Aligned_cols=100  Identities=17%  Similarity=0.046  Sum_probs=61.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLK---EVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK  139 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~---~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g  139 (167)
                      ++..+.++++-|+..++++.+++.+....  .||..+.   .-...+..|.-+|+..-+.-|..+..+.-.|.+.+. ++
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ided~tLt--QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~  221 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDEDATLT--QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LG  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hc
Confidence            34455566666666666666665543322  1222111   012346666667777666666666667777777777 77


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          140 DASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|++|...++.||..+|++|.+++|+
T Consensus       222 ~~eeAe~lL~eaL~kd~~dpetL~Nl  247 (299)
T KOG3081|consen  222 RYEEAESLLEEALDKDAKDPETLANL  247 (299)
T ss_pred             CHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            77777777777777777777777664

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.73  E-value=0.00024  Score=66.75  Aligned_cols=94  Identities=15%  Similarity=0.014  Sum_probs=83.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      ..++.+|.+...+.++..|+-+.+...-|..+. +.++.++|..+++..-..-|+|...+..+-.+|.+ ++++++|..+
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~   99 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHL   99 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHH
Confidence            358999999999999999999999988888886 89999999988888777788899999999999999 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHh
Q 046296          148 FDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       148 ~e~Al~l~P~~~~~l~~  164 (167)
                      |+++++.+|+ ...+.-
T Consensus       100 Ye~~~~~~P~-eell~~  115 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYH  115 (932)
T ss_pred             HHHHHhhCCc-HHHHHH
Confidence            9999999998 544433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.71  E-value=0.00014  Score=66.10  Aligned_cols=99  Identities=20%  Similarity=0.074  Sum_probs=86.3

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n-~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ++..+|+...|++++++|+-..|.. ...+.++|.++. ..+....|-.++.+++.++-..|-.++.++.+++. ..+.+
T Consensus       616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~  693 (886)
T KOG4507|consen  616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNIS  693 (886)
T ss_pred             eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhH
Confidence            3445689999999999999999974 456778999886 67788999999999999998889999999999998 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      .|++.|++|++++|+++.....
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~  715 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENS  715 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHH
Confidence            9999999999999999865433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.67  E-value=0.00025  Score=63.17  Aligned_cols=95  Identities=16%  Similarity=0.202  Sum_probs=85.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ++-.+++++.+|...|++||..+-.|...|..|+.+-. .......|...+.+||.+-|.--..|+.|-.+--. .|+.+
T Consensus        81 qwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~-LgNi~  158 (677)
T KOG1915|consen   81 QWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM-LGNIA  158 (677)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hcccH
Confidence            45667889999999999999999999999999999865 67889999999999999999999999998777666 99999


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 046296          143 RAESYFDQAVKSAPDDW  159 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~  159 (167)
                      -|.++|++-+...|+..
T Consensus       159 gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  159 GARQIFERWMEWEPDEQ  175 (677)
T ss_pred             HHHHHHHHHHcCCCcHH
Confidence            99999999999999753

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.66  E-value=0.00013  Score=60.35  Aligned_cols=85  Identities=25%  Similarity=0.243  Sum_probs=62.4

Q ss_pred             CChHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEAN--PGN----ALLLGNYARFLKEVR-GDFAKAEELCGRAILANP--GD----GNILSLYADLIW  135 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~--P~n----~~~l~~lA~~l~~~~-gd~e~A~~~~~rAl~l~P--~~----~~al~~lA~~l~  135 (167)
                      .++++|+.+|++|+++.  ..+    +.++.++|.++. .. +++++|+++|++|+++-.  +.    ...+..+|.++.
T Consensus        88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~  166 (282)
T PF14938_consen   88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA  166 (282)
T ss_dssp             TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence            38889999999998872  222    456778888775 55 799999999999998732  12    355567888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhC
Q 046296          136 QAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       136 ~~~g~~~eA~~~~e~Al~l~  155 (167)
                      . .++|++|++.|++++...
T Consensus       167 ~-l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  167 R-LGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             H-TT-HHHHHHHHHHHHHTC
T ss_pred             H-hCCHHHHHHHHHHHHHHh
Confidence            8 999999999999998753

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.66  E-value=0.0012  Score=56.02  Aligned_cols=89  Identities=15%  Similarity=0.094  Sum_probs=73.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           76 AYNEKMIEANPGNALLLGNYARFLKEVRG-----------DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        76 ~~~~kAL~l~P~n~~~l~~lA~~l~~~~g-----------d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      ..|++.++.+|.|..+|..|..+-.....           -.+.-+.+|++||+.+|++...+..|-.+..+ .-+.++.
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l   84 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKL   84 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHH
Confidence            56889999999999999998876431111           14667789999999999999998888777777 7788899


Q ss_pred             HHHHHHHHHhCCCCHHHHHhc
Q 046296          145 ESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      .+-+++++..+|+++.++..|
T Consensus        85 ~~~we~~l~~~~~~~~LW~~y  105 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPELWREY  105 (321)
T ss_pred             HHHHHHHHHHCCCChHHHHHH
Confidence            999999999999999888665

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.61  E-value=0.00034  Score=57.93  Aligned_cols=94  Identities=14%  Similarity=0.030  Sum_probs=67.5

Q ss_pred             chhhcC-CChHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH---HHHH
Q 046296           63 NYSNNN-HGSSSTDAYNEKMIEANP--GN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG----DG---NILS  128 (167)
Q Consensus        63 ~~y~~~-g~~d~A~~~~~kAL~l~P--~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----~~---~al~  128 (167)
                      .+|... +++++|+.+|++|+++..  +.    ..++..+|.++. ..++|++|+++|++.+...-+    ..   ..+.
T Consensus       122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            467777 899999999999999732  22    345667888776 799999999999999875322    12   2233


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          129 LYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       129 ~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      ...++++. .+|+..|...|++....+|..
T Consensus       201 ~a~l~~L~-~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  201 KAILCHLA-MGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            44556666 899999999999999999854

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.0011  Score=55.20  Aligned_cols=91  Identities=21%  Similarity=0.157  Sum_probs=79.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS-RAESY  147 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~-eA~~~  147 (167)
                      .++..|.-+|++.-+..|-.+..++..|.+.. .++++++|+..++.||..+|++|+++.|+-.+-.. .|... --.++
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~  264 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERN  264 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHH
Confidence            36889999999999989999999999998775 89999999999999999999999999999887777 76654 45678


Q ss_pred             HHHHHHhCCCCHHH
Q 046296          148 FDQAVKSAPDDWLN  161 (167)
Q Consensus       148 ~e~Al~l~P~~~~~  161 (167)
                      +.+.....|..+.+
T Consensus       265 l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  265 LSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHhcCCcchHH
Confidence            88888889988765

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.58  E-value=0.00091  Score=58.02  Aligned_cols=83  Identities=22%  Similarity=0.188  Sum_probs=73.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      ++...=++..++.++..|++|..+..++..+. ..+.+.+|..+|+.|++.-|... .+..+|.++-+ +|+..+|.+.+
T Consensus       308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~-~g~~~~A~~~r  384 (400)
T COG3071         308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPSAS-DYAELADALDQ-LGEPEEAEQVR  384 (400)
T ss_pred             CCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHH-cCChHHHHHHH
Confidence            56777788899999999999999999999876 89999999999999999887654 45688999999 99999999999


Q ss_pred             HHHHHh
Q 046296          149 DQAVKS  154 (167)
Q Consensus       149 e~Al~l  154 (167)
                      ++++..
T Consensus       385 ~e~L~~  390 (400)
T COG3071         385 REALLL  390 (400)
T ss_pred             HHHHHH
Confidence            999854

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.0019  Score=54.26  Aligned_cols=89  Identities=17%  Similarity=0.133  Sum_probs=74.4

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-------------------------------
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCG-------------------------------  114 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~-------------------------------  114 (167)
                      ...+++..|...|..++...|++..+...|+.++. ..++.+.|...+.                               
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~  223 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ  223 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence            45688999999999999999999999999999886 6777765554332                               


Q ss_pred             ---HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          115 ---RAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       115 ---rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                         +.+..+|+|.++.+.+|..+.. .|++++|.+.+-..++.+-
T Consensus       224 ~l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         224 DLQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcc
Confidence               2345689999999999999999 9999999999988888744

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.50  E-value=0.0013  Score=58.67  Aligned_cols=87  Identities=22%  Similarity=0.179  Sum_probs=75.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG----DGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      .+.+.|.+.+++.++..|+.+..++..|+++. ..+++++|++.|++++.....    ..-.++.+++++.. +.++++|
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence            57999999999999999999999999999987 899999999999999854332    23455678999988 9999999


Q ss_pred             HHHHHHHHHhCCC
Q 046296          145 ESYFDQAVKSAPD  157 (167)
Q Consensus       145 ~~~~e~Al~l~P~  157 (167)
                      ..+|.+.++.+.-
T Consensus       325 ~~~f~~L~~~s~W  337 (468)
T PF10300_consen  325 AEYFLRLLKESKW  337 (468)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999997553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.49  E-value=0.00083  Score=55.35  Aligned_cols=78  Identities=17%  Similarity=0.067  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296           88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus        88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      .+..|++-+.... ..+++++|+..|+++....|..   ..++..++.++++ .+++++|+.++++-+++.|.++.+-..
T Consensus        33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            4566677676664 7999999999999999998865   4778889999999 999999999999999999999876655


Q ss_pred             ccC
Q 046296          165 LYL  167 (167)
Q Consensus       165 yy~  167 (167)
                      +||
T Consensus       111 ~Yl  113 (254)
T COG4105         111 YYL  113 (254)
T ss_pred             HHH
Confidence            553

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.48  E-value=0.00026  Score=39.58  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD  123 (167)
Q Consensus        90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~  123 (167)
                      .+|+.++.++. ..+++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence            57888999886 7999999999999999999953

...

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.00089  Score=60.71  Aligned_cols=98  Identities=19%  Similarity=0.161  Sum_probs=75.0

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhC---------------------------CC----CHHHHHHHHHHHHHHcCCHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEAN---------------------------PG----NALLLGNYARFLKEVRGDFAKAE  110 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~---------------------------P~----n~~~l~~lA~~l~~~~gd~e~A~  110 (167)
                      +++.++.++|++|...|+..++-+                           |.    ..+.++|.|.++. ..++|.+|+
T Consensus       117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i-~~gky~qA~  195 (652)
T KOG2376|consen  117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILI-ENGKYNQAI  195 (652)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHH-hcccHHHHH
Confidence            356778889999999998884332                           22    3346778888776 789999999


Q ss_pred             HHHHHHHHh--------CCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296          111 ELCGRAILA--------NPG-------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       111 ~~~~rAl~l--------~P~-------~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      +++++|+++        +-+       -..+...++.++.. +|+-+||...|...|+.+|-|...
T Consensus       196 elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~-~Gqt~ea~~iy~~~i~~~~~D~~~  260 (652)
T KOG2376|consen  196 ELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL-QGQTAEASSIYVDIIKRNPADEPS  260 (652)
T ss_pred             HHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhcCCCchH
Confidence            999999543        111       13456678889998 999999999999999999977643

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.45  E-value=0.00084  Score=59.96  Aligned_cols=85  Identities=21%  Similarity=0.130  Sum_probs=67.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CC----
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---------------------GD----  123 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P---------------------~~----  123 (167)
                      .+..+-+++-++||+++|+-+.++.-||.   +...-..+|+++|++|++...                     .+    
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            45677788899999999999999887774   345567888888888886521                     01    


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      ..+...+|.++++ .|+.+||++.|+..++..|.
T Consensus       259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~  291 (539)
T PF04184_consen  259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPN  291 (539)
T ss_pred             hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCc
Confidence            3455678999998 99999999999999998886

The molecular function of this protein is uncertain.

>PLN03077 Protein ECB2; Provisional

Probab=97.45  E-value=0.0011  Score=62.60  Aligned_cols=89  Identities=12%  Similarity=0.085  Sum_probs=44.5

Q ss_pred             cCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      +.+.+++|..+|+++.+..+-  +...+..+..+|. +.|++++|++++++. .+.|+ +.+|..+-..+.. .++.+.|
T Consensus       601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~-~~~~e~~  676 (857)
T PLN03077        601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNACRI-HRHVELG  676 (857)
T ss_pred             hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH-cCChHHH
Confidence            345566666666666543222  1234444444444 456666666555543 23333 3334444344444 5555555


Q ss_pred             HHHHHHHHHhCCCCH
Q 046296          145 ESYFDQAVKSAPDDW  159 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~  159 (167)
                      +...+++++++|+++
T Consensus       677 e~~a~~l~~l~p~~~  691 (857)
T PLN03077        677 ELAAQHIFELDPNSV  691 (857)
T ss_pred             HHHHHHHHhhCCCCc
Confidence            555555555555554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.43  E-value=0.00086  Score=61.87  Aligned_cols=86  Identities=7%  Similarity=0.009  Sum_probs=52.1

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      |.+.+++++|.+.++++ ...| +...|..+...+. ..++++.|+..+++++++.|++...+..+..+|.. .|++++|
T Consensus       472 l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-~G~~~~A  547 (697)
T PLN03081        472 LGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-SGRQAEA  547 (697)
T ss_pred             HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-CCCHHHH
Confidence            34455666666665543 1223 2344555555554 56667777777777777777766666666666666 7777777


Q ss_pred             HHHHHHHHHh
Q 046296          145 ESYFDQAVKS  154 (167)
Q Consensus       145 ~~~~e~Al~l  154 (167)
                      .+++++..+.
T Consensus       548 ~~v~~~m~~~  557 (697)
T PLN03081        548 AKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHc
Confidence            7776666543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.42  E-value=0.0014  Score=49.64  Aligned_cols=63  Identities=25%  Similarity=0.237  Sum_probs=56.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296           95 YARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus        95 lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      -+..+. ..++++.|++.|.+||.+-|.++.+|.+.+..+.. +++.++|+.-+++|+++.-...
T Consensus        49 ~~vala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~t  111 (175)
T KOG4555|consen   49 KAIALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQT  111 (175)
T ss_pred             HHHHHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccc
Confidence            355565 68999999999999999999999999999999998 9999999999999999966543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.38  E-value=0.0004  Score=38.23  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          126 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      +++.+|.++.. .+++++|+++|+++++..|++
T Consensus         2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence            56677777777 777777777777777777763

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.36  E-value=0.0028  Score=61.64  Aligned_cols=84  Identities=17%  Similarity=0.131  Sum_probs=34.4

Q ss_pred             cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           67 NNHGSSSTDAYNEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~-P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +.+++++|+..|+++.+.+ +.++..|+.+...+. ..+++++|+.+|++..+.  .|+ ..++..+...+.+ .+++++
T Consensus       591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k-~G~~ee  667 (1060)
T PLN03218        591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH-AGDLDK  667 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-CCCHHH
Confidence            3444455555555444443 223333433333333 344444444444444433  222 2233333333333 444444


Q ss_pred             HHHHHHHHHH
Q 046296          144 AESYFDQAVK  153 (167)
Q Consensus       144 A~~~~e~Al~  153 (167)
                      |+++|+++++
T Consensus       668 A~~l~~eM~k  677 (1060)
T PLN03218        668 AFEILQDARK  677 (1060)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.34  E-value=0.0011  Score=54.89  Aligned_cols=67  Identities=27%  Similarity=0.257  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           92 LGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus        92 l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      +++.|.-++ ..++|..|+..|..-|+.-|++   +++++.|+.+++. +++|++|..+|..+++-.|+.+.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~K  213 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPK  213 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCC
Confidence            555566565 6899999999999999999976   6899999999999 99999999999999999998764

>smart00028 TPR Tetratricopeptide repeats

Probab=97.33  E-value=0.0004  Score=36.24  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          125 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      .++..+|.+++. ++++++|+.+|+++++++|+
T Consensus         2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence            345666667666 77777777777777776664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.31  E-value=0.00056  Score=59.05  Aligned_cols=63  Identities=16%  Similarity=0.057  Sum_probs=56.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           94 NYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus        94 ~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      ..++-++ .++.|++|+.||.++|.++|.|+..+.+.|.+|++ +.+|..|+.-...||.++-..
T Consensus       102 E~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y  164 (536)
T KOG4648|consen  102 ERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLY  164 (536)
T ss_pred             Hhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHH
Confidence            3455565 78999999999999999999999999999999999 999999999999999987543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.30  E-value=0.00095  Score=42.24  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 046296           91 LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYA  131 (167)
Q Consensus        91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA  131 (167)
                      .++.+|..++ ..++|++|..+++++|+++|+|..+.....
T Consensus         3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4455565555 677777777777777777777766655443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.002  Score=57.60  Aligned_cols=96  Identities=19%  Similarity=0.208  Sum_probs=71.3

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHcCCHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSL--YADLIWQAHKDASRA  144 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~--lA~~l~~~~g~~~eA  144 (167)
                      +..++++...+|++-|+..|.|-.+|..+|.+-. ..++.+.|..+|+-||....-+..-+..  |-.+-+. .+.+++|
T Consensus       449 qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~-~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~-~~E~eka  526 (677)
T KOG1915|consen  449 QLREFDRCRKLYEKFLEFSPENCYAWSKYAELET-SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE-EGEFEKA  526 (677)
T ss_pred             HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh-cchHHHH
Confidence            3467888888888888889988888888887654 7888888888888888765544433333  3344455 6888899


Q ss_pred             HHHHHHHHHhCCCCHHHHHhc
Q 046296          145 ESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ..+|++.|+..+..+ ++.++
T Consensus       527 R~LYerlL~rt~h~k-vWisF  546 (677)
T KOG1915|consen  527 RALYERLLDRTQHVK-VWISF  546 (677)
T ss_pred             HHHHHHHHHhcccch-HHHhH
Confidence            999999998888766 55443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.27  E-value=0.0011  Score=54.10  Aligned_cols=72  Identities=17%  Similarity=0.109  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296           90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus        90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ..++..+.++ ...|-..-|.--|.+++.+.|+-|.+...++..+.. .++|+.|.+.|.-.++++|.+.+++-
T Consensus        66 ~l~fERGvlY-DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~l  137 (297)
T COG4785          66 QLLFERGVLY-DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHL  137 (297)
T ss_pred             HHHHHhcchh-hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHh
Confidence            3444455433 366777888888999999999999999999999998 99999999999999999999988773

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.27  E-value=0.0043  Score=55.56  Aligned_cols=95  Identities=18%  Similarity=0.037  Sum_probs=75.3

Q ss_pred             cCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC---
Q 046296           67 NNHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPGDGNILSLYADLIWQAHKD---  140 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-~P~~~~al~~lA~~l~~~~g~---  140 (167)
                      +.|+.++|++.|+..++.+|.  +..++.++..+|. ..+.|.++...+.|-=++ -|+++.+.+.-|.+.++..++   
T Consensus       271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs  349 (539)
T PF04184_consen  271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFS  349 (539)
T ss_pred             HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccC
Confidence            458899999999999998886  5668889998886 799999999999986544 378888888877766542222   


Q ss_pred             ------------HHHHHHHHHHHHHhCCCCHHHH
Q 046296          141 ------------ASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       141 ------------~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                                  ...|++.+.+|++.+|..|.++
T Consensus       350 ~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  350 PEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             chhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence                        1347899999999999988665

The molecular function of this protein is uncertain.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.26  E-value=0.0041  Score=43.35  Aligned_cols=74  Identities=16%  Similarity=0.035  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296           74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD--GNILSLYADLIWQAHKDASRAESYFD  149 (167)
Q Consensus        74 A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~--~~al~~lA~~l~~~~g~~~eA~~~~e  149 (167)
                      .+..++++++.+|+|+.+.+.+|..+. ..+++++|++.+-.+++.+|+.  ..+.-.+-.++-. .|.-+.-..-|+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~plv~~~R   82 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGDPLVSEYR   82 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-HHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCChHHHHHH
Confidence            456788999999999999999999886 7999999999999999998765  4444444333333 555333333333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.26  E-value=0.0012  Score=46.06  Aligned_cols=49  Identities=22%  Similarity=0.136  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          109 AEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       109 A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      .+..++++++.+|+|..+.+.+|..+.. .|++++|++.+..+++.+|+.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccc
Confidence            4577899999999999999999999999 999999999999999998865

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.26  E-value=0.00064  Score=39.10  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          126 ILSLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      ++.++|.++.. +|++++|+++|+++|.
T Consensus         1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQ-QGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHH-CT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            35566777776 7777777777777443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.26  E-value=0.0036  Score=45.46  Aligned_cols=90  Identities=11%  Similarity=-0.008  Sum_probs=69.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHH---HcCC-------HHHHHHHHHHHHHhCCCCHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALL---LGNYARFLKE---VRGD-------FAKAEELCGRAILANPGDGNILSLY  130 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~---l~~lA~~l~~---~~gd-------~e~A~~~~~rAl~l~P~~~~al~~l  130 (167)
                      -++++|++-+|+++.+..+..++++...   +..-+.++..   ...+       +-.|+++|.+++.+.|+.+..++.+
T Consensus         5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~l   84 (111)
T PF04781_consen    5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFEL   84 (111)
T ss_pred             HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHH
Confidence            4678899999999999999999988743   3333333321   1122       3568899999999999999999998


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          131 ADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       131 A~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      |.-+-. ...|++++..-+++|.+
T Consensus        85 a~~l~s-~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   85 ASQLGS-VKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHhhh-HHHHHHHHHHHHHHhcc
Confidence            887666 67788888888888876

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.24  E-value=0.0023  Score=59.11  Aligned_cols=85  Identities=8%  Similarity=-0.040  Sum_probs=36.5

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      |.+.+++++|...|+++   .+.+...|+.+...+. ..+++++|+++|++..+.. .-+..++..+..++.. .+++++
T Consensus       269 y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~-~g~~~~  343 (697)
T PLN03081        269 YSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-LALLEH  343 (697)
T ss_pred             HHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-ccchHH
Confidence            44445555555555443   2234444444444443 4455555555554443321 1122233333333443 444444


Q ss_pred             HHHHHHHHHHh
Q 046296          144 AESYFDQAVKS  154 (167)
Q Consensus       144 A~~~~e~Al~l  154 (167)
                      |.++++.+++.
T Consensus       344 a~~i~~~m~~~  354 (697)
T PLN03081        344 AKQAHAGLIRT  354 (697)
T ss_pred             HHHHHHHHHHh
Confidence            44444444443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.0023  Score=55.14  Aligned_cols=93  Identities=14%  Similarity=0.047  Sum_probs=65.7

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPGD---GNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-~P~~---~~al~~lA~~l~~~~g~~~  142 (167)
                      .++++-+|...+++.|+-.|.+..++..--..++ ..|+...-...++|.|-. +|+-   ..+.-.|+-.+.+ .|-|+
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccch
Confidence            3456777777788888888888877766555554 567777777777777766 6655   4555566667777 77777


Q ss_pred             HHHHHHHHHHHhCCCCHHH
Q 046296          143 RAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~  161 (167)
                      +|++.-++|++++|.++.+
T Consensus       193 dAEk~A~ralqiN~~D~Wa  211 (491)
T KOG2610|consen  193 DAEKQADRALQINRFDCWA  211 (491)
T ss_pred             hHHHHHHhhccCCCcchHH
Confidence            7777777777777777643

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.21  E-value=0.0056  Score=59.64  Aligned_cols=86  Identities=16%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             hcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCC
Q 046296           66 NNNHGSSSTDAYNEKMIEA----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l----~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-P~~~~al~~lA~~l~~~~g~  140 (167)
                      .+.+++++|...|+++.+.    .|+ ...++.+...+. ..+++++|+++|++..+.+ +.++.+|..+...|.+ .|+
T Consensus       553 ~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~-k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G~  629 (1060)
T PLN03218        553 GQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA-NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KGD  629 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCC
Confidence            3445555555555555442    333 233333333443 4556666666666655554 3344555555555555 666


Q ss_pred             HHHHHHHHHHHHHh
Q 046296          141 ASRAESYFDQAVKS  154 (167)
Q Consensus       141 ~~eA~~~~e~Al~l  154 (167)
                      +++|+.+|++..+.
T Consensus       630 ~deAl~lf~eM~~~  643 (1060)
T PLN03218        630 WDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHHHc
Confidence            66666666665554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.21  E-value=0.0042  Score=58.43  Aligned_cols=89  Identities=10%  Similarity=0.059  Sum_probs=71.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLYAD  132 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~-----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~lA~  132 (167)
                      ++...+++++|..+++++++..|...     .++..++.++. ..+++++|+.++++++.+....      ..++.+++.
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~  539 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE  539 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            45667899999999999999655532     34566777765 7999999999999999764321      245667888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Q 046296          133 LIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       133 ~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      +++. +|++++|+.++++++.+
T Consensus       540 ~~~~-~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        540 ILFA-QGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHH-CCCHHHHHHHHHHHHHH
Confidence            9998 99999999999999986

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.0038  Score=56.71  Aligned_cols=95  Identities=18%  Similarity=0.096  Sum_probs=80.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCCHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLY------ADLIWQAHKDAS  142 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~l------A~~l~~~~g~~~  142 (167)
                      +....+...++.++..+|+++.+..+|+..+......+..+....+.+....|++..++..+      +.++-. .++..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~  159 (620)
T COG3914          81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGRTA  159 (620)
T ss_pred             ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hccHH
Confidence            66678888899999999999999999999886544556667777888999999999998887      777776 89999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++..++++++.+.|.++.++.-
T Consensus       160 ~~~~~l~~~~d~~p~~~~~~~~  181 (620)
T COG3914         160 EAELALERAVDLLPKYPRVLGA  181 (620)
T ss_pred             HHHHHHHHHHHhhhhhhhhHhH
Confidence            9999999999999999877643

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.18  E-value=0.0017  Score=52.48  Aligned_cols=70  Identities=19%  Similarity=0.068  Sum_probs=61.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      .+.++.+.++.|+..+.+||+++|.+..++...|.++. .+..++.|++-|++.++++|....+.-..+.+
T Consensus       142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye-k~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE-KMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            45677889999999999999999999999999898775 78999999999999999999998776665554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.0041  Score=56.55  Aligned_cols=90  Identities=13%  Similarity=0.106  Sum_probs=67.5

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHH---------------------------------HHHHHcCCHHHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYAR---------------------------------FLKEVRGDFAKAEE  111 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~---------------------------------~l~~~~gd~e~A~~  111 (167)
                      +.++++|++|+....+.|...|+++.++...-.                                 +++ +.+..++|+.
T Consensus        22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y-rlnk~Dealk  100 (652)
T KOG2376|consen   22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY-RLNKLDEALK  100 (652)
T ss_pred             hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH-HcccHHHHHH
Confidence            456688999999999999999998877643322                                 233 3455555555


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          112 LCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       112 ~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      .++   -+++.+..++...|.++++ +++|++|...|+..++.+.++.
T Consensus       101 ~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen  101 TLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             HHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchH
Confidence            555   4567777788889999999 9999999999999988776654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.0014  Score=54.92  Aligned_cols=93  Identities=15%  Similarity=0.145  Sum_probs=76.6

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANP------GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQA  137 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P------~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~  137 (167)
                      +.++-|+.+.|..+|+++-+.+.      .+..++.+.+.++. ..+++..|...|.+.++.||.++.+..+.|.++.- 
T Consensus       221 ~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY-  298 (366)
T KOG2796|consen  221 ISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY-  298 (366)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHH-
Confidence            44566889999999995544322      24556667776654 68899999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 046296          138 HKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       138 ~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      .++...|++.+++++++.|..
T Consensus       299 lg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  299 LGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHHHHhccCCcc
Confidence            999999999999999999964

>PLN03077 Protein ECB2; Provisional

Probab=97.15  E-value=0.0036  Score=59.10  Aligned_cols=90  Identities=13%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             hhhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcC
Q 046296           64 YSNNNHGSSSTDAYNEKMIE--ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--GDGNILSLYADLIWQAHK  139 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~--l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P--~~~~al~~lA~~l~~~~g  139 (167)
                      .|.+.++.++|+.+|+++++  +.|+...+..-+. .+. ..+++++|.++|++..+..+  -+...+..+..++.+ .|
T Consensus       563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~-a~~-~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r-~G  639 (857)
T PLN03077        563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC-ACS-RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR-AG  639 (857)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH-HHh-hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-CC
Confidence            34556778888888887776  3566555444333 343 57778888888887774432  233556667777777 78


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 046296          140 DASRAESYFDQAVKSAPD  157 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P~  157 (167)
                      ++++|++++++. .+.|+
T Consensus       640 ~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        640 KLTEAYNFINKM-PITPD  656 (857)
T ss_pred             CHHHHHHHHHHC-CCCCC
Confidence            888888877764 34554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.0025  Score=55.00  Aligned_cols=87  Identities=20%  Similarity=0.136  Sum_probs=73.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA-NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH  138 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l-~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~  138 (167)
                      .+|+-+|+.+.-...+++++-. +|+-|   .+...|+..|. ..+-|++|++..++|+++||.+.-+...++.++.. .
T Consensus       145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~  222 (491)
T KOG2610|consen  145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-N  222 (491)
T ss_pred             hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-c
Confidence            5677788888889999999988 77764   44556776675 79999999999999999999999999999999988 8


Q ss_pred             CCHHHHHHHHHHH
Q 046296          139 KDASRAESYFDQA  151 (167)
Q Consensus       139 g~~~eA~~~~e~A  151 (167)
                      +++.++.+.+++-
T Consensus       223 ~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  223 GRHKEGKEFMYKT  235 (491)
T ss_pred             chhhhHHHHHHhc
Confidence            9999998877654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.11  E-value=0.0031  Score=39.88  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          125 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +.++.+|..+++ .++|++|..+.+.+|+++|+|..+.
T Consensus         2 d~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    2 DCLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hhHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            356788888888 9999999999999999999988765

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.0066  Score=50.64  Aligned_cols=97  Identities=18%  Similarity=0.176  Sum_probs=79.7

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-H
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS-R  143 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~-e  143 (167)
                      +.+...-.+|+++-+.+|.++|.|..+|...-.+|.....++.+-++++.+.++-+|+|..+|...-.++-. .+++. +
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~r  131 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFR  131 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccc
Confidence            445567788999999999999999999988777777667788999999999999999999999887666665 78887 7


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q 046296          144 AESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l  162 (167)
                      -+...+.+|..+..|-.++
T Consensus       132 ELef~~~~l~~DaKNYHaW  150 (318)
T KOG0530|consen  132 ELEFTKLMLDDDAKNYHAW  150 (318)
T ss_pred             hHHHHHHHHhccccchhhh
Confidence            7888888888777665544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.09  E-value=0.0038  Score=61.42  Aligned_cols=91  Identities=14%  Similarity=0.300  Sum_probs=83.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      .+.+++++-++|...+++||+.-|.  +..+..-.|++.+ ..+|.+.+..+|+-.+...|...+.|.-|...-.. +++
T Consensus      1572 ~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik-~~~ 1649 (1710)
T KOG1070|consen 1572 DFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK-HGD 1649 (1710)
T ss_pred             HHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc-cCC
Confidence            3566777888999999999999998  8899999998776 89999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHHhC
Q 046296          141 ASRAESYFDQAVKSA  155 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~  155 (167)
                      .+-++.+|++++.+.
T Consensus      1650 ~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998874

>PRK10941 hypothetical protein; Provisional

Probab=97.09  E-value=0.0057  Score=50.92  Aligned_cols=67  Identities=15%  Similarity=0.010  Sum_probs=59.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296           94 NYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus        94 ~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      |+=.++ ...+++++|+.+.++.+.++|+++.-+...|.++.+ .+.+..|..-++.-|+..|++|.+.
T Consensus       186 nLK~~~-~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        186 TLKAAL-MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHH-HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHH
Confidence            333334 378999999999999999999999999999999999 9999999999999999999998653

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.0031  Score=53.72  Aligned_cols=84  Identities=12%  Similarity=-0.071  Sum_probs=76.9

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      ++..+++.|++++..-.+.+|.+...+..++.+++ ..+++..|..+|++.-.+.|........+|..+++ .+.+..|+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADAL   98 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADAL   98 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHH
Confidence            67788999999999999999999999999999998 79999999999999999999999999999999998 99999988


Q ss_pred             HHHHHH
Q 046296          146 SYFDQA  151 (167)
Q Consensus       146 ~~~e~A  151 (167)
                      .+....
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            766544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.07  E-value=0.0077  Score=45.52  Aligned_cols=74  Identities=19%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296           88 NALLLGNYARFLKE--VRGDFAKAEELCGRAIL-ANPG-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus        88 n~~~l~~lA~~l~~--~~gd~e~A~~~~~rAl~-l~P~-~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      .....++||++|-.  ...|..+.+.+++..++ ..|. .-+.++.+|..+++ .++|++|++|.+..|+..|+|..++
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            45667788887741  23467889999999997 5564 45777889999999 9999999999999999999998775

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.0053  Score=53.36  Aligned_cols=92  Identities=12%  Similarity=0.030  Sum_probs=56.1

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhCC---------
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--------------LANP---------  121 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl--------------~l~P---------  121 (167)
                      |+..+++++|...|+-+.+.+.-+.+.+.++|.+.+ ..+.|.+|.....+|-              +++.         
T Consensus        67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~  145 (557)
T KOG3785|consen   67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHS  145 (557)
T ss_pred             HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            556788888888888888877777888888887665 4666666655444321              1111         


Q ss_pred             ---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          122 ---GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       122 ---~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                         +..+-...+|.+.+. .-.|++|+..|+++|.-+|+.
T Consensus       146 ~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey  184 (557)
T KOG3785|consen  146 SLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEY  184 (557)
T ss_pred             HHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhh
Confidence               001111233444444 556777777777777766653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.05  E-value=0.0013  Score=58.01  Aligned_cols=93  Identities=12%  Similarity=0.011  Sum_probs=74.2

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CHHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILAN----PG--DGNILSL  129 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~----P~--~~~al~~  129 (167)
                      ++.|+-.++|++|+..-+.-|++....      ..++.|++.++. ..++++.|+++|++++.+.    ..  .+...+.
T Consensus       202 GNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYS  280 (639)
T KOG1130|consen  202 GNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS  280 (639)
T ss_pred             CceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            467888999999999988877775432      357888998886 7999999999999976543    22  3556678


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      |+..|.. .+++++||+|+++-|++..
T Consensus       281 LgNtytl-l~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  281 LGNTYTL-LKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             hhhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            8889998 9999999999999888754

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.02  E-value=0.0078  Score=48.20  Aligned_cols=91  Identities=24%  Similarity=0.280  Sum_probs=73.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      ++.+..+++..|...+++..+.+|.  .|.....++++|. ..+.+++|+..|+.|+...|. +.+...|+..+.. +|+
T Consensus       132 ~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la-a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~-qgr  208 (251)
T COG4700         132 QAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA-AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAK-QGR  208 (251)
T ss_pred             HHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH-hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHH-hcc
Confidence            4566778999999999999999996  5777788899997 899999999999999998876 4566788999998 998


Q ss_pred             HHHHHHHH----HHHHHhCC
Q 046296          141 ASRAESYF----DQAVKSAP  156 (167)
Q Consensus       141 ~~eA~~~~----e~Al~l~P  156 (167)
                      .++|...+    +.+.+..|
T Consensus       209 ~~ea~aq~~~v~d~~~r~~~  228 (251)
T COG4700         209 LREANAQYVAVVDTAKRSRP  228 (251)
T ss_pred             hhHHHHHHHHHHHHHHhcch
Confidence            77765544    44444444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.99  E-value=0.0062  Score=57.28  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=64.7

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG--------DGNILSL  129 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~--------~~~al~~  129 (167)
                      ++...+++++|..+++++++.....      ..++.+++.++. ..|++++|+.++++++.+...        ...++..
T Consensus       500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  578 (903)
T PRK04841        500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI  578 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            3456788999999999988764321      234556777775 688999999998888876221        2234556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      ++.+++. +|++++|..++++++.+.
T Consensus       579 la~~~~~-~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        579 RAQLLWE-WARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHH-hcCHHHHHHHHHHhHHhh
Confidence            7778888 888999988888887763

>PRK10941 hypothetical protein; Provisional

Probab=96.99  E-value=0.0062  Score=50.71  Aligned_cols=69  Identities=9%  Similarity=-0.054  Sum_probs=62.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      +|.+.+++++|+++.++++.++|++|.-+...|.++. +.+.+..|..-++..|+..|+++.+......+
T Consensus       190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            5778899999999999999999999999999998886 89999999999999999999999887655444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.96  E-value=0.0073  Score=48.17  Aligned_cols=93  Identities=13%  Similarity=0.084  Sum_probs=70.6

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      .+...+++++|+..++.++...-+.   +.+-.++|.++. ..+.+++|+..+......+ -.+......|.++.. +|+
T Consensus        98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~-kg~  174 (207)
T COG2976          98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEES-WAAIVAELRGDILLA-KGD  174 (207)
T ss_pred             HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH-cCc
Confidence            3456689999999999998654332   345567898887 7999999998877654311 123345578999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCH
Q 046296          141 ASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~  159 (167)
                      -++|+..|++|++..++.+
T Consensus       175 k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         175 KQEARAAYEKALESDASPA  193 (207)
T ss_pred             hHHHHHHHHHHHHccCChH
Confidence            9999999999999986655

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.95  E-value=0.012  Score=45.41  Aligned_cols=87  Identities=21%  Similarity=0.150  Sum_probs=73.2

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES  146 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~  146 (167)
                      ..++.+.+...+.-+--+.|+.+.+-..-+.++. .++++.+|+.+++.+.+..|..+.+...++.+|+. +++.+= ..
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~W-r~   98 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPSW-RR   98 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChHH-HH
Confidence            3468899999999999999999999998888775 89999999999999999999999999999999998 888663 23


Q ss_pred             HHHHHHHhCC
Q 046296          147 YFDQAVKSAP  156 (167)
Q Consensus       147 ~~e~Al~l~P  156 (167)
                      +-+++++..|
T Consensus        99 ~A~evle~~~  108 (160)
T PF09613_consen   99 YADEVLESGA  108 (160)
T ss_pred             HHHHHHhcCC
Confidence            3445555554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.94  E-value=0.0041  Score=56.26  Aligned_cols=89  Identities=25%  Similarity=0.090  Sum_probs=78.2

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~--~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      ....|+..|.++++.-|.....+.+.|.++..  -.++.-.|+.-+..|+++||....+++.|+.++++ .+++.+|++.
T Consensus       389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~  467 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhh
Confidence            36678999999999999999999999988752  13577889999999999999999999999999999 9999999999


Q ss_pred             HHHHHHhCCCCH
Q 046296          148 FDQAVKSAPDDW  159 (167)
Q Consensus       148 ~e~Al~l~P~~~  159 (167)
                      ...+....|.+.
T Consensus       468 ~~alq~~~Ptd~  479 (758)
T KOG1310|consen  468 HWALQMSFPTDV  479 (758)
T ss_pred             HHHHhhcCchhh
Confidence            888888888543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.93  E-value=0.0017  Score=33.63  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD  123 (167)
Q Consensus        90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~  123 (167)
                      .++..++.++. ..+++++|+.+|+++++++|.+
T Consensus         2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYL-KLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCC
Confidence            46778888886 7999999999999999998864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.92  E-value=0.0056  Score=45.18  Aligned_cols=54  Identities=13%  Similarity=0.007  Sum_probs=46.0

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      .+...+++++|+..+++++.++|-+..++..+-.++. ..|+..+|+..|++..+
T Consensus        71 ~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   71 ALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence            4567789999999999999999999999999999887 89999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.92  E-value=0.0077  Score=56.91  Aligned_cols=98  Identities=14%  Similarity=0.023  Sum_probs=81.0

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      ..++.+..++|..+++..-..-|++-..+-.+-.++. ..+++++|..+|++|+..+|+ -+.++.+-.++.+ -+.|.+
T Consensus        52 sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~  128 (932)
T KOG2053|consen   52 SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKK  128 (932)
T ss_pred             HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHH
Confidence            3567789999998777777777888888888888886 799999999999999999999 7788888888888 788877


Q ss_pred             HHHHHHHHHHhCCCCHHHHHh
Q 046296          144 AESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l~~  164 (167)
                      -.+.--+.-+.-|.+++++++
T Consensus       129 qQkaa~~LyK~~pk~~yyfWs  149 (932)
T KOG2053|consen  129 QQKAALQLYKNFPKRAYYFWS  149 (932)
T ss_pred             HHHHHHHHHHhCCcccchHHH
Confidence            666666666788999987754

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.002  Score=53.06  Aligned_cols=60  Identities=18%  Similarity=0.097  Sum_probs=55.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ....|..|+.+|.+||.++|..+..+.+-|.++++ ..+++.+..-.++|++++|+....+
T Consensus        22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h   81 (284)
T KOG4642|consen   22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAH   81 (284)
T ss_pred             chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHH
Confidence            45679999999999999999999999999999999 9999999999999999999977554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.84  E-value=0.0016  Score=53.40  Aligned_cols=60  Identities=15%  Similarity=0.190  Sum_probs=49.9

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN  125 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~  125 (167)
                      ..+.++.+.|.+.|.+++++.|....-|+.++... ++.++++.|.+.|++.++++|.+.-
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccccc
Confidence            34557888889999999999999999999888755 5889999999999999999987753

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.004  Score=54.14  Aligned_cols=85  Identities=13%  Similarity=-0.017  Sum_probs=70.1

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~-~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +.++.++.-|+.+++-.+.++.... .....+|.+++ ..++|++|...|+-+...+.-+++.+.++|.+.|- .|.|.+
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~e  109 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIE  109 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHH
Confidence            3455689999999998887765543 44455677776 89999999999999999888888999999999998 999999


Q ss_pred             HHHHHHHH
Q 046296          144 AESYFDQA  151 (167)
Q Consensus       144 A~~~~e~A  151 (167)
                      |.+...+|
T Consensus       110 A~~~~~ka  117 (557)
T KOG3785|consen  110 AKSIAEKA  117 (557)
T ss_pred             HHHHHhhC
Confidence            98877665

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.83  E-value=0.003  Score=34.55  Aligned_cols=33  Identities=30%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD  123 (167)
Q Consensus        90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~  123 (167)
                      ++++.+|.++. ..+++++|++.|+++++..|++
T Consensus         1 ~a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYY-KLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHH-HccCHHHHHHHHHHHHHHCcCC
Confidence            36788898887 7899999999999999999975

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.83  E-value=0.0028  Score=36.38  Aligned_cols=28  Identities=32%  Similarity=0.498  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           91 LLGNYARFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      +|.++|.++. ..+++++|+++|+++|.+
T Consensus         1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYR-QQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence            4678898886 899999999999995544

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.011  Score=48.69  Aligned_cols=91  Identities=22%  Similarity=0.123  Sum_probs=47.0

Q ss_pred             CChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H-----HHHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-G-----NILSLYADLIWQ  136 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-~-----~al~~lA~~l~~  136 (167)
                      .+..+|+.+++++|++.-+--      ..+..+|.++.....++++|+.+|++|-+--... .     ..+.-.|..-..
T Consensus        87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~  166 (288)
T KOG1586|consen   87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ  166 (288)
T ss_pred             cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence            355555566666655543321      1222455554323356777777777766543221 1     112222333333


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH
Q 046296          137 AHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       137 ~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                       .++|.+|+..|++..+..-+|+.
T Consensus       167 -leqY~~Ai~iyeqva~~s~~n~L  189 (288)
T KOG1586|consen  167 -LEQYSKAIDIYEQVARSSLDNNL  189 (288)
T ss_pred             -HHHHHHHHHHHHHHHHHhccchH
Confidence             56777777777777766555553

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.80  E-value=0.008  Score=53.58  Aligned_cols=90  Identities=17%  Similarity=0.075  Sum_probs=69.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILS-LYADLIWQA  137 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~-~lA~~l~~~  137 (167)
                      .++..+++.++|+..|++++.....-    ...++.++.++. .+.++++|..+|.+.++.+.-+...+. ..|.++.+ 
T Consensus       275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~-  352 (468)
T PF10300_consen  275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM-  352 (468)
T ss_pred             HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-
Confidence            56677899999999999998644443    344567787775 789999999999999998776554444 45666666 


Q ss_pred             cCCH-------HHHHHHHHHHHHh
Q 046296          138 HKDA-------SRAESYFDQAVKS  154 (167)
Q Consensus       138 ~g~~-------~eA~~~~e~Al~l  154 (167)
                      .++.       ++|.++|+++-.+
T Consensus       353 l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHHHHH
Confidence            8988       8888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.70  E-value=0.0022  Score=57.47  Aligned_cols=100  Identities=14%  Similarity=0.062  Sum_probs=78.9

Q ss_pred             chhhcCCChHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCC---
Q 046296           63 NYSNNNHGSSSTDAYNEKM-IEANPG--------NALLLGNYARFLKEVRGDFAKAEELCGRAIL---------ANP---  121 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kA-L~l~P~--------n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~---------l~P---  121 (167)
                      ++++..+++.+|.+.+... |...|.        .-.+|+|++.+.+ ..+.|..+..+|.+|++         +.|   
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~  326 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGLKPAKT  326 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence            4566778888888876553 444555        2246788998887 78999999999999996         112   


Q ss_pred             ------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          122 ------GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       122 ------~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                            +.-+++++.+..+.. .|++-.|.++|.+|++.--.||++|-.
T Consensus       327 ~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLR  374 (696)
T KOG2471|consen  327 FTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLR  374 (696)
T ss_pred             eehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHH
Confidence                  456889999999999 999999999999999988888887743

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.69  E-value=0.0049  Score=35.35  Aligned_cols=30  Identities=13%  Similarity=0.129  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          124 GNILSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      +.++.++|.++.. ++++++|++++++++++
T Consensus         2 a~~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            3567788888888 88888888888888875

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.68  E-value=0.046  Score=46.30  Aligned_cols=84  Identities=17%  Similarity=0.197  Sum_probs=68.2

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH--KDASRAESY  147 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~--g~~~eA~~~  147 (167)
                      -.++-+.+|++||+.+|++...+..|-.... ..-+.++..+.+++++..+|+++..|..|-.......  -.+++....
T Consensus        46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~  124 (321)
T PF08424_consen   46 LAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV  124 (321)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            3567889999999999999999988877765 6678899999999999999999999988766544312  246788888


Q ss_pred             HHHHHHh
Q 046296          148 FDQAVKS  154 (167)
Q Consensus       148 ~e~Al~l  154 (167)
                      |.++|+.
T Consensus       125 y~~~l~~  131 (321)
T PF08424_consen  125 YEKCLRA  131 (321)
T ss_pred             HHHHHHH
Confidence            8888775

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.027  Score=46.72  Aligned_cols=93  Identities=14%  Similarity=0.094  Sum_probs=66.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLL------GNYARFLKEVRGDFAKAEELCGRAILA-----NPGDGNILSLYAD  132 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l------~~lA~~l~~~~gd~e~A~~~~~rAl~l-----~P~~~~al~~lA~  132 (167)
                      .|....++++|..++++|++-..+|...+      -..+.++. ....+.++..+|+||..+     .|+-+..-...|-
T Consensus        40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAa  118 (308)
T KOG1585|consen   40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAA  118 (308)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence            34455889999999999997666654332      22333343 678899999999999877     3555544445555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          133 LIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       133 ~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      -..+ .-++++|+++|++++.+--.+
T Consensus       119 k~le-nv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  119 KALE-NVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHhh-cCCHHHHHHHHHHHHHHHhcc
Confidence            5666 789999999999998874443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.62  E-value=0.034  Score=44.71  Aligned_cols=84  Identities=18%  Similarity=0.137  Sum_probs=63.0

Q ss_pred             CChHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------CHHHHH
Q 046296           69 HGSSSTDAYNEKMIEA----NPGN---ALLLGNYARFLKEVRGD-------FAKAEELCGRAILANPG------DGNILS  128 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l----~P~n---~~~l~~lA~~l~~~~gd-------~e~A~~~~~rAl~l~P~------~~~al~  128 (167)
                      -.+++|++.|.-||-.    .+++   +..+..+|.++. ..++       +.+|...|++|++....      ...+++
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            4788999998888753    2222   345666777665 5666       46677777777776532      357888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          129 LYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       129 ~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      .+|.+..+ .|++++|+++|.+++..
T Consensus       170 LigeL~rr-lg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRR-LGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHcC
Confidence            89999999 99999999999999986

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.60  E-value=0.011  Score=52.91  Aligned_cols=69  Identities=17%  Similarity=0.169  Sum_probs=58.1

Q ss_pred             hhcC-CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           65 SNNN-HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        65 y~~~-g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      |.++ +.+.+-...|.++|..+|++|..|..-|..+++..-+++.|..+|.++|+.+|+++..|..|-.+
T Consensus       114 f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  114 FCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             HHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence            3344 34778889999999999999999999888887655569999999999999999999998776543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.015  Score=48.82  Aligned_cols=92  Identities=16%  Similarity=0.138  Sum_probs=76.6

Q ss_pred             CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHHcCCH
Q 046296           69 HGSSSTDAYNEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAIL----AN--PGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~-P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~----l~--P~~~~al~~lA~~l~~~~g~~  141 (167)
                      ++|.-.+..+.+.++.+ |..|.....++.+.. +.||.+.|..+|++.-+    ++  ..+..++.+.+.++.- +++|
T Consensus       191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~  268 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNF  268 (366)
T ss_pred             hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccch
Confidence            56778889999999998 678999999999875 89999999999995443    33  2455677788888888 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHH
Q 046296          142 SRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      .+|...|.+.+..+|.++.+.
T Consensus       269 a~a~r~~~~i~~~D~~~~~a~  289 (366)
T KOG2796|consen  269 AEAHRFFTEILRMDPRNAVAN  289 (366)
T ss_pred             HHHHHHHhhccccCCCchhhh
Confidence            999999999999999887654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.0076  Score=51.42  Aligned_cols=72  Identities=14%  Similarity=0.072  Sum_probs=62.6

Q ss_pred             HHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           81 MIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus        81 AL~l~P--~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      .++.-|  +.+..+.+.+.+++ +.+++++|++-|..|++..--++-+.+++|.+++. .++++.|+++..+.|..
T Consensus       134 LveQlp~en~Ad~~in~gClly-kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  134 LVEQLPSENEADGQINLGCLLY-KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIER  207 (459)
T ss_pred             HHHhccCCCccchhccchheee-ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHh
Confidence            445556  56788889998887 79999999999999999999999999999999999 99999999988777654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.47  E-value=0.014  Score=51.71  Aligned_cols=91  Identities=9%  Similarity=-0.050  Sum_probs=72.3

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEAN----PG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANP------GDGNILSL  129 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~----P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P------~~~~al~~  129 (167)
                      ++.|.-.++++.|+++|++++.+.    ..  .+..-+.|+..+. ...++++|+.|+.|-|.|..      ....+++.
T Consensus       242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwS  320 (639)
T KOG1130|consen  242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWS  320 (639)
T ss_pred             chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            456777889999999999976553    22  2445567788887 68899999999998776643      45678889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      |+..+-. .+..++|+.+.++.+++
T Consensus       321 Lgna~~a-lg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  321 LGNAFNA-LGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHh-hhhHHHHHHHHHHHHHH
Confidence            9999998 99999999999998876

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.38  E-value=0.032  Score=48.52  Aligned_cols=93  Identities=15%  Similarity=0.106  Sum_probs=71.8

Q ss_pred             hhcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEA----NPGNALLLGNYARFLKEV---RGDFAKAEELCGR-AILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l----~P~n~~~l~~lA~~l~~~---~gd~e~A~~~~~r-Al~l~P~~~~al~~lA~~l~~  136 (167)
                      |..-.+|+.-+++.+..-.+    -++.+.+...||.+|. +   .|+.++|+..+.. .....+.+++++..+|.+|-.
T Consensus       151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD  229 (374)
T ss_pred             hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34446788777777776555    4567778888888886 6   7899999999999 555667899999999998754


Q ss_pred             H--------cCCHHHHHHHHHHHHHhCCCC
Q 046296          137 A--------HKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       137 ~--------~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      .        ....++|+.+|.++.+++|+.
T Consensus       230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  230 LFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            1        224679999999999999753

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.31  E-value=0.0084  Score=49.24  Aligned_cols=57  Identities=18%  Similarity=0.203  Sum_probs=54.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      ..+|.+.|.++|.+|+++.|....-|+.++....+ .++++.|.+.|++.++++|.+.
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCcccc
Confidence            57899999999999999999999999999998887 9999999999999999999874

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.30  E-value=0.0095  Score=51.90  Aligned_cols=92  Identities=15%  Similarity=-0.030  Sum_probs=73.3

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPG----------DGN  125 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----------~~~  125 (167)
                      ++++.....+++++++|++|+++..++.      .+...++.++. ...|+++|..+..+|.++...          ...
T Consensus       129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            3456666789999999999999866553      34556777665 789999999999999987542          245


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296          126 ILSLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      +++.++..+.. +|+.-.|.++.++|.++.
T Consensus       208 ~lyhmaValR~-~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  208 SLYHMAVALRL-LGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHHHHHH-hcccccHHHHHHHHHHHH
Confidence            67788888888 999999999999998763

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.28  E-value=0.036  Score=38.49  Aligned_cols=54  Identities=19%  Similarity=0.149  Sum_probs=42.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          102 VRGDFAKAEELCGRAILANPG----D-----GNILSLYADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~----~-----~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      ..+|+..|++.+.+.+.....    .     ..++.++|.+... .|++++|+..+++||++..
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence            588999998877777665332    2     4566788888888 9999999999999999854

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=96.27  E-value=0.045  Score=43.77  Aligned_cols=74  Identities=22%  Similarity=0.178  Sum_probs=56.2

Q ss_pred             CCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCH
Q 046296           68 NHGSSSTDAYNEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG----DGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P--~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----~~~al~~lA~~l~~~~g~~  141 (167)
                      +...++|...|.++ +-.|  ++++..+.+|.++  ...|.++|+.++.+++++.+.    |++++..|+.+++. ++++
T Consensus       119 r~~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY--~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~  194 (203)
T PF11207_consen  119 RFGDQEALRRFLQL-EGTPELETAELQYALATYY--TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNY  194 (203)
T ss_pred             ccCcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH--HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcch
Confidence            34556677766654 3333  4788888888766  478899999999999988654    48888999999998 8998


Q ss_pred             HHHH
Q 046296          142 SRAE  145 (167)
Q Consensus       142 ~eA~  145 (167)
                      +.|-
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            8874

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.00  E-value=0.19  Score=38.50  Aligned_cols=73  Identities=15%  Similarity=0.070  Sum_probs=65.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..+++++...+..+--+.|+.+.+-..-+.++. .++++.+|+..++...+-.|..+.....++.+++. ++|.+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~   95 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAE   95 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChH
Confidence            467888888888888899999999888887765 89999999999999999999999999999999998 88876

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.98  E-value=0.042  Score=50.87  Aligned_cols=87  Identities=24%  Similarity=0.311  Sum_probs=48.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH--cCCHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PGDGNILSLYADLIWQA--HKDASRA  144 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~~~~al~~lA~~l~~~--~g~~~eA  144 (167)
                      +-++.....|.++|.+.--.|....|||.+|. ...-+++|.+.|+|-|.+-  |+-.++|..|=......  .-..+.|
T Consensus       491 gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra  569 (835)
T KOG2047|consen  491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA  569 (835)
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            44555566666666666666666666666664 3445566666666666554  34445555443322220  1345666


Q ss_pred             HHHHHHHHHhCC
Q 046296          145 ESYFDQAVKSAP  156 (167)
Q Consensus       145 ~~~~e~Al~l~P  156 (167)
                      ..+|++||+.-|
T Consensus       570 RdLFEqaL~~Cp  581 (835)
T KOG2047|consen  570 RDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHHHhcCC
Confidence            666666666655

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.97  E-value=0.13  Score=42.73  Aligned_cols=98  Identities=13%  Similarity=0.140  Sum_probs=73.9

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPG-----------------  122 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~----n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~-----------------  122 (167)
                      +..+.+.++.|..++.++...++.    .|.+....+.++. .+++..+|+..++..+...+.                 
T Consensus       155 ~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (352)
T PF02259_consen  155 LARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE  233 (352)
T ss_pred             HHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc
Confidence            445668999999999999887632    5777888899887 799999999999888872111                 


Q ss_pred             -----------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          123 -----------------DGNILSLYADLIWQAH------KDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       123 -----------------~~~al~~lA~~l~~~~------g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                                       .+.++..+|..... .      ..+++++..|++|++++|+...++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~  296 (352)
T PF02259_consen  234 SLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWH  296 (352)
T ss_pred             ccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence                             12344455555555 5      7888999999999999998876554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.94  E-value=0.023  Score=32.41  Aligned_cols=30  Identities=30%  Similarity=0.351  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      ..++.++|.++. .++++++|+.++++++++
T Consensus         2 a~~~~~la~~~~-~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYR-AQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence            357889999987 799999999999999976

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.87  E-value=0.057  Score=49.06  Aligned_cols=74  Identities=19%  Similarity=0.202  Sum_probs=67.0

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296           79 EKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus        79 ~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      ++-|+.+|.|..+|+.|-.-+.  ...+++....|++.+..-|..+.+|..+....+. ..+|+.-+.+|.+.|...
T Consensus        10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvkv   83 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVKV   83 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH
Confidence            7889999999999998887653  5589999999999999999999999999999998 999999999999998753

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.87  E-value=0.057  Score=50.01  Aligned_cols=97  Identities=21%  Similarity=0.239  Sum_probs=58.2

Q ss_pred             CChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHHcCCHH
Q 046296           69 HGSSSTDAYNEKMIEAN--PGNALLLGNYARFLKEV--RGDFAKAEELCGRAILANPGD-G-NILSLYADLIWQAHKDAS  142 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~--P~n~~~l~~lA~~l~~~--~gd~e~A~~~~~rAl~l~P~~-~-~al~~lA~~l~~~~g~~~  142 (167)
                      ..+++|.+.|++.|.+-  |+-.++|+.|-.....+  .-.++.|..+|++||+.-|.. + .++..||.+--+ .|-..
T Consensus       525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe-~GLar  603 (835)
T KOG2047|consen  525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE-HGLAR  603 (835)
T ss_pred             HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hhHHH
Confidence            34677788888877764  45556666544322111  235788888888888877622 2 344456665555 67777


Q ss_pred             HHHHHHHHHHHhC-CCCHHHHHhcc
Q 046296          143 RAESYFDQAVKSA-PDDWLNLIKLY  166 (167)
Q Consensus       143 eA~~~~e~Al~l~-P~~~~~l~~yy  166 (167)
                      .|+..|++|-..- |.+-..+.|.|
T Consensus       604 ~amsiyerat~~v~~a~~l~myni~  628 (835)
T KOG2047|consen  604 HAMSIYERATSAVKEAQRLDMYNIY  628 (835)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            8888888875543 33334444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.86  E-value=0.068  Score=46.54  Aligned_cols=90  Identities=20%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILA-----------NPGDGNILSLYADLIWQ  136 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd-~e~A~~~~~rAl~l-----------~P~~~~al~~lA~~l~~  136 (167)
                      ..+++|+.+|+++.+++|+. ..-.|++.+|. ..+. ++...++-+-.+++           .-.+...+..++.+...
T Consensus       240 ~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~-~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL  317 (374)
T PF13281_consen  240 ESLDKAIEWYRKGFEIEPDY-YSGINAATLLM-LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL  317 (374)
T ss_pred             HHHHHHHHHHHHHHcCCccc-cchHHHHHHHH-HcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence            34899999999999999754 44445666665 4543 33322222211111           12344445567777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296          137 AHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       137 ~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                       .+++++|++++++++++.|...+.
T Consensus       318 -~~d~~ka~~a~e~~~~l~~~~W~l  341 (374)
T PF13281_consen  318 -AGDYEKAIQAAEKAFKLKPPAWEL  341 (374)
T ss_pred             -cCCHHHHHHHHHHHhhcCCcchhH
Confidence             899999999999999999987653

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.82  E-value=0.13  Score=39.80  Aligned_cols=61  Identities=18%  Similarity=-0.003  Sum_probs=56.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ..++.+.++.++...-.+.|+.+++...-+++++. .+++.+|+.+|+.+....|..++.-+
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kA   82 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKA   82 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHH
Confidence            57799999999999999999999999999999999 99999999999999999998886543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.77  E-value=0.029  Score=45.33  Aligned_cols=62  Identities=18%  Similarity=0.088  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296           74 TDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        74 A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~  136 (167)
                      |+.+|++|+.+.|.+-..++.+|.+.. ..++.=.|+-+|-|++....-.+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            788999999999999999999998876 68999999999999997766668888888766554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.58  E-value=0.018  Score=51.18  Aligned_cols=87  Identities=15%  Similarity=0.029  Sum_probs=70.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ++|.+.+++-.|+.-+.+||+++|....+++..|.+.. ..+.+.+|...|++...+.|+++.+...+..+-..      
T Consensus        46 ~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~------  118 (476)
T KOG0376|consen   46 LAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI------  118 (476)
T ss_pred             hhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH------
Confidence            67788899999999999999999999999998887765 78999999999999999999999998777665443      


Q ss_pred             HHHHHHHHHHHhCC
Q 046296          143 RAESYFDQAVKSAP  156 (167)
Q Consensus       143 eA~~~~e~Al~l~P  156 (167)
                      -.+.-|++++...+
T Consensus       119 vs~~~fe~ai~~~~  132 (476)
T KOG0376|consen  119 VSEEKFEKAILTPE  132 (476)
T ss_pred             HHHHhhhhcccCCc
Confidence            22333555555444

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.54  E-value=0.12  Score=46.53  Aligned_cols=96  Identities=16%  Similarity=0.017  Sum_probs=76.6

Q ss_pred             ChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHHcC
Q 046296           70 GSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN---PGD----GNILSLYADLIWQAHK  139 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~---P~~----~~al~~lA~~l~~~~g  139 (167)
                      ++.+++++++..+...|.+   +..+..++.+|+....+++.|..++++|..+.   |+.    .++...++.++.....
T Consensus        24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~  103 (629)
T KOG2300|consen   24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQ  103 (629)
T ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcC
Confidence            6889999999999988875   34566678887778899999999999998775   443    3556678888877445


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          140 DASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      .+..|...+++||++..+.|+..-++
T Consensus       104 s~~~~KalLrkaielsq~~p~wsckl  129 (629)
T KOG2300|consen  104 SFPPAKALLRKAIELSQSVPYWSCKL  129 (629)
T ss_pred             CCchHHHHHHHHHHHhcCCchhhHHH
Confidence            88899999999999999888655444

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.16  Score=44.67  Aligned_cols=92  Identities=13%  Similarity=0.161  Sum_probs=72.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD---ASRA  144 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g--d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~---~~eA  144 (167)
                      -+++-+.+.+.+|+.+|+...+|+-...+|. ...  ++..-++++++++++||.|..+|...=.+.-..+..   ..+=
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~-~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQ-KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence            4667788899999999999999999998886 332  378999999999999999998887654444432233   5677


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q 046296          145 ESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~l  162 (167)
                      +++..++|.-++.|-.++
T Consensus       169 l~ftt~~I~~nfSNYsaW  186 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNYSAW  186 (421)
T ss_pred             HHHHHHHHhccchhhhHH
Confidence            889999999998886655

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.46  E-value=0.069  Score=43.11  Aligned_cols=56  Identities=23%  Similarity=0.118  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          109 AEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       109 A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      |+.+|.+|+.+.|.+...++.+|.+... .++.-.|+-+|-+++...-..+.+..|+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL   56 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENL   56 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            7889999999999999999999999999 9999999999999987654456665554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.41  E-value=0.22  Score=43.08  Aligned_cols=79  Identities=24%  Similarity=0.253  Sum_probs=62.4

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHH
Q 046296           80 KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------------NP------------GD---GNILSLY  130 (167)
Q Consensus        80 kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------------~P------------~~---~~al~~l  130 (167)
                      ..|+.+|-+...+..++.++. .+++.+.|.++++|||-.              ++            .|   ..+++.+
T Consensus        31 ~ll~~~PyHidtLlqls~v~~-~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~  109 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYR-QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY  109 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence            445678999999999999987 899999999999998632              11            12   2344556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Q 046296          131 ADLIWQAHKDASRAESYFDQAVKSAPD-DWL  160 (167)
Q Consensus       131 A~~l~~~~g~~~eA~~~~e~Al~l~P~-~~~  160 (167)
                      ...+.+ +|-+..|.++.+-.+.++|. ||.
T Consensus       110 i~~L~~-RG~~rTAlE~~KlLlsLdp~~DP~  139 (360)
T PF04910_consen  110 IQSLGR-RGCWRTALEWCKLLLSLDPDEDPL  139 (360)
T ss_pred             HHHHHh-cCcHHHHHHHHHHHHhcCCCCCcc
Confidence            667777 99999999999999999998 774

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.40  E-value=0.35  Score=39.54  Aligned_cols=83  Identities=18%  Similarity=0.134  Sum_probs=50.8

Q ss_pred             ChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---H
Q 046296           70 GSSSTDAYNEKMIEANPGN-ALLLGNYARFLKEVRG--------DFAKAEELCGRAILANPGDGNILSLYADLIWQ---A  137 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n-~~~l~~lA~~l~~~~g--------d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---~  137 (167)
                      +..+|..+|++|.+..-.. ..+.+.++.++.  .+        +..+|+.+|.+|-...  ++.+..+++.+|..   +
T Consensus       128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv  203 (292)
T COG0790         128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV  203 (292)
T ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence            6777777777777764333 233555555543  22        2346777777776654  66666777766644   1


Q ss_pred             cCCHHHHHHHHHHHHHhCC
Q 046296          138 HKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       138 ~g~~~eA~~~~e~Al~l~P  156 (167)
                      ..++.+|..+|++|.+...
T Consensus       204 ~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         204 PRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             CcCHHHHHHHHHHHHHCCC
Confidence            2367777777777777655

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=95.38  E-value=0.055  Score=28.97  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=20.0

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARF   98 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~   98 (167)
                      ++++|...|+++++..|.++.+|..++.+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            45667777777777777777777766654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.38  E-value=0.057  Score=47.17  Aligned_cols=90  Identities=21%  Similarity=0.201  Sum_probs=71.8

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPG----N------ALLLGNYARFLKEVRGDFAKAEELCGRAILAN------PGDGNIL  127 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~----n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~------P~~~~al  127 (167)
                      +|-+..|+++|.-+..+|+++-.+    +      ..+++.++..|. ..|.+-.|.++++.|.++.      |-.+..+
T Consensus       171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~  249 (518)
T KOG1941|consen  171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQARCL  249 (518)
T ss_pred             HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            455668999999999999987433    2      345667777776 7899999999999998774      3445666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296          128 SLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       128 ~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      .-+|.+|.. .++.+.|..-|++|....
T Consensus       250 ~~~aDIyR~-~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  250 LCFADIYRS-RGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHh-cccHhHHHHHHHHHHHHH
Confidence            678999999 999999999999998763

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.33  E-value=0.25  Score=44.27  Aligned_cols=48  Identities=15%  Similarity=0.187  Sum_probs=43.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA  151 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A  151 (167)
                      .+|+|.++.-+..-..+++| ++.++..+|.+++. ..+|+||..++...
T Consensus       474 sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  474 SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQKL  521 (549)
T ss_pred             hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHhC
Confidence            56899999999999999999 99999999999999 99999999988754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.27  E-value=0.23  Score=45.21  Aligned_cols=83  Identities=14%  Similarity=0.010  Sum_probs=64.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPGDGNILSLYADLIWQ---AHKDASRA  144 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~--gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---~~g~~~eA  144 (167)
                      +...|+.+|.++-+...  +.+.+.++.++....  .++.+|.++|.+|.+.  .+..+.+.++.++..   +.-+..+|
T Consensus       308 d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            78899999999988755  555556676654222  4678999999999764  788888899988875   23488899


Q ss_pred             HHHHHHHHHhCC
Q 046296          145 ESYFDQAVKSAP  156 (167)
Q Consensus       145 ~~~~e~Al~l~P  156 (167)
                      ..+|++|.+..+
T Consensus       384 ~~~~k~aA~~g~  395 (552)
T KOG1550|consen  384 FAYYKKAAEKGN  395 (552)
T ss_pred             HHHHHHHHHccC
Confidence            999999999873

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.26  E-value=0.014  Score=49.85  Aligned_cols=65  Identities=11%  Similarity=0.024  Sum_probs=54.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      +-+.+-...|-++++.+|.|.+.|..-+.+-+....+++.+...|.++|+.||++|.+|..+-.+
T Consensus       121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence            45667778899999999999999987454444468899999999999999999999999876543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.04  E-value=0.66  Score=38.31  Aligned_cols=95  Identities=12%  Similarity=-0.024  Sum_probs=65.4

Q ss_pred             hcCCChHHHHHHHHHHHHhC-CCCHHH-------HHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CC------
Q 046296           66 NNNHGSSSTDAYNEKMIEAN-PGNALL-------LGNYARFLKEVRG-DFAKAEELCGRAILA----NP---GD------  123 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~-P~n~~~-------l~~lA~~l~~~~g-d~e~A~~~~~rAl~l----~P---~~------  123 (167)
                      -++++++.|..+|.|+-... ..+|..       +++.+.-+. ..+ +++.|..++++|+++    .+   ..      
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35689999999999987765 444443       445555554 577 999999999999888    22   21      


Q ss_pred             -HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHH
Q 046296          124 -GNILSLYADLIWQAHKDAS---RAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       124 -~~al~~lA~~l~~~~g~~~---eA~~~~e~Al~l~P~~~~~l  162 (167)
                       ..++..++.++.. .+.++   +|+.+++.+-...|+.+.+.
T Consensus        83 r~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence             3455667777777 65544   67777777777777766443

It is also involved in sporulation [].

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=0.12  Score=42.76  Aligned_cols=53  Identities=19%  Similarity=0.095  Sum_probs=41.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          102 VRGDFAKAEELCGRAILANPGDGN------ILSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~------al~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      +..+.++|+.++++||++-.+-..      .+..+|.+|-....++++|+.+|++|-..
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            467899999999999998654333      33467887766458999999999999765

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.96  E-value=0.22  Score=43.11  Aligned_cols=94  Identities=7%  Similarity=0.012  Sum_probs=71.9

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPG-----DGNILSLYADLIWQA  137 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~-----~~~al~~lA~~l~~~  137 (167)
                      ...++|-+.-|.++.+-.+.+||. ||.....+-.++..+.++++--+..++........     -|...+..|.+++. 
T Consensus       112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~-  190 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR-  190 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-
Confidence            344678899999999999999999 88877666666666778888777777776552221     23566777888888 


Q ss_pred             cCCH---------------HHHHHHHHHHHHhCCCC
Q 046296          138 HKDA---------------SRAESYFDQAVKSAPDD  158 (167)
Q Consensus       138 ~g~~---------------~eA~~~~e~Al~l~P~~  158 (167)
                      .++.               ++|...+++||..-|.-
T Consensus       191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             hcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            7776               89999999999987754

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.83  E-value=0.16  Score=38.48  Aligned_cols=64  Identities=14%  Similarity=0.113  Sum_probs=52.0

Q ss_pred             CChHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIE-ANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        69 g~~d~A~~~~~kAL~-l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      .+..+.+.+++..++ -.|. ..+.++.+|.-++ +.++|++++.+++..++.+|+|.++....-.+
T Consensus        49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i  114 (149)
T KOG3364|consen   49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALELKETI  114 (149)
T ss_pred             HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            567789999999997 5554 3566777777776 79999999999999999999999987655433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.83  E-value=0.47  Score=39.34  Aligned_cols=93  Identities=10%  Similarity=-0.030  Sum_probs=67.7

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCC-C---------------------------------HHHHHHHHHHHHHHc------C
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPG-N---------------------------------ALLLGNYARFLKEVR------G  104 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~-n---------------------------------~~~l~~lA~~l~~~~------g  104 (167)
                      .-.+++..+|+..+++.++..+. .                                 +.++..+|.+.. ..      .
T Consensus       194 lw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~-~~~~~~~~~  272 (352)
T PF02259_consen  194 LWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD-ELYSKLSSE  272 (352)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH-hhccccccc
Confidence            33557788999999888882111 0                                 234455565554 45      7


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---------------C-HHHHHHHHHHHHHhCCCC
Q 046296          105 DFAKAEELCGRAILANPGDGNILSLYADLIWQAHK---------------D-ASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       105 d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g---------------~-~~eA~~~~e~Al~l~P~~  158 (167)
                      +.++++..|++|+.++|+...+++.+|..+.....               + ...|+..|-+++...|..
T Consensus       273 ~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  273 SSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             cHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence            88999999999999999999999999987765211               1 125999999999999884

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.82  E-value=0.12  Score=29.93  Aligned_cols=31  Identities=13%  Similarity=-0.003  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 046296          126 ILSLYADLIWQAHKDASRAESY--FDQAVKSAPD  157 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~--~e~Al~l~P~  157 (167)
                      .++.+|..+.. ++++++|+.+  |+-+..++|.
T Consensus         3 ~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccc
Confidence            34455555555 6666666666  3355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=94.78  E-value=0.11  Score=27.77  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=23.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 046296          104 GDFAKAEELCGRAILANPGDGNILSLYADLI  134 (167)
Q Consensus       104 gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l  134 (167)
                      +++++|...|++++...|.++.+|..++.+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            3567788888888888888888887776543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.74  E-value=0.0049  Score=52.88  Aligned_cols=57  Identities=28%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      ..|.+++|+++|.+||+++|..+..+...+.++++ +++...|+.-+..|+.++|+..
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccc
Confidence            47889999999999999999999999999999999 9999999999999999999864

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.69  E-value=0.45  Score=43.53  Aligned_cols=93  Identities=16%  Similarity=0.042  Sum_probs=79.6

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      .+.++++.....|++++---....++|..|+..+. ..++..-|...+.++.++. |..+.++...|.+--. .++++.|
T Consensus       308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~-~~n~~~A  385 (577)
T KOG1258|consen  308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES-NGNFDDA  385 (577)
T ss_pred             hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh-hccHHHH
Confidence            45689999999999999999999999999999886 7899999998888888775 6777777777777666 8999999


Q ss_pred             HHHHHHHHHhCCCCHH
Q 046296          145 ESYFDQAVKSAPDDWL  160 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~  160 (167)
                      ..++++...--|+...
T Consensus       386 ~~~lq~i~~e~pg~v~  401 (577)
T KOG1258|consen  386 KVILQRIESEYPGLVE  401 (577)
T ss_pred             HHHHHHHHhhCCchhh
Confidence            9999999988787654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.68  E-value=1.1  Score=33.44  Aligned_cols=85  Identities=15%  Similarity=0.076  Sum_probs=60.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHH-
Q 046296           68 NHGSSSTDAYNEKMIEANPGN------------ALLLGNYARFLKEVRGDFAKAEELCGRAI-------LANPGDGNIL-  127 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n------------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl-------~l~P~~~~al-  127 (167)
                      .+-+++|...+++|++....-            +..+..|+..+. ..++|++++...++||       +++.+....| 
T Consensus        22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            367999999999999885442            345556666665 6899988877776666       4566655444 


Q ss_pred             ---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          128 ---SLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       128 ---~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                         ++.+..+.. .|+.++|+..|+.+.+.
T Consensus       101 aaVfsra~Al~~-~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  101 AAVFSRAVALEG-LGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence               467778888 99999999999998763

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.56  E-value=0.32  Score=40.81  Aligned_cols=92  Identities=15%  Similarity=0.127  Sum_probs=79.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFA-KAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e-~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      .++.+-+.++.++++-+|+|..+|...-.++. ..+++. .-++.+++.|..+.+|..+|...-+++.. .+.++.-+++
T Consensus        92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive-~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~-F~~~~~EL~y  169 (318)
T KOG0530|consen   92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVE-LLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRF-FKDYEDELAY  169 (318)
T ss_pred             HHHHHHHHHHHHHHHhCccchhHHHHHHHHHH-HhcCcccchHHHHHHHHhccccchhhhHHHHHHHHH-HhhHHHHHHH
Confidence            45778889999999999999999987766664 778887 88899999999999999999999999888 8889999999


Q ss_pred             HHHHHHhCCCCHHHH
Q 046296          148 FDQAVKSAPDDWLNL  162 (167)
Q Consensus       148 ~e~Al~l~P~~~~~l  162 (167)
                      ..+.|+.+-.|..++
T Consensus       170 ~~~Lle~Di~NNSAW  184 (318)
T KOG0530|consen  170 ADELLEEDIRNNSAW  184 (318)
T ss_pred             HHHHHHHhhhccchh
Confidence            999999887665554

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.50  E-value=0.16  Score=42.29  Aligned_cols=60  Identities=18%  Similarity=0.028  Sum_probs=55.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ...+++.|..+.++.+.++|.++.-+.--|.+|.+ .+.+.-|++-++..++.-|+++.+.
T Consensus       193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHH
Confidence            67899999999999999999999999999999999 9999999999999999999988653

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.45  E-value=0.25  Score=41.22  Aligned_cols=70  Identities=14%  Similarity=0.066  Sum_probs=61.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLI  134 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l  134 (167)
                      .|....+++.|..+-++.|.++|++|.-+..-|.++. +.+.+.-|++-++..++.-|+++.+......+.
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            5667788999999999999999999999999898886 899999999999999999999998876655443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.41  E-value=0.056  Score=28.66  Aligned_cols=24  Identities=17%  Similarity=0.145  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296          125 NILSLYADLIWQAHKDASRAESYFD  149 (167)
Q Consensus       125 ~al~~lA~~l~~~~g~~~eA~~~~e  149 (167)
                      .++..+|.+++. +|++++|+..++
T Consensus         2 ~a~~~la~~~~~-~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLA-QGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHh
Confidence            355667777777 777777777665

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.36  E-value=0.18  Score=45.57  Aligned_cols=72  Identities=10%  Similarity=-0.051  Sum_probs=61.5

Q ss_pred             hhhcCCChHHHHHHHHHHHH-h-----------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIE-A-----------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN  125 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~-l-----------------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~  125 (167)
                      ++++.+.+..+..+|++||+ .                 ....-++++|.+..+. ..++.-.|.++|.+|+..-..+|.
T Consensus       292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPr  370 (696)
T KOG2471|consen  292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPR  370 (696)
T ss_pred             EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcH
Confidence            56777899999999999996 1                 1223577889997765 899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 046296          126 ILSLYADLIWQ  136 (167)
Q Consensus       126 al~~lA~~l~~  136 (167)
                      .|..+|.+++.
T Consensus       371 lWLRlAEcCim  381 (696)
T KOG2471|consen  371 LWLRLAECCIM  381 (696)
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.29  E-value=0.051  Score=50.00  Aligned_cols=86  Identities=12%  Similarity=0.035  Sum_probs=37.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES  146 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~--~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~  146 (167)
                      |+.-+|..++..++-..|...  .++..+|.+|. +.|...+|--++..|+...|.-..-++.++.++.+ .+++.....
T Consensus       227 G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~-RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am-l~~~N~S~~  304 (886)
T KOG4507|consen  227 GEPYQAVECAMRALHFSSRHNKDIALLSLATVLH-RAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM-LGEYNHSVL  304 (886)
T ss_pred             CChhhhhHHHHHHhhhCCcccccchhhhHHHHHH-HcccccchhheeehhccCCccccccceeHHHHHHH-Hhhhhhhhh
Confidence            444444444444444433322  23333444443 34444444444444444444333334444444444 444444444


Q ss_pred             HHHHHHHhCC
Q 046296          147 YFDQAVKSAP  156 (167)
Q Consensus       147 ~~e~Al~l~P  156 (167)
                      .|..|.+..|
T Consensus       305 ~ydha~k~~p  314 (886)
T KOG4507|consen  305 CYDHALQARP  314 (886)
T ss_pred             hhhhhhccCc
Confidence            5555544444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.21  E-value=0.36  Score=46.25  Aligned_cols=88  Identities=18%  Similarity=0.251  Sum_probs=66.1

Q ss_pred             hhcCCChHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------
Q 046296           65 SNNNHGSSSTDAYNEKM----------IEANPG----------NALLLGNYARFLKEVRGDFAKAEELCGRAI-------  117 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kA----------L~l~P~----------n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl-------  117 (167)
                      ...+.+.+.|+.+|+|+          |.-+|.          ++..|..++.++. ..|+++.|+.+|+.|-       
T Consensus       868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE-S~GemdaAl~~Y~~A~D~fs~Vr  946 (1416)
T KOG3617|consen  868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE-SVGEMDAALSFYSSAKDYFSMVR  946 (1416)
T ss_pred             HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh-cccchHHHHHHHHHhhhhhhhee
Confidence            34557788888888864          334443          4556677788774 8999999999998753       


Q ss_pred             --------------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          118 --------------LANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       118 --------------~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                                    .....|-.+.+.+|..|-. .+++.+|+..|.+|-..
T Consensus       947 I~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  947 IKCIQGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             eEeeccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence                          3345677888899999988 99999999998887543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.18  E-value=0.84  Score=37.25  Aligned_cols=84  Identities=18%  Similarity=0.124  Sum_probs=66.8

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-------
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK-------  139 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~---~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g-------  139 (167)
                      +..+|...|+++....  ++.+.++++.++..   ...++.+|..+|++|.+...  ...++.++ +++. .+       
T Consensus       170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~-~g~g~~~~~  243 (292)
T COG0790         170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL-NGEGVKKAA  243 (292)
T ss_pred             HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh-cCCCchhhh
Confidence            4468999999998876  78888888877642   13489999999999999877  88888888 5555 45       


Q ss_pred             --------CHHHHHHHHHHHHHhCCCCH
Q 046296          140 --------DASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       140 --------~~~eA~~~~e~Al~l~P~~~  159 (167)
                              +...|..++.++....+...
T Consensus       244 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         244 FLTAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             hcccccCCCHHHHHHHHHHHHHcCChhH
Confidence                    88899999999988766543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.15  E-value=0.31  Score=44.31  Aligned_cols=83  Identities=22%  Similarity=0.182  Sum_probs=63.9

Q ss_pred             CCChHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHc----C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIE-------ANPGNALLLGNYARFLKEVR----G-DFAKAEELCGRAILANPGDGNILSLYADLIW  135 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~-------l~P~n~~~l~~lA~~l~~~~----g-d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~  135 (167)
                      ..++++|+.+|+++.+       ..  ++.+.+.++.++. ..    . +++.|+.+|.+|.+.  .++.+.+.+|.++.
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~-~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~  336 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYL-QGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYE  336 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHh-cCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence            4689999999999988       33  5667788888775 32    2 789999999999876  45556678888877


Q ss_pred             HHc--CCHHHHHHHHHHHHHhC
Q 046296          136 QAH--KDASRAESYFDQAVKSA  155 (167)
Q Consensus       136 ~~~--g~~~eA~~~~e~Al~l~  155 (167)
                      .-.  .++.+|..+|..|.+..
T Consensus       337 ~g~~~~d~~~A~~yy~~Aa~~G  358 (552)
T KOG1550|consen  337 TGTKERDYRRAFEYYSLAAKAG  358 (552)
T ss_pred             cCCccccHHHHHHHHHHHHHcC
Confidence            612  35679999999998764

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.13  E-value=0.33  Score=44.49  Aligned_cols=93  Identities=16%  Similarity=-0.116  Sum_probs=70.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNY--ARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~l--A~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      .-.-++..+..-+.++|.++.++...  ...+. ..++...+...++.++..||.+..+..+|+.++......+.-+...
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          46 LQALAIYALLLGIAINDVNPELLLAAFLSILLA-PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             chhHHHHHHHccCccCCCCHHHHHHHHHHhhcc-ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            34446777777788999999886543  43333 5677888999999999999999999999999888733444455555


Q ss_pred             HHHHHHhCCCCHHHHH
Q 046296          148 FDQAVKSAPDDWLNLI  163 (167)
Q Consensus       148 ~e~Al~l~P~~~~~l~  163 (167)
                      .+.+.+..|++..++.
T Consensus       125 ~~~a~~~~~~~~~~~~  140 (620)
T COG3914         125 SEIAEWLSPDNAEFLG  140 (620)
T ss_pred             HHHHHhcCcchHHHHh
Confidence            5559999999987663

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.13  E-value=0.43  Score=44.40  Aligned_cols=88  Identities=7%  Similarity=-0.066  Sum_probs=65.6

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH  138 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~  138 (167)
                      .++..+|..+++.|+..++.-|.+.      ....+++.++. ...++++|.++++.|-+.+|.++-.....-.+... .
T Consensus       364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL-~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E  441 (872)
T KOG4814|consen  364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL-KLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-E  441 (872)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-h
Confidence            3455788889999999988877653      33445665554 67889999999999999999888776666555555 6


Q ss_pred             CCHHHHHHHHHHHHHh
Q 046296          139 KDASRAESYFDQAVKS  154 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l  154 (167)
                      +.-++|++.+.....+
T Consensus       442 ~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  442 DKSEEALTCLQKIKSS  457 (872)
T ss_pred             cchHHHHHHHHHHHhh
Confidence            8888888888776554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.13  E-value=0.97  Score=40.04  Aligned_cols=53  Identities=17%  Similarity=0.136  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          105 DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       105 d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      |...|...-.+++++.|+...+-..-+.+|+. .++..++-.+++.+.+..|+-
T Consensus       244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~ePHP  296 (531)
T COG3898         244 DPASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEPHP  296 (531)
T ss_pred             ChHHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCCCh
Confidence            34445555555666777777776677777777 888888888888888887753

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.08  E-value=0.22  Score=28.78  Aligned_cols=34  Identities=12%  Similarity=0.038  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEEL--CGRAILANPGD  123 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~--~~rAl~l~P~~  123 (167)
                      ++.+..+|..++ .++++++|+..  |+-+..++|.|
T Consensus         1 ~e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence            356778888887 79999999999  55888888865

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.92  E-value=0.5  Score=39.67  Aligned_cols=80  Identities=18%  Similarity=0.013  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQ  150 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~  150 (167)
                      +..=+...+++++.  ....++..++..+. ..++++.+++.+++.+.++|.+-..|..+-.++.. .|+...|+..|++
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~  212 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQ  212 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHH
Confidence            44444444444432  23445556666664 67899999999999999999999999999889998 9999999999998


Q ss_pred             HHHh
Q 046296          151 AVKS  154 (167)
Q Consensus       151 Al~l  154 (167)
                      .-++
T Consensus       213 l~~~  216 (280)
T COG3629         213 LKKT  216 (280)
T ss_pred             HHHH
Confidence            8763

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.76  E-value=0.54  Score=36.54  Aligned_cols=91  Identities=12%  Similarity=-0.013  Sum_probs=62.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PGDGNIL----SLYADL  133 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~~~~al----~~lA~~  133 (167)
                      ..|.+.|++++|+++|.++.+.....   ...++++..+.. ..+++.....++.+|-.+-  +.+....    ..-|..
T Consensus        44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~  122 (177)
T PF10602_consen   44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA  122 (177)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            46778899999999999987765443   233444555444 5789999998888886553  3333333    234555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Q 046296          134 IWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       134 l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      ++. +++|.+|.+.|-.++.-.
T Consensus       123 ~l~-~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  123 NLA-QRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHH-hchHHHHHHHHHccCcCC
Confidence            666 899999999888776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.70  E-value=0.85  Score=40.40  Aligned_cols=94  Identities=16%  Similarity=0.079  Sum_probs=60.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKA-EELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A-~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      .++++.++..++-.+++.+.+.+|. |.++..|-.  . ..++.... ++-.++...+.|+|.+.....+..-+. .++|
T Consensus       271 ralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~--a-r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld-a~e~  345 (531)
T COG3898         271 RALFRDGNLRKGSKILETAWKAEPH-PDIALLYVR--A-RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD-AGEF  345 (531)
T ss_pred             HHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHH--h-cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh-ccch
Confidence            3566777777777777777777775 443333221  1 34443222 233444556678888888888887777 8888


Q ss_pred             HHHHHHHHHHHHhCCCCHHH
Q 046296          142 SRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~  161 (167)
                      ..|..--+.++...|....+
T Consensus       346 ~~ARa~Aeaa~r~~pres~~  365 (531)
T COG3898         346 SAARAKAEAAAREAPRESAY  365 (531)
T ss_pred             HHHHHHHHHHhhhCchhhHH
Confidence            88888888888888865543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.49  E-value=0.52  Score=32.54  Aligned_cols=55  Identities=16%  Similarity=0.064  Sum_probs=42.2

Q ss_pred             hcCCChHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296           66 NNNHGSSSTDAYNEKMIEANPG----N-----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP  121 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~----n-----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P  121 (167)
                      .+.+++..|+..+.+.+.....    .     ..++.++|.+.. ..|++++|+..+++||++..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Confidence            3457899997777777665332    2     456778888776 78999999999999998864

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.43  E-value=0.51  Score=45.71  Aligned_cols=95  Identities=14%  Similarity=-0.060  Sum_probs=75.3

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVR---G---DFAKAEELCGRAILANPGDGNILSLYADLI  134 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~---g---d~e~A~~~~~rAl~l~P~~~~al~~lA~~l  134 (167)
                      ++.....|++|+..|++.-..-|.-   .++.+..+.++.++.   +   .+++|+..|++.. -.|.-|--+.-.|.+|
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  562 (932)
T PRK13184        484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY  562 (932)
T ss_pred             HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence            5566678999999999999999874   567777777765322   2   4777887777764 3566676677788999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296          135 WQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       135 ~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      .. +++|+|-++.|+-|++.-|+.|.
T Consensus       563 ~~-~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        563 QR-LGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             HH-hhhHHHHHHHHHHHHHhcCCCCc
Confidence            99 99999999999999999998874

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=93.43  E-value=0.071  Score=46.02  Aligned_cols=98  Identities=12%  Similarity=-0.091  Sum_probs=76.6

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCC---C----------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANP---G----------------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG  124 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P---~----------------n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~  124 (167)
                      -.+++++++.|..-|.++++.-.   .                -.....+++.+.. ..+.+..|+.....+++.++...
T Consensus       231 ~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~t  309 (372)
T KOG0546|consen  231 KEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGL-KVKGRGGARFRTNEALRDERSKT  309 (372)
T ss_pred             hhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcc-cccCCCcceeccccccccChhhC
Confidence            45567788888888888776411   1                0122344555543 57788889988888999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          125 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      .+++..+..+.. ..++++|++.++.+....|++..+..
T Consensus       310 ka~~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~  347 (372)
T KOG0546|consen  310 KAHYRRGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEE  347 (372)
T ss_pred             cHHHHHHhHHHh-hhchhhhHHHHHHhhccCcchHHHHH
Confidence            999999999998 99999999999999999999987653

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.37  E-value=1.2  Score=41.09  Aligned_cols=90  Identities=14%  Similarity=0.133  Sum_probs=67.4

Q ss_pred             hcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHHcC
Q 046296           66 NNNHGSSSTDAYNEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRA-----ILANPGDGNILSLYADLIWQAHK  139 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rA-----l~l~P~~~~al~~lA~~l~~~~g  139 (167)
                      .+++-+.-|.++++-.+.++|. ||.+...+-.++.....+|+=-+..++..     |..-|+-+..+ .+|.++.. +.
T Consensus       353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-AlA~f~l~-~~  430 (665)
T KOG2422|consen  353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-ALARFFLR-KN  430 (665)
T ss_pred             HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-HHHHHHHh-cC
Confidence            4568899999999999999999 99988877777666677787777766665     44456666543 45556665 33


Q ss_pred             C---HHHHHHHHHHHHHhCCC
Q 046296          140 D---ASRAESYFDQAVKSAPD  157 (167)
Q Consensus       140 ~---~~eA~~~~e~Al~l~P~  157 (167)
                      .   .+.|...+.+|++..|.
T Consensus       431 ~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  431 EEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             ChhhHHHHHHHHHHHHHhCcH
Confidence            3   56799999999999884

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=93.30  E-value=0.67  Score=35.97  Aligned_cols=54  Identities=22%  Similarity=0.263  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296          106 FAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       106 ~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      .+..++..++.++..| ++.++.+++.++.. .|+.++|.+..+++..+-|.+...
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~~~~  180 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPADEFA  180 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcHHHH
Confidence            4566677788888888 67788899999999 999999999999999999965443

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.09  E-value=0.98  Score=34.61  Aligned_cols=60  Identities=12%  Similarity=0.011  Sum_probs=54.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ...++++++.++...-.+.|+.+++...-++++.. .+++.+|+.+|+....-.|..|+..
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~k   81 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGK   81 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHH
Confidence            47889999999999999999999999999999999 9999999999999999888877543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.82  E-value=1.4  Score=37.30  Aligned_cols=48  Identities=23%  Similarity=0.306  Sum_probs=44.1

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQ  150 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~  150 (167)
                      ..+++.+|...|..++..+|.+..+...|+.++.. .|+.++|...+..
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~  193 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAA  193 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHh
Confidence            58999999999999999999999999999999999 9999888776654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=92.59  E-value=1.4  Score=36.17  Aligned_cols=59  Identities=20%  Similarity=0.158  Sum_probs=51.6

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN  125 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~  125 (167)
                      .+.+.+++|+...+.-++.+|.+......|-.+|. ..|++++|..-++-+-++.|++..
T Consensus        12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455          12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccch
Confidence            45578999999999999999999988888888887 799999999999999999998753

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.55  E-value=1.3  Score=40.60  Aligned_cols=85  Identities=18%  Similarity=0.136  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHHcCC
Q 046296           71 SSSTDAYNEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--GDGNI----LSLYADLIWQAHKD  140 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P--~~~~a----l~~lA~~l~~~~g~  140 (167)
                      ...|+.+++-+++..+-.    +.+.+.||.+|.+...+++.|+.+++|++.+..  +..+.    ...++.++.+ .+.
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~  115 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNP  115 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCH
Confidence            456788888888532222    456778999998889999999999999988874  33322    3345666666 555


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 046296          141 ASRAESYFDQAVKSAPD  157 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~  157 (167)
                      .. |..+++++|+..-+
T Consensus       116 ~~-a~~~l~~~I~~~~~  131 (608)
T PF10345_consen  116 KA-ALKNLDKAIEDSET  131 (608)
T ss_pred             HH-HHHHHHHHHHHHhc
Confidence            55 99999999887444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=92.34  E-value=0.62  Score=44.73  Aligned_cols=62  Identities=24%  Similarity=0.360  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296           90 LLLGNYARFLKEVRGDFAKAEELCGRA----------ILANP----------GDGNILSLYADLIWQAHKDASRAESYFD  149 (167)
Q Consensus        90 ~~l~~lA~~l~~~~gd~e~A~~~~~rA----------l~l~P----------~~~~al~~lA~~l~~~~g~~~eA~~~~e  149 (167)
                      ..+++||..|. .++|.+.|+++|+|+          |.-+|          .++..|...|..+-. .|+.+.|+.+|.
T Consensus       859 ~Tyy~yA~~Le-ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES-~GemdaAl~~Y~  936 (1416)
T KOG3617|consen  859 NTYYNYAKYLE-ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES-VGEMDAALSFYS  936 (1416)
T ss_pred             hhHHHHHHHHH-hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc-ccchHHHHHHHH
Confidence            45778898885 799999999999985          33345          344555556666666 899999999998


Q ss_pred             HHHH
Q 046296          150 QAVK  153 (167)
Q Consensus       150 ~Al~  153 (167)
                      .|-.
T Consensus       937 ~A~D  940 (1416)
T KOG3617|consen  937 SAKD  940 (1416)
T ss_pred             Hhhh
Confidence            8743

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.08  E-value=1.6  Score=38.50  Aligned_cols=91  Identities=12%  Similarity=0.132  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKE-----------VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK  139 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~-----------~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g  139 (167)
                      .+.++..=.+.++.+|....+|+--=.++.+           ...-+++-+.+...+|+.+|++..+|+...+++.. ..
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p  123 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NP  123 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CC
Confidence            4567778888899999998888753333221           11235667788999999999999999999999987 54


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHH
Q 046296          140 --DASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       140 --~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                        ++..=+++.+++++++|.|...+
T Consensus       124 ~~~~~~EL~lcek~L~~D~RNfh~W  148 (421)
T KOG0529|consen  124 HSDWNTELQLCEKALKQDPRNFHAW  148 (421)
T ss_pred             CchHHHHHHHHHHHHhcCcccccch
Confidence              36788999999999999886544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.95  E-value=0.6  Score=39.01  Aligned_cols=65  Identities=12%  Similarity=0.055  Sum_probs=55.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILS  128 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~  128 (167)
                      +-+...+++-+++.....+|..+|.|..+++..|.... ..=+.++|.+-|.++|+++|.-+.+..
T Consensus       238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            44566688999999999999999999999999998775 566889999999999999997665543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=91.43  E-value=2.3  Score=39.01  Aligned_cols=83  Identities=13%  Similarity=0.071  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQ  150 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~  150 (167)
                      ...|...|.+|=+.--.--.++..-|.+-+..++|.+-|...|+--++.-++++..-..|...|.. .++-..|..+|++
T Consensus       382 lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~-lNdd~N~R~LFEr  460 (656)
T KOG1914|consen  382 LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH-LNDDNNARALFER  460 (656)
T ss_pred             HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hCcchhHHHHHHH
Confidence            445555565554332221123222232222246777777777777777777777777777777777 7777777778887


Q ss_pred             HHHh
Q 046296          151 AVKS  154 (167)
Q Consensus       151 Al~l  154 (167)
                      ++..
T Consensus       461 ~l~s  464 (656)
T KOG1914|consen  461 VLTS  464 (656)
T ss_pred             HHhc
Confidence            7776

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.30  E-value=0.41  Score=28.08  Aligned_cols=29  Identities=10%  Similarity=0.335  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          125 NILSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       125 ~al~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      +++..+|.+-+. ..+|++|++-|+++|++
T Consensus         2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLE-NENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence            467788888888 88999999999988876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=91.28  E-value=0.19  Score=43.41  Aligned_cols=19  Identities=47%  Similarity=0.826  Sum_probs=8.5

Q ss_pred             cccCCCCcccCCCCCCCCC
Q 046296           31 GLGNNGGKICGGRGGGDVG   49 (167)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~   49 (167)
                      |+.+|+|+-.||+|+|.|+
T Consensus       357 g~Rgg~Gg~~gGrGgGRGg  375 (465)
T KOG3973|consen  357 GSRGGSGGNWGGRGGGRGG  375 (465)
T ss_pred             CCCCCCCCCCCCCCCCCCC
Confidence            3333334444555554443

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=91.17  E-value=1.7  Score=31.88  Aligned_cols=74  Identities=11%  Similarity=0.087  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcC
Q 046296           71 SSSTDAYNEKMIEANPGNAL---------LLGNYARFLKEVRGDFAKAEELCGRAILAN--PGDGNILSLYADLIWQAHK  139 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~---------~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~~~~al~~lA~~l~~~~g  139 (167)
                      ...-...++++++.-.+++.         +|..+|       .-...+.+.|+......  -..+..+..+|.++.. .+
T Consensus        42 ~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya-------~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~  113 (126)
T PF08311_consen   42 QSGLLELLERCIRKFKDDERYKNDERYLKIWIKYA-------DLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RG  113 (126)
T ss_dssp             CHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHH-------TTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT
T ss_pred             hhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHH-------HHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cC
Confidence            33445667777766544332         222222       22337788888777654  5788999999999998 99


Q ss_pred             CHHHHHHHHHHHH
Q 046296          140 DASRAESYFDQAV  152 (167)
Q Consensus       140 ~~~eA~~~~e~Al  152 (167)
                      ++++|.++|+++|
T Consensus       114 ~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  114 NFKKADEIYQLGI  126 (126)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999999886

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.16  E-value=0.31  Score=25.69  Aligned_cols=26  Identities=35%  Similarity=0.249  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGR  115 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~r  115 (167)
                      |.+..+++.++. ..|++++|+..+++
T Consensus         1 ~~a~~~la~~~~-~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    1 PRARLALARALL-AQGDPDEAERLLRR   26 (26)
T ss_pred             CHHHHHHHHHHH-HcCCHHHHHHHHhC
Confidence            356778899887 89999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=90.76  E-value=1.1  Score=36.48  Aligned_cols=48  Identities=27%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIEA-----NPGNALL---LGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        71 ~d~A~~~~~kAL~l-----~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      .++|...|++|+++     .|.||.-   ..|++.|+++..++.++|+++.++|+.
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            35677777776653     6667653   346677777667777777777766654

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=90.58  E-value=1.9  Score=37.61  Aligned_cols=82  Identities=20%  Similarity=0.063  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CC----HH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---------------------GD----GN  125 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P---------------------~~----~~  125 (167)
                      ..+-++.-..||++||.-+.++..+|.   +..--+.+|++++++|++.-.                     .|    ..
T Consensus       200 p~~RI~~A~~ALeIN~eCA~AyvLLAE---EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y  276 (556)
T KOG3807|consen  200 PPARIKAAYQALEINNECATAYVLLAE---EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY  276 (556)
T ss_pred             cHHHHHHHHHHHhcCchhhhHHHhhhh---hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence            344466677899999998888877764   344557888888888886411                     11    12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          126 ILSLYADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      +...+|.+..+ +|+..||++.|+...+--|
T Consensus       277 IKRRLAMCARk-lGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  277 IKRRLAMCARK-LGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             HHHHHHHHHHH-hhhHHHHHHHHHHHhhhcc
Confidence            33467888887 9999999999999988777

>smart00101 14_3_3 14-3-3 homologues

Probab=90.52  E-value=1.3  Score=36.45  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIEA-----NPGNALL---LGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        71 ~d~A~~~~~kAL~l-----~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      .++|...|++|+++     .|.||.-   ..|++.|+++..++.++|.++.++|+.
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd  199 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  199 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45778888887763     4777754   356777777778888888877666654

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.51  E-value=3  Score=34.86  Aligned_cols=82  Identities=20%  Similarity=0.114  Sum_probs=52.9

Q ss_pred             CChHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEAN-----PGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLYADLIWQ  136 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~-----P~n~-~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~lA~~l~~  136 (167)
                      ..+.++..+|++|..+.     |+-+ .++-.-|.++  ..-++++|+.+|++++.+--.+      .+.+...+.+|.+
T Consensus        85 ~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l--env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr  162 (308)
T KOG1585|consen   85 SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL--ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR  162 (308)
T ss_pred             HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence            45667777888877763     3322 2233334443  3678999999999988764433      2444456777887


Q ss_pred             HcCCHHHHHHHHHHHHH
Q 046296          137 AHKDASRAESYFDQAVK  153 (167)
Q Consensus       137 ~~g~~~eA~~~~e~Al~  153 (167)
                       ..+|++|-..|.+-..
T Consensus       163 -l~kf~Eaa~a~lKe~~  178 (308)
T KOG1585|consen  163 -LEKFTEAATAFLKEGV  178 (308)
T ss_pred             -hHHhhHHHHHHHHhhh
Confidence             8888888777776543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.20  E-value=2.1  Score=33.23  Aligned_cols=64  Identities=19%  Similarity=0.096  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      ..++..+|.++. ..||+++|+++|.++.+.....   .+.+.++-.+.+. .+++....+++.+|-.+
T Consensus        36 r~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   36 RMALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence            357778999887 8999999999999988764332   3444455556666 89999999999999765

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.08  E-value=3.9  Score=32.83  Aligned_cols=54  Identities=22%  Similarity=0.119  Sum_probs=41.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296           95 YARFLKEVRGDFAKAEELCGRAILANPGDG----NILSLYADLIWQAHKDASRAESYFDQA  151 (167)
Q Consensus        95 lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~----~al~~lA~~l~~~~g~~~eA~~~~e~A  151 (167)
                      +|.... ..+++++|+..++.++.. |.|.    -+-.++|.+++. ++.+++|+..+...
T Consensus        95 lAk~~v-e~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~  152 (207)
T COG2976          95 LAKAEV-EANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQ-QKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHH-hhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcc
Confidence            444444 578999999999999864 4333    344578999999 99999999988654

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=89.94  E-value=2  Score=31.22  Aligned_cols=67  Identities=22%  Similarity=0.303  Sum_probs=47.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH---HcCCH-------HHHHHHHHHHHHhCCCCHHHH
Q 046296           96 ARFLKEVRGDFAKAEELCGRAILANPGDGN---ILSLYADLIWQ---AHKDA-------SRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus        96 A~~l~~~~gd~e~A~~~~~rAl~l~P~~~~---al~~lA~~l~~---~~g~~-------~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      |.-++ .+|+.-+|+++.+..+..++++..   .+..-|.+++.   +..+.       -.|++.|.+++.+.|+.+..+
T Consensus         3 A~~~~-~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    3 AKDYF-ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             HHHHH-HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            34454 699999999999999999998874   34444555544   12222       258899999999999886655


Q ss_pred             H
Q 046296          163 I  163 (167)
Q Consensus       163 ~  163 (167)
                      .
T Consensus        82 ~   82 (111)
T PF04781_consen   82 F   82 (111)
T ss_pred             H
Confidence            3

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.93  E-value=2.3  Score=35.70  Aligned_cols=55  Identities=13%  Similarity=-0.025  Sum_probs=47.9

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      .+...++++.++..+++.+..+|-+-..|..+-.++. ..++...|+..|++.-..
T Consensus       162 ~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         162 ALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence            3455678999999999999999999999998888876 899999999999988664

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.91  E-value=1.4  Score=36.29  Aligned_cols=57  Identities=19%  Similarity=0.184  Sum_probs=53.1

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      ....+.+|+...+.-|+.+|.+......|-.+|.- .|++++|...++-+-++.|++.
T Consensus        13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455          13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccc
Confidence            47889999999999999999999999999999988 9999999999999999999875

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.89  E-value=1.3  Score=41.34  Aligned_cols=63  Identities=11%  Similarity=0.031  Sum_probs=52.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           96 ARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus        96 A~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      |.-++ ...+|..++++|+..++--|.|      +....+++.+|.. ..+.++|.+++++|-+.+|.++.
T Consensus       361 A~~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l  429 (872)
T KOG4814|consen  361 AKKLF-KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPL  429 (872)
T ss_pred             hHHHH-HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHH
Confidence            44454 6889999999999999887755      4455678889998 99999999999999999998874

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=89.87  E-value=1.8  Score=39.11  Aligned_cols=79  Identities=20%  Similarity=0.208  Sum_probs=64.5

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296           76 AYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus        76 ~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      ..++.-|+-+|+|...|+.|-..+. .++.+++-.+.|++...--|--+.+|..+-.--+. ..+|..-+.+|-+.|...
T Consensus        29 lrLRerIkdNPtnI~S~fqLiq~~~-tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA-~~df~svE~lf~rCL~k~  106 (660)
T COG5107          29 LRLRERIKDNPTNILSYFQLIQYLE-TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA-RKDFRSVESLFGRCLKKS  106 (660)
T ss_pred             HHHHHHhhcCchhHHHHHHHHHHHh-hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhh-hhhHHHHHHHHHHHHhhh
Confidence            3678889999999999999998875 89999999999999998888877777765444444 578888888888888754


Q ss_pred             C
Q 046296          156 P  156 (167)
Q Consensus       156 P  156 (167)
                      -
T Consensus       107 l  107 (660)
T COG5107         107 L  107 (660)
T ss_pred             c
Confidence            3

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.87  E-value=1.9  Score=29.50  Aligned_cols=52  Identities=6%  Similarity=-0.014  Sum_probs=32.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSL---YADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~---lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      ...+.++|+..+++|++..++.+.-+..   +..++.+ .|+|.+++.+-.+-+.+
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLEI   72 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            4566777777777777777666544443   3445566 77777776665555444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.73  E-value=0.78  Score=31.00  Aligned_cols=18  Identities=28%  Similarity=0.300  Sum_probs=15.6

Q ss_pred             HcCCHHHHHHHHHHHHHh
Q 046296          102 VRGDFAKAEELCGRAILA  119 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l  119 (167)
                      ..+++++|+.+|..||+.
T Consensus        18 ~~gny~eA~~lY~~ale~   35 (75)
T cd02680          18 EKGNAEEAIELYTEAVEL   35 (75)
T ss_pred             HhhhHHHHHHHHHHHHHH
Confidence            678999999999999874

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.59  E-value=3.7  Score=37.71  Aligned_cols=88  Identities=11%  Similarity=0.115  Sum_probs=71.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      .+.+.+...|...|...|.---+|-.+|..-+ ..+..+++++.|+++|..-|.+...|..|-..+....++.+.-...|
T Consensus        59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f  137 (577)
T KOG1258|consen   59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLF  137 (577)
T ss_pred             hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            34567777888888888988888888888765 78999999999999999999999999888776666567888888888


Q ss_pred             HHHHHhCCC
Q 046296          149 DQAVKSAPD  157 (167)
Q Consensus       149 e~Al~l~P~  157 (167)
                      ++|+...-.
T Consensus       138 e~A~~~vG~  146 (577)
T KOG1258|consen  138 ERAKSYVGL  146 (577)
T ss_pred             HHHHHhccc
Confidence            888876543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.58  E-value=2.2  Score=29.24  Aligned_cols=52  Identities=6%  Similarity=-0.030  Sum_probs=39.7

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHh
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYA---RFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA---~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      .+++.++|+..++++|+.-++.+.-+..++   .++. ..|+|.+++++..+-+.+
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~-e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHM-EWGKYREMLAFALQQLEI   72 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999876555444   4454 678888888876665554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=89.44  E-value=2  Score=39.54  Aligned_cols=80  Identities=16%  Similarity=0.124  Sum_probs=60.9

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      .++..++.+....+.-+.-....+..++.-|.++. ..+..++|-++|++.+..+|+  +.++.+|.-+.. .|-...|.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~   94 (578)
T PRK15490         19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLH-DVNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQ   94 (578)
T ss_pred             HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhh-hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHH
Confidence            34456677777666665555556666677777776 578889999999999999999  566788888888 88888888


Q ss_pred             HHHH
Q 046296          146 SYFD  149 (167)
Q Consensus       146 ~~~e  149 (167)
                      ..++
T Consensus        95 ~~~~   98 (578)
T PRK15490         95 LILK   98 (578)
T ss_pred             HHHH
Confidence            8777

>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996

Probab=89.35  E-value=0.91  Score=27.31  Aligned_cols=32  Identities=44%  Similarity=0.533  Sum_probs=22.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296          112 LCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus       112 ~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      .|.+||..+|++...+..||..|.+ +|+.++|
T Consensus         4 all~AI~~~P~ddt~RLvYADWL~e-~gdp~ra   35 (42)
T TIGR02996         4 ALLRAILAHPDDDTPRLVYADWLDE-HGDPARA   35 (42)
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHH
Confidence            4566777777777777777777777 7777554

This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=89.06  E-value=2.4  Score=36.70  Aligned_cols=70  Identities=10%  Similarity=-0.057  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPG----DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus        90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      ..+-.-++.++ ...+|..|+.+|.+.|+..-.    ++..|.|.|.+.+. .++|..|+.-..+|++++|.+.-+
T Consensus        82 en~KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka  155 (390)
T KOG0551|consen   82 ENYKEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKA  155 (390)
T ss_pred             HHHHHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhh
Confidence            33444566676 688999999999999998644    34566788888888 999999999999999999988643

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.04  E-value=0.79  Score=39.06  Aligned_cols=55  Identities=18%  Similarity=0.064  Sum_probs=46.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296           96 ARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAV  152 (167)
Q Consensus        96 A~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al  152 (167)
                      +..+. ..+.+.+|++++++++.++|-+...+..+-.+|.. .|+--.|++.|++.-
T Consensus       286 a~~yl-e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyerya  340 (361)
T COG3947         286 ARAYL-EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHH-HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHHH
Confidence            44443 68999999999999999999999999888888888 899778877777653

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.71  E-value=1  Score=30.47  Aligned_cols=19  Identities=16%  Similarity=0.169  Sum_probs=15.8

Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 046296          101 EVRGDFAKAEELCGRAILA  119 (167)
Q Consensus       101 ~~~gd~e~A~~~~~rAl~l  119 (167)
                      ...+++++|+.+|..||+.
T Consensus        17 D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681          17 DQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHccCHHHHHHHHHHHHHH
Confidence            3789999999999998864

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.52  E-value=2.2  Score=36.49  Aligned_cols=31  Identities=13%  Similarity=0.029  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          128 SLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       128 ~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      ...+..+.+ .+.+.+|+++.+++++++|-+.
T Consensus       283 gkva~~yle-~g~~neAi~l~qr~ltldpL~e  313 (361)
T COG3947         283 GKVARAYLE-AGKPNEAIQLHQRALTLDPLSE  313 (361)
T ss_pred             HHHHHHHHH-cCChHHHHHHHHHHhhcChhhh
Confidence            344556666 8888888888888888888554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.40  E-value=3.9  Score=32.76  Aligned_cols=64  Identities=19%  Similarity=0.164  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG-NILSLYADLIW  135 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~--n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~-~al~~lA~~l~  135 (167)
                      +.+|...|++|++....  .    ..+++.+|.+.. ..|++++|+.+|.++|..--.+. ..+..+|.=++
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w  211 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQW  211 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence            55788888888876543  2    456666777665 89999999999999997533222 35555555443

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=88.36  E-value=1.1  Score=25.37  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=18.0

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARF   98 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~   98 (167)
                      ++++|..+|++.+...|+ +..|..+|.+
T Consensus         2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF   29 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE-VKNWIKYAKF   29 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence            456677777777777655 5666666653

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=87.85  E-value=3.6  Score=35.80  Aligned_cols=89  Identities=19%  Similarity=0.134  Sum_probs=61.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPGDGNILSLYADLIWQAHKDASRAES  146 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--~P~~~~al~~lA~~l~~~~g~~~eA~~  146 (167)
                      -++..-..+|.-...+.|. |.+-.|-+..+. +.--.+.++...+.+...  -.....++...+.++.+ .|+.+||..
T Consensus       310 tDW~~I~aLYdaL~~~apS-PvV~LNRAVAla-~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r-Lgr~~eAr~  386 (415)
T COG4941         310 TDWPAIDALYDALEQAAPS-PVVTLNRAVALA-MREGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR-LGRVEEARA  386 (415)
T ss_pred             CChHHHHHHHHHHHHhCCC-CeEeehHHHHHH-HhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH-hCChHHHHH
Confidence            3566666777776667766 444445566665 344466777777666543  12344555667888998 999999999


Q ss_pred             HHHHHHHhCCCCHH
Q 046296          147 YFDQAVKSAPDDWL  160 (167)
Q Consensus       147 ~~e~Al~l~P~~~~  160 (167)
                      .|++||.+.++...
T Consensus       387 aydrAi~La~~~ae  400 (415)
T COG4941         387 AYDRAIALARNAAE  400 (415)
T ss_pred             HHHHHHHhcCChHH
Confidence            99999999887764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.82  E-value=7  Score=37.67  Aligned_cols=86  Identities=19%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             cCCChHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPG--N-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG-----NILSLYAD  132 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~--n-------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~-----~al~~lA~  132 (167)
                      ++.++++|..+..++...-|.  .       +++..-.|.+.. .++++++|+++.+.++..-|.+.     .++...+.
T Consensus       427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            457889998888887765444  2       122223344544 68999999999999999888653     45556777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Q 046296          133 LIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       133 ~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      +..- +|++++|..+.+++.+.
T Consensus       506 a~~~-~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         506 AAHI-RGELTQALALMQQAEQM  526 (894)
T ss_pred             HHHH-hchHHHHHHHHHHHHHH
Confidence            7776 89999999999999887

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=87.24  E-value=1.5  Score=28.43  Aligned_cols=18  Identities=33%  Similarity=0.462  Sum_probs=14.2

Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 046296          101 EVRGDFAKAEELCGRAIL  118 (167)
Q Consensus       101 ~~~gd~e~A~~~~~rAl~  118 (167)
                      +..+++++|+.+|.+|+.
T Consensus        16 D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen   16 DEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHTTSHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            368888888888888775

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.77  E-value=7.1  Score=31.15  Aligned_cols=83  Identities=19%  Similarity=0.153  Sum_probs=50.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------
Q 046296           69 HGSSSTDAYNEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCGRAIL----------------------------  118 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~--~~l~~lA~~l~~~~gd~e~A~~~~~rAl~----------------------------  118 (167)
                      +..++|+..|...-+-.-.+.  .+....+.++. ..++-..|+.+|..+-.                            
T Consensus        72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a-~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d  150 (221)
T COG4649          72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLA-QKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD  150 (221)
T ss_pred             CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence            556666666665554443332  33344454443 55666666655554322                            


Q ss_pred             -----------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          119 -----------ANPGDGNILSLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       119 -----------l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                                 -+|-...+.-.|+..-++ .|++.+|.++|++...
T Consensus       151 V~srvepLa~d~n~mR~sArEALglAa~k-agd~a~A~~~F~qia~  195 (221)
T COG4649         151 VSSRVEPLAGDGNPMRHSAREALGLAAYK-AGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHhhhccCCCChhHHHHHHHHhHHHHh-ccchHHHHHHHHHHHc
Confidence                       234445555667777887 9999999999998876

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.58  E-value=1.5  Score=26.51  Aligned_cols=25  Identities=12%  Similarity=0.110  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          128 SLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       128 ~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      ..+|.+|++ +|+++.|...+++++.
T Consensus         3 LdLA~ayie-~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIE-MGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHH-cCChHHHHHHHHHHHH
Confidence            467777887 8888888888888874

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=86.49  E-value=6.1  Score=30.55  Aligned_cols=52  Identities=23%  Similarity=0.303  Sum_probs=43.8

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD  123 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~  123 (167)
                      ..+..++..++.++..| ++.++.+++.++. ..|+.++|....+++..+-|.+
T Consensus       126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  126 MLEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcH
Confidence            45567778888888888 5788888888887 7999999999999999999933

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=86.31  E-value=13  Score=30.48  Aligned_cols=88  Identities=9%  Similarity=0.029  Sum_probs=60.6

Q ss_pred             cCC-ChHHHHHHHHHHHHh----CC---CCH-------HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHH
Q 046296           67 NNH-GSSSTDAYNEKMIEA----NP---GNA-------LLLGNYARFLKEVRGD---FAKAEELCGRAILANPGDGNILS  128 (167)
Q Consensus        67 ~~g-~~d~A~~~~~kAL~l----~P---~n~-------~~l~~lA~~l~~~~gd---~e~A~~~~~rAl~l~P~~~~al~  128 (167)
                      +++ +++.|..++++|+++    .+   ..+       .++..++.++. ..+.   .++|+.+++.+-.-.|+.+.++.
T Consensus        47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l-~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~  125 (278)
T PF08631_consen   47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYL-EWDTYESVEKALNALRLLESEYGNKPEVFL  125 (278)
T ss_pred             HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence            445 899999999999988    22   222       33455666554 3343   45666677777677788888775


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          129 LYADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       129 ~lA~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      ..-.++.. ..+.+++.+.+.++|..-+
T Consensus       126 L~l~il~~-~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  126 LKLEILLK-SFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHhc-cCChhHHHHHHHHHHHhcc
Confidence            55555555 7889999999999988644

It is also involved in sporulation [].

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.90  E-value=3.5  Score=37.50  Aligned_cols=84  Identities=18%  Similarity=0.073  Sum_probs=60.6

Q ss_pred             hhhcCCChHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEAN---PGNAL----LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN----ILSLYAD  132 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~---P~n~~----~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~----al~~lA~  132 (167)
                      ++.-.++++.|..++++|+-+-   |+...    +...++.++......+..|...+++||++....|.    .++.++.
T Consensus        56 L~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaq  135 (629)
T KOG2300|consen   56 LLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQ  135 (629)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence            3444578999999999998764   44432    33345555553344789999999999999988873    3445777


Q ss_pred             HHHHHcCCHHHHHHHH
Q 046296          133 LIWQAHKDASRAESYF  148 (167)
Q Consensus       133 ~l~~~~g~~~eA~~~~  148 (167)
                      +... ..++.-|.+.+
T Consensus       136 l~~i-dkD~~sA~elL  150 (629)
T KOG2300|consen  136 LHII-DKDFPSALELL  150 (629)
T ss_pred             HHhh-hccchhHHHHH
Confidence            7776 88999888873

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.82  E-value=2  Score=28.98  Aligned_cols=18  Identities=22%  Similarity=0.215  Sum_probs=12.9

Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 046296          101 EVRGDFAKAEELCGRAIL  118 (167)
Q Consensus       101 ~~~gd~e~A~~~~~rAl~  118 (167)
                      ...+++++|+.+|.+||+
T Consensus        17 D~~g~y~eAl~~Y~~aie   34 (77)
T cd02683          17 DQEGRFQEALVCYQEGID   34 (77)
T ss_pred             HHhccHHHHHHHHHHHHH
Confidence            367888887777777664

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.79  E-value=4  Score=36.60  Aligned_cols=86  Identities=14%  Similarity=-0.076  Sum_probs=62.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHhC--------CCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEAN--------PGNAL----------LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN  125 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~--------P~n~~----------~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~  125 (167)
                      .++++++|..|..-|+.||++-        |..+.          +-..+..++ ..+++.+-|+.+..|.|.+||..+.
T Consensus       185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CY-L~~rkpdlALnh~hrsI~lnP~~fr  263 (569)
T PF15015_consen  185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCY-LRMRKPDLALNHSHRSINLNPSYFR  263 (569)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhh-hhcCCCchHHHHHhhhhhcCcchhh
Confidence            3567788888999999998873        22211          111233344 3688999999999999999999998


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296          126 ILSLYADLIWQAHKDASRAESYFDQA  151 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~~e~A  151 (167)
                      -+..-|.+... ..+|.+|..-+.-|
T Consensus       264 nHLrqAavfR~-LeRy~eAarSamia  288 (569)
T PF15015_consen  264 NHLRQAAVFRR-LERYSEAARSAMIA  288 (569)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            88888888877 88888876544433

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=85.58  E-value=11  Score=34.16  Aligned_cols=89  Identities=13%  Similarity=0.039  Sum_probs=48.2

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD--GNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~--~~al~~lA~~l~~~~g~~~eA  144 (167)
                      ..+++.-|-..|+-.+...|+.+.....+-.+|. ..++-..|.++|+++|..-...  -.+|-.+-..-.. -|+...+
T Consensus       444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi-~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~-~G~lN~v  521 (660)
T COG5107         444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI-RINDEENARALFETSVERLEKTQLKRIYDKMIEYESM-VGSLNNV  521 (660)
T ss_pred             hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHh-hcchHHH
Confidence            3455666666666666666666666666665554 5666666666666666443322  2222222222222 4555555


Q ss_pred             HHHHHHHHHhCCC
Q 046296          145 ESYFDQAVKSAPD  157 (167)
Q Consensus       145 ~~~~e~Al~l~P~  157 (167)
                      ..+=++-..+-|.
T Consensus       522 ~sLe~rf~e~~pQ  534 (660)
T COG5107         522 YSLEERFRELVPQ  534 (660)
T ss_pred             HhHHHHHHHHcCc
Confidence            5555555555554

>smart00101 14_3_3 14-3-3 homologues

Probab=85.55  E-value=4.5  Score=33.27  Aligned_cols=48  Identities=15%  Similarity=0.029  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          106 FAKAEELCGRAILA-----NPGDGNIL---SLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       106 ~e~A~~~~~rAl~l-----~P~~~~al---~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      .++|...|+.|+++     .|.+|..+   .+++.++++.+++.++|.++.++|+.
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd  199 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  199 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56889999999864     47887554   57788999988999998876666655

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.10  E-value=18  Score=33.24  Aligned_cols=93  Identities=19%  Similarity=0.021  Sum_probs=60.6

Q ss_pred             cCCChHHHHHHHHHHHHhCCC--CHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C-HHHHHHHH--HHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPG--NALL----LGNYARFLKEVRGDFAKAEELCGRAILANPG---D-GNILSLYA--DLI  134 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~--n~~~----l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~---~-~~al~~lA--~~l  134 (167)
                      .-.+++.|+.+++|++.+...  ..+.    .+-++.++. .. +...|...++++|+.--.   . ....+.+-  .++
T Consensus        72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~-~~-~~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~  149 (608)
T PF10345_consen   72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYF-KT-NPKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLA  149 (608)
T ss_pred             HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-hc-CHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            447899999999999888744  3322    233456664 34 444499999999987544   2 22222222  222


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Q 046296          135 WQAHKDASRAESYFDQAVKSA--PDDWLNL  162 (167)
Q Consensus       135 ~~~~g~~~eA~~~~e~Al~l~--P~~~~~l  162 (167)
                      +. .+++..|++.++....+.  +.++.+.
T Consensus       150 ~~-~~d~~~Al~~L~~~~~~a~~~~d~~~~  178 (608)
T PF10345_consen  150 LQ-HKDYNAALENLQSIAQLANQRGDPAVF  178 (608)
T ss_pred             Hh-cccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence            33 369999999999998876  4666544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.84  E-value=2.6  Score=33.81  Aligned_cols=45  Identities=13%  Similarity=0.104  Sum_probs=37.6

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPG----NALLLGNYARFLKEVRGDFAKAE  110 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~----n~~~l~~lA~~l~~~~gd~e~A~  110 (167)
                      |+.+.+.++|+.+|.++|++.+.    ||+++..||.+++ ..++++.|-
T Consensus       150 yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~-~~~~~e~AY  198 (203)
T PF11207_consen  150 YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ-KLKNYEQAY  198 (203)
T ss_pred             HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-Hhcchhhhh
Confidence            45567899999999999998654    5999999999887 788888773

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=84.67  E-value=12  Score=28.48  Aligned_cols=53  Identities=9%  Similarity=0.104  Sum_probs=39.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      .+++-++-.+.+....+-+..+|.++..+|.+|-+ .|+..+|.+++.+|.+..
T Consensus        98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANELLKEACEKG  150 (161)
T ss_dssp             HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT
T ss_pred             HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHHHHHHHHhc
Confidence            57788888888888887778899999999999999 999999999999998753

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.57  E-value=7.8  Score=34.55  Aligned_cols=59  Identities=20%  Similarity=0.169  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH-------HHHHHH---------h--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296           92 LGNYARFLKEVRGDFAKAEEL-------CGRAIL---------A--NPGDGNILSLYADLIWQAHKDASRAESYFDQAV  152 (167)
Q Consensus        92 l~~lA~~l~~~~gd~e~A~~~-------~~rAl~---------l--~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al  152 (167)
                      ....+.+|. .+|-++.|+..       |+-||+         +  ..+++..|..+|.+.+. +|+++-|+++|+++-
T Consensus       298 ~~~i~~fL~-~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  298 GQSIARFLE-KKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALR-QGNIELAEECYQKAK  374 (443)
T ss_dssp             HHHHHHHHH-HTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT
T ss_pred             HHHHHHHHH-HCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhc
Confidence            444555664 66666666633       333333         2  34688899999999999 999999999998863

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=84.50  E-value=3.6  Score=37.07  Aligned_cols=71  Identities=13%  Similarity=0.004  Sum_probs=53.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~  136 (167)
                      .+.+++|++.++..+-.=..+++| +|.++..++.++. ...+|++|-.++...=- +.+--++....|.++..
T Consensus       470 EyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~-e~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~lCq  540 (549)
T PF07079_consen  470 EYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLM-ENKRYQEAWEYLQKLPP-NERMRDSKVQKALALCQ  540 (549)
T ss_pred             HHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHH-HHhhHHHHHHHHHhCCC-chhhHHHHHHHHHHHHH
Confidence            456788999999999999999999 8999999999997 68999999999876421 22222444445555544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=84.48  E-value=1.6  Score=35.66  Aligned_cols=92  Identities=11%  Similarity=0.036  Sum_probs=51.3

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHH----------HcCC-HHHHHHHHHHHHHh-----CCCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLG-NYARFLKE----------VRGD-FAKAEELCGRAILA-----NPGDGNI  126 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~-~lA~~l~~----------~~gd-~e~A~~~~~rAl~l-----~P~~~~a  126 (167)
                      |.+.-++++.|+.+.+.||+.+-.-|.-+. +++.++.+          ..+. ++.+  ++.....+     -|+...+
T Consensus        92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~~~~dmpd~vrA  169 (230)
T PHA02537         92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLTTEWDMPDEVRA  169 (230)
T ss_pred             eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhcCCCChHHHH
Confidence            455668999999999999998643332211 22222211          1222 1111  11222222     2444444


Q ss_pred             HHH--HHHHHHH--------HcCCHHHHHHHHHHHHHhCCC
Q 046296          127 LSL--YADLIWQ--------AHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       127 l~~--lA~~l~~--------~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      ...  .|.+++.        ..++..+|+.++++|++++|+
T Consensus       170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k  210 (230)
T PHA02537        170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK  210 (230)
T ss_pred             HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence            443  4444421        145778999999999999996

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=84.43  E-value=6.4  Score=38.36  Aligned_cols=88  Identities=15%  Similarity=0.081  Sum_probs=65.8

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCCHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ----AHKDASRAE  145 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~----~~g~~~eA~  145 (167)
                      .+++|+..|++. .-.|.-|.=+...|.++. ..+++++-+++|.-|++.-|++|.+-...=.+.++    ...+...|.
T Consensus       534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (932)
T PRK13184        534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQ-RLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL  611 (932)
T ss_pred             HHHHHHHHHHHh-cCCCCCchHHHhHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577788888774 446777887888888886 89999999999999999999998765443333332    123445788


Q ss_pred             HHHHHHHHhCCCCH
Q 046296          146 SYFDQAVKSAPDDW  159 (167)
Q Consensus       146 ~~~e~Al~l~P~~~  159 (167)
                      ..+.-|+...|...
T Consensus       612 ~~~~~~~~~~~~~~  625 (932)
T PRK13184        612 VFMLLALWIAPEKI  625 (932)
T ss_pred             HHHHHHHHhCcccc
Confidence            88888999989754

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=84.40  E-value=7.7  Score=32.55  Aligned_cols=98  Identities=12%  Similarity=-0.003  Sum_probs=62.6

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPG--NALLLGNYARF---LKEVRGDFA---KAEELCGRAILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~---l~~~~gd~e---~A~~~~~rAl~l~P~~~~al~~lA~~l~~  136 (167)
                      ..+.++|++=.+.|.+..+...+  ..+..+..+..   +.......+   .-++.++.=++..|++..++..+|.++..
T Consensus        10 LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~   89 (277)
T PF13226_consen   10 LLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVH   89 (277)
T ss_pred             HHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            44567888888888888765443  12211211211   110011111   35567777788999999999988887665


Q ss_pred             ---------------------HcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          137 ---------------------AHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       137 ---------------------~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                                           .+.-.+.|..++.+|+.++|....+.
T Consensus        90 ~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~  136 (277)
T PF13226_consen   90 RAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAA  136 (277)
T ss_pred             HHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence                                 12356789999999999999877544

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=84.11  E-value=4.9  Score=30.30  Aligned_cols=53  Identities=26%  Similarity=0.214  Sum_probs=38.4

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+......+.-.. ..+++.-|.+++..++..+|+|..+...++.+|.. ++...
T Consensus        69 G~d~vl~~A~~~~-~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~-lg~~~  121 (141)
T PF14863_consen   69 GADKVLERAQAAL-AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQ-LGYQS  121 (141)
T ss_dssp             CHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH-
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HHHhc
Confidence            3444555566554 68999999999999999999999999999998877 55433

>PF12854 PPR_1: PPR repeat

Probab=83.60  E-value=3.5  Score=22.97  Aligned_cols=26  Identities=15%  Similarity=0.050  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296          124 GNILSLYADLIWQAHKDASRAESYFDQ  150 (167)
Q Consensus       124 ~~al~~lA~~l~~~~g~~~eA~~~~e~  150 (167)
                      ..++..+-..+.+ .|+.++|+++|++
T Consensus         7 ~~ty~~lI~~~Ck-~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCK-AGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHH-CCCHHHHHHHHHh
Confidence            3445555566666 7777777776654

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=83.54  E-value=9.5  Score=30.73  Aligned_cols=82  Identities=18%  Similarity=0.152  Sum_probs=53.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----------------------HHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLK-----------------------EVRGDFAKAEELCGRAILANPGDGNI  126 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~-----------------------~~~gd~e~A~~~~~rAl~l~P~~~~a  126 (167)
                      +.++|++++.++..++-..+  -++|...+.                       ....|+++|.++-.+|-++  +++.+
T Consensus       127 d~~Ka~~y~traCdl~~~~a--Cf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~a  202 (248)
T KOG4014|consen  127 DSEKAERYMTRACDLEDGEA--CFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQA  202 (248)
T ss_pred             CcHHHHHHHHHhccCCCchH--HHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHH
Confidence            47788888888877654433  333333221                       1125678888888888766  56777


Q ss_pred             HHHHHHHHHH---HcCCHHHHHHHHHHHHHhC
Q 046296          127 LSLYADLIWQ---AHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       127 l~~lA~~l~~---~~g~~~eA~~~~e~Al~l~  155 (167)
                      ..++...+-.   +-.+.++|+.|-.+|.++.
T Consensus       203 CAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  203 CANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             HhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence            7777776644   2246788999988888763

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=83.28  E-value=2.9  Score=23.66  Aligned_cols=27  Identities=26%  Similarity=0.433  Sum_probs=17.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 046296          105 DFAKAEELCGRAILANPGDGNILSLYAD  132 (167)
Q Consensus       105 d~e~A~~~~~rAl~l~P~~~~al~~lA~  132 (167)
                      .++.|..+|++.|...|+ +..|..+|.
T Consensus         2 E~dRAR~IyeR~v~~hp~-~k~WikyAk   28 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE-VKNWIKYAK   28 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence            456777777777777655 455555543

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=82.94  E-value=10  Score=34.84  Aligned_cols=46  Identities=7%  Similarity=0.002  Sum_probs=37.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR  115 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~r  115 (167)
                      |++-.|-+....+|+..|.+|......+.+.. ..|+|+.|.+.+.-
T Consensus       303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~-~lg~ye~~~~~~s~  348 (831)
T PRK15180        303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFS-HLGYYEQAYQDISD  348 (831)
T ss_pred             cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHH-HhhhHHHHHHHhhc
Confidence            67778888899999999999988887887765 78988888776543

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=82.66  E-value=2.8  Score=34.10  Aligned_cols=49  Identities=22%  Similarity=0.162  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          106 FAKAEELCGRAIL-----ANPGDGNIL---SLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       106 ~e~A~~~~~rAl~-----l~P~~~~al---~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      .++|...|++|+.     +.|.+|..+   .+++.++++..++.++|++..++|+..
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            4778888888876     468887544   478888888789999998888887763

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.57  E-value=3.4  Score=27.42  Aligned_cols=19  Identities=21%  Similarity=0.323  Sum_probs=14.9

Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 046296          101 EVRGDFAKAEELCGRAILA  119 (167)
Q Consensus       101 ~~~gd~e~A~~~~~rAl~l  119 (167)
                      ...+++++|+.+|.+|++.
T Consensus        17 D~~g~y~eA~~~Y~~aie~   35 (75)
T cd02678          17 DNAGNYEEALRLYQHALEY   35 (75)
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            4688999998888887753

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=82.35  E-value=6.9  Score=32.17  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=36.3

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296           86 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN------PGDGNILSLYADLIWQAHKDASRAESYFD  149 (167)
Q Consensus        86 P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~------P~~~~al~~lA~~l~~~~g~~~eA~~~~e  149 (167)
                      |.+.....++..++......-..-.++.++||+-.      -.+|..+..+|..+++ .+++.+|+.+|-
T Consensus        46 ~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~-e~~~~~A~~Hfl  114 (260)
T PF04190_consen   46 PVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWK-EGNYYEAERHFL  114 (260)
T ss_dssp             --SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence            34444445555554421112223445555666543      1578999999999999 999999988874

; PDB: 3LKU_E 2WPV_G.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.92  E-value=3.7  Score=27.94  Aligned_cols=18  Identities=17%  Similarity=0.113  Sum_probs=13.3

Q ss_pred             HcCCHHHHHHHHHHHHHh
Q 046296          102 VRGDFAKAEELCGRAILA  119 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l  119 (167)
                      ..++.++|+.+|+++++.
T Consensus        20 E~g~~e~Al~~Y~~gi~~   37 (79)
T cd02679          20 EWGDKEQALAHYRKGLRE   37 (79)
T ss_pred             hcCCHHHHHHHHHHHHHH
Confidence            457788888888887764

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.91  E-value=2.4  Score=35.86  Aligned_cols=95  Identities=8%  Similarity=0.094  Sum_probs=72.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHcCC
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPGDGNILSLYADLI------WQAHKD  140 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~--gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l------~~~~g~  140 (167)
                      .-++.-+.++..+++-+|++...|...-.+|. ..  ..+..-....++.++.||.|...|...-.++      +. ..+
T Consensus        88 ~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le-~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N-~S~  165 (328)
T COG5536          88 HLLDNELDFLDEALKDNPKNYQIWHHRQWMLE-LFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFN-FSD  165 (328)
T ss_pred             hhhhcHHHHHHHHHhcCCchhhhhHHHHHHHH-hCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhcc-chh
Confidence            34566778899999999999999987666654 33  5678888899999999999988887655555      33 445


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          141 ASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +..-.++-..+|..+|.|+.++...
T Consensus       166 ~k~e~eytt~~I~tdi~N~SaW~~r  190 (328)
T COG5536         166 LKHELEYTTSLIETDIYNNSAWHHR  190 (328)
T ss_pred             HHHHHHhHHHHHhhCCCChHHHHHH
Confidence            5555777788899999998887554

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.80  E-value=3.5  Score=27.59  Aligned_cols=19  Identities=37%  Similarity=0.342  Sum_probs=14.9

Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 046296          101 EVRGDFAKAEELCGRAILA  119 (167)
Q Consensus       101 ~~~gd~e~A~~~~~rAl~l  119 (167)
                      ...+++++|+.+|..+|+.
T Consensus        17 D~~g~y~eA~~lY~~ale~   35 (75)
T cd02684          17 DQRGDAAAALSLYCSALQY   35 (75)
T ss_pred             HHhccHHHHHHHHHHHHHH
Confidence            3678899988888888763

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.78  E-value=7.1  Score=35.65  Aligned_cols=82  Identities=22%  Similarity=0.149  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296           72 SSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD--GNILSLYADLIWQAHKDASRAESYFD  149 (167)
Q Consensus        72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~--~~al~~lA~~l~~~~g~~~eA~~~~e  149 (167)
                      +...+.+....++.|+++..+.+.+..+. ..++.+.|+..++..+...-..  .-.++.+++++.- +.+|.+|-.++.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~-~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILS-IKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVG-QHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHH-HcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH
Confidence            66777788888899999999999999987 6778999999999998722122  2233456777777 889999999998


Q ss_pred             HHHHhC
Q 046296          150 QAVKSA  155 (167)
Q Consensus       150 ~Al~l~  155 (167)
                      ....++
T Consensus       328 ~L~des  333 (546)
T KOG3783|consen  328 LLRDES  333 (546)
T ss_pred             HHHhhh
Confidence            887763

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=81.71  E-value=16  Score=26.30  Aligned_cols=47  Identities=17%  Similarity=0.090  Sum_probs=35.3

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCG  114 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~  114 (167)
                      .+.+.....+.+++.++..+|.++..++.+...+.  .-+..+.+.+++
T Consensus        18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~--~~~~~~ll~~l~   64 (140)
T smart00299       18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYA--KYDPQKEIERLD   64 (140)
T ss_pred             HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHH--HHCHHHHHHHHH
Confidence            34567889999999999999988888888777654  335556666655

>PLN03138 Protein TOC75; Provisional

Probab=81.01  E-value=1.3  Score=42.27  Aligned_cols=17  Identities=18%  Similarity=0.184  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHhCCCCH
Q 046296          108 KAEELCGRAILANPGDG  124 (167)
Q Consensus       108 ~A~~~~~rAl~l~P~~~  124 (167)
                      ..++.+.++|.+.|...
T Consensus       165 ~~e~~l~~~i~~kpG~v  181 (796)
T PLN03138        165 GTEDSFFEMVTLRPGGV  181 (796)
T ss_pred             chHHHHHHHHhcCCCCc
Confidence            35566677777777643

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=80.88  E-value=3.8  Score=39.17  Aligned_cols=92  Identities=18%  Similarity=0.107  Sum_probs=60.5

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCH---HHHHHHHHH---HHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-----GDG---NILSLYADL---IWQ  136 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P-----~~~---~al~~lA~~---l~~  136 (167)
                      .+..+.|+.+|++|.+..|.-..- .|+|.+|...-..++..+++-.-++.++.     ...   ..|...|..   -..
T Consensus       300 a~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVL  378 (1226)
T KOG4279|consen  300 AESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVL  378 (1226)
T ss_pred             hhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhh
Confidence            356788999999999999985443 35666665334456666666666666543     111   122222221   122


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296          137 AHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       137 ~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                       ..+|.+|++.-++.+++.|-..+.
T Consensus       379 -And~~kaiqAae~mfKLk~P~WYL  402 (1226)
T KOG4279|consen  379 -ANDYQKAIQAAEMMFKLKPPVWYL  402 (1226)
T ss_pred             -ccCHHHHHHHHHHHhccCCceehH
Confidence             589999999999999999987653

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=80.56  E-value=13  Score=31.69  Aligned_cols=46  Identities=17%  Similarity=0.093  Sum_probs=41.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296          105 DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA  151 (167)
Q Consensus       105 d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A  151 (167)
                      .+-+|+.+++.++..+|.|+.....+..+|.. .|-.+.|.+.|...
T Consensus       198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYESL  243 (365)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHhc
Confidence            36789999999999999999999999999998 99999999988654

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.86
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.76
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.76
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.75
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.74
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.73
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.73
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.71
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.71
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.7
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.7
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.7
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.69
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.69
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.69
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.69
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.68
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.67
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.66
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.66
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.65
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.65
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.64
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.62
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.61
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.61
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.6
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.59
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.59
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.59
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.58
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.58
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.57
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.57
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.57
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.56
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.55
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.55
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.55
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.55
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.54
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.54
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.54
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.54
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.53
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.53
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.53
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.53
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.53
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.52
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.52
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.52
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.51
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.51
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.5
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.5
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.5
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.49
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.49
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.49
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.49
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.49
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.49
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.48
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.48
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.46
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.46
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.46
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.44
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.44
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.43
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.43
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.43
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.43
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.42
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.42
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.41
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.41
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.41
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.4
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.4
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.4
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.39
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.39
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.39
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.38
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.38
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.38
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.36
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.35
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.35
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.35
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.34
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.33
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.31
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.3
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.3
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.3
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.3
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.26
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.24
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.24
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.23
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.22
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.22
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.22
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.21
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.21
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.2
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.19
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.18
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.18
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.16
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.16
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.15
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.15
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.14
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.14
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.13
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.12
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.11
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.1
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.1
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.08
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.07
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.07
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.05
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.04
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.04
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.03
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.02
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.01
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.01
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.0
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.0
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.0
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.97
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.93
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.93
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.92
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.91
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.87
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.82
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.82
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.76
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.76
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.72
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.65
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.64
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.63
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.59
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.58
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.43
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.42
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.37
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.3
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.3
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.28
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.2
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.16
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.16
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.0
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.91
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.89
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.88
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.88
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.81
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.78
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.77
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.75
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.53
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.49
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.37
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.35
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.33
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.27
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.77
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.75
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.7
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.63
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.62
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.41
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.95
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.03
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.1
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.05
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.71
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.44
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.38
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.26
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.88
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.39
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.48
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.34
2o8p_A	227	14-3-3 domain containing protein; signaling protei	90.73
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	90.49
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	89.79
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	89.5
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.23
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	89.02
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	88.83
2npm_A	260	14-3-3 domain containing protein; cell regulator p	88.69
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	88.67
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	88.41
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	88.22
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	88.2
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	87.75
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	87.35
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	84.65
2o8p_A	227	14-3-3 domain containing protein; signaling protei	84.11
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	83.28
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	83.13
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	82.96
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.5
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.08
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	81.49
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	81.26
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	81.02
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	80.85
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.53
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	80.42
2npm_A	260	14-3-3 domain containing protein; cell regulator p	80.02

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.86  E-value=1.1e-20  Score=136.34  Aligned_cols=102  Identities=17%  Similarity=0.141  Sum_probs=97.5

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      |+.|++++++++|+.+|+++|+++|+++.+++++|.++. ..+++++|+..|++||+++|+++.++.++|.++.. ++++
T Consensus        20 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~   97 (126)
T 4gco_A           20 GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREW   97 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCH
Confidence            467899999999999999999999999999999999997 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++|++.|++||+++|+++.++.++
T Consensus        98 ~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           98 SKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCCHHHHHHH
Confidence            999999999999999999887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.80  E-value=4.6e-19  Score=130.80  Aligned_cols=99  Identities=14%  Similarity=0.143  Sum_probs=91.5

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +.+|+..+++++|+.+|+++|+++|+++.+|+++|.++. ..+++++|+.+|++|++++|+++.++.++|.++.. ++++
T Consensus        38 a~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~  115 (150)
T 4ga2_A           38 AKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-NDVT  115 (150)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HCSS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCh
Confidence            357889999999999999999999999999999999987 89999999999999999999999999999999999 9998


Q ss_pred             HHHHHH-HHHHHHhCCCCHHHH
Q 046296          142 SRAESY-FDQAVKSAPDDWLNL  162 (167)
Q Consensus       142 ~eA~~~-~e~Al~l~P~~~~~l  162 (167)
                      ++|... +++|++++|+++.++
T Consensus       116 ~~aa~~~~~~al~l~P~~~~~~  137 (150)
T 4ga2_A          116 DGRAKYWVERAAKLFPGSPAVY  137 (150)
T ss_dssp             SSHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHH
Confidence            876655 699999999999775

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=7.9e-19  Score=131.54  Aligned_cols=95  Identities=13%  Similarity=0.097  Sum_probs=91.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|++.+++++|+.+|+++++++|+++.+|+++|.++. ..+++++|+.+|++|++++|+++.+++++|.++.. +|+++
T Consensus        44 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg~~~  121 (151)
T 3gyz_A           44 YDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LKAPL  121 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHH
Confidence            46778899999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 046296          143 RAESYFDQAVKSAPDDW  159 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~  159 (167)
                      +|+.+|++|+++.|+.+
T Consensus       122 eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          122 KAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHhCCCHH
Confidence            99999999999999876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.78  E-value=4.6e-18  Score=120.00  Aligned_cols=100  Identities=18%  Similarity=0.025  Sum_probs=94.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|+..+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+..|++|++++|+++.++..+|.++.. +++++
T Consensus        12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~   89 (126)
T 3upv_A           12 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYA   89 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHH
Confidence            56788999999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhC------CCCHHHHHh
Q 046296          143 RAESYFDQAVKSA------PDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~------P~~~~~l~~  164 (167)
                      +|+.+|+++++++      |+++.++..
T Consensus        90 ~A~~~~~~al~~~p~~~~~p~~~~~~~~  117 (126)
T 3upv_A           90 SALETLDAARTKDAEVNNGSSAREIDQL  117 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccCCchhHHHHHHH
Confidence            9999999999999      988876644

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.76  E-value=6.9e-19  Score=129.86  Aligned_cols=101  Identities=10%  Similarity=0.055  Sum_probs=94.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+++++++|+..|++++..+|+++.+++++|.++. ..+++++|+++|++||+++|+++.++.++|.++.. +++++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchH
Confidence            56778899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|+.+|++|++++|+++.++.++
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999877553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.76  E-value=7.4e-18  Score=124.43  Aligned_cols=98  Identities=16%  Similarity=0.167  Sum_probs=93.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|+..+++++|+.+|+++|+++|+++.++++++.++. ..+++++|+.+|++||+++|+++.+++++|.+++. +++++
T Consensus        19 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~   96 (164)
T 3sz7_A           19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MADYK   96 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHH
Confidence            56788999999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +|+.+|+++++++|+++.++
T Consensus        97 ~A~~~~~~al~~~p~~~~~~  116 (164)
T 3sz7_A           97 GAKEAYEKGIEAEGNGGSDA  116 (164)
T ss_dssp             HHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHHHHHHHhCCCchHHH
Confidence            99999999999999987644

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.76  E-value=5e-18  Score=121.32  Aligned_cols=96  Identities=11%  Similarity=-0.072  Sum_probs=86.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..+.+.+++++|+..|+++++++|+++.+|+.+|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. .++++
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~  102 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNAN  102 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q 046296          143 RAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~  160 (167)
                      +|+.+|+++++++|+++.
T Consensus       103 ~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          103 AALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHhCcCCCC
Confidence            999999999999998754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.75  E-value=1.1e-17  Score=123.53  Aligned_cols=97  Identities=8%  Similarity=-0.054  Sum_probs=92.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+.+|+++++++|+++.+|++++.++. ..+++++|+.+|++|++++|+++.+++++|.++.. +|+++
T Consensus        29 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~  106 (148)
T 2vgx_A           29 FNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XGELA  106 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHH
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHH
Q 046296          143 RAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~  161 (167)
                      +|+.+|+++++++|+++..
T Consensus       107 ~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A          107 EAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHCcCCCcc
Confidence            9999999999999987643

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.75  E-value=8.3e-18  Score=122.02  Aligned_cols=97  Identities=13%  Similarity=-0.030  Sum_probs=92.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..++..+++++|+.+|+++++++|+++.+|++++.++. ..+++++|+.+|++|++++|+++.+++++|.++.. +|+++
T Consensus        26 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~  103 (142)
T 2xcb_A           26 FNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LGDLD  103 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHH
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHH
Q 046296          143 RAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~  161 (167)
                      +|+.+|+++++++|+++..
T Consensus       104 ~A~~~~~~al~~~p~~~~~  122 (142)
T 2xcb_A          104 GAESGFYSARALAAAQPAH  122 (142)
T ss_dssp             HHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHHhCCCCcch
Confidence            9999999999999988643

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.75  E-value=1.3e-17  Score=119.91  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=89.4

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG-------NILSLYADLI  134 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~-------~al~~lA~~l  134 (167)
                      |+.|++++++++|+.+|++||+++|+++.+++++|.++. .++++++|+..|++||+++|++.       .++.++|.++
T Consensus        15 G~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~   93 (127)
T 4gcn_A           15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF   93 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            357889999999999999999999999999999999987 89999999999999999998763       5788899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          135 WQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       135 ~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      .. ++++++|+++|+++|++.|+ +.++
T Consensus        94 ~~-~~~~~~A~~~~~kal~~~~~-~~~~  119 (127)
T 4gcn_A           94 QK-QNDLSLAVQWFHRSLSEFRD-PELV  119 (127)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HH-cCCHHHHHHHHHHHHhhCcC-HHHH
Confidence            99 99999999999999999885 5444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.74  E-value=1.6e-17  Score=128.08  Aligned_cols=101  Identities=14%  Similarity=0.108  Sum_probs=95.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGN----------------YARFLKEVRGDFAKAEELCGRAILANPGDGNI  126 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~----------------lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a  126 (167)
                      ..++..+++++|+.+|+++++++|+++.+++.                +|.++. ..+++++|+.+|+++|+++|+++.+
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~   90 (208)
T 3urz_A           12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDC   90 (208)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHH
Confidence            45678899999999999999999999999999                999987 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +.++|.+++. ++++++|+.+|+++++++|+++.++.++
T Consensus        91 ~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~l  128 (208)
T 3urz_A           91 LEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFL  128 (208)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            9999999999 9999999999999999999999877543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.73  E-value=1.4e-16  Score=108.34  Aligned_cols=101  Identities=18%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+.+|+++++.+|+++.++.+++.++. ..+++++|+.+++++++++|+++.++..+|.++.. .++++
T Consensus        12 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~   89 (118)
T 1elw_A           12 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFE   89 (118)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHH
Confidence            46778899999999999999999999999999999987 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|+.+|+++++++|+++.++..+
T Consensus        90 ~A~~~~~~~~~~~~~~~~~~~~l  112 (118)
T 1elw_A           90 EAKRTYEEGLKHEANNPQLKEGL  112 (118)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHH
Confidence            99999999999999999877543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.73  E-value=3.1e-17  Score=120.81  Aligned_cols=97  Identities=14%  Similarity=0.059  Sum_probs=92.0

Q ss_pred             cchhhcCCChHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEA------------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD  123 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l------------------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~  123 (167)
                      +..|++++++++|+.+|+++|++                  +|.++.+++++|.++. ..+++++|+.+|++||+++|++
T Consensus        18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~   96 (162)
T 3rkv_A           18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETN   96 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcc
Confidence            35788899999999999999999                  7788899999999987 8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296          124 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       124 ~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      +.+++.+|.+++. ++++++|+.+|++|++++|+++.
T Consensus        97 ~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~  132 (162)
T 3rkv_A           97 EKALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAAAS  132 (162)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             hHHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCCHH
Confidence            9999999999999 99999999999999999999983

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=6.9e-17  Score=125.23  Aligned_cols=100  Identities=14%  Similarity=-0.045  Sum_probs=95.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH----  138 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~----  138 (167)
                      .++.+.+++++|+..|+++|+++|+++.++++++.++. ..+++++|+.+|+++++++|+++.++.++|.++.. +    
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~~   90 (217)
T 2pl2_A           13 VQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA-LYRQA   90 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hhhhh
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999999999 9    


Q ss_pred             -------CCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          139 -------KDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       139 -------g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                             +++++|+..|+++++++|+++.++.+
T Consensus        91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~  123 (217)
T 2pl2_A           91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ  123 (217)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhcccccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence                   99999999999999999999977654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.71  E-value=1.2e-16  Score=113.03  Aligned_cols=93  Identities=16%  Similarity=0.044  Sum_probs=89.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|+..+++++|+.+|+++++++|+++.++++++.++. ..+++++|+.+|+++++++|+++.++..+|.+++. +++++
T Consensus        17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~   94 (137)
T 3q49_B           17 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYD   94 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHH
Confidence            46788899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCC
Q 046296          143 RAESYFDQAVKSAPD  157 (167)
Q Consensus       143 eA~~~~e~Al~l~P~  157 (167)
                      +|+.+|+++++++|+
T Consensus        95 ~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           95 EAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHChh
Confidence            999999999999997

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.71  E-value=4.7e-16  Score=107.22  Aligned_cols=100  Identities=23%  Similarity=0.265  Sum_probs=94.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+.+|+++++.+|+++.++..++.++. ..+++++|+.+++++++++|+++.++..+|.++.. .++++
T Consensus        20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   97 (131)
T 2vyi_A           20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHV   97 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHH
Confidence            46778899999999999999999999999999999987 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+.+|+++++++|+++.++..
T Consensus        98 ~A~~~~~~~~~~~p~~~~~~~~  119 (131)
T 2vyi_A           98 EAVAYYKKALELDPDNETYKSN  119 (131)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCccchHHHHH
Confidence            9999999999999999876644

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.70  E-value=1.3e-16  Score=145.92  Aligned_cols=100  Identities=18%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+++++++|+.+|++||+++|+++.+++++|.++. .++++++|+++|++||+++|+++.++.++|.++.. +++++
T Consensus        17 ~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g~~~   94 (723)
T 4gyw_A           17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQDVQ   94 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            45666677777777777777777777777777776665 56777777777777777777777777777777766 77777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+++|++||+++|+++.++.+
T Consensus        95 ~A~~~~~kAl~l~P~~~~a~~~  116 (723)
T 4gyw_A           95 GALQCYTRAIQINPAFADAHSN  116 (723)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHH
Confidence            7777777777777776665544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.70  E-value=1.2e-16  Score=111.24  Aligned_cols=100  Identities=18%  Similarity=0.065  Sum_probs=93.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+.+|+++++++|+++.++.+++.++. ..+++++|+.+|+++++++|+++.++..+|.++.. +++++
T Consensus        24 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~  101 (133)
T 2lni_A           24 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYT  101 (133)
T ss_dssp             HHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHH
Confidence            46778899999999999999999999999999999886 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+++|+++++++|+++.++..
T Consensus       102 ~A~~~~~~~~~~~p~~~~~~~~  123 (133)
T 2lni_A          102 KAMDVYQKALDLDSSCKEAADG  123 (133)
T ss_dssp             HHHHHHHHHHHHCGGGTHHHHH
T ss_pred             HHHHHHHHHHHhCCCchHHHHH
Confidence            9999999999999998766543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=3.5e-16  Score=111.01  Aligned_cols=101  Identities=18%  Similarity=0.069  Sum_probs=94.4

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH  138 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~  138 (167)
                      +..|+..+++++|+.+|+++++++|++   +.++.+++.++. ..+++++|+.+|+++++++|+++.++..+|.+++. +
T Consensus        35 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~  112 (148)
T 2dba_A           35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-L  112 (148)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-H
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-c
Confidence            346678899999999999999999998   899999999886 89999999999999999999999999999999999 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          139 KDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +++++|+.+|+++++++|+++.++..
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~  138 (148)
T 2dba_A          113 GRLDQAVLDLQRCVSLEPKNKVFQEA  138 (148)
T ss_dssp             TCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            99999999999999999999877654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.70  E-value=3.1e-17  Score=115.29  Aligned_cols=93  Identities=15%  Similarity=0.162  Sum_probs=85.6

Q ss_pred             CCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           68 NHGSSSTDAYNEKMIEA---NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l---~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      .+++++|+.+|+++|++   +|+++.++++++.++. ..+++++|+.+|+++++++|+++.++.++|.++.. ++++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence            57899999999999999   6999999999999987 89999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q 046296          145 ESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~l  162 (167)
                      +.+|++++++.|+++.+.
T Consensus        81 ~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHHhCCCcHHHH
Confidence            999999999999998765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.69  E-value=1.2e-16  Score=121.85  Aligned_cols=95  Identities=19%  Similarity=0.150  Sum_probs=86.3

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPGDGNILSLYADLIWQA  137 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd----------~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~  137 (167)
                      ...+++|+..|+++++++|+++.+|++++.++. ..++          +++|+..|++||+++|+++.+++++|.+|.. 
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~-~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~-   92 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLL-ELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS-   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-
Confidence            367999999999999999999999999999886 5554          5699999999999999999999999999998 


Q ss_pred             cC-----------CHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          138 HK-----------DASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       138 ~g-----------~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++           ++++|+++|++||+++|++..+..+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a  130 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  130 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            64           8999999999999999999876644

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.69  E-value=7.6e-16  Score=111.26  Aligned_cols=99  Identities=19%  Similarity=0.054  Sum_probs=94.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+.+|+++++++|.++.++.+++.++. ..+++++|+.+|+++++++|+++.++..+|.++.. +++++
T Consensus        21 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~   98 (166)
T 1a17_A           21 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFR   98 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccHH
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      +|+.+|+++++++|+++.++.
T Consensus        99 ~A~~~~~~a~~~~p~~~~~~~  119 (166)
T 1a17_A           99 AALRDYETVVKVKPHDKDAKM  119 (166)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHH
Confidence            999999999999999987663

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.69  E-value=1.1e-15  Score=104.49  Aligned_cols=101  Identities=20%  Similarity=0.273  Sum_probs=94.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+.+|+++++.+|.++.++..++.++. ..+++++|+.+|+++++++|.++.++..++.+++. .++++
T Consensus        17 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~   94 (125)
T 1na0_A           17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYD   94 (125)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHH
Confidence            45778899999999999999999999999999999887 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|+.+|+++++++|+++.++.++
T Consensus        95 ~A~~~~~~~~~~~~~~~~~~~~l  117 (125)
T 1na0_A           95 EAIEYYQKALELDPNNAEAKQNL  117 (125)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHH
Confidence            99999999999999998876543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.69  E-value=2.6e-16  Score=117.04  Aligned_cols=96  Identities=15%  Similarity=0.012  Sum_probs=86.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..+...++++.|+..++++++++|+++.++..++.++. ..+++++|+++|+++++++|+++.++.++|.++.. +++++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~  158 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRD  158 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHH
Confidence            35667788999999999999999999999999999886 79999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q 046296          143 RAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~  160 (167)
                      +|+++|++||+++|+++.
T Consensus       159 ~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          159 EAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHhCCccCHH
Confidence            999999999999998764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.69  E-value=2.6e-16  Score=143.91  Aligned_cols=101  Identities=21%  Similarity=0.100  Sum_probs=96.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+++++++|+.+|++||+++|+++.+++++|.++. .++++++|+++|++||+++|+++.++.++|.++.. +|+++
T Consensus        51 ~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~  128 (723)
T 4gyw_A           51 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNIP  128 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            57888999999999999999999999999999999997 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|+++|++||+++|+++.++.++
T Consensus       129 eAi~~~~~Al~l~P~~~~a~~~L  151 (723)
T 4gyw_A          129 EAIASYRTALKLKPDFPDAYCNL  151 (723)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHhhh
Confidence            99999999999999999887664

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.69  E-value=8.8e-17  Score=122.62  Aligned_cols=96  Identities=14%  Similarity=0.046  Sum_probs=89.7

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPG-------NAL-----LLGNYARFLKEVRGDFAKAEELCGRAILA-------NPG  122 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~-------n~~-----~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-------~P~  122 (167)
                      ++.+++.+++++|+..|++||+++|+       +..     +|+|++.++. ..+++++|+.+|++||++       +|+
T Consensus        18 G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd   96 (159)
T 2hr2_A           18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQD   96 (159)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence            35677889999999999999999999       444     9999999997 899999999999999999       999


Q ss_pred             CHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          123 DGNIL----SLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       123 ~~~al----~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      ++.+|    +++|.++.. ++++++|+..|++||+++|++.
T Consensus        97 ~~~A~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           97 EGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCcH
Confidence            99999    999999999 9999999999999999999875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.68  E-value=8.7e-16  Score=107.49  Aligned_cols=98  Identities=12%  Similarity=0.010  Sum_probs=92.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~  136 (167)
                      ..++..+++++|+..|+++++.+|+++   .+++.++.++. ..+++++|+.+|+++++.+|++   +.+++.+|.+++.
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~   88 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence            467788999999999999999999998   89999999987 8999999999999999999999   8999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          137 AHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       137 ~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                       ++++++|+.+|+++++..|+++.+.
T Consensus        89 -~g~~~~A~~~~~~~~~~~p~~~~~~  113 (129)
T 2xev_A           89 -EGKNTEAQQTLQQVATQYPGSDAAR  113 (129)
T ss_dssp             -TTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHCCCChHHH
Confidence             9999999999999999999998654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=5.8e-16  Score=119.99  Aligned_cols=96  Identities=11%  Similarity=-0.066  Sum_probs=56.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR-----------GDFAKAEELCGRAILANPGDGNILSLYAD  132 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~-----------gd~e~A~~~~~rAl~l~P~~~~al~~lA~  132 (167)
                      +|.+.+++++|+.+|+++++++|+++.++++++.++. ..           +++++|+..|++|++++|+++.++.++|.
T Consensus        48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~  126 (217)
T 2pl2_A           48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL  126 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3445556666666666666666666666666665554 45           56666666666666666666666655555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          133 LIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       133 ~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ++.. ++++++|++.|++|++++ +++.++
T Consensus       127 ~~~~-~g~~~~A~~~~~~al~~~-~~~~~~  154 (217)
T 2pl2_A          127 VYAL-LGERDKAEASLKQALALE-DTPEIR  154 (217)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred             HHHH-cCChHHHHHHHHHHHhcc-cchHHH
Confidence            5555 555555555555555555 554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.68  E-value=5.2e-16  Score=104.75  Aligned_cols=95  Identities=13%  Similarity=0.019  Sum_probs=90.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-C
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG--DGNILSLYADLIWQAH-K  139 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~--~~~al~~lA~~l~~~~-g  139 (167)
                      .+|...+++++|+.+|+++++++|.++.++.+++.++. ..+++++|+.+|+++++++|+  ++.++..++.++.. . +
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~~   91 (112)
T 2kck_A           14 VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IEG   91 (112)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CSS
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HhC
Confidence            46778899999999999999999999999999999987 899999999999999999999  99999999999999 9 9


Q ss_pred             CHHHHHHHHHHHHHhCCCCH
Q 046296          140 DASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P~~~  159 (167)
                      ++++|+++|+++++..|+++
T Consensus        92 ~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           92 KEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CSHHHHHHHHHHGGGCCCCC
T ss_pred             CHHHHHHHHHHHhhcccCCC
Confidence            99999999999999999764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.67  E-value=9.5e-16  Score=116.23  Aligned_cols=100  Identities=10%  Similarity=-0.042  Sum_probs=94.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA----------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI  126 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~----------------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a  126 (167)
                      ..|+.++++++|+.+|++++++.|+++                .++.++|.++. ..+++++|+.+|+++++++|+++.+
T Consensus        46 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~  124 (198)
T 2fbn_A           46 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKA  124 (198)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHH
Confidence            567888999999999999999999998                89999999987 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++.+|.+++. ++++++|+.+|+++++++|+++.++..
T Consensus       125 ~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~  161 (198)
T 2fbn_A          125 LYKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNS  161 (198)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            9999999999 999999999999999999999877654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.66  E-value=1.1e-15  Score=126.65  Aligned_cols=101  Identities=15%  Similarity=0.046  Sum_probs=94.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNIL  127 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n---------------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al  127 (167)
                      .+|++++++++|+.+|++||+++|++               +.+++++|.++. ..+++++|+.+|++||+++|+++.++
T Consensus       155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~  233 (336)
T 1p5q_A          155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGL  233 (336)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            46778899999999999999999999               699999999987 89999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          128 SLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       128 ~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +++|.+++. ++++++|+.+|++|++++|+++.++.++
T Consensus       234 ~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l  270 (336)
T 1p5q_A          234 SRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQL  270 (336)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            999999999 9999999999999999999998776543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.66  E-value=2.6e-15  Score=111.54  Aligned_cols=100  Identities=13%  Similarity=0.039  Sum_probs=72.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------------------------------HHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD----------------------------------FAK  108 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd----------------------------------~e~  108 (167)
                      .+|.+++++++|+.+|+++|+++|+++.++..+|.++. ..++                                  +++
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (184)
T 3vtx_A           13 DKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQA   91 (184)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHH
Confidence            56778899999999999999999999999998888775 4554                                  455


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          109 AEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       109 A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      |+..++++++++|+++.++..+|.++.. ++++++|+++|+++++++|+++.++.+
T Consensus        92 a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~  146 (184)
T 3vtx_A           92 AIDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQS  146 (184)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHH
Confidence            5555555556666666666666666666 777777777777777777777665543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.65  E-value=2.3e-15  Score=115.64  Aligned_cols=98  Identities=11%  Similarity=0.023  Sum_probs=93.0

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P-~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      +..|+..+++++|+.+|+++++++| .++.+++++|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. +++
T Consensus        14 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~   91 (228)
T 4i17_A           14 GNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKN   91 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-ccc
Confidence            3567889999999999999999999 99999999999987 89999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHH
Q 046296          141 ASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      +++|+.+|+++++++|+++.+
T Consensus        92 ~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           92 NQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHH
Confidence            999999999999999999844

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.65  E-value=8.9e-16  Score=130.52  Aligned_cols=101  Identities=12%  Similarity=0.078  Sum_probs=90.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd-~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      .+|.+.+++++|+.+|+++|+++|+++.+|++++.++. ..++ +++|+.+|++||+++|+++.+|++++.++.. ++++
T Consensus       105 ~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~  182 (382)
T 2h6f_A          105 AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDP  182 (382)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCC
T ss_pred             HHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCH
Confidence            45666788999999999999999999999999999887 7886 9999999999999999999999999999998 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++|+.+|++||+++|+++.++.++
T Consensus       183 ~eAl~~~~kal~ldP~~~~a~~~l  206 (382)
T 2h6f_A          183 SQELEFIADILNQDAKNYHAWQHR  206 (382)
T ss_dssp             TTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccCHHHHHHH
Confidence            999999999999999998877543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.64  E-value=5.1e-17  Score=121.61  Aligned_cols=94  Identities=11%  Similarity=0.038  Sum_probs=85.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFD  149 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e  149 (167)
                      ++-.+-..|+++++++|+++.+++++|.++. ..+++++|+.+|+++++++|+++.+|.++|.++.. ++++++|+.+|+
T Consensus        17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~   94 (151)
T 3gyz_A           17 DAINSGATLKDINAIPDDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYA   94 (151)
T ss_dssp             HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHH
Confidence            3344445678899999999999999999997 89999999999999999999999999999999999 999999999999


Q ss_pred             HHHHhCCCCHHHHHhc
Q 046296          150 QAVKSAPDDWLNLIKL  165 (167)
Q Consensus       150 ~Al~l~P~~~~~l~~y  165 (167)
                      +|++++|+++.++.++
T Consensus        95 ~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           95 VAFALGKNDYTPVFHT  110 (151)
T ss_dssp             HHHHHSSSCCHHHHHH
T ss_pred             HHHhhCCCCcHHHHHH
Confidence            9999999999887654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.64  E-value=6.2e-16  Score=131.49  Aligned_cols=101  Identities=13%  Similarity=0.024  Sum_probs=94.6

Q ss_pred             chhhcCCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           63 NYSNNNHG-SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        63 ~~y~~~g~-~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      .+|...++ +++|+.+|+++|+++|+++.+|++++.++. ..+++++|+.+|++||+++|+++.+|++++.++.. ++++
T Consensus       139 ~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~  216 (382)
T 2h6f_A          139 VLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLW  216 (382)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCC
T ss_pred             HHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCCh
Confidence            45667786 999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++|+.+|+++|+++|+++.++.++
T Consensus       217 ~eAl~~~~~al~l~P~~~~a~~~l  240 (382)
T 2h6f_A          217 DNELQYVDQLLKEDVRNNSVWNQR  240 (382)
T ss_dssp             TTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999999887654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.64  E-value=3.2e-15  Score=103.22  Aligned_cols=98  Identities=17%  Similarity=0.234  Sum_probs=90.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-------GNILSLYADLIW  135 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-------~~al~~lA~~l~  135 (167)
                      ..|...+++++|+.+|+++++++|.++.++.+++.++. ..+++++|+.+|++++.+.|++       +.++..+|.++.
T Consensus        12 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~   90 (131)
T 1elr_A           12 NDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF   90 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999987 7999999999999999999987       999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          136 QAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       136 ~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      . .+++++|+.+|++++++.| ++.++.
T Consensus        91 ~-~~~~~~A~~~~~~~~~~~~-~~~~~~  116 (131)
T 1elr_A           91 K-EEKYKDAIHFYNKSLAEHR-TPDVLK  116 (131)
T ss_dssp             H-TTCHHHHHHHHHHHHHHCC-CHHHHH
T ss_pred             H-hccHHHHHHHHHHHHHhCC-CHHHHH
Confidence            9 9999999999999999999 565443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=1.4e-15  Score=117.10  Aligned_cols=97  Identities=10%  Similarity=0.122  Sum_probs=87.7

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ-----  136 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~-----  136 (167)
                      +.+|...+++++|+.+|+++|+++|+++.+++++|.++. ..+++++|+.+|+++++++|+++.+++++|.+++.     
T Consensus        61 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            357888999999999999999999999999999999987 89999999999999999999999999999987754     


Q ss_pred             -----------------------------HcCCHHHHHHHHHHHHHhCCCCH
Q 046296          137 -----------------------------AHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       137 -----------------------------~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                                                   ..+++++|+.+|++||+++|++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence                                         02468899999999999999754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.64  E-value=1.5e-15  Score=116.74  Aligned_cols=100  Identities=14%  Similarity=0.032  Sum_probs=93.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG-------NILSLYADLIW  135 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~-------~al~~lA~~l~  135 (167)
                      .+|...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|+++++++|+++       .++..+|.+++
T Consensus        50 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  128 (228)
T 4i17_A           50 VCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ  128 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence            46788899999999999999999999999999999987 89999999999999999999999       66999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC--CHHHHHh
Q 046296          136 QAHKDASRAESYFDQAVKSAPD--DWLNLIK  164 (167)
Q Consensus       136 ~~~g~~~eA~~~~e~Al~l~P~--~~~~l~~  164 (167)
                      . ++++++|+++|++|++++|+  ++.++.+
T Consensus       129 ~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~  158 (228)
T 4i17_A          129 Q-AGNIEKAEENYKHATDVTSKKWKTDALYS  158 (228)
T ss_dssp             H-TTCHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             H-hccHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence            9 99999999999999999999  7766644

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.62  E-value=4.3e-15  Score=110.12  Aligned_cols=96  Identities=14%  Similarity=0.120  Sum_probs=74.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDF--AKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~--e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      .+|...+++++|+.+|+++++++|+++.++.+++.+++...+++  ++|+.+|+++++++|+++.++..+|.+++. +++
T Consensus        52 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~  130 (177)
T 2e2e_A           52 EYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QAN  130 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccc
Confidence            35667777888888888888888888888888887733357777  888888888888888888888888888877 888


Q ss_pred             HHHHHHHHHHHHHhCCCCH
Q 046296          141 ASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~  159 (167)
                      +++|+.+|+++++++|+++
T Consensus       131 ~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          131 YAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHHHhhCCCCc
Confidence            8888888888888887764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.61  E-value=3.7e-15  Score=128.47  Aligned_cols=101  Identities=12%  Similarity=0.069  Sum_probs=90.8

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI  126 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n---------------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a  126 (167)
                      +.+|++++++++|+.+|++||+++|++               ..+++++|.++. ..+++++|+.+|++||+++|+++.+
T Consensus       275 G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a  353 (457)
T 1kt0_A          275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKG  353 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHH
Confidence            356788999999999999999999999               799999999987 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++++|.+++. ++++++|+.+|++|++++|+++.++.+
T Consensus       354 ~~~~g~a~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~  390 (457)
T 1kt0_A          354 LYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQ  390 (457)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred             HHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999 999999999999999999999866543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.61  E-value=7.1e-15  Score=127.71  Aligned_cols=101  Identities=20%  Similarity=0.063  Sum_probs=95.0

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +..|.+++++++|+.+|++|++++|+++.+++++|.++. ..+++++|+++|++|++++|+++.++.++|.++.. ++++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~   90 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKF   90 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCH
Confidence            357788899999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHh
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++|+++|++|++++|+++.++.+
T Consensus        91 ~eA~~~~~~al~~~p~~~~~~~~  113 (477)
T 1wao_1           91 RAALRDYETVVKVKPHDKDAKMK  113 (477)
T ss_dssp             HHHHHHHHHHHHHSTTCTTHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999998766543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.61  E-value=1.1e-14  Score=112.99  Aligned_cols=98  Identities=10%  Similarity=0.040  Sum_probs=92.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++++|+++.++..+|.++. ..+++++|+.+|+++++++|+++.++..+|.+++. .++++
T Consensus        51 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~  128 (275)
T 1xnf_A           51 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDK  128 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHH
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +|+.+|+++++++|+++...
T Consensus       129 ~A~~~~~~a~~~~~~~~~~~  148 (275)
T 1xnf_A          129 LAQDDLLAFYQDDPNDPFRS  148 (275)
T ss_dssp             HHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHH
Confidence            99999999999999998443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.60  E-value=2.6e-14  Score=98.24  Aligned_cols=99  Identities=18%  Similarity=0.232  Sum_probs=89.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+.+|+++++.+|.++.++..++.++. ..+++++|+.++++++..+|.++.++..++.++.. .++++
T Consensus         9 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~   86 (136)
T 2fo7_A            9 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYD   86 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHH
Confidence            35667789999999999999999999999999998886 78999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      +|+++|++++++.|.++.++.
T Consensus        87 ~A~~~~~~~~~~~~~~~~~~~  107 (136)
T 2fo7_A           87 EAIEYYQKALELDPRSAEAWY  107 (136)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHH
Confidence            999999999999998876553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.59  E-value=4.2e-14  Score=102.59  Aligned_cols=100  Identities=13%  Similarity=-0.029  Sum_probs=86.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++.+|.++.++..++.++. ..+++++|+.+++++++++|.++.++..++.++.. .++++
T Consensus        50 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~  127 (186)
T 3as5_A           50 IAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGRFD  127 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHH
Confidence            45677888999999999999999999999999988886 78899999999999999999999999999999888 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+.+|++++++.|+++.++..
T Consensus       128 ~A~~~~~~~~~~~~~~~~~~~~  149 (186)
T 3as5_A          128 EAIDSFKIALGLRPNEGKVHRA  149 (186)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCccchHHHHH
Confidence            9999999999999988766543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.9e-14  Score=110.05  Aligned_cols=100  Identities=18%  Similarity=0.025  Sum_probs=91.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++++|+++.++.+++.++. ..+++++|+.+|+++++++|+++.++..+|.++.. +++++
T Consensus       147 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~  224 (258)
T 3uq3_A          147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYA  224 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-HhhHH
Confidence            46778899999999999999999999999999999886 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhC------CCCHHHHHh
Q 046296          143 RAESYFDQAVKSA------PDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~------P~~~~~l~~  164 (167)
                      +|+.+|+++++++      |++..++..
T Consensus       225 ~A~~~~~~a~~~~~~~~~~p~~~~~~~~  252 (258)
T 3uq3_A          225 SALETLDAARTKDAEVNNGSSAREIDQL  252 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence            9999999999999      888776643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.59  E-value=1.9e-15  Score=111.34  Aligned_cols=88  Identities=8%  Similarity=-0.100  Sum_probs=83.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296           76 AYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus        76 ~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      ..|+++++++|+++.++++++.++. ..+++++|+.+|++++.++|+++.++..+|.++.. ++++++|+++|++|++++
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence            5689999999999999999999987 89999999999999999999999999999999999 999999999999999999


Q ss_pred             CCCHHHHHhc
Q 046296          156 PDDWLNLIKL  165 (167)
Q Consensus       156 P~~~~~l~~y  165 (167)
                      |+++.++.++
T Consensus        86 p~~~~~~~~l   95 (148)
T 2vgx_A           86 IXEPRFPFHA   95 (148)
T ss_dssp             TTCTHHHHHH
T ss_pred             CCCchHHHHH
Confidence            9998877543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.59  E-value=4.9e-15  Score=119.61  Aligned_cols=95  Identities=16%  Similarity=0.041  Sum_probs=91.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|+..+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+..|++|++++|+++.+++++|.++.. +++++
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~   89 (281)
T 2c2l_A           12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYD   89 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            56788999999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 046296          143 RAESYFDQAVKSAPDDW  159 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~  159 (167)
                      +|+.+|+++++++|+++
T Consensus        90 ~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           90 EAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCccch
Confidence            99999999999999763

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.58  E-value=7.2e-15  Score=123.99  Aligned_cols=102  Identities=18%  Similarity=0.087  Sum_probs=95.2

Q ss_pred             cchhhcCCChHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIE----------------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN  125 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~----------------l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~  125 (167)
                      +..|++++++++|+.+|++||+                ++|.++.+++++|.++. ..+++++|+.+|++||+++|+++.
T Consensus       230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~  308 (370)
T 1ihg_A          230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTK  308 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHH
Confidence            4577888999999999999999                88899999999999987 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          126 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +++++|.++.. ++++++|+.+|++|++++|+++.++..+
T Consensus       309 a~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          309 ALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999 9999999999999999999998776543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.58  E-value=1.2e-14  Score=101.04  Aligned_cols=84  Identities=14%  Similarity=0.112  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296           72 SSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA  151 (167)
Q Consensus        72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A  151 (167)
                      ++|+..|+++++++|+++.+++++|.++. ..+++++|+.+|+++++++|+++.++.++|.++.. ++++++|+.+|+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            36889999999999999999999999987 89999999999999999999999999999999999 99999999999999


Q ss_pred             HHhCCC
Q 046296          152 VKSAPD  157 (167)
Q Consensus       152 l~l~P~  157 (167)
                      +++.|.
T Consensus        80 l~~~~~   85 (115)
T 2kat_A           80 LAAAQS   85 (115)
T ss_dssp             HHHHHH
T ss_pred             HHhccc
Confidence            999884

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.57  E-value=9.7e-15  Score=108.20  Aligned_cols=98  Identities=12%  Similarity=0.181  Sum_probs=87.3

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCH--
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL-IWQAHKDA--  141 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~-l~~~~g~~--  141 (167)
                      +...+++++|+..|+++++.+|+++.++..+|.++. ..+++++|+.+|+++++++|+++.++..+|.+ ++. .+++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-ASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCcch
Confidence            556789999999999999999999999999999987 89999999999999999999999999999999 667 8998  


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHh
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++|+.+|+++++++|+++.++.+
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~  120 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALML  120 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHH
Confidence            99999999999999999877644

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.57  E-value=2.5e-14  Score=108.03  Aligned_cols=95  Identities=11%  Similarity=0.020  Sum_probs=85.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG----------------NI  126 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~----------------~a  126 (167)
                      .+|...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|++++++.|.+.                .+
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  123 (213)
T 1hh8_A           45 CMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV  123 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHH
Confidence            46778899999999999999999999999999999886 79999999999999999888776                89


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      +.++|.+++. ++++++|+.+|+++++++|++.
T Consensus       124 ~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          124 LYNIAFMYAK-KEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHHH-ccCHHHHHHHHHHHHHcCcccc
Confidence            9999999998 9999999999999999999653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.57  E-value=3.4e-14  Score=115.57  Aligned_cols=101  Identities=12%  Similarity=0.137  Sum_probs=90.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      .+|...+++++|+.+|+++++++|+  ++.++++++.++. ..+++++|+.+|+++++++|+++.++.+++.++.. +++
T Consensus       185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~  262 (365)
T 4eqf_A          185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDR  262 (365)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC
Confidence            4677788999999999999999999  9999999999886 79999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          141 ASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +++|+.+|+++++++|+++.++.++
T Consensus       263 ~~~A~~~~~~al~~~p~~~~~~~~l  287 (365)
T 4eqf_A          263 SEEAVEAYTRALEIQPGFIRSRYNL  287 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHH
Confidence            9999999999999999998776543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.57  E-value=4.2e-15  Score=123.36  Aligned_cols=101  Identities=18%  Similarity=0.030  Sum_probs=84.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA-----------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN  125 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~-----------------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~  125 (167)
                      ..|++++++++|+.+|++||++.|+++                 .+++++|.++. ..+++++|+.+|++||+++|+++.
T Consensus       187 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~  265 (338)
T 2if4_A          187 NSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPK  265 (338)
T ss_dssp             HHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHH
Confidence            467788999999999999999999988                 48999999887 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          126 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +++++|.++.. ++++++|+.+|++|++++|+++.++.++
T Consensus       266 a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L  304 (338)
T 2if4_A          266 ALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRREL  304 (338)
T ss_dssp             HHHHHHHHHHT-TTCHHHHHHHHHHTTC------------
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999999999 9999999999999999999998776543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=4.1e-14  Score=107.80  Aligned_cols=98  Identities=15%  Similarity=0.143  Sum_probs=57.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +|...+++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+|+++++.+|+++.++..++.++.. ++++++
T Consensus       134 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~  211 (243)
T 2q7f_A          134 VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA-NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY-KENREK  211 (243)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCTTH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-ccCHHH
Confidence            3445555566666666666666655555555555554 45556666666666666666666666666666555 566666


Q ss_pred             HHHHHHHHHHhCCCCHHHHH
Q 046296          144 AESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l~  163 (167)
                      |+.+|+++++++|+++.++.
T Consensus       212 A~~~~~~~~~~~p~~~~~~~  231 (243)
T 2q7f_A          212 ALEMLDKAIDIQPDHMLALH  231 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHccCcchHHHHH
Confidence            66666666666666555443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.56  E-value=1.4e-14  Score=104.10  Aligned_cols=84  Identities=18%  Similarity=0.133  Sum_probs=76.9

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296           80 KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus        80 kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      ++..+||+.+.++.++|..++ ..+++++|+.+|++||+++|+++.++.++|.+++. ++++++|+..|++||+++|+++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhh
Confidence            456689999999999999997 89999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHhc
Q 046296          160 LNLIKL  165 (167)
Q Consensus       160 ~~l~~y  165 (167)
                      .++.++
T Consensus        82 ~a~~~l   87 (126)
T 4gco_A           82 KGYIRK   87 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.55  E-value=5.2e-14  Score=114.37  Aligned_cols=93  Identities=15%  Similarity=0.106  Sum_probs=77.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR-AES  146 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e-A~~  146 (167)
                      .+++++|+.+|+++++.+|+++.+++++|.++. ..+++++|+++|++|++++|+++.++.+++.++.. +|++++ +.+
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~-~g~~~eaa~~  256 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH-LGKPPEVTNR  256 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCHHHHHH
Confidence            467888888888888888888888888888776 78888888888888888888888888888888888 888765 568


Q ss_pred             HHHHHHHhCCCCHHHH
Q 046296          147 YFDQAVKSAPDDWLNL  162 (167)
Q Consensus       147 ~~e~Al~l~P~~~~~l  162 (167)
                      +++++++++|+++.+.
T Consensus       257 ~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          257 YLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHhCCCChHHH
Confidence            8888888888888765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.55  E-value=7e-14  Score=96.02  Aligned_cols=94  Identities=19%  Similarity=0.273  Sum_probs=88.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++.+|.++.++..++.++. ..+++++|+.+++++++..|.++.++..++.++.. .++++
T Consensus        43 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~  120 (136)
T 2fo7_A           43 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYD  120 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHH
Confidence            35667789999999999999999999999999999887 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 046296          143 RAESYFDQAVKSAPDD  158 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~  158 (167)
                      +|+.+|+++++++|++
T Consensus       121 ~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          121 EAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHccCCCC
Confidence            9999999999999974

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.55  E-value=1.3e-13  Score=104.96  Aligned_cols=97  Identities=14%  Similarity=0.206  Sum_probs=59.8

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +|...+++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+|+++++++|+++.++..++.++.. .+++++
T Consensus        66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~  143 (243)
T 2q7f_A           66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQPKL  143 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccHHH
Confidence            4455566666666666666666666666666666554 56666666666666666666666666666666665 666666


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q 046296          144 AESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l  162 (167)
                      |+.+|++++++.|+++.++
T Consensus       144 A~~~~~~~~~~~~~~~~~~  162 (243)
T 2q7f_A          144 ALPYLQRAVELNENDTEAR  162 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHhCCccHHHH
Confidence            6666666666666655443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.55  E-value=9.5e-15  Score=105.72  Aligned_cols=87  Identities=6%  Similarity=-0.129  Sum_probs=79.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296           76 AYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus        76 ~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      ..|+++++++|+++.+++.+|..+. ..+++++|+.+|++++.++|+++.++..+|.++.. ++++++|+.+|++|++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence            5788999999999999999999987 89999999999999999999999999999999999 999999999999999999


Q ss_pred             CCCHHHHHh
Q 046296          156 PDDWLNLIK  164 (167)
Q Consensus       156 P~~~~~l~~  164 (167)
                      |+++.++.+
T Consensus        83 p~~~~~~~~   91 (142)
T 2xcb_A           83 INEPRFPFH   91 (142)
T ss_dssp             TTCTHHHHH
T ss_pred             CCCcHHHHH
Confidence            999887654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.54  E-value=5.3e-14  Score=122.78  Aligned_cols=101  Identities=15%  Similarity=0.132  Sum_probs=91.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++++|+++.++.++|.++. ..+++++|+++|++|++++|+++.++.++|.++.. +++++
T Consensus        31 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~  108 (568)
T 2vsy_A           31 DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AGQAE  108 (568)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHH
Confidence            46677789999999999999999999999999999886 79999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|+++|+++++++|+++.++.++
T Consensus       109 ~A~~~~~~al~~~p~~~~~~~~l  131 (568)
T 2vsy_A          109 AAAAAYTRAHQLLPEEPYITAQL  131 (568)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999998776543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.54  E-value=7.1e-14  Score=112.91  Aligned_cols=93  Identities=14%  Similarity=0.015  Sum_probs=55.9

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +|...+++++|+.+|+++++++|+++.++.+++.++. ..+++++|+.+|+++++++|+++.++..+|.++.. ++++++
T Consensus       226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~  303 (368)
T 1fch_A          226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHRE  303 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHH
Confidence            4455556666666666666666666666666665554 55666666666666666666666666666666665 666666


Q ss_pred             HHHHHHHHHHhCCCC
Q 046296          144 AESYFDQAVKSAPDD  158 (167)
Q Consensus       144 A~~~~e~Al~l~P~~  158 (167)
                      |+.+|++++++.|++
T Consensus       304 A~~~~~~al~~~~~~  318 (368)
T 1fch_A          304 AVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            666666666665555

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=7.3e-14  Score=106.81  Aligned_cols=100  Identities=18%  Similarity=0.109  Sum_probs=89.8

Q ss_pred             chhhcCCChHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIE--------------------------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRA  116 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~--------------------------l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rA  116 (167)
                      .+|...+++++|+.+|+++++                          .+|.++.++..++.++. ..+++++|+.+|+++
T Consensus        87 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a  165 (258)
T 3uq3_A           87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNAVKAYTEM  165 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence            356677788888888888887                          77888899999999987 899999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          117 ILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       117 l~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++++|+++.++..+|.++.. .+++++|+.+|+++++++|+++.++..
T Consensus       166 ~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~  212 (258)
T 3uq3_A          166 IKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIR  212 (258)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            99999999999999999999 999999999999999999999877643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.54  E-value=1e-13  Score=113.78  Aligned_cols=94  Identities=18%  Similarity=0.172  Sum_probs=45.4

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      ...+++++|+..|+++++++|+++.++.+++.++. ..+++++|+.+|+++++++|+++.++.+++.++.. .+++++|+
T Consensus       214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~  291 (388)
T 1w3b_A          214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE-KGSVAEAE  291 (388)
T ss_dssp             HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH-HSCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            33344444444444444444444444444444443 44445555555555555555555555455544444 45555555


Q ss_pred             HHHHHHHHhCCCCHHH
Q 046296          146 SYFDQAVKSAPDDWLN  161 (167)
Q Consensus       146 ~~~e~Al~l~P~~~~~  161 (167)
                      .+|++++++.|+++.+
T Consensus       292 ~~~~~al~~~p~~~~~  307 (388)
T 1w3b_A          292 DCYNTALRLCPTHADS  307 (388)
T ss_dssp             HHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhhCcccHHH
Confidence            5555555555544433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.53  E-value=3.3e-14  Score=122.79  Aligned_cols=94  Identities=10%  Similarity=-0.125  Sum_probs=89.7

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR--------GDFAKAEELCGRAILANP---GDGNILSLYADLIWQA  137 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~--------gd~e~A~~~~~rAl~l~P---~~~~al~~lA~~l~~~  137 (167)
                      +++++|+.+|+++++++|+++.+|++++.++. ..        +++++|+.+|++|++++|   +++.++.++|.+++. 
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-  270 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-  270 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-
Confidence            89999999999999999999999999999986 67        899999999999999999   999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          138 HKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       138 ~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++++++|+++|++|++++|+++.++.+
T Consensus       271 ~g~~~~A~~~~~~al~l~p~~~~a~~~  297 (474)
T 4abn_A          271 EESYGEALEGFSQAAALDPAWPEPQQR  297 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999999976644

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.53  E-value=2.7e-14  Score=116.17  Aligned_cols=99  Identities=14%  Similarity=-0.002  Sum_probs=92.2

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +..|.+.+++++|+.+|+++++++|+++.+++.++.++. ..+++++|+.+|+++++++|+++.++..++.++.. ++++
T Consensus        72 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~  149 (365)
T 4eqf_A           72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCLELQPNNLKALMALAVSYTN-TSHQ  149 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc-cccH
Confidence            346778899999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHH
Q 046296          142 SRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ++|+.+|++++++.|+++.++
T Consensus       150 ~~A~~~~~~al~~~p~~~~~~  170 (365)
T 4eqf_A          150 QDACEALKNWIKQNPKYKYLV  170 (365)
T ss_dssp             HHHHHHHHHHHHHCHHHHCC-
T ss_pred             HHHHHHHHHHHHhCccchHHH
Confidence            999999999999999866443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=8.2e-14  Score=114.41  Aligned_cols=99  Identities=18%  Similarity=0.130  Sum_probs=75.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++++|+++.++.+++.++. ..+++++|+.+|+++++++|+++.++..++.++.. .++++
T Consensus       245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~  322 (388)
T 1w3b_A          245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIE  322 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCHH
Confidence            35666777888888888888888888888888877775 67778888888888888777777777777777777 77777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      +|+++|++++++.|+++.++.
T Consensus       323 ~A~~~~~~al~~~p~~~~~~~  343 (388)
T 1w3b_A          323 EAVRLYRKALEVFPEFAAAHS  343 (388)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHH
T ss_pred             HHHHHHHHHHhcCCCcHHHHH
Confidence            777777777777777765543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.53  E-value=5.7e-14  Score=101.88  Aligned_cols=100  Identities=11%  Similarity=0.059  Sum_probs=93.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+.+|+++++.+|.++.++..++.++. ..+++++|+.+++++++++|+++.++..++.++.. .++++
T Consensus        16 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~   93 (186)
T 3as5_A           16 ISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQKYD   93 (186)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHH
Confidence            45677899999999999999999999999999999887 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+++|++++++.|+++.++..
T Consensus        94 ~A~~~~~~~~~~~~~~~~~~~~  115 (186)
T 3as5_A           94 LAVPLLIKVAEANPINFNVRFR  115 (186)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCcHhHHHHHH
Confidence            9999999999999999876643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.53  E-value=3.7e-14  Score=122.42  Aligned_cols=100  Identities=13%  Similarity=0.030  Sum_probs=93.7

Q ss_pred             chhhcCCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 046296           63 NYSNNNHGS-SSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH---  138 (167)
Q Consensus        63 ~~y~~~g~~-d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~---  138 (167)
                      .+|...+++ ++|+.+|+++++++|+++.+|+++|.++. ..+++++|+++|++|++++|+ +.++.++|.++.. +   
T Consensus       110 ~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~-~~~~  186 (474)
T 4abn_A          110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ-LQTD  186 (474)
T ss_dssp             HHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT-CCCS
T ss_pred             HHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH-hccC
Confidence            467778999 99999999999999999999999999987 899999999999999999999 7999999999999 9   


Q ss_pred             ------CCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          139 ------KDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       139 ------g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                            +++++|+++|++|++++|+++.++.++
T Consensus       187 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  219 (474)
T 4abn_A          187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL  219 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                  999999999999999999999877543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.53  E-value=1e-13  Score=110.44  Aligned_cols=99  Identities=13%  Similarity=0.041  Sum_probs=93.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+.+|+++++.+|+++.++..++.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .++++
T Consensus        11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~   88 (359)
T 3ieg_A           11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKLD   88 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCChH
Confidence            46788899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCC---CCHHHHH
Q 046296          143 RAESYFDQAVKSAP---DDWLNLI  163 (167)
Q Consensus       143 eA~~~~e~Al~l~P---~~~~~l~  163 (167)
                      +|+.+|+++++++|   +++.++.
T Consensus        89 ~A~~~~~~~~~~~~~~~~~~~~~~  112 (359)
T 3ieg_A           89 EAEDDFKKVLKSNPSEQEEKEAES  112 (359)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcccChHHHHH
Confidence            99999999999999   7776653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.52  E-value=7.1e-14  Score=108.64  Aligned_cols=98  Identities=12%  Similarity=0.212  Sum_probs=80.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++++|+++.++.+++.++. ..+++++|+.+|+++++++|.++.++.+++..++. .++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHH
Confidence            45777788888888888888888888888888888876 78888888888888888888888888888844444 56888


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +|+.+|+++++++|+++.++
T Consensus       160 ~A~~~~~~a~~~~p~~~~~~  179 (272)
T 3u4t_A          160 KADSSFVKVLELKPNIYIGY  179 (272)
T ss_dssp             HHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHhCccchHHH
Confidence            88888888888888887654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.52  E-value=9.6e-14  Score=112.15  Aligned_cols=99  Identities=11%  Similarity=-0.039  Sum_probs=87.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAE--------------------------------  110 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~--------------------------------  110 (167)
                      ..+...+++++|+..|+++++++|+++.+++++|.++. ..+++++|+                                
T Consensus       125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~  203 (287)
T 3qou_A          125 MQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP  203 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence            34567899999999999999999999999999999886 788887765                                


Q ss_pred             --HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 046296          111 --ELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD--WLNLI  163 (167)
Q Consensus       111 --~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~--~~~l~  163 (167)
                        +.|+++++++|+++.+++++|.++.. +|++++|+..|+++++++|++  ..++.
T Consensus       204 a~~~l~~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~  259 (287)
T 3qou_A          204 EIQQLQQQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAADGQTRX  259 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcccccccchHHH
Confidence              44566688899999999999999999 999999999999999999988  55443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.52  E-value=2.8e-13  Score=107.88  Aligned_cols=100  Identities=12%  Similarity=0.082  Sum_probs=91.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALL----LGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH  138 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~----l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~  138 (167)
                      ..|...+++++|+.+|+++++.+|+++..    +..++.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  319 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS-KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI-E  319 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-c
Confidence            45788899999999999999999999854    556888886 79999999999999999999999999999999999 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          139 KDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +++++|+.+|+++++++|+++.++..
T Consensus       320 g~~~~A~~~~~~a~~~~p~~~~~~~~  345 (359)
T 3ieg_A          320 EMYDEAIQDYEAAQEHNENDQQIREG  345 (359)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCChHHHHH
Confidence            99999999999999999999987654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.51  E-value=1.8e-13  Score=111.14  Aligned_cols=101  Identities=13%  Similarity=-0.042  Sum_probs=89.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYA--RFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA--~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      .+|.+.+++++|+..|+++++++|++.......+  .++. ..+++++|+.+|+++++.+|+++.+++++|.++.. +|+
T Consensus       138 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~-~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~  215 (291)
T 3mkr_A          138 QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA-GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGR  215 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCC
Confidence            5788899999999999999999999976554433  2222 34889999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          141 ASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +++|+++|++|++++|+++.++.++
T Consensus       216 ~~eA~~~l~~al~~~p~~~~~l~~l  240 (291)
T 3mkr_A          216 WEAAEGVLQEALDKDSGHPETLINL  240 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999999999988765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.51  E-value=2.8e-13  Score=101.48  Aligned_cols=88  Identities=19%  Similarity=0.209  Sum_probs=54.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH-KDAS  142 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~-g~~~  142 (167)
                      .|...+++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+|+++++++|+++.++..++.++.. . ++++
T Consensus        17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~   94 (225)
T 2vq2_A           17 EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPA   94 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCCHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCcHH
Confidence            3445566666666666666666666666666666554 56666666666666666666666666666666665 6 6666


Q ss_pred             HHHHHHHHHHH
Q 046296          143 RAESYFDQAVK  153 (167)
Q Consensus       143 eA~~~~e~Al~  153 (167)
                      +|+.+|+++++
T Consensus        95 ~A~~~~~~~~~  105 (225)
T 2vq2_A           95 ESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            66666666666

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.51  E-value=2.5e-13  Score=107.31  Aligned_cols=95  Identities=14%  Similarity=0.173  Sum_probs=49.4

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      |...+++++|+.+|+++++.+|+++.++..++.++. ..+++++|+.+++++++++|+++.++..++.++.. .+++++|
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A  225 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEA  225 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHH
Confidence            334445555555555555555555555555555443 45555555555555555555555555555555555 5555555


Q ss_pred             HHHHHHHHHhCCCCHHH
Q 046296          145 ESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~  161 (167)
                      +.+|++++++.|+++.+
T Consensus       226 ~~~~~~a~~~~~~~~~~  242 (327)
T 3cv0_A          226 LDAYNRALDINPGYVRV  242 (327)
T ss_dssp             HHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHcCCCCHHH
Confidence            55555555555554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.50  E-value=2.9e-13  Score=101.45  Aligned_cols=97  Identities=14%  Similarity=0.081  Sum_probs=65.3

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCC
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR-GDFAKAEELCGRAIL--ANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~-gd~e~A~~~~~rAl~--l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      +|...+++++|+.+|+++++++|+++.++..++.++. .. +++++|+.+|+++++  .+|.++.++..++.++.. .++
T Consensus        51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~  128 (225)
T 2vq2_A           51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QGQ  128 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TTC
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cCC
Confidence            4555666777777777777777777777777766665 56 677777777777766  555556666667776666 677


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH
Q 046296          141 ASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +++|+.+|+++++..|+++.++
T Consensus       129 ~~~A~~~~~~~~~~~~~~~~~~  150 (225)
T 2vq2_A          129 FGLAEAYLKRSLAAQPQFPPAF  150 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCchHH
Confidence            7777777777777777665544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.50  E-value=3.1e-14  Score=128.29  Aligned_cols=99  Identities=9%  Similarity=-0.036  Sum_probs=82.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+..|+++++++|+++.+++++|.++. ..+++++|++.|++|++++|+++.++.++|.++.. +++++
T Consensus       441 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g~~~  518 (681)
T 2pzi_A          441 RALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AGNTD  518 (681)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCCC
T ss_pred             HHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChH
Confidence            45667788888888888888888888888888888876 78888888888888888888888888888888888 88888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      + +++|++|++++|+++.++.+
T Consensus       519 ~-~~~~~~al~~~P~~~~a~~~  539 (681)
T 2pzi_A          519 E-HKFYQTVWSTNDGVISAAFG  539 (681)
T ss_dssp             T-TCHHHHHHHHCTTCHHHHHH
T ss_pred             H-HHHHHHHHHhCCchHHHHHH
Confidence            8 88888888888888776654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.50  E-value=2.8e-13  Score=104.28  Aligned_cols=94  Identities=18%  Similarity=0.230  Sum_probs=44.7

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL--ANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~--l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      |...+++++|+.+|+++++++|.++.++..++.++. ..+++++|+++|+++++  .+|.++.++..++.+++. .++++
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~  158 (252)
T 2ho1_A           81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MKKPA  158 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cCCHH
Confidence            334444444444444444444444444444444443 34444444444444444  444444444444444444 44444


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q 046296          143 RAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~  160 (167)
                      +|+.+|++++++.|.++.
T Consensus       159 ~A~~~~~~~~~~~~~~~~  176 (252)
T 2ho1_A          159 QAKEYFEKSLRLNRNQPS  176 (252)
T ss_dssp             HHHHHHHHHHHHCSCCHH
T ss_pred             HHHHHHHHHHhcCcccHH
Confidence            444444444444444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.49  E-value=1.9e-14  Score=129.70  Aligned_cols=99  Identities=11%  Similarity=-0.034  Sum_probs=94.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+..|++|++++|+++.+++++|.++. ..+++++ +++|++|++++|+++.+++++|.++.. +|+++
T Consensus       475 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~-~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~  551 (681)
T 2pzi_A          475 VAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAE-LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA-EGDRV  551 (681)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH-cCCHH
Confidence            46788899999999999999999999999999999987 8999999 999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+++|++|++++|+++.++.+
T Consensus       552 ~A~~~~~~al~l~P~~~~a~~~  573 (681)
T 2pzi_A          552 GAVRTLDEVPPTSRHFTTARLT  573 (681)
T ss_dssp             HHHHHHHTSCTTSTTHHHHHHH
T ss_pred             HHHHHHHhhcccCcccHHHHHH
Confidence            9999999999999999877754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=109.26  Aligned_cols=100  Identities=16%  Similarity=0.137  Sum_probs=93.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEAN---------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~---------P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      .+|...+++++|+.+|++++++.         |.++.++.+++.++. ..+++++|+.+|+++++++|+++.++..+|.+
T Consensus       201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~  279 (330)
T 3hym_B          201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR-KLKKYAEALDYHRQALVLIPQNASTYSAIGYI  279 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence            46778899999999999999997         778899999999987 89999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          134 IWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       134 l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +.. ++++++|+.+|+++++++|+++.++..
T Consensus       280 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~  309 (330)
T 3hym_B          280 HSL-MGNFENAVDYFHTALGLRRDDTFSVTM  309 (330)
T ss_dssp             HHH-HTCHHHHHHHHHTTTTTCSCCHHHHHH
T ss_pred             HHH-hccHHHHHHHHHHHHccCCCchHHHHH
Confidence            999 999999999999999999999976644

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.49  E-value=6.1e-13  Score=102.41  Aligned_cols=97  Identities=18%  Similarity=0.090  Sum_probs=64.7

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      +|...+++++|+.+|+++++++|.++.++..++.++. ..+++++|+.+|+++++.+|.++.++..++.++.. .+++++
T Consensus       150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~  227 (252)
T 2ho1_A          150 VSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY-KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV-FEDRDT  227 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-ccCHHH
Confidence            4555666666666666666666666666666666665 56666666666666666666666666666666666 666666


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q 046296          144 AESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l  162 (167)
                      |++++++++++.|+++.+.
T Consensus       228 A~~~~~~~~~~~p~~~~~~  246 (252)
T 2ho1_A          228 AASYGLQLKRLYPGSLEYQ  246 (252)
T ss_dssp             HHHHHHHHHHHCTTSHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHH
Confidence            6666666666666666544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.49  E-value=2.8e-13  Score=107.13  Aligned_cols=97  Identities=16%  Similarity=0.073  Sum_probs=59.2

Q ss_pred             hhhcCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           64 YSNNNH-GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        64 ~y~~~g-~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      +|...+ ++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+|++++++.|++..++..++.++.. .++++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~  176 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-TNNSK  176 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HhhHH
Confidence            344445 5666666666666666666666666666554 56666666666666666666666666666666665 66666


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +|+.+|++++++.|+++.++
T Consensus       177 ~A~~~~~~al~~~~~~~~~~  196 (330)
T 3hym_B          177 LAERFFSQALSIAPEDPFVM  196 (330)
T ss_dssp             HHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHH
Confidence            66666666666666665444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.49  E-value=2.5e-13  Score=102.46  Aligned_cols=92  Identities=11%  Similarity=0.033  Sum_probs=85.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|...+++++|+.+|++++  +| ++.++++++.++. ..+++++|+.+|++|++++|+++.++.++|.+++. +++++
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~   88 (213)
T 1hh8_A           14 VLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYD   88 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHH
Confidence            46778899999999999996  44 7899999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 046296          143 RAESYFDQAVKSAPDDW  159 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~  159 (167)
                      +|+++|++++++.|.++
T Consensus        89 ~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHHhCCCcc
Confidence            99999999999999866

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.49  E-value=3.7e-13  Score=111.73  Aligned_cols=95  Identities=14%  Similarity=0.061  Sum_probs=91.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|.+.+++++|+.+|+++++.+|+++.+++.++.++. ..+++++|+.+|+++++++|+++.++..++.++.. +++++
T Consensus        34 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~  111 (450)
T 2y4t_A           34 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QGKLD  111 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHH
Confidence            46788899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 046296          143 RAESYFDQAVKSAPDDW  159 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~  159 (167)
                      +|+.+|+++++++|+++
T Consensus       112 ~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A          112 EAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHhcCCCCh
Confidence            99999999999999987

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.49  E-value=3.7e-13  Score=108.65  Aligned_cols=99  Identities=9%  Similarity=-0.048  Sum_probs=92.8

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +..|...+++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+|+++++++|+++.++..++.++.. ++++
T Consensus        71 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~  148 (368)
T 1fch_A           71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQ  148 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCH
Confidence            356778899999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHH
Q 046296          142 SRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ++|+.+|++++++.|+++.++
T Consensus       149 ~~A~~~~~~~~~~~~~~~~~~  169 (368)
T 1fch_A          149 RQACEILRDWLRYTPAYAHLV  169 (368)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGC
T ss_pred             HHHHHHHHHHHHhCcCcHHHH
Confidence            999999999999999876543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.48  E-value=4.3e-13  Score=105.91  Aligned_cols=94  Identities=18%  Similarity=0.100  Sum_probs=89.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++.+|+++.++..++.++. ..+++++|+.+|+++++++|+++.++..++.++.. +++++
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g~~~  257 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN-MSQYD  257 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hccHH
Confidence            46788899999999999999999999999999999987 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 046296          143 RAESYFDQAVKSAPDD  158 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~  158 (167)
                      +|+++|++++++.|++
T Consensus       258 ~A~~~~~~a~~~~~~~  273 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGG  273 (327)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            9999999999999874

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=1.5e-13  Score=106.84  Aligned_cols=96  Identities=9%  Similarity=0.041  Sum_probs=58.1

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcC
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD----GNILSLYADLIWQAHK  139 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~----~~al~~lA~~l~~~~g  139 (167)
                      .|+..+++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+|+++++ .|.+    +.++..+|.++.. .+
T Consensus        12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~~   88 (272)
T 3u4t_A           12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-KG   88 (272)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-TT
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-cc
Confidence            4555566666666666666666666666666666554 56666666666666666 3332    2235566666666 66


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH
Q 046296          140 DASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ++++|+++|+++++++|+++.++
T Consensus        89 ~~~~A~~~~~~a~~~~~~~~~~~  111 (272)
T 3u4t_A           89 QDSLAIQQYQAAVDRDTTRLDMY  111 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTHHH
T ss_pred             cHHHHHHHHHHHHhcCcccHHHH
Confidence            66666666666666666655444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.48  E-value=1.3e-13  Score=106.74  Aligned_cols=98  Identities=15%  Similarity=0.091  Sum_probs=89.5

Q ss_pred             hhcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 046296           65 SNNNHGSSSTDAYNEKMIEA----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l----~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~  140 (167)
                      +...+++++|+.+|+++++.    +|.++.+++.++.++. ..+++++|+.+|+++++++|+++.++..+|.++.. .++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~   92 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGN   92 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTC
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccC
Confidence            34567899999999999998    4567889999999987 89999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          141 ASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +++|+.+|+++++++|+++.++.+
T Consensus        93 ~~~A~~~~~~al~~~~~~~~~~~~  116 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPTYNYAHLN  116 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccHHHHH
Confidence            999999999999999998876643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.46  E-value=3.5e-13  Score=105.72  Aligned_cols=93  Identities=16%  Similarity=-0.006  Sum_probs=56.1

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPGDGNIL-----  127 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~--------~gd~e~A~~~~~rAl~l~P~~~~al-----  127 (167)
                      +|+..+++++|+..|+++++++|++   +.+++.++.++. .        .+++++|+..|+++++.+|+++.+.     
T Consensus        61 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  139 (261)
T 3qky_A           61 AYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQK  139 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHH
Confidence            4555566666666666666665543   445556665554 4        5666666666666666666655444     


Q ss_pred             ------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          128 ------------SLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       128 ------------~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                                  +.+|.+++. ++++++|+.+|+++++..|++
T Consensus       140 ~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          140 IRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCC
Confidence                        555666666 666666666666666666654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.46  E-value=6.4e-13  Score=110.25  Aligned_cols=101  Identities=12%  Similarity=0.069  Sum_probs=92.8

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNAL----LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQA  137 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~----~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~  137 (167)
                      +.+|...+++++|+.+|+++++++|+++.    ++..++.++. ..+++++|+.+|+++++++|+++.++..++.++.. 
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-  341 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS-KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI-  341 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence            35677889999999999999999999965    7788898886 79999999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          138 HKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       138 ~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++++++|+.+|+++++++|+++.++..
T Consensus       342 ~~~~~~A~~~~~~al~~~p~~~~~~~~  368 (450)
T 2y4t_A          342 EEMYDEAIQDYETAQEHNENDQQIREG  368 (450)
T ss_dssp             TTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence            999999999999999999999877543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.46  E-value=5.7e-13  Score=116.21  Aligned_cols=99  Identities=11%  Similarity=0.015  Sum_probs=93.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---C
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH---K  139 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~---g  139 (167)
                      .+|...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+++|+++++++|+++.++.+++.++.. +   +
T Consensus        65 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~g  142 (568)
T 2vsy_A           65 RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWR  142 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCT
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hhccc
Confidence            46788899999999999999999999999999999987 89999999999999999999999999999999999 9   9


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          140 DASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ++++|+++|+++++.+|++...+.
T Consensus       143 ~~~~A~~~~~~al~~~p~~~~~~~  166 (568)
T 2vsy_A          143 ALDVLSAQVRAAVAQGVGAVEPFA  166 (568)
T ss_dssp             THHHHHHHHHHHHHHTCCCSCHHH
T ss_pred             cHHHHHHHHHHHHhcCCcccChHH
Confidence            999999999999999998765443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.44  E-value=1.9e-13  Score=93.93  Aligned_cols=73  Identities=12%  Similarity=0.109  Sum_probs=67.1

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           84 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus        84 l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      .+|+++.+++++|.++. ..+++++|+.+|++|++++|+++.++.++|.++.. ++++++|+.+|++++++.|.+
T Consensus         2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcC
Confidence            58999999999999987 89999999999999999999999999999999999 999999999999999997743

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.44  E-value=2.9e-14  Score=96.95  Aligned_cols=86  Identities=14%  Similarity=0.082  Sum_probs=70.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~lA~~l~~  136 (167)
                      ..|+..+++++|+.+|+++++++|+++.++++++.++. ..+++++|+++|+++++++|++      +.++..++.++..
T Consensus        12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~   90 (111)
T 2l6j_A           12 NSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA   90 (111)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence            45677788888888888888888888888888888876 7888888888888888888888      8888888888887


Q ss_pred             HcCCHHHHHHHHHH
Q 046296          137 AHKDASRAESYFDQ  150 (167)
Q Consensus       137 ~~g~~~eA~~~~e~  150 (167)
                       .+++++|+..|++
T Consensus        91 -~~~~~~a~~~~~~  103 (111)
T 2l6j_A           91 -VGSVQIPVVEVDE  103 (111)
T ss_dssp             -HHCCCCCSSSSSS
T ss_pred             -HHhHhhhHhHHHH
Confidence             7777777666554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.43  E-value=1.3e-12  Score=110.61  Aligned_cols=100  Identities=15%  Similarity=0.114  Sum_probs=86.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+|+++++++|+++.++..++.+++. .++++
T Consensus       284 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~  361 (537)
T 3fp2_A          284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFT  361 (537)
T ss_dssp             HHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            35667788999999999999999999999999998886 78899999999999999999999999999999888 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+.+|++++++.|+++.++.+
T Consensus       362 ~A~~~~~~~~~~~~~~~~~~~~  383 (537)
T 3fp2_A          362 ESEAFFNETKLKFPTLPEVPTF  383 (537)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHH
Confidence            9999999999999988766543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.43  E-value=3.2e-13  Score=100.73  Aligned_cols=93  Identities=12%  Similarity=-0.054  Sum_probs=72.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH----------------------------------
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKA----------------------------------  109 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A----------------------------------  109 (167)
                      .+...+++++|+..|+++++++|+++.++++++.++. ..+++++|                                  
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a   93 (176)
T 2r5s_A           15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPE   93 (176)
T ss_dssp             HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchH
Confidence            4556677777777777777777777777777777664 45555444                                  


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          110 EELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       110 ~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      +..|+++++++|+++.+++++|.++.. .|++++|+.+|+++++++|+.
T Consensus        94 ~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A           94 LKRLEQELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCccc
Confidence            556667778889999999999999998 999999999999999999875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.43  E-value=1.1e-13  Score=103.25  Aligned_cols=75  Identities=16%  Similarity=0.031  Sum_probs=65.1

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296           85 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus        85 ~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ||.....++.++..+. ..+++++|+..|+++++++|+++.++..+|.++.. +|++++|+.+|+++++++| ++.+.
T Consensus         2 ~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~~~~a~~~~p-~~~~~   76 (176)
T 2r5s_A            2 NASPDEQLLKQVSELL-QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE-TKQFELAQELLATIPLEYQ-DNSYK   76 (176)
T ss_dssp             ----CTTHHHHHHHHH-HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-TTCHHHHHHHHTTCCGGGC-CHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHhhhccC-ChHHH
Confidence            4555566778888886 79999999999999999999999999999999999 9999999999999999999 77543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.43  E-value=1.8e-12  Score=85.05  Aligned_cols=77  Identities=18%  Similarity=0.260  Sum_probs=67.7

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296           87 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus        87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      .++.+++.++.++. ..+++++|+.+|+++++++|+++.++..+|.+++. .+++++|+.+|+++++++|+++.++.++
T Consensus         7 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l   83 (91)
T 1na3_A            7 NSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNL   83 (91)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            46788888898886 78999999999999999999999999999999998 9999999999999999999988776543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.4e-12  Score=109.36  Aligned_cols=95  Identities=15%  Similarity=0.057  Sum_probs=89.7

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +..|++.+++++|+.+|+++++.+| ++.++..++.++. ..+++++|+.+|+++++++|+++.++..+|.++.. ++++
T Consensus        13 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~   89 (514)
T 2gw1_A           13 GNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYV-SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG-LGKF   89 (514)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHH-HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HhhH
Confidence            3568889999999999999999999 6999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 046296          142 SRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~  159 (167)
                      ++|+..|++++++.|.+.
T Consensus        90 ~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           90 ADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HHHHHHHHHHHHSSSCCG
T ss_pred             HHHHHHHHHHHhcCCCcc
Confidence            999999999999999664

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.42  E-value=1.4e-13  Score=92.73  Aligned_cols=87  Identities=14%  Similarity=0.096  Sum_probs=77.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~-~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      ..|...+++++|+.+|+++++++|+++. +++++|.++. ..+++++|+++|+++++++|+++.++.+         +.+
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~---------~~~   77 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR---------KMV   77 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH---------HHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH---------HHH
Confidence            4677889999999999999999999999 9999999887 7999999999999999999999887643         456


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 046296          142 SRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~  159 (167)
                      .+|+.+|++++.++|+++
T Consensus        78 ~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           78 MDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHhccCcccc
Confidence            788999999999988764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.41  E-value=2.7e-12  Score=110.39  Aligned_cols=100  Identities=12%  Similarity=0.074  Sum_probs=92.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA------NPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIW  135 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l------~P~n-~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~  135 (167)
                      .+|.+.+++++|+.+|++++++      +|++ +.++..++.++. ..+++++|+++|+++++++|+++.++..++.++.
T Consensus       483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  561 (597)
T 2xpi_A          483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR-KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL  561 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            4677889999999999999999      6765 789999999987 8999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          136 QAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       136 ~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      . .|++++|+++|+++++++|+++.++..
T Consensus       562 ~-~g~~~~A~~~~~~~l~~~p~~~~~~~~  589 (597)
T 2xpi_A          562 H-KKIPGLAITHLHESLAISPNEIMASDL  589 (597)
T ss_dssp             H-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             H-hCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence            9 999999999999999999999876644

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.41  E-value=9.5e-13  Score=106.48  Aligned_cols=95  Identities=12%  Similarity=0.076  Sum_probs=41.2

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~-~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      +.+++++|+..|+++|+++|.++. +|.+++.++. ..+++++|+..|++|++++|.++.++..++.+.+...+++++|+
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            344445555555555555554443 4444444443 34444444444444444444443333333332221124444444


Q ss_pred             HHHHHHHHhCCCCHHHH
Q 046296          146 SYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       146 ~~~e~Al~l~P~~~~~l  162 (167)
                      ++|++++++.|+++.++
T Consensus       190 ~~~~~al~~~p~~~~~~  206 (308)
T 2ond_A          190 KIFELGLKKYGDIPEYV  206 (308)
T ss_dssp             HHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCCCcHHHH
Confidence            44444444444444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.41  E-value=7.3e-13  Score=103.87  Aligned_cols=93  Identities=16%  Similarity=0.107  Sum_probs=84.9

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLL-----------------GNYARFLKEVRGDFAKAEELCGRAILANPG---DGNIL  127 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l-----------------~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~---~~~al  127 (167)
                      .+++++|+..|+++++.+|+++.+.                 +.+|.++. ..+++++|+..|+++++..|+   .+.++
T Consensus       110 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~a~  188 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE-RRELYEAAAVTYEAVFDAYPDTPWADDAL  188 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCCchHHHHH
Confidence            7899999999999999999997766                 78898886 899999999999999999998   56799


Q ss_pred             HHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          128 SLYADLIWQAH----------KDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       128 ~~lA~~l~~~~----------g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ..++.++.. +          +++++|+.+|+++++..|+++.+.
T Consensus       189 ~~l~~~~~~-~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  232 (261)
T 3qky_A          189 VGAMRAYIA-YAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR  232 (261)
T ss_dssp             HHHHHHHHH-HHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHH-hcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence            999999987 6          999999999999999999997544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.41  E-value=6.2e-13  Score=112.51  Aligned_cols=97  Identities=16%  Similarity=0.094  Sum_probs=84.0

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +..|++++++++|+.+|+++++++|+++.++++++.++. ..+++++|+..|+++++++|+++.++..+|.++.. ++++
T Consensus        32 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~  109 (537)
T 3fp2_A           32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI-STGDLEKVIEFTTKALEIKPDHSKALLRRASANES-LGNF  109 (537)
T ss_dssp             HHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-cCCH
Confidence            357888999999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHH
Q 046296          142 SRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~  161 (167)
                      ++|+..|+ ++.++|+....
T Consensus       110 ~~A~~~~~-~~~~~~~~~~~  128 (537)
T 3fp2_A          110 TDAMFDLS-VLSLNGDFDGA  128 (537)
T ss_dssp             HHHHHHHH-HHC--------
T ss_pred             HHHHHHHH-HHhcCCCCChH
Confidence            99999995 89888876643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=2.7e-12  Score=90.02  Aligned_cols=77  Identities=16%  Similarity=0.052  Sum_probs=71.6

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296           86 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus        86 P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      |..+..+..+|..+. ..+++++|+.+|++|++++|+++.++.++|.+++. ++++++|+.+|+++++++|+++.++.+
T Consensus         1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~   77 (126)
T 3upv_A            1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIR   77 (126)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            456788999999887 89999999999999999999999999999999999 999999999999999999999877654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.40  E-value=3.5e-12  Score=91.74  Aligned_cols=90  Identities=14%  Similarity=-0.022  Sum_probs=81.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL--IWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~--l~~~~g~  140 (167)
                      .+|...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|+++++++|+++.++..++.+  +.. .++
T Consensus        55 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~-~~~  132 (166)
T 1a17_A           55 LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-QKA  132 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHH
Confidence            46778899999999999999999999999999999987 89999999999999999999999998666555  777 899


Q ss_pred             HHHHHHHHHHHHHh
Q 046296          141 ASRAESYFDQAVKS  154 (167)
Q Consensus       141 ~~eA~~~~e~Al~l  154 (167)
                      +++|+++++++..+
T Consensus       133 ~~~A~~~~~~~~~~  146 (166)
T 1a17_A          133 FERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHcccchHHH
Confidence            99999999998765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.40  E-value=1.5e-12  Score=100.81  Aligned_cols=71  Identities=13%  Similarity=-0.005  Sum_probs=35.0

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN---ILSLYADLIW  135 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~---al~~lA~~l~  135 (167)
                      .++..+++++|+..|+++++..|+++   .+++.+|.++. ..+++++|+..|+++++++|+++.   +++.+|.+++
T Consensus        13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~   89 (225)
T 2yhc_A           13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM   89 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence            34444555555555555555555442   34555555444 455555555555555555555432   4444444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.39  E-value=1.1e-12  Score=101.55  Aligned_cols=71  Identities=11%  Similarity=-0.022  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus        88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      ++..++++|..+. ..+++++|+..|+++++..|+++   .+++.+|.+++. ++++++|+..|++++++.|+++.
T Consensus         3 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A            3 PPNEIYATAQQKL-QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCc
Confidence            5778889998886 79999999999999999999874   789999999999 99999999999999999999875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.39  E-value=4.6e-12  Score=106.08  Aligned_cols=101  Identities=12%  Similarity=0.038  Sum_probs=85.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA---------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PGDGN  125 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l---------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--------P~~~~  125 (167)
                      .+|..+|++++|+.+|++|+++         +|....++.++|.++. .++++++|+.+|++++++.        +..+.
T Consensus        59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~  137 (472)
T 4g1t_A           59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE  137 (472)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence            4677889999999999999987         7888899999999887 7999999999999999873        45678


Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          126 ILSLYADLIWQA-HKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       126 al~~lA~~l~~~-~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++.++++++... .++|++|+.+|++|++++|+++.++.+
T Consensus       138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~  177 (472)
T 4g1t_A          138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG  177 (472)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            888888877651 346899999999999999999876644

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.39  E-value=2.1e-12  Score=104.46  Aligned_cols=90  Identities=18%  Similarity=0.202  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHH
Q 046296           71 SSSTDAYNEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN-ILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        71 ~d~A~~~~~kAL~-l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~-al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      +++|+..|++|++ ++|+++.+|.+++.++. ..+++++|++.|++||+++|.++. +|..++.++.. ++++++|+.+|
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~  157 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            3999999999999 79999999999999886 899999999999999999999987 99999999998 99999999999


Q ss_pred             HHHHHhCCCCHHHH
Q 046296          149 DQAVKSAPDDWLNL  162 (167)
Q Consensus       149 e~Al~l~P~~~~~l  162 (167)
                      ++|+++.|.+..++
T Consensus       158 ~~a~~~~p~~~~~~  171 (308)
T 2ond_A          158 KKAREDARTRHHVY  171 (308)
T ss_dssp             HHHHTSTTCCTHHH
T ss_pred             HHHHhcCCCCHHHH
Confidence            99999999876554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.38  E-value=4.7e-12  Score=83.05  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=69.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~  136 (167)
                      ..|...+++++|+.+|+++++++|+++.++.+++.++. ..+++++|+.+|+++++++|+++.++.+++.++..
T Consensus        17 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999999876

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.38  E-value=5.3e-12  Score=108.55  Aligned_cols=99  Identities=16%  Similarity=0.031  Sum_probs=83.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+.+++++|+.+|+++++++|+++.+|+.++.++. ..+++++|+++|++++++.|+++.++..++.++.. .++++
T Consensus       381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~  458 (597)
T 2xpi_A          381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNIL  458 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHH
Confidence            45677788888888888888888888888888888776 78888888888888888888888888888888888 88888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      +|+++|++++++.|+++.++.
T Consensus       459 ~A~~~~~~~~~~~~~~~~~~~  479 (597)
T 2xpi_A          459 LANEYLQSSYALFQYDPLLLN  479 (597)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHH
Confidence            888888888888888876653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.38  E-value=8.1e-12  Score=87.85  Aligned_cols=80  Identities=18%  Similarity=0.059  Sum_probs=73.4

Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296           83 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus        83 ~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ..+|.++..++.++.++. ..+++++|+.+|+++++++|+++.++.++|.+++. ++++++|+.+|+++++++|+++.++
T Consensus         3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~   80 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH   80 (137)
T ss_dssp             ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHH
Confidence            467899999999999987 89999999999999999999999999999999999 9999999999999999999998776


Q ss_pred             Hh
Q 046296          163 IK  164 (167)
Q Consensus       163 ~~  164 (167)
                      .+
T Consensus        81 ~~   82 (137)
T 3q49_B           81 FF   82 (137)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.36  E-value=2e-12  Score=108.33  Aligned_cols=100  Identities=17%  Similarity=0.087  Sum_probs=88.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNAL------LLGNYARFLKEV---RGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~------~l~~lA~~l~~~---~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      .+|...+++++|+.+|+++++++|+++.      ++..++.++. .   .+++++|+.+|+++++++|+++.++..++.+
T Consensus       380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  458 (514)
T 2gw1_A          380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM  458 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            4577788999999999999999888865      8888888886 7   7999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          134 IWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       134 l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +.. ++++++|+.+|+++++++|+++.++..
T Consensus       459 ~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~  488 (514)
T 2gw1_A          459 KLQ-QEDIDEAITLFEESADLARTMEEKLQA  488 (514)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred             HHH-hcCHHHHHHHHHHHHHhccccHHHHHH
Confidence            998 999999999999999999998877654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.36  E-value=3.2e-12  Score=85.79  Aligned_cols=79  Identities=10%  Similarity=0.091  Sum_probs=73.8

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 046296           84 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD--DWLN  161 (167)
Q Consensus        84 l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~--~~~~  161 (167)
                      ++|+++.++..++.++. ..+++++|+.+|+++++++|.++.++..+|.+++. ++++++|+++|+++++++|+  ++.+
T Consensus         1 l~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~   78 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDV   78 (112)
T ss_dssp             CCCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred             CCCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHH
Confidence            47999999999999887 79999999999999999999999999999999999 99999999999999999999  8876


Q ss_pred             HHh
Q 046296          162 LIK  164 (167)
Q Consensus       162 l~~  164 (167)
                      +.+
T Consensus        79 ~~~   81 (112)
T 2kck_A           79 WAA   81 (112)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.35  E-value=1.2e-12  Score=105.53  Aligned_cols=96  Identities=14%  Similarity=0.075  Sum_probs=81.5

Q ss_pred             chhhcC-CChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHH
Q 046296           63 NYSNNN-HGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN-------ILS  128 (167)
Q Consensus        63 ~~y~~~-g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~-------al~  128 (167)
                      .+|... +++++|+.+|++|+++.|.+      +.++.+++.++. ..+++++|+.+|+++++++|++..       ++.
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA-LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            467776 99999999999999999865      567899999987 899999999999999999998754       578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296          129 LYADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       129 ~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      +++.++.. ++++++|+.+|+++++++|+.+.
T Consensus       204 ~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          204 KKGLCQLA-ATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCC
Confidence            89999999 99999999999999999998654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.35  E-value=2.4e-12  Score=103.71  Aligned_cols=96  Identities=19%  Similarity=0.076  Sum_probs=81.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVR-GDFAKAEELCGRAILANPGD------GNILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~-gd~e~A~~~~~rAl~l~P~~------~~al~~  129 (167)
                      .+|...+++++|+.+|++|+++.|..      +.++.+++.++. .. +++++|+.+|++|+++.|.+      +.++.+
T Consensus        85 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  163 (292)
T 1qqe_A           85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK  163 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            46777889999999999999988754      567888898876 65 99999999999999998854      567888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      +|.++.. ++++++|+.+|++++++.|+++.
T Consensus       164 lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          164 CADLKAL-DGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHH-hCCHHHHHHHHHHHHHHHhcCCc
Confidence            9999998 99999999999999999887653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.35  E-value=7.3e-12  Score=91.93  Aligned_cols=79  Identities=18%  Similarity=0.093  Sum_probs=73.2

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296           85 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus        85 ~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|.++.+++.++.++. ..+++++|+.+|++||+++|+++.++.++|.+++. ++++++|+.+|+++++++|+++.++.+
T Consensus         7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4667888999999887 89999999999999999999999999999999999 999999999999999999999987754


Q ss_pred             c
Q 046296          165 L  165 (167)
Q Consensus       165 y  165 (167)
                      +
T Consensus        85 l   85 (164)
T 3sz7_A           85 L   85 (164)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.34  E-value=6.5e-12  Score=103.88  Aligned_cols=90  Identities=11%  Similarity=0.020  Sum_probs=83.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+.+++++|+.+|+++|+++|+++.+++++|.++. ..+++++|+.+|++|++++|+++.++.+++.++.. +++++
T Consensus       204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~-~~~~~  281 (336)
T 1p5q_A          204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR-IRRQL  281 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHH
Confidence            46788899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HH-HHHHHHHHHh
Q 046296          143 RA-ESYFDQAVKS  154 (167)
Q Consensus       143 eA-~~~~e~Al~l  154 (167)
                      +| ...|++++..
T Consensus       282 ~a~~~~~~~~~~~  294 (336)
T 1p5q_A          282 AREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            98 5677777764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.34  E-value=9.2e-12  Score=84.33  Aligned_cols=69  Identities=14%  Similarity=0.036  Sum_probs=65.7

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus        88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      ++.++.++|.++. ..+++++|+.+|++|++++|+++.++.++|.+++. ++++++|+++|+++++++|++
T Consensus         3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCc
Confidence            4678889999887 79999999999999999999999999999999999 999999999999999999998

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.33  E-value=1.9e-12  Score=92.58  Aligned_cols=71  Identities=17%  Similarity=0.216  Sum_probs=65.8

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296           87 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus        87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      +.+.++.++|..++ ..+++++|+.+|++||+++|+++.++.++|.+++. ++++++|+..|++||+++|+++
T Consensus         6 d~A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            6 DAAIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccc
Confidence            34567889999997 89999999999999999999999999999999999 9999999999999999988764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.31  E-value=3e-12  Score=98.53  Aligned_cols=90  Identities=23%  Similarity=0.310  Sum_probs=82.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPGDGNI  126 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l--------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------~P~~~~a  126 (167)
                      .+|...+++++|+.+|++++++        +|..+.++.+++.++. ..+++++|+.+|++|+++        +|....+
T Consensus        51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  129 (283)
T 3edt_B           51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ  129 (283)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            5678889999999999999998        4667788999999887 899999999999999998        5778899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      +.++|.+++. ++++++|+.+|++++++
T Consensus       130 ~~~la~~~~~-~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          130 LNNLALLCQN-QGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence            9999999999 99999999999999998

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.30  E-value=1.4e-12  Score=108.18  Aligned_cols=97  Identities=11%  Similarity=-0.004  Sum_probs=52.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+.+++++|+.+|+++|+++|+++.+++++|.++. ..+++++|+.+|++|++++|+++.++..++.+.....+..+
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC------------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999988555367888


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q 046296          143 RAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~  160 (167)
                      ++..+|++++.+.|+++.
T Consensus       317 ~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          317 KQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHhhCCCCCCCC
Confidence            999999999999998764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.30  E-value=2.4e-11  Score=101.71  Aligned_cols=96  Identities=17%  Similarity=0.202  Sum_probs=68.2

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--Hc--------------------------------------CCH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKE--VR--------------------------------------GDF  106 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~--~~--------------------------------------gd~  106 (167)
                      .++++++|+.+|++|++++|+++.++.+++.++..  ..                                      +++
T Consensus       150 ~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~  229 (472)
T 4g1t_A          150 GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEE  229 (472)
T ss_dssp             CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------
T ss_pred             ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHH
Confidence            34678999999999999999999988887765421  12                                      344


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          107 AKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       107 e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ++|+++|++++.++|+++.++.++|.++.. .+++++|+.+|++|++++|+++.++.
T Consensus       230 ~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~  285 (472)
T 4g1t_A          230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLHC  285 (472)
T ss_dssp             CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHhCCChHHHHH
Confidence            556666666666666677777777777776 77777777777777777777776553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.30  E-value=2.7e-11  Score=85.98  Aligned_cols=73  Identities=11%  Similarity=-0.064  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296           91 LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus        91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      .++.+|..+. ..+++++|+..|++|++++|+++.+++.+|.++.. .+++++|+.+|++|++++|+++.++.++
T Consensus        19 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~l   91 (121)
T 1hxi_A           19 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAAL   91 (121)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3567788776 79999999999999999999999999999999999 9999999999999999999999877543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.30  E-value=1.6e-11  Score=84.83  Aligned_cols=73  Identities=19%  Similarity=0.056  Sum_probs=68.2

Q ss_pred             CCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296           85 NPGNALLLGNYARFLKEVRGD---FAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus        85 ~P~n~~~l~~lA~~l~~~~gd---~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      +|+++.++..+|.+++ ..++   .++|+.++++||+++|+++.+++.+|.++++ .++|++|+.+|+++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~-~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLY-YLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHH-HTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence            7999999999999997 4554   7999999999999999999999999999999 9999999999999999999854

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.26  E-value=8.6e-12  Score=95.98  Aligned_cols=92  Identities=16%  Similarity=0.188  Sum_probs=84.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPGDGNI  126 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l--------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------~P~~~~a  126 (167)
                      .+|...+++++|+.+|++++++        +|..+.++.+++.++. ..+++++|+.+|++++++        +|....+
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            4678889999999999999999        5777889999999987 799999999999999999        7888899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      +.++|.++.. ++++++|+.+|++++++.|
T Consensus       172 ~~~la~~~~~-~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          172 KNNLASCYLK-QGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Confidence            9999999999 9999999999999999844

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.26  E-value=2.6e-12  Score=111.49  Aligned_cols=94  Identities=14%  Similarity=-0.007  Sum_probs=83.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL--IWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~--l~~~~g~  140 (167)
                      .+|.+++++++|+.+|++|++++|+++.+++++|.++. ..+++++|+++|++|++++|+++.++.+++.+  +.. +++
T Consensus        48 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~g~  125 (477)
T 1wao_1           48 LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-QKA  125 (477)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHH
Confidence            56788999999999999999999999999999999987 89999999999999999999999999999988  777 899


Q ss_pred             HHHHHHHHH-----------HHHHhCCCC
Q 046296          141 ASRAESYFD-----------QAVKSAPDD  158 (167)
Q Consensus       141 ~~eA~~~~e-----------~Al~l~P~~  158 (167)
                      +++|+++++           ++++++|+.
T Consensus       126 ~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          126 FERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHhccccccchhHhhhhhhhccccccc
Confidence            999999999           888888764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.24  E-value=1.8e-11  Score=95.84  Aligned_cols=93  Identities=20%  Similarity=0.242  Sum_probs=84.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---------------  119 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l--------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l---------------  119 (167)
                      .+|...+++++|+.+|++++++        .|..+.++..++.++. ..+++++|+.+|++++++               
T Consensus       161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  239 (311)
T 3nf1_A          161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL-KQGKFKQAETLYKEILTRAHEREFGSVDDENKP  239 (311)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence            4677889999999999999999        7788889999999987 899999999999999984               


Q ss_pred             ----------------------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          120 ----------------------------------NPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       120 ----------------------------------~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                                                        +|..+.++..+|.++.. +|++++|+++|++|+++.|.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR-QGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhhc
Confidence                                              57778899999999999 99999999999999999885

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.24  E-value=2e-12  Score=111.31  Aligned_cols=99  Identities=11%  Similarity=0.027  Sum_probs=91.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---------------GNILS  128 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---------------~~al~  128 (167)
                      ++....++++|+.+|+++++.+|+++.++.++|.+++ ..+++++|+.+|++||+++|++               ..++.
T Consensus       243 y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~  321 (457)
T 1kt0_A          243 YEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL  321 (457)
T ss_dssp             EEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred             EEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence            3345578889999999999999999999999999997 8999999999999999999999               79999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          129 LYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       129 ~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++|.+++. ++++++|+.+|++||+++|+++.++.+
T Consensus       322 nla~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~  356 (457)
T 1kt0_A          322 NLAMCYLK-LREYTKAVECCDKALGLDSANEKGLYR  356 (457)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHH
Confidence            99999999 999999999999999999999877654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.23  E-value=3.2e-11  Score=91.06  Aligned_cols=90  Identities=18%  Similarity=0.124  Sum_probs=74.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|...+++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|+++++++|+++.++..++.++.. .+++.
T Consensus        96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~  173 (198)
T 2fbn_A           96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK-LKEAR  173 (198)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HHHHH
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999999998 88888


Q ss_pred             HHH-HHHHHHHHh
Q 046296          143 RAE-SYFDQAVKS  154 (167)
Q Consensus       143 eA~-~~~e~Al~l  154 (167)
                      ++. ..|.+.+..
T Consensus       174 ~~~~~~~~~~f~~  186 (198)
T 2fbn_A          174 KKDKLTFGGMFDK  186 (198)
T ss_dssp             C------------
T ss_pred             HHHHHHHHHHhcc
Confidence            877 555555544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.22  E-value=9e-11  Score=88.65  Aligned_cols=93  Identities=13%  Similarity=0.018  Sum_probs=85.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILAN-P-GDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g---d~e~A~~~~~rAl~l~-P-~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      .....+.+.|.+.++.+|.++.+.++||++|. ...   ++++++.+++..++.+ | ++.+.++++|..+++ .++|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv-~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHH
Confidence            46788999999999999999999999999997 666   6789999999999999 8 679999999999999 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHH
Q 046296          144 AESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l~  163 (167)
                      |+++++++|+++|+|..+..
T Consensus        90 A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHH
Confidence            99999999999999987653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.22  E-value=5.9e-11  Score=82.00  Aligned_cols=78  Identities=22%  Similarity=0.206  Sum_probs=72.7

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296           85 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus        85 ~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      .|.++.+++.+|.++. ..+++++|+.+|+++++++|+++.++..+|.+++. .+++++|+.+|+++++++|+++.++.+
T Consensus        12 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            5778899999999887 89999999999999999999999999999999999 999999999999999999999877644

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.22  E-value=2.2e-10  Score=77.72  Aligned_cols=79  Identities=20%  Similarity=0.324  Sum_probs=69.7

Q ss_pred             hCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296           84 ANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus        84 l~P~n-~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ++|.+ +.+++.++.++. ..+++++|+++|+++++.+|+++.++..++.++.. .+++++|+.+|++++++.|.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             ----CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHH
Confidence            46766 788999999886 79999999999999999999999999999999999 9999999999999999999998765


Q ss_pred             Hh
Q 046296          163 IK  164 (167)
Q Consensus       163 ~~  164 (167)
                      .+
T Consensus        81 ~~   82 (125)
T 1na0_A           81 YN   82 (125)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.21  E-value=1.2e-10  Score=78.15  Aligned_cols=68  Identities=16%  Similarity=0.126  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296           93 GNYARFLKEVRGDFAKAEELCGRAILANPGDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus        93 ~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~-al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      ++.|..+. ..+++++|+.+|+++++++|+++. ++..+|.+++. ++++++|+++|+++++++|+++.++
T Consensus         4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            45677776 799999999999999999999999 99999999999 9999999999999999999998776

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.21  E-value=8.1e-11  Score=80.51  Aligned_cols=77  Identities=13%  Similarity=0.061  Sum_probs=71.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      .+|...+++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+|+++++++|+++.++..++.++.. .+++
T Consensus        54 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~  130 (131)
T 2vyi_A           54 AAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS-SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK-LREA  130 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HTTC
T ss_pred             HHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HhcC
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999999988 7764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=8.1e-11  Score=101.59  Aligned_cols=101  Identities=13%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~-~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ++.+.+++++|...|+++++++|.++ .+|.+++.++. ..+++++|+++|++|++..|.+..++...+.+.+...++++
T Consensus       330 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~  408 (530)
T 2ooe_A          330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS  408 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHH
T ss_pred             HHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChh
Confidence            45667888999999999999988886 58888887765 56667777777777777666666555555544332267777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|+++|+++|++.|+++.++.+|
T Consensus       409 ~A~~~~e~al~~~p~~~~~~~~~  431 (530)
T 2ooe_A          409 VAFKIFELGLKKYGDIPEYVLAY  431 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHH
Confidence            77777777777777776665443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.20  E-value=4.3e-11  Score=98.26  Aligned_cols=91  Identities=12%  Similarity=0.092  Sum_probs=83.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPGDGNILSLYAD  132 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l------~P~~~~al~~lA~  132 (167)
                      ..|...+++++|+.+|+++++++|+++    .++..++.++. ..+++++|+.+|++++++      .|..+.++..+|.
T Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  134 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN  134 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence            456788999999999999999999998    57889999887 799999999999999998      6888899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Q 046296          133 LIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       133 ~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      ++.. ++++++|+.+|++++++.
T Consensus       135 ~~~~-~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A          135 TLKV-MGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHH-CCCHHHHHHHHHHHHHHH
Confidence            9999 999999999999999983

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.19  E-value=2.8e-10  Score=76.59  Aligned_cols=75  Identities=16%  Similarity=0.022  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296           88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus        88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      .+..++.++..+. ..+++++|+.+|++++..+|+++.++..+|.+++. ++++++|+.+++++++++|+++.++.+
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (118)
T 1elw_A            3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSR   77 (118)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHH
Confidence            4677888998886 79999999999999999999999999999999999 999999999999999999999876644

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.18  E-value=8e-11  Score=82.09  Aligned_cols=70  Identities=19%  Similarity=0.131  Sum_probs=63.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      .+|...+++++|+.+|+++++++|+++.++++++.++. ..+++++|+.+|+++++++|+++.+......+
T Consensus        35 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           35 STFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGVELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            46888999999999999999999999999999999997 89999999999999999999999876544333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2.2e-10  Score=80.67  Aligned_cols=81  Identities=16%  Similarity=0.084  Sum_probs=74.6

Q ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           82 IEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus        82 L~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      +..+|.++..++.++..+. ..+++++|+.+|+++++++|++   +.++..++.+++. ++++++|+.+|+++++++|++
T Consensus        21 ~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCC
T ss_pred             CccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccC
Confidence            3567899999999999887 7999999999999999999998   8999999999999 999999999999999999999


Q ss_pred             HHHHHh
Q 046296          159 WLNLIK  164 (167)
Q Consensus       159 ~~~l~~  164 (167)
                      +.++.+
T Consensus        99 ~~~~~~  104 (148)
T 2dba_A           99 VKALYR  104 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876644

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.16  E-value=6.7e-11  Score=95.79  Aligned_cols=93  Identities=13%  Similarity=0.016  Sum_probs=68.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLY  130 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~l  130 (167)
                      .+|.. +++++|+.+|++|+++.|..      ..++.+++.++. ..+++++|+.+|++++++.|.+      ..++..+
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  201 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ  201 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            34555 78888888888888877654      567777887775 6888888888888888876543      2356667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          131 ADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       131 A~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      +.+++. ++++++|+.+|++++ ++|+..
T Consensus       202 g~~~~~-~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          202 VLVQLH-RADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHH-cCCHHHHHHHHHHHh-CCCCCC
Confidence            777777 788888888888888 877643

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.16  E-value=9.4e-11  Score=94.47  Aligned_cols=86  Identities=14%  Similarity=0.135  Sum_probs=78.9

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD--GNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~--~~al~~lA~~l~~~~g~~~eA  144 (167)
                      .+++.++|+..|+++++++|+++.+++++|.++. ..+++++|+..|+++++++|++  +.++.+++.++.. .|+.++|
T Consensus       197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~-~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~-~g~~~~a  274 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLH-QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA-LGTGDAL  274 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH-HCTTCHH
T ss_pred             hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH-cCCCCcH
Confidence            3455666888899999999999999999999987 8999999999999999999998  8999999999998 9999999


Q ss_pred             HHHHHHHHHh
Q 046296          145 ESYFDQAVKS  154 (167)
Q Consensus       145 ~~~~e~Al~l  154 (167)
                      +..|+++|..
T Consensus       275 ~~~~r~al~~  284 (287)
T 3qou_A          275 ASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.16  E-value=8.4e-11  Score=82.81  Aligned_cols=92  Identities=13%  Similarity=0.038  Sum_probs=78.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLY  130 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~l  130 (167)
                      .+|...+++++|+.+|++++++.|...      .++.+++.++. ..+++++|+.++++++++.|..      +.++.++
T Consensus        17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   95 (164)
T 3ro3_A           17 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL   95 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            467788999999999999999876532      47888998886 7999999999999999986653      6788899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          131 ADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       131 A~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      |.+++. ++++++|+.++++++++.+
T Consensus        96 ~~~~~~-~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           96 GNTYTL-LQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence            999999 9999999999999998743

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.16  E-value=1.2e-10  Score=91.08  Aligned_cols=93  Identities=9%  Similarity=0.061  Sum_probs=83.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPGDGNILSLYAD  132 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l------~P~~~~al~~lA~  132 (167)
                      ..+...+++++|+.+|+++++++|+++    .++..++.++. ..+++++|+.++++++++      .|..+.++..++.
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~   91 (338)
T 3ro2_A           13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   91 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            467788999999999999999999995    67788998886 899999999999999988      5666889999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          133 LIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       133 ~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      ++.. .+++++|+.+|++++++.|.
T Consensus        92 ~~~~-~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           92 TLKV-LGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-ccCHHHHHHHHHHHHHHHHH
Confidence            9999 99999999999999998664

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.15  E-value=5.1e-10  Score=89.56  Aligned_cols=92  Identities=10%  Similarity=0.040  Sum_probs=80.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAI---LANPGDG----NILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl---~l~P~~~----~al~~  129 (167)
                      .+|...+++++|+.+|++++++.+..      ..+++++|.++. ..+++++|+.+|++|+   +..|++.    .++.+
T Consensus       123 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n  201 (293)
T 2qfc_A          123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence            35667789999999999999887654      568899999887 7999999999999999   5567654    68899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      +|.+++. ++++++|+.+|++|+++.+
T Consensus       202 lg~~y~~-~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          202 HAKALYL-DSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence            9999999 9999999999999999864

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.15  E-value=9.3e-10  Score=86.23  Aligned_cols=87  Identities=17%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPGDGNILSLYADLIWQ---  136 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~----~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---  136 (167)
                      .|...+++++|+.+|+++++  |+++.++++++.++. .    .+++++|+.+|++|++++  ++.++.++|.++..   
T Consensus        15 ~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~   89 (273)
T 1ouv_A           15 KSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQG   89 (273)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred             HHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCC
Confidence            45566677777777777776  667777777777665 6    677777777777777664  67777777776653   


Q ss_pred             HcCCHHHHHHHHHHHHHhC
Q 046296          137 AHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       137 ~~g~~~eA~~~~e~Al~l~  155 (167)
                      ..+++++|+.+|++|++++
T Consensus        90 ~~~~~~~A~~~~~~a~~~~  108 (273)
T 1ouv_A           90 VSQNTNKALQYYSKACDLK  108 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHTT
T ss_pred             cccCHHHHHHHHHHHHHcC
Confidence            1567777777777777663

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=4.9e-11  Score=93.33  Aligned_cols=90  Identities=22%  Similarity=0.297  Sum_probs=81.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PGDGNI  126 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l--------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--------P~~~~a  126 (167)
                      .+|...+++++|+.+|++++++        .|..+.++.+++.++. ..+++++|+.+|++++++.        |....+
T Consensus        77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  155 (311)
T 3nf1_A           77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ  155 (311)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            4677889999999999999998        4667788999999887 7999999999999999984        667788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      +..+|.++.. .+++++|+.+|++++++
T Consensus       156 ~~~la~~~~~-~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          156 LNNLALLCQN-QGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence            9999999999 99999999999999998

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.14  E-value=1.6e-10  Score=81.39  Aligned_cols=93  Identities=11%  Similarity=0.046  Sum_probs=80.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP------GDGNILSLY  130 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P------~~~~al~~l  130 (167)
                      .+|...+++++|+.+|++++++.|..      +.++.+++.++. ..+++++|+.++++++++.+      ..+.++..+
T Consensus        57 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  135 (164)
T 3ro3_A           57 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL  135 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHH
Confidence            46788899999999999999987654      667889999886 79999999999999998743      235678899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          131 ADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       131 A~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      +.+++. ++++++|+.++++++++...
T Consensus       136 a~~~~~-~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          136 GNAYTA-LGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHH-HTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHH-ccCHHHHHHHHHHHHHHHHH
Confidence            999999 99999999999999998654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.14  E-value=3.1e-10  Score=97.95  Aligned_cols=92  Identities=17%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 046296           72 SSTDAYNEKMIEANPGNALLLGNYARFLKEV------RGDFA-------KAEELCGRAIL-ANPGDGNILSLYADLIWQA  137 (167)
Q Consensus        72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~------~gd~e-------~A~~~~~rAl~-l~P~~~~al~~lA~~l~~~  137 (167)
                      .+|+..|+++|+.+|+++.+|..++.++...      .++++       +|+..|++|++ ++|+++.+|..++.++.. 
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  333 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            4788899999999999999999999987521      68876       89999999997 899999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-HHHHh
Q 046296          138 HKDASRAESYFDQAVKSAPDDW-LNLIK  164 (167)
Q Consensus       138 ~g~~~eA~~~~e~Al~l~P~~~-~~l~~  164 (167)
                      .+++++|+.+|++++++.|.++ .++.+
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~  361 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQ  361 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHH
Confidence            9999999999999999999886 35544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.13  E-value=8.3e-11  Score=94.19  Aligned_cols=94  Identities=10%  Similarity=0.015  Sum_probs=78.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILA-------NPGDGNILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-------~P~~~~al~~  129 (167)
                      .+|...+++++|+.+|++++++.+..      ..+++++|.++. ..+++++|+.+|++|++.       .|..+.++++
T Consensus       123 ~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n  201 (293)
T 3u3w_A          123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence            35566789999999999999976543      337899999887 799999999999999953       2334568899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      +|.+++. ++++++|+.++++|+++.+..
T Consensus       202 lg~~y~~-~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          202 HAKALYL-DSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHHHHHHc
Confidence            9999999 999999999999999986543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.13  E-value=1.2e-10  Score=95.94  Aligned_cols=92  Identities=12%  Similarity=0.067  Sum_probs=83.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAIL-----AN-PGDGNILSLY  130 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~-----l~-P~~~~al~~l  130 (167)
                      .+|...+++++|+.+|++|+++.|...      .++.++|.++. ..+++++|+.+|++|++     .+ |..+.++.++
T Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN-SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            578888999999999999999866543      58899999887 89999999999999999     56 8889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          131 ADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       131 A~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      |.+++. ++++++|+.+|++|+++.+
T Consensus       271 ~~~~~~-~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          271 TQIHYK-LGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence            999999 9999999999999999854

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.13  E-value=4.1e-10  Score=90.55  Aligned_cols=78  Identities=19%  Similarity=0.076  Sum_probs=73.2

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296           86 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus        86 P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      |.++.++..+|..+. ..+++++|+.+|++|++++|+++.++.++|.++.. ++++++|+.+|++|++++|+++.++.++
T Consensus         1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            678899999999987 89999999999999999999999999999999999 9999999999999999999998776543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.13  E-value=7.9e-10  Score=91.68  Aligned_cols=93  Identities=15%  Similarity=0.054  Sum_probs=85.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc---C
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPGDGNILSLYADLI----WQAH---K  139 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g--d~e~A~~~~~rAl~l~P~~~~al~~lA~~l----~~~~---g  139 (167)
                      ...++|+.++.++|+++|++..+|+..+.++. ..+  ++++++++++++|.++|++..+|+....++    .. .   .
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-l~~~~  124 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-NNNDF  124 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-TTTCC
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-ccccC
Confidence            44579999999999999999999999999987 677  999999999999999999999999999999    55 5   7


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          140 DASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       140 ~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      ++++++.+++++++++|.|..++.
T Consensus       125 ~~~~EL~~~~~~l~~~pkny~aW~  148 (306)
T 3dra_A          125 DPYREFDILEAMLSSDPKNHHVWS  148 (306)
T ss_dssp             CTHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHH
Confidence            899999999999999999988763

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.12  E-value=5.1e-11  Score=96.49  Aligned_cols=93  Identities=13%  Similarity=0.117  Sum_probs=79.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLY  130 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~--n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~l  130 (167)
                      .+|...+++++|+.+|++|+++.+.  +    ..++.+++.++. . +++++|+.+|++|+++.|..      +.++.++
T Consensus        84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l  161 (307)
T 2ifu_A           84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA  161 (307)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            4677788999999999999998543  2    467888998885 5 99999999999999998754      6788899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          131 ADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       131 A~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      |.++.. ++++++|+.+|++++++.|.+
T Consensus       162 g~~~~~-~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          162 SRLLVR-QQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHHHHc
Confidence            999999 999999999999999987654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.12  E-value=2.1e-10  Score=93.01  Aligned_cols=93  Identities=9%  Similarity=0.061  Sum_probs=83.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPGDGNILSLYAD  132 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l------~P~~~~al~~lA~  132 (167)
                      ..+...+++++|+.+|++++++.|+++    .++..++.++. ..+++++|+.+|++|+.+      .|..+.++..+|.
T Consensus        17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~   95 (406)
T 3sf4_A           17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   95 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            467788999999999999999999995    57888998887 799999999999999988      4566788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          133 LIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       133 ~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      +++. .+++++|+.+|++++++.|.
T Consensus        96 ~~~~-~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           96 TLKV-LGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHHHHh
Confidence            9999 99999999999999998764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.11  E-value=1.1e-10  Score=93.56  Aligned_cols=91  Identities=12%  Similarity=0.051  Sum_probs=78.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA-------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l-------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~  129 (167)
                      .+|...+++++|+.+|+++++.       .|..+.++++++.++. ..+++++|+.++++|+++.+..      +.++.+
T Consensus       163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            4688899999999999999953       2223468899999987 8999999999999999987654      889999


Q ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 046296          130 YADLIWQAHK-DASRAESYFDQAVKSA  155 (167)
Q Consensus       130 lA~~l~~~~g-~~~eA~~~~e~Al~l~  155 (167)
                      +|.++.. ++ ++++|+.+|++|+.+.
T Consensus       242 lg~~~~~-~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          242 RGECLRK-LEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hCCcHHHHHHHHHHHHHHH
Confidence            9999999 99 5799999999999863

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.11  E-value=2.9e-10  Score=77.88  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=65.8

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           86 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus        86 P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      |..+..++.+|.++. ..+++++|+.+|+++++++|.++.++..+|.+++. ++++++|+.+|++++++.|++
T Consensus         1 ~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            1 GKQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhcccc
Confidence            345678889999886 79999999999999999999999999999999999 999999999999999998876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.11  E-value=1.5e-10  Score=84.71  Aligned_cols=73  Identities=11%  Similarity=-0.015  Sum_probs=66.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG-NILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~-~al~~lA~~l~~  136 (167)
                      .+|...+++++|+.+|+++|+++|+++.+++.+|.++. ..+++++|+..|++|++++|+++ .+...+..+...
T Consensus        71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARI-AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999997 89999999999999999999999 667777776655

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.11  E-value=1.4e-10  Score=95.62  Aligned_cols=98  Identities=11%  Similarity=-0.013  Sum_probs=83.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG------NILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n-------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~------~al~~  129 (167)
                      .+|...+++++|+.+|++|+++.+..       +.++.++|.++. ..+++++|+.+|++|+++.|...      .++.+
T Consensus       151 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  229 (383)
T 3ulq_A          151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN  229 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            56788899999999999999985543       458889999887 89999999999999999866443      58899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCHHHH
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKS-----A-PDDWLNL  162 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l-----~-P~~~~~l  162 (167)
                      +|.++.. ++++++|+.+|++|+++     + |..+.++
T Consensus       230 lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          230 IGLCKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            9999999 99999999999999994     5 5555444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.10  E-value=2.1e-10  Score=85.14  Aligned_cols=91  Identities=10%  Similarity=0.012  Sum_probs=74.8

Q ss_pred             chhhcCCChHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIE------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---NPG----DGNILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~------l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l---~P~----~~~al~~  129 (167)
                      .+|...+++++|+.+|+++++      ..|..+.++.+++.++. ..+++++|+.++++++++   .|+    .+.++.+
T Consensus        34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  112 (203)
T 3gw4_A           34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYE  112 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence            467778899999999999998      45556778888888886 789999999999999988   443    3566788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      +|.+++. ++++++|+.++++++++.
T Consensus       113 lg~~~~~-~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A          113 VATVALH-FGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence            8999988 999999999999998763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=9.9e-10  Score=97.66  Aligned_cols=92  Identities=12%  Similarity=0.040  Sum_probs=76.0

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPGDGNILSLYADLIWQAHK  139 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd----------~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g  139 (167)
                      ..++|+.++.++|+++|++..+|+..+.++. ..++          +++|+++++++++.+|++..+|++.++++.. .+
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~-~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQ-HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHH-hcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc
Confidence            4567888888888888888888888888776 5555          8888888888888888888888888888887 88


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          140 --DASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       140 --~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                        ++++|+++++++++++|.|..++.
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N~~aW~  147 (567)
T 1dce_A          122 EPNWARELELCARFLEADERNFHCWD  147 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccHHHHHHHHHHHHhhccccccHHH
Confidence              668888888888888888877664

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.10  E-value=4.7e-10  Score=89.77  Aligned_cols=92  Identities=15%  Similarity=0.052  Sum_probs=80.6

Q ss_pred             cchhhcCCChHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMI---EANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILANPG------DGNILS  128 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL---~l~P~n~----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~------~~~al~  128 (167)
                      +.+|...+++++|+.+|++|+   +..|+++    .+++++|.++. ..+++++|+.+|++|+++.++      -+.++.
T Consensus       162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~-~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~  240 (293)
T 2qfc_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY-LDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH-HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            357888999999999999999   6677754    68899999987 899999999999999998653      278899


Q ss_pred             HHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 046296          129 LYADLIWQAHKDASRA-ESYFDQAVKSA  155 (167)
Q Consensus       129 ~lA~~l~~~~g~~~eA-~~~~e~Al~l~  155 (167)
                      ++|.++.. ++++++| ..+|++|+.+.
T Consensus       241 ~lg~~y~~-~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          241 QRGECLRK-LEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-cCCcHHHHHHHHHHHHHHH
Confidence            99999999 9999999 88899998763

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.10  E-value=3.2e-10  Score=93.98  Aligned_cols=88  Identities=14%  Similarity=0.168  Sum_probs=79.8

Q ss_pred             CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCC
Q 046296           69 HGSSSTDAYNEKMIEANPG--NALLLGNYARFLKEV-----RGDFAKAEELCGRAILANPGD-GNILSLYADLIWQAHKD  140 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~--n~~~l~~lA~~l~~~-----~gd~e~A~~~~~rAl~l~P~~-~~al~~lA~~l~~~~g~  140 (167)
                      ....+|+..+++||+++|+  +..+|..++.++. .     -|+.++|+++|+|||+++|+. ..+++.||..+...+++
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~-~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYA-AAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-HSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH-hCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            5688999999999999999  7779999998776 5     399999999999999999975 99999999999873499


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 046296          141 ASRAESYFDQAVKSAPD  157 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~  157 (167)
                      +++|.+++++|++++|.
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999887

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.08  E-value=4e-10  Score=94.86  Aligned_cols=83  Identities=14%  Similarity=0.015  Sum_probs=77.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+.+++++|+.+|++||+++|+++.+++++|.++. ..+++++|+.+|++|++++|+++.++..++.++.. +++++
T Consensus       281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~-~~~~~  358 (370)
T 1ihg_A          281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK-IKAQK  358 (370)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHH
Confidence            46788899999999999999999999999999999987 89999999999999999999999999999999988 88888


Q ss_pred             HHHHH
Q 046296          143 RAESY  147 (167)
Q Consensus       143 eA~~~  147 (167)
                      +|.+.
T Consensus       359 ~a~k~  363 (370)
T 1ihg_A          359 DKEKA  363 (370)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            77654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.08  E-value=7.6e-10  Score=84.09  Aligned_cols=72  Identities=21%  Similarity=0.135  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG-------DGN-----ILSLYADLIWQAHKDASRAESYFDQAVKS--  154 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~-------~~~-----al~~lA~~l~~~~g~~~eA~~~~e~Al~l--  154 (167)
                      +..+.+.+..++ ..+++++|+..|++||+++|+       +..     +|.++|.++.. +++|++|+..|++||++  
T Consensus        11 a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence            456788898887 799999999999999999999       544     99999999999 99999999999999999  


Q ss_pred             -----CCCCHHHH
Q 046296          155 -----APDDWLNL  162 (167)
Q Consensus       155 -----~P~~~~~l  162 (167)
                           +|+++.+|
T Consensus        89 ~~~e~~pd~~~A~  101 (159)
T 2hr2_A           89 RRGELNQDEGKLW  101 (159)
T ss_dssp             HHCCTTSTHHHHH
T ss_pred             ccccCCCchHHHH
Confidence                 99998887

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.07  E-value=3.3e-10  Score=87.27  Aligned_cols=82  Identities=21%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH---HcCC
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANP--GDGNILSLYADLIWQ---AHKD  140 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~----~gd~e~A~~~~~rAl~l~P--~~~~al~~lA~~l~~---~~g~  140 (167)
                      ++++|+.+|+++++  +.++.++++++.++. .    .+++++|+.+|++|++..|  .++.+++++|.++..   +.++
T Consensus        68 ~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d  144 (212)
T 3rjv_A           68 DYPQARQLAEKAVE--AGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED  144 (212)
T ss_dssp             CHHHHHHHHHHHHH--TTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred             CHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence            56666666666633  456666666666553 3    4566666666666666665  346666666666654   1345


Q ss_pred             HHHHHHHHHHHHHh
Q 046296          141 ASRAESYFDQAVKS  154 (167)
Q Consensus       141 ~~eA~~~~e~Al~l  154 (167)
                      +++|+.+|++|+++
T Consensus       145 ~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          145 DVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            66666666666666

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.07  E-value=8.1e-10  Score=76.65  Aligned_cols=71  Identities=20%  Similarity=0.122  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 046296           90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---WLNL  162 (167)
Q Consensus        90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~---~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~---~~~l  162 (167)
                      .+++.+|..+. ..+++++|+.+|+++++.+|+++   .+++.+|.+++. ++++++|+.+|++++++.|++   +.++
T Consensus         3 ~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (129)
T 2xev_A            3 RTAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGL   79 (129)
T ss_dssp             CCHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence            35677888886 79999999999999999999998   899999999999 999999999999999999999   5544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.07  E-value=5.5e-10  Score=86.02  Aligned_cols=89  Identities=10%  Similarity=-0.019  Sum_probs=78.6

Q ss_pred             CCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 046296           68 NHGSSSTDAYNEKMIEANP--GNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK--  139 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P--~n~~~l~~lA~~l~~~----~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g--  139 (167)
                      ..++++|+.+|+++++..|  .++.++++|+.++. .    .+++++|+.+|++|+++ |.++.++++++.++..-.+  
T Consensus       102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~  179 (212)
T 3rjv_A          102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA-SGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGF  179 (212)
T ss_dssp             SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH-HTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTT
T ss_pred             ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCC
Confidence            5799999999999999998  46999999999886 6    77999999999999998 8888899999999986123  


Q ss_pred             ---CHHHHHHHHHHHHHhCCCC
Q 046296          140 ---DASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       140 ---~~~eA~~~~e~Al~l~P~~  158 (167)
                         ++++|+.+|++|++..+..
T Consensus       180 ~~~d~~~A~~~~~~A~~~g~~~  201 (212)
T 3rjv_A          180 IEPNKQKALHWLNVSCLEGFDT  201 (212)
T ss_dssp             BCCCHHHHHHHHHHHHHHTCHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHH
Confidence               8999999999999986543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.07  E-value=8.1e-10  Score=98.21  Aligned_cols=92  Identities=13%  Similarity=0.120  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPGDGNILSLYADLIWQAHK-DASRAESY  147 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g--d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g-~~~eA~~~  147 (167)
                      +++|+.+++++|+.+|++..+|+..+.++. ..+  ++++|+++++++++++|++..+|.+.+.++.. .+ .+++++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH-cCCChHHHHHH
Confidence            899999999999999999999999999886 788  77999999999999999999999999999998 88 99999999


Q ss_pred             HHHHHHhCCCCHHHHHh
Q 046296          148 FDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       148 ~e~Al~l~P~~~~~l~~  164 (167)
                      ++++|+++|+|..++.+
T Consensus       167 ~~~~I~~~p~n~saW~~  183 (567)
T 1dce_A          167 TDSLITRNFSNYSSWHY  183 (567)
T ss_dssp             HHTTTTTTCCCHHHHHH
T ss_pred             HHHHHHHCCCCccHHHH
Confidence            99999999999987754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.05  E-value=3.2e-09  Score=83.17  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=60.4

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCC
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPGDGNILSLYADLIWQ---AHKD  140 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~----~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---~~g~  140 (167)
                      .+++++|+.+|+++++++  ++.++++++.++. .    .+++++|+.+|++|++.  +++.++.++|.++..   ..++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~  129 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD  129 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC
Confidence            567777777777777764  6777777777765 6    77777777777777776  367777777777653   1567


Q ss_pred             HHHHHHHHHHHHHhCC
Q 046296          141 ASRAESYFDQAVKSAP  156 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P  156 (167)
                      +++|+.+|++|+++.+
T Consensus       130 ~~~A~~~~~~a~~~~~  145 (273)
T 1ouv_A          130 FKKAVEYFTKACDLND  145 (273)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCc
Confidence            7777777777777653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.05  E-value=5.1e-10  Score=92.34  Aligned_cols=93  Identities=14%  Similarity=0.011  Sum_probs=83.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAIL-----ANPGDGNILSLYA  131 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~------n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~-----l~P~~~~al~~lA  131 (167)
                      .+|...+++++|+.+|++|+++.+.      .+.++.++|.++. ..+++++|+.+|++|++     .+|..+.++.++|
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  268 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS  268 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence            4678889999999999999997442      2467889999887 79999999999999999     8898899999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          132 DLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       132 ~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      .+++. ++++++|+.+|++|+++.+.
T Consensus       269 ~~~~~-~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          269 WTLCK-AGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence            99999 99999999999999998654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.05  E-value=2.1e-09  Score=89.06  Aligned_cols=92  Identities=10%  Similarity=0.064  Sum_probs=84.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFL----KEVR---GDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l----~~~~---gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+++++.++.++|+++|++..+|+....++    . ..   .+++++++++.++++++|++..+|.+...++.. .++++
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~-~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~-l~~~~  161 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME-LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT-FDLHN  161 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH-HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCTT
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH-hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcccC
Confidence            899999999999999999999999998888    4 34   789999999999999999999999999999988 99988


Q ss_pred             --HHHHHHHHHHHhCCCCHHHHH
Q 046296          143 --RAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       143 --eA~~~~e~Al~l~P~~~~~l~  163 (167)
                        +++++++++|+++|.|..++.
T Consensus       162 ~~~EL~~~~~~i~~d~~N~sAW~  184 (306)
T 3dra_A          162 DAKELSFVDKVIDTDLKNNSAWS  184 (306)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHH
Confidence              999999999999999987774

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.04  E-value=2.2e-10  Score=92.91  Aligned_cols=93  Identities=13%  Similarity=0.023  Sum_probs=68.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLY  130 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~------~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~l  130 (167)
                      .+|...+++++|+.+|++++++.|....      ++.+++.++. ..+++++|+.+|++++++.|..      +.++..+
T Consensus       195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  273 (406)
T 3sf4_A          195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL  273 (406)
T ss_dssp             HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHH
Confidence            3566667788888888888877665433      6777777775 6788888888888888776655      6677777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          131 ADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       131 A~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      |.++.. ++++++|+.+|++++++.|.
T Consensus       274 a~~~~~-~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          274 GNTYTL-LQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-hCcHHHHHHHHHHHHHHHHh
Confidence            777777 78888888888888777543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.04  E-value=2.7e-09  Score=90.19  Aligned_cols=94  Identities=12%  Similarity=0.108  Sum_probs=86.8

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-C-CHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPGDGNILSLYADLIWQAH-K-DASRA  144 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g-d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~-g-~~~eA  144 (167)
                      ....++|+.++.++|+++|++..+|+....++. ..+ ++++++++++++|..+|++..+|.....++.. . + +++++
T Consensus        67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~-l~~~~~~~E  144 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR-ISPQDPVSE  144 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HCCSCCHHH
T ss_pred             CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCCChHHH
Confidence            355678999999999999999999999999987 677 69999999999999999999999999999998 6 7 89999


Q ss_pred             HHHHHHHHHhCCCCHHHHH
Q 046296          145 ESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       145 ~~~~e~Al~l~P~~~~~l~  163 (167)
                      +++++++|+++|.|..++.
T Consensus       145 L~~~~k~L~~dpkNy~AW~  163 (349)
T 3q7a_A          145 IEYIHGSLLPDPKNYHTWA  163 (349)
T ss_dssp             HHHHHHHTSSCTTCHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHH
Confidence            9999999999999988764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.03  E-value=3.1e-09  Score=89.19  Aligned_cols=92  Identities=12%  Similarity=-0.027  Sum_probs=65.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILANPGDGNILSLYADLIWQAH----------  138 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd-~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~----------  138 (167)
                      .+++++.++.++|+++|.|..+|+....++. ..+. ++++++++.++|+.+|.|..+|++.+.++.. .          
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~-~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~-l~~~~~~~~~~  202 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ-LHPQPDSGPQG  202 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-HSCCC------
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hhhcccccccc
Confidence            3677777777777777777777777776665 5565 5777777777777777777777777777666 4          


Q ss_pred             ----CCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          139 ----KDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       139 ----g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                          +.++++++++++||.++|+|..++.
T Consensus       203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~  231 (331)
T 3dss_A          203 RLPENVLLKELELVQNAFFTDPNDQSAWF  231 (331)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence                3466777777777777777776663

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.02  E-value=8.6e-10  Score=75.33  Aligned_cols=59  Identities=12%  Similarity=0.081  Sum_probs=55.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG  122 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~  122 (167)
                      .+|...+++++|+.+|+++++++|+++.+|+++|.++. ..+++++|+.+|++++++.|.
T Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A           15 QEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhc
Confidence            57888999999999999999999999999999999987 899999999999999998764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.02  E-value=1.4e-09  Score=95.44  Aligned_cols=96  Identities=11%  Similarity=0.082  Sum_probs=81.4

Q ss_pred             hhcCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPGD---GNILS  128 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l-----~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-----~P~~---~~al~  128 (167)
                      +.+++++++|+..|+++|++     .|++|   .++.++|.++. .+|++++|+.+++++|++     -|++   +.++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            45779999999999999987     45665   56788998886 899999999999999987     3454   56678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 046296          129 LYADLIWQAHKDASRAESYFDQAVKS-----APDDWLNL  162 (167)
Q Consensus       129 ~lA~~l~~~~g~~~eA~~~~e~Al~l-----~P~~~~~l  162 (167)
                      ++|.+|.. +|++++|+.+|++|+++     .|++|.+.
T Consensus       398 nLa~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  435 (490)
T 3n71_A          398 RAGLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHPITK  435 (490)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence            99999999 99999999999999985     78887654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.01  E-value=1.5e-09  Score=93.96  Aligned_cols=93  Identities=12%  Similarity=0.008  Sum_probs=79.2

Q ss_pred             CCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPGDGNILSLYA  131 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l-----~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l--------~P~~~~al~~lA  131 (167)
                      .+++++|+..|+++|++     .|++|   ..+.++|.++. .+|++++|+.+++++|++        +|+-+..++++|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            46899999999999985     57776   45778998886 899999999999999977        344456778999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 046296          132 DLIWQAHKDASRAESYFDQAVKS-----APDDWLNL  162 (167)
Q Consensus       132 ~~l~~~~g~~~eA~~~~e~Al~l-----~P~~~~~l  162 (167)
                      .+|+. +|++++|+.+|++|+++     .|++|.+.
T Consensus       390 ~~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            99999 99999999999999986     78888665

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.01  E-value=9.1e-09  Score=74.64  Aligned_cols=88  Identities=17%  Similarity=0.117  Sum_probs=75.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPGDGNILSLYADLIWQ--  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~----~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~--  136 (167)
                      .+|......++|+.+|+++.+.  .++.++++++.++. .    ..++++|+.+|++|.+.  .++.++++++.++..  
T Consensus        33 ~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~  107 (138)
T 1klx_A           33 LVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE-NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGK  107 (138)
T ss_dssp             HHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred             HHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCC
Confidence            3455556788899999999987  78999999999876 5    78999999999999986  789999999999875  


Q ss_pred             -HcCCHHHHHHHHHHHHHhC
Q 046296          137 -AHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       137 -~~g~~~eA~~~~e~Al~l~  155 (167)
                       +.+++++|+.+|++|.+..
T Consensus       108 g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          108 GVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCcCHHHHHHHHHHHHHCC
Confidence             2579999999999999984

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.01  E-value=5.2e-09  Score=89.16  Aligned_cols=92  Identities=10%  Similarity=-0.008  Sum_probs=77.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------------------------------------------HHHcCC
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFL-------------------------------------------KEVRGD  105 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l-------------------------------------------~~~~gd  105 (167)
                      .++.+|+.+|++||+++|+++.++..++.++                                           ....++
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd  292 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK  292 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence            4578999999999999999988877433322                                           113689


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          106 FAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       106 ~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +++|+.++++|++++|+ ..++..+|.++.. .|++++|++.|++|+.++|..+.+.
T Consensus       293 ~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~~t~~  347 (372)
T 3ly7_A          293 TDESYQAINTGIDLEMS-WLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGANTLY  347 (372)
T ss_dssp             HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred             HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcChHH
Confidence            99999999999999974 7788899999998 9999999999999999999887443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.00  E-value=6.2e-10  Score=86.98  Aligned_cols=89  Identities=11%  Similarity=0.008  Sum_probs=41.3

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLYA  131 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~------n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~lA  131 (167)
                      +|...+++++|+.+|++++++.|.      ...++.+++.++. ..+++++|+.++++++++.|..      +.++..+|
T Consensus       192 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  270 (338)
T 3ro2_A          192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG  270 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence            344444455555555554444221      2444444444443 4445555555555554444333      34444444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 046296          132 DLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       132 ~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      .++.. ++++++|+.+|++++++
T Consensus       271 ~~~~~-~g~~~~A~~~~~~a~~~  292 (338)
T 3ro2_A          271 NTYTL-LQDYEKAIDYHLKHLAI  292 (338)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHH-hcCHHHHHHHHHHHHHH
Confidence            44444 45555555555554444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.00  E-value=8.5e-09  Score=86.54  Aligned_cols=92  Identities=13%  Similarity=0.111  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD-ASRAESY  147 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g--d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~-~~eA~~~  147 (167)
                      +++++.++.++|+.+|+++.+|+....++. ..+  ++++++.++.++++++|.|..+|.+.+.++.. .+. +++++++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~-~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHHH
Confidence            789999999999999999999999999886 677  48999999999999999999999999999998 888 6999999


Q ss_pred             HHHHHHhCCCCHHHHHh
Q 046296          148 FDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       148 ~e~Al~l~P~~~~~l~~  164 (167)
                      ++++|+++|.|..++.+
T Consensus       168 ~~~~I~~~p~N~SAW~~  184 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHY  184 (331)
T ss_dssp             HHHHHHHCSCCHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHH
Confidence            99999999999988754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.00  E-value=5.3e-09  Score=72.56  Aligned_cols=74  Identities=12%  Similarity=0.055  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILAN-------PGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-------P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      +.-.+.+|.+++ ..++|..|+.+|++|++..       +..+.++..++.++++ +|++++|+.++++|++++|+++.+
T Consensus         5 a~dc~~lG~~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            5 AEDCFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHH
Confidence            444556666665 5677777777777776652       2446666677777776 777777777777777777777666


Q ss_pred             HHh
Q 046296          162 LIK  164 (167)
Q Consensus       162 l~~  164 (167)
                      +.|
T Consensus        83 ~~n   85 (104)
T 2v5f_A           83 NGN   85 (104)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.00  E-value=1.3e-09  Score=82.75  Aligned_cols=60  Identities=12%  Similarity=0.058  Sum_probs=52.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR-----------GDFAKAEELCGRAILANPGDGNILSLY  130 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~-----------gd~e~A~~~~~rAl~l~P~~~~al~~l  130 (167)
                      .+++|+..|++||+++|+++.+|++++.++. ..           +++++|+++|++||+++|++..++..+
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~-~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al  131 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYT-SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3679999999999999999999999999987 44           489999999999999999997554443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.97  E-value=1.9e-09  Score=88.81  Aligned_cols=99  Identities=10%  Similarity=-0.143  Sum_probs=82.4

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHc
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PG-DGNILSLYADLIWQAH  138 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n--~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~-~~~al~~lA~~l~~~~  138 (167)
                      +|++.+++++|+.+|+++++..+..  ..++++++.++. ..+++++|+.+|++++...  |. .+.+++++|.++.. +
T Consensus       144 l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-l  221 (282)
T 4f3v_A          144 VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-Q  221 (282)
T ss_dssp             HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-H
T ss_pred             HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-c
Confidence            6677788888888888776653221  358899999886 8999999999999999654  65 66799999999999 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          139 KDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      |+.++|+..|++++..+|+ +.+...+
T Consensus       222 Gr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          222 GNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             TCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            9999999999999999999 7665443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.97  E-value=4.2e-10  Score=92.32  Aligned_cols=93  Identities=11%  Similarity=-0.022  Sum_probs=74.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLY  130 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~------~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~l  130 (167)
                      .+|...+++++|+.+|++++++.|....      ++.+++.++. ..+++++|+.+|++++++.|..      +.++..+
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  309 (411)
T 4a1s_A          231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL  309 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4677788888899999888888775433      7778888776 7888889999888888887754      6778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          131 ADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       131 A~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      |.++.. ++++++|+.+|++++++.|.
T Consensus       310 a~~~~~-~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          310 GNTYTL-LHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence            888888 88888888888888887553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.93  E-value=1.3e-09  Score=89.90  Aligned_cols=98  Identities=13%  Similarity=-0.146  Sum_probs=82.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP------GDGNILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n-------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P------~~~~al~~  129 (167)
                      .+|...+++++|+.+|++|+++.+..       +.+++++|.++. ..+++++|+++|++|+++.+      ..+.++.+
T Consensus       149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  227 (378)
T 3q15_A          149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLN  227 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            46788899999999999999986542       457788999886 89999999999999999743      23467889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHH
Q 046296          130 YADLIWQAHKDASRAESYFDQAVK-----SAPDDWLNL  162 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~-----l~P~~~~~l  162 (167)
                      +|.++.. ++++++|+.+|++|++     .+|..+.++
T Consensus       228 lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  264 (378)
T 3q15_A          228 IANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVL  264 (378)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence            9999999 9999999999999999     666655444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.93  E-value=3.9e-09  Score=72.74  Aligned_cols=71  Identities=11%  Similarity=0.110  Sum_probs=60.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG--DGNILSLYADLI  134 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~--~~~al~~lA~~l  134 (167)
                      .+|...+++++|+.+|+++++++|+++.++++++.++. ..+++++|+.+|+++++++|.  +..++..+..++
T Consensus        27 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l   99 (115)
T 2kat_A           27 KTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL   99 (115)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            46788899999999999999999999999999999987 899999999999999999884  444444444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.92  E-value=7.6e-09  Score=76.53  Aligned_cols=91  Identities=10%  Similarity=0.026  Sum_probs=75.3

Q ss_pred             hcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHc
Q 046296           66 NNNHGSSSTDAYNEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAIL------ANPGDGNILSLYADLIWQAH  138 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P-~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~------l~P~~~~al~~lA~~l~~~~  138 (167)
                      +..+++++|+..++.... +| ..+.++..++.++. ..+++++|+.+|+++++      ..|..+.++.++|.++.. +
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~   79 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-A   79 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-T
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-c
Confidence            456899999996665544 55 67899999999887 89999999999999999      456677889999999999 9


Q ss_pred             CCHHHHHHHHHHHHHh---CCCCH
Q 046296          139 KDASRAESYFDQAVKS---APDDW  159 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l---~P~~~  159 (167)
                      +++++|+.+|++++++   .|+++
T Consensus        80 g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           80 GNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCccH
Confidence            9999999999999998   56454

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.91  E-value=4.4e-09  Score=90.64  Aligned_cols=97  Identities=12%  Similarity=-0.059  Sum_probs=80.9

Q ss_pred             hhcCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHH
Q 046296           65 SNNNHGSSSTDAYNEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPGD---GNILS  128 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l-----~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-----~P~~---~~al~  128 (167)
                      +.+++++++|+..|+++|++     .|+++   .++.+++.++. .++++++|+.+++++|++     -|++   +..++
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            34568999999999999975     56675   56778888886 799999999999999976     3455   46677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 046296          129 LYADLIWQAHKDASRAESYFDQAVKS-----APDDWLNLI  163 (167)
Q Consensus       129 ~lA~~l~~~~g~~~eA~~~~e~Al~l-----~P~~~~~l~  163 (167)
                      ++|.+++. +|++++|+.+|++|+++     .|++|.+..
T Consensus       376 nLa~~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          376 KVGKLQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            89999999 99999999999999985     788886653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.87  E-value=9.6e-09  Score=86.84  Aligned_cols=93  Identities=8%  Similarity=-0.039  Sum_probs=85.9

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-----
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR-G-DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS-----  142 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~-g-d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~-----  142 (167)
                      .+++++.++.++|+.+|++..+|+....++. .. + +++++++++.++|+++|+|..+|.....++.. .+.++     
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~-~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~-l~~~~~~~~~  181 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLD-RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH-FSTLGRISEA  181 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH-HHHTTCCCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccccccchh
Confidence            5999999999999999999999999999887 45 6 89999999999999999999999999999988 77777     


Q ss_pred             ---HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 ---RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 ---eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                         +++++++++|+++|.|..++.+
T Consensus       182 ~~~eELe~~~k~I~~dp~N~SAW~~  206 (349)
T 3q7a_A          182 QWGSELDWCNEMLRVDGRNNSAWGW  206 (349)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHH
Confidence               9999999999999999887743

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.82  E-value=1.9e-08  Score=81.91  Aligned_cols=92  Identities=14%  Similarity=0.043  Sum_probs=79.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEAN--------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG-----DGNILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~--------P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~-----~~~al~~  129 (167)
                      .+|...+++++|+.+|++++++.        |....++.+++.++. ..+++++|+.++++++++.|.     ...++..
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  179 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  179 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence            46778899999999999999986        344667888998887 799999999999999999875     3567888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      ++.++.. .|++++|+.++++++++.+
T Consensus       180 la~~~~~-~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          180 LIQCSLA-RGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHHHh
Confidence            9999999 9999999999999998743

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.82  E-value=6.9e-09  Score=84.60  Aligned_cols=92  Identities=14%  Similarity=0.104  Sum_probs=66.6

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PGDGNILSL  129 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--------P~~~~al~~  129 (167)
                      +|...+++++|+.+|++++++.|...      .++.+++.++. ..|++++|+.+|++++++.        |....++.+
T Consensus        62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  140 (373)
T 1hz4_A           62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI  140 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence            45566788888888888887765432      23566777665 6788888888888888764        334556677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      ++.+++. +|++++|+.++++++++.|.
T Consensus       141 la~~~~~-~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          141 RAQLLWA-WARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHH-hcCHHHHHHHHHHHHHHhhc
Confidence            8888887 88888888888888887764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.82  E-value=2.6e-08  Score=69.01  Aligned_cols=68  Identities=13%  Similarity=0.108  Sum_probs=61.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEAN-------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYA  131 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~-------P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA  131 (167)
                      ..++.++++..|+.+|++|++..       +..+.++.+|+.+++ ..+++++|+.++++|++++|+++.++.++.
T Consensus        13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            56788899999999999999974       356889999999997 899999999999999999999999988887

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.82  E-value=2.8e-08  Score=84.84  Aligned_cols=90  Identities=16%  Similarity=0.095  Sum_probs=71.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPGDGNILSLYADLIWQ---AHKDAS  142 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~----~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---~~g~~~  142 (167)
                      ++++|+.+|+++++.  .++.++++++.++. .    .+++++|+.+|++|++.  .++.++.++|.++..   +.++++
T Consensus       346 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~  420 (490)
T 2xm6_A          346 EHKKAVEWFRKAAAK--GEKAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYV  420 (490)
T ss_dssp             HHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence            678888888888876  67888888888775 5    68889999999998875  468888888888875   257899


Q ss_pred             HHHHHHHHHHHhCCC---CHHHHHh
Q 046296          143 RAESYFDQAVKSAPD---DWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~---~~~~l~~  164 (167)
                      +|+.+|++|++.+|+   ++.++.+
T Consensus       421 ~A~~~~~~A~~~~~~~~~~~~a~~~  445 (490)
T 2xm6_A          421 QAWAWFDTASTNDMNLFGTENRNIT  445 (490)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCcCCHHHHHH
Confidence            999999999998854   5555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.76  E-value=2.6e-08  Score=85.21  Aligned_cols=93  Identities=16%  Similarity=0.102  Sum_probs=66.7

Q ss_pred             hhhcCC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Q 046296           64 YSNNNH---GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR----GDFAKAEELCGRAILANPGDGNILSLYADLIW-  135 (167)
Q Consensus        64 ~y~~~g---~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~----gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~-  135 (167)
                      +|...+   ++++|+.+|+++++..|.++..+++++.++. ..    .++++|+.+|++|+   |.++.+++++|.+++ 
T Consensus       185 ~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~  260 (452)
T 3e4b_A          185 VYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYD  260 (452)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHH
T ss_pred             HHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence            444556   7788888888888888888887777887664 23    57888888888876   788888888887743 


Q ss_pred             -HHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          136 -QAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       136 -~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                       ...+++++|+.+|++|++..  ++.++
T Consensus       261 ~~~~~d~~~A~~~~~~Aa~~g--~~~A~  286 (452)
T 3e4b_A          261 FPELGDVEQMMKYLDNGRAAD--QPRAE  286 (452)
T ss_dssp             SGGGCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCC--CHHHH
Confidence             22678888888888877653  44443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.76  E-value=6.7e-08  Score=70.71  Aligned_cols=93  Identities=12%  Similarity=-0.023  Sum_probs=81.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDF---AKAEELCGRAILAN-P-GDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~---e~A~~~~~rAl~l~-P-~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      .....+...|.++++.++.++.+.++||+.|. ...+.   .+++.+++..++.+ | ..-+.++.+|..+++ .++|++
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv-~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~   92 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHT-TSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHH
Confidence            45678889999999999999999999999886 55544   55999999999987 6 677899999999999 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHH
Q 046296          144 AESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l~  163 (167)
                      |+.+++.+|+++|+|..+..
T Consensus        93 A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999987653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.72  E-value=4.7e-08  Score=83.65  Aligned_cols=86  Identities=22%  Similarity=0.215  Sum_probs=57.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----CH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLK--EVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK-----DA  141 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~--~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g-----~~  141 (167)
                      .++++|+.+|++++   |.++.++++++.+++  ...+++++|+.+|++|++.  .++.+++++|.++..  |     ++
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~--G~g~~~d~  303 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYE--GKWVPADA  303 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH--CSSSCCCH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc--CCCCCCCH
Confidence            46777777777776   777777777776633  2466777777777777643  467777777776654  4     77


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHh
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++|+.+|++|+   |.++.++.+
T Consensus       304 ~~A~~~~~~Aa---~g~~~A~~~  323 (452)
T 3e4b_A          304 KAAEAHFEKAV---GREVAADYY  323 (452)
T ss_dssp             HHHHHHHHTTT---TTCHHHHHH
T ss_pred             HHHHHHHHHHh---CCCHHHHHH
Confidence            77777777776   666655433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.65  E-value=2.3e-07  Score=67.15  Aligned_cols=85  Identities=18%  Similarity=0.105  Sum_probs=71.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ---AHKDASRAE  145 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---~~g~~~eA~  145 (167)
                      .++++|+.+|+++.+..+..+.    ++.++. ....+++|+++|++|.+.  .++.+++++|.++..   +.+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            5799999999999998755544    787775 677899999999999987  899999999999875   257999999


Q ss_pred             HHHHHHHHhCCCCHHHH
Q 046296          146 SYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       146 ~~~e~Al~l~P~~~~~l  162 (167)
                      .+|++|.+.  .++.+.
T Consensus        82 ~~~~~Aa~~--g~~~a~   96 (138)
T 1klx_A           82 QYYSKACGL--NDQDGC   96 (138)
T ss_dssp             HHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHcC--CCHHHH
Confidence            999999987  445444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.64  E-value=3.3e-07  Score=78.14  Aligned_cols=80  Identities=14%  Similarity=0.129  Sum_probs=36.8

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---C
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR-----GDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK---D  140 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~-----gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g---~  140 (167)
                      +++++|+.+|+++++.  .++.++++++.++. ..     +++++|+.+|++|++.  .++.++++++.++.. .+   +
T Consensus       273 ~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~-~g~~~~  346 (490)
T 2xm6_A          273 KEPLKALEWYRKSAEQ--GNSDGQYYLAHLYD-KGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFR-LGSEEE  346 (490)
T ss_dssp             CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHH-HCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-SCCHHH
T ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-cCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh-CCCccc
Confidence            3455555555554432  34444445554443 23     4455555555554443  334444444444444 33   4


Q ss_pred             HHHHHHHHHHHHHh
Q 046296          141 ASRAESYFDQAVKS  154 (167)
Q Consensus       141 ~~eA~~~~e~Al~l  154 (167)
                      +++|+++|++|++.
T Consensus       347 ~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          347 HKKAVEWFRKAAAK  360 (490)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            44444444444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.63  E-value=1.4e-07  Score=64.80  Aligned_cols=54  Identities=15%  Similarity=0.039  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN  125 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~  125 (167)
                      .++|..+|+++|+++|+++.+++.+|..++ ..++|++|+.+++++++.+|.++.
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcc
Confidence            799999999999999999999999999987 799999999999999999998543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.59  E-value=2.8e-08  Score=81.75  Aligned_cols=90  Identities=10%  Similarity=-0.137  Sum_probs=78.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHHcCC
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG-D-GNILSLYADLIWQAHKD  140 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~-~-~~al~~lA~~l~~~~g~  140 (167)
                      .++...+++++|.+.|+.++...|.++ +++.++.++. ..+++++|+.+|++++...+. . ..+++++|.++.. +|+
T Consensus       110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG~  186 (282)
T 4f3v_A          110 ACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LAL  186 (282)
T ss_dssp             HHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CCC
Confidence            346777999999999999999999999 9999998876 899999999999988775322 1 4589999999999 999


Q ss_pred             HHHHHHHHHHHHHhC
Q 046296          141 ASRAESYFDQAVKSA  155 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~  155 (167)
                      +++|+.+|++++...
T Consensus       187 ~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          187 FTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999999654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.58  E-value=7.7e-08  Score=84.37  Aligned_cols=91  Identities=10%  Similarity=0.084  Sum_probs=76.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPGDGNI---  126 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l-----~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-----~P~~~~a---  126 (167)
                      .+|..++++++|+.+|+++|++     -|++|   ..++++|.++. .+|++++|+.+|++|+++     -|++|.+   
T Consensus       359 ~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  437 (490)
T 3n71_A          359 EVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW-HAGHIEVGHGMICKAYAILLVTHGPSHPITKDL  437 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence            4788899999999999999987     46665   56789999887 899999999999999976     4676654   


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSA  155 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~  155 (167)
                      +.+++.++.+ ++.+++|+..|++|.+..
T Consensus       438 ~~~l~~~~~e-~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          438 EAMRMQTEME-LRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            4577778888 999999999999987743

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.43  E-value=5.5e-07  Score=74.94  Aligned_cols=98  Identities=10%  Similarity=-0.036  Sum_probs=53.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPG----NALLLGNY--ARFLKEVRG--DFAKAEELCGRAILANPG--DGNILSLYAD  132 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~----n~~~l~~l--A~~l~~~~g--d~e~A~~~~~rAl~l~P~--~~~al~~lA~  132 (167)
                      ++|.++++.+.|.+.++++.+.+|+    +-..+..+  +++.. ..+  ++.+|...|+++....|+  .+..+++   
T Consensus       144 qi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l-~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---  219 (310)
T 3mv2_B          144 EVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF-ATNKETATSNFYYYEELSQTFPTWKTQLGLLN---  219 (310)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---
Confidence            4556666666666666666666662    11122222  22222 233  566666666666655554  2333333   


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHhc
Q 046296          133 LIWQAHKDASRAESYFDQAVKS----------APDDWLNLIKL  165 (167)
Q Consensus       133 ~l~~~~g~~~eA~~~~e~Al~l----------~P~~~~~l~~y  165 (167)
                      ++.. ++++++|++.+++++++          +|+++.++.|.
T Consensus       220 ~~~~-~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~  261 (310)
T 3mv2_B          220 LHLQ-QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ  261 (310)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence            4555 67777777777766655          36666666543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.42  E-value=7.8e-07  Score=74.03  Aligned_cols=93  Identities=11%  Similarity=0.079  Sum_probs=58.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPG----DGNILSLY--ADLI  134 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P--~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~----~~~al~~l--A~~l  134 (167)
                      .+|...+++++|++++.+.|..+|  .+.+++..++.++. .+++.+.|.+.+++..+++|+    +-.++..+  +++.
T Consensus       108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~  186 (310)
T 3mv2_B          108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIK  186 (310)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHH
Confidence            345566777777777777777765  66666666666664 677777777777777777772    12222233  3344


Q ss_pred             HHHcC--CHHHHHHHHHHHHHhCCC
Q 046296          135 WQAHK--DASRAESYFDQAVKSAPD  157 (167)
Q Consensus       135 ~~~~g--~~~eA~~~~e~Al~l~P~  157 (167)
                      +. .+  ++++|..+|+++.+..|+
T Consensus       187 l~-~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          187 FA-TNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HH-HTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HH-hCCccHHHHHHHHHHHHHhCCC
Confidence            44 44  677777777777666665

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.37  E-value=2.2e-06  Score=77.94  Aligned_cols=81  Identities=5%  Similarity=-0.089  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296           72 SSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAE-ELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQ  150 (167)
Q Consensus        72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~-~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~  150 (167)
                      ++....|++||...|.++.+|..++.++. ..++.++|. ..|++|+...|.+..++..++.+... .+++++|.++|++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~-~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQG-EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence            45678899999999999999999999886 788889997 99999999999999999999999998 9999999999999


Q ss_pred             HHHh
Q 046296          151 AVKS  154 (167)
Q Consensus       151 Al~l  154 (167)
                      ++..
T Consensus       404 ~l~~  407 (679)
T 4e6h_A          404 CIDR  407 (679)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9985

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.30  E-value=4.5e-06  Score=69.10  Aligned_cols=78  Identities=10%  Similarity=-0.010  Sum_probs=63.4

Q ss_pred             hCCCCHHHHHHHHHHHHHH----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-----CCHHHHHH
Q 046296           84 ANPGNALLLGNYARFLKEV----RG------DFAKAEELCGRAILANPG--DGNILSLYADLIWQAH-----KDASRAES  146 (167)
Q Consensus        84 l~P~n~~~l~~lA~~l~~~----~g------d~e~A~~~~~rAl~l~P~--~~~al~~lA~~l~~~~-----g~~~eA~~  146 (167)
                      .+|+++.+++..+..+...    .+      ...+|+..++|||+++|+  +..++..++.+|.. .     |+.++|++
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~-vPp~~gGd~ekA~~  225 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA-APESFGGGMEKAHT  225 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH-SCTTTTCCHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh-CCCccCCCHHHHHH
Confidence            4667788888877765421    12      268999999999999999  77799999999887 5     99999999


Q ss_pred             HHHHHHHhCCCC-HHHH
Q 046296          147 YFDQAVKSAPDD-WLNL  162 (167)
Q Consensus       147 ~~e~Al~l~P~~-~~~l  162 (167)
                      +|++||+++|+. ..+.
T Consensus       226 ~ferAL~LnP~~~id~~  242 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHH  242 (301)
T ss_dssp             HHHHHHHHCCTTCSHHH
T ss_pred             HHHHHHHhCCCCCchHH
Confidence            999999999975 5444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.30  E-value=1.7e-06  Score=65.13  Aligned_cols=63  Identities=10%  Similarity=-0.034  Sum_probs=56.9

Q ss_pred             ChHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           70 GSSSTDAYNEKMIEAN-P-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~-P-~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      ++++++.+|+.+++.+ | ++.++++++|..++ ..++|++|+++++++|+++|+|..+....-.+
T Consensus        50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            6789999999999999 8 67999999999987 89999999999999999999999888765443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.28  E-value=5.1e-06  Score=68.37  Aligned_cols=91  Identities=12%  Similarity=0.094  Sum_probs=75.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAILA------NPGDGNILSLYA  131 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~------n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l------~P~~~~al~~lA  131 (167)
                      ++...+++++|+.++++++...+.      -..++.++|.++. ..+++++|+.++++++..      .|....++..++
T Consensus       104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~  182 (434)
T 4b4t_Q          104 FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLES  182 (434)
T ss_dssp             HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            344567889999999998876443      2567889999886 799999999999999876      345578888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          132 DLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       132 ~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      .++.. ++++++|+.+|++++.+.|
T Consensus       183 ~~~~~-~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          183 KVYHK-LRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-hCcHHHHHHHHHHHHHHhh
Confidence            99999 9999999999999998743

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.20  E-value=4.6e-05  Score=56.73  Aligned_cols=91  Identities=11%  Similarity=-0.108  Sum_probs=73.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILANP-GDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g---d~e~A~~~~~rAl~l~P-~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      ++......|.+-+. ++-++.+.++||+.|. ...   +..+++.+++..++.+| ..-+.++.+|..+++ .++|++|+
T Consensus        21 eL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv-~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar   97 (144)
T 1y8m_A           21 QLEILRQQVVSEGG-PTATIQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAK   97 (144)
T ss_dssp             HHHHHHHHHHHTTS-TTSCHHHHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHH
T ss_pred             HHHHHHHHHHHhcc-CCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHH
Confidence            34455555554322 3668999999999886 444   45789999999999999 567889999999999 99999999


Q ss_pred             HHHHHHHHhCCCCHHHHH
Q 046296          146 SYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       146 ~~~e~Al~l~P~~~~~l~  163 (167)
                      ++.+.+|++.|+|..+..
T Consensus        98 ~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           98 RYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             HHHHHHHHTCCCCHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHH
Confidence            999999999999987653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.16  E-value=1.9e-05  Score=58.18  Aligned_cols=90  Identities=11%  Similarity=-0.102  Sum_probs=72.8

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHH
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILANP-GDGNILSLYADLIWQAHKDASRAE  145 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g---d~e~A~~~~~rAl~l~P-~~~~al~~lA~~l~~~~g~~~eA~  145 (167)
                      ++....+-|++-+ ...-.+.+.++||+.|. ...   +..+++.+++..++.+| ..-+.++.+|..+++ .++|++|+
T Consensus        22 eL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv-~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar   98 (134)
T 3o48_A           22 QLEILRQQVVSEG-GPTATIQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAK   98 (134)
T ss_dssp             HHHHHHHHHHHTT-GGGSCHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCChhhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHH
Confidence            4455555555533 33336899999999886 444   35689999999999999 457899999999999 99999999


Q ss_pred             HHHHHHHHhCCCCHHHH
Q 046296          146 SYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       146 ~~~e~Al~l~P~~~~~l  162 (167)
                      ++.+.+|++.|+|..+.
T Consensus        99 ~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           99 RYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             HHHHHHHTTCTTCHHHH
T ss_pred             HHHHHHHhhCCCCHHHH
Confidence            99999999999998765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.16  E-value=1.7e-05  Score=72.16  Aligned_cols=93  Identities=15%  Similarity=0.130  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHHHHH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKD---ASRAESY  147 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~---~~eA~~~  147 (167)
                      ..+-+..|+++|..+|.|...|..|+..+. ..++++.+...|++++...|.....|..|+..... .++   ++.+..+
T Consensus        48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~-~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~-~~~~~~~~~v~~l  125 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHV-SLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFD-KMEELDAAVIEPV  125 (679)
T ss_dssp             CSCHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-C--CCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-hCCcchHHHHHHH
Confidence            445677899999999999999999999875 78899999999999999999999999999999887 888   9999999


Q ss_pred             HHHHHHhCC--CCHHHHHhc
Q 046296          148 FDQAVKSAP--DDWLNLIKL  165 (167)
Q Consensus       148 ~e~Al~l~P--~~~~~l~~y  165 (167)
                      |++||...|  .++.+|..|
T Consensus       126 feRal~~~~~~~sv~LW~~Y  145 (679)
T 4e6h_A          126 LARCLSKELGNNDLSLWLSY  145 (679)
T ss_dssp             HHHHTCSSSCCCCHHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHH
Confidence            999999984  566666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.02  E-value=1e-05  Score=66.57  Aligned_cols=90  Identities=16%  Similarity=0.076  Sum_probs=74.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---GD----GNILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P---~~----~~al~~  129 (167)
                      .+|...+++++|+.++++++..      .|....++..++.++. ..+++++|..++++|+.+.|   ..    ..++..
T Consensus       143 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  221 (434)
T 4b4t_Q          143 TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH-KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM  221 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence            5788889999999999999887      3444678889998886 89999999999999998753   33    345566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      ++.++.. .+++++|..+|.++++.
T Consensus       222 ~g~~~~~-~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          222 SGILHCE-DKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHTTS-SSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHhHHHHHHHHHHHHHH
Confidence            7777777 89999999999999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.00  E-value=2.4e-05  Score=76.36  Aligned_cols=65  Identities=14%  Similarity=0.052  Sum_probs=60.2

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 046296           86 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  157 (167)
Q Consensus        86 P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~  157 (167)
                      .+.+.+|+.+|.++. ..+++++|+.+|.+|     +++..+..++.++.+ .+++++|+++|+.|++..|+
T Consensus      1102 vn~p~vWsqLAKAql-~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQL-QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             cCCHHHHHHHHHHHH-hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhccc
Confidence            478999999999886 899999999999887     999999999999999 99999999999999998865

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.91  E-value=9.3e-05  Score=55.80  Aligned_cols=88  Identities=14%  Similarity=0.079  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           72 SSTDAYNEKMIEANPGN--------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        72 d~A~~~~~kAL~l~P~n--------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      ++-...|++|+..-|-.        ...|..||.+.  ..+|.++|...|+.++.+....+-+|..+|.+-.. +++..+
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~--ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiR-qgnl~k  112 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK--AIQEPDDARDYFQMARANCKKFAFVHISFAQFELS-QGNVKK  112 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH--HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cccHHH
Confidence            78889999999987753        45677888663  46999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q 046296          144 AESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l  162 (167)
                      |.+.+.+||.+.|.....+
T Consensus       113 ARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A          113 SKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHHHhccCCCcHHHH
Confidence            9999999999999877654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.89  E-value=2.7e-05  Score=59.31  Aligned_cols=100  Identities=16%  Similarity=0.068  Sum_probs=76.1

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----------
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNAL---------LLGNYARFLKEVRGDFAKAEELCGRAILAN---PG----------  122 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~---------~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~---P~----------  122 (167)
                      ....+.|+.|+.....++.+..+++.         ++..+|..++ ..++|.+|+..|++||.+.   |+          
T Consensus        30 L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf-~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~  108 (167)
T 3ffl_A           30 MAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLF-HDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN  108 (167)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred             HHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            34557899999999887777544443         7788899998 7999999999999997642   11          


Q ss_pred             ------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCCCHHHHHhcc
Q 046296          123 ------------DGNILSLYADLIWQAHKDASRAESYFDQA--VKSAPDDWLNLIKLY  166 (167)
Q Consensus       123 ------------~~~al~~lA~~l~~~~g~~~eA~~~~e~A--l~l~P~~~~~l~~yy  166 (167)
                                  +.++.+.+|.|+.+ .+++.+|+.+++..  -...|.-...++++|
T Consensus       109 ~ss~p~s~~~~~e~Elkykia~C~~~-l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          109 SASTPQSQCLPSEIEVKYKLAECYTV-LKQDKDAIAILDGIPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             --------CCCCHHHHHHHHHHHHHH-TTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred             cCCCcccccccchHHHHHHHHHHHHH-HCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence                        12688999999999 99999999998874  334555556667776

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.89  E-value=3.9e-05  Score=74.82  Aligned_cols=91  Identities=9%  Similarity=0.022  Sum_probs=72.4

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--------------------  121 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P--------------------  121 (167)
                      +..+++.+++++|+.+|++|        ..|..++.++. ..+++++|++.+++|....+                    
T Consensus      1202 Gd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLv-kLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A         1202 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred             HHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHH-HhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHH
Confidence            35677889999999999996        47788888886 78999999999999854443                    


Q ss_pred             -----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          122 -----GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       122 -----~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                           .+++.+..++..|.. +|.|++|+.+++++|.++|.+...+
T Consensus      1273 gl~Iiv~~deLeeli~yYe~-~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A         1273 GLHIVVHADELEELINYYQD-RGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred             HHhhhcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhccChhHhHHH
Confidence                 244455566667777 9999999999999999998775443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.88  E-value=3.2e-05  Score=67.26  Aligned_cols=88  Identities=9%  Similarity=0.029  Sum_probs=59.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---------------------  121 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P---------------------  121 (167)
                      ..++..+.+++|+.+|.++        ..|..++.++. ..+++++|++.+++|.  +|                     
T Consensus       130 d~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~-~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~  198 (449)
T 1b89_A          130 DRCYDEKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQM  198 (449)
T ss_dssp             -------CTTTHHHHHHHT--------TCHHHHHHHHH-TTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHH-HhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHH
Confidence            4667778899999999877        35777888887 7888888888888882  22                     


Q ss_pred             ------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 046296          122 ------GDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       122 ------~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                            .+|.-+..+..+|.. .|++++|+.++++++.++|.....+
T Consensus       199 ~~l~L~~~ad~l~~lv~~Yek-~G~~eEai~lLe~aL~le~ah~~~f  244 (449)
T 1b89_A          199 CGLHIVVHADELEELINYYQD-RGYFEELITMLEAALGLERAHMGMF  244 (449)
T ss_dssp             TTTTTTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             HHHHHHhCHhhHHHHHHHHHH-CCCHHHHHHHHHHHhCCcHHHHHHH
Confidence                  122222334455666 8999999999999999998775444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.88  E-value=3.1e-05  Score=66.76  Aligned_cols=68  Identities=13%  Similarity=0.027  Sum_probs=56.7

Q ss_pred             cchhhcCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPGDGNILS  128 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l-----~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-----~P~~~~al~  128 (167)
                      +.+|..++++++|+.+|+++|++     -|++|   ..++++|.++. .++++++|+.+|++|+++     -|++|.+..
T Consensus       347 a~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          347 MGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM-GLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            35788999999999999999987     45555   56789999887 899999999999999986     588887654


Q ss_pred             HH
Q 046296          129 LY  130 (167)
Q Consensus       129 ~l  130 (167)
                      ..
T Consensus       426 l~  427 (433)
T 3qww_A          426 IK  427 (433)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.81  E-value=5.5e-05  Score=64.34  Aligned_cols=59  Identities=12%  Similarity=0.045  Sum_probs=52.1

Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           66 NNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI  126 (167)
Q Consensus        66 ~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a  126 (167)
                      ..++++++|+.++++|++++|+ ..++..++.++. ..|++++|++.|++|++++|..+..
T Consensus       288 l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~-~~G~~~eA~e~~~~AlrL~P~~~t~  346 (372)
T 3ly7_A          288 LVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE-MKGMNREAADAYLTAFNLRPGANTL  346 (372)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred             HhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcChH
Confidence            3468999999999999999975 777888888876 8999999999999999999988743

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.78  E-value=0.00021  Score=62.05  Aligned_cols=58  Identities=16%  Similarity=0.107  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLY  130 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~l  130 (167)
                      .++....|+++|...|..+.+|..|+.++. ..++.++|...|++|+.. |.+...+..+
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~-~~~~~~~ar~i~erAi~~-P~~~~l~~~y  252 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLI-GIGQKEKAKKVVERGIEM-SDGMFLSLYY  252 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            345666777777777777777777777664 677777777777777777 7665444433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.77  E-value=0.00028  Score=61.32  Aligned_cols=98  Identities=13%  Similarity=0.068  Sum_probs=69.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------------------------HHc
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLK---------------------------------------EVR  103 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~---------------------------------------~~~  103 (167)
                      .++.+.++.++|...|++|++. |.+...|..++.++.                                       ...
T Consensus       221 ~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~  299 (493)
T 2uy1_A          221 EYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK  299 (493)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence            3456678999999999999999 999888887766410                                       013


Q ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          104 GDFAKAEELCGRAILANPG-DGNILSLYADLIWQA--HKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       104 gd~e~A~~~~~rAl~l~P~-~~~al~~lA~~l~~~--~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++++.|...|++| + .|. ...  ..+..++++.  .++.+.|.++|+++++.-|+++..+..|
T Consensus       300 ~~~~~AR~i~~~A-~-~~~~~~~--v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y  360 (493)
T 2uy1_A          300 RGLELFRKLFIEL-G-NEGVGPH--VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF  360 (493)
T ss_dssp             HCHHHHHHHHHHH-T-TSCCCHH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHh-h-CCCCChH--HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            4577888888888 3 443 333  3344566551  2368889999999999888888765543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.75  E-value=3e-05  Score=66.59  Aligned_cols=66  Identities=14%  Similarity=0.039  Sum_probs=55.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPGDGNILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l-----~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l-----~P~~~~al~~  129 (167)
                      .+|..++++++|+.+++++|++     -|++|   ..++++|.++. .++++++|+.+|++|+++     -|++|.+...
T Consensus       337 ~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~-~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          337 DACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL-HQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            4688899999999999999976     46665   45788999887 899999999999999976     5777766543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.53  E-value=0.00017  Score=52.50  Aligned_cols=64  Identities=9%  Similarity=-0.032  Sum_probs=55.2

Q ss_pred             CChHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEAN-P-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~-P-~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      .+..+++.+++..++.+ | ...+.++.+|..++ +.++|++|..+++.+|+++|+|..+......+
T Consensus        52 ~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           52 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34567999999999987 6 67789999999887 89999999999999999999999988765443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.49  E-value=0.0018  Score=52.84  Aligned_cols=92  Identities=18%  Similarity=0.133  Sum_probs=77.0

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----------
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL-----------  133 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~-----------  133 (167)
                      ..+.+++++|+...+..|+.+|.|+.....|..+|+ ..|++++|.+-++-+.+++|........|-.+           
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vf   85 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   85 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            456689999999999999999999999999999998 89999999999999999999876554443222           


Q ss_pred             ------------------------HHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          134 ------------------------IWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       134 ------------------------l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                                              ... .|+.++|..+-.+|++..|..
T Consensus        86 aG~~~P~~~g~~~~w~~~ll~Al~~~~-~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           86 QGAATAKVLGENEELTKSLVSFNLSMV-SQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCCC
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHhcCccc
Confidence                                    222 578899999999998888764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.37  E-value=0.00064  Score=49.95  Aligned_cols=64  Identities=6%  Similarity=-0.041  Sum_probs=56.0

Q ss_pred             CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      .+..+++.+++..++.+|. ..+.++.+|..++ +.++|++|..+++++|+++|+|..+......+
T Consensus        57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            3567899999999999994 5788999998887 89999999999999999999999988765443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.35  E-value=3e-05  Score=67.44  Aligned_cols=89  Identities=9%  Similarity=-0.031  Sum_probs=71.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKE-VRGDFAKAEELCGRAILANP-----GDGNILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~-~~gd~e~A~~~~~rAl~l~P-----~~~~al~~lA~~l~~  136 (167)
                      .+|.+.+.+++|+.+|+++|.++|.+...+..++.++.. ..+++.++++.|...|.+.|     .++..|..+..+|..
T Consensus       215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~  294 (449)
T 1b89_A          215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK  294 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            468888999999999999999999999999999876641 12345666677777777778     888889999989988


Q ss_pred             HcCCHHHHHHHHHHHH
Q 046296          137 AHKDASRAESYFDQAV  152 (167)
Q Consensus       137 ~~g~~~eA~~~~e~Al  152 (167)
                       .++|+.|+..+-+..
T Consensus       295 -~~e~d~A~~tm~~h~  309 (449)
T 1b89_A          295 -YEEYDNAIITMMNHP  309 (449)
T ss_dssp             -TTCHHHHHHHHHHST
T ss_pred             -hchHHHHHHHHHhCC
Confidence             999999887665554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.33  E-value=0.001  Score=49.40  Aligned_cols=64  Identities=6%  Similarity=-0.041  Sum_probs=55.5

Q ss_pred             CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      .+..+++.+++..++..|. ..+.++.+|..++ +.++|++|..+++.+|+++|+|..+......+
T Consensus        56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            4567899999999999994 6788899998887 89999999999999999999999887665443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.27  E-value=0.0006  Score=51.37  Aligned_cols=79  Identities=19%  Similarity=0.035  Sum_probs=62.3

Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296           83 EANPGNALLLGNYARFLKEVRGDF------AKAEELCGRAILANPG--------DGNILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        83 ~l~P~n~~~l~~lA~~l~~~~gd~------e~A~~~~~rAl~l~P~--------~~~al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      -+.|+|++.|..|...+. ..++.      ++-+..|+||+..-|-        ....|..||.+ .. .++.++|.++|
T Consensus         7 ~~~p~~yd~W~~yl~llE-~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e-i~D~d~aR~vy   83 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLE-KNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA-IQEPDDARDYF   83 (161)
T ss_dssp             ---CCSHHHHHHHHHHHH-HHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH-HHCGGGCHHHH
T ss_pred             eeCCCCHHHHHHHHHHHH-HcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH-hcCHHHHHHHH
Confidence            468999999999998885 67888      8999999999999885        35677788866 45 69999999999


Q ss_pred             HHHHHhCCCCHHHHHh
Q 046296          149 DQAVKSAPDDWLNLIK  164 (167)
Q Consensus       149 e~Al~l~P~~~~~l~~  164 (167)
                      +.++++....+.++..
T Consensus        84 ~~a~~~hKkFAKiwi~   99 (161)
T 4h7y_A           84 QMARANCKKFAFVHIS   99 (161)
T ss_dssp             HHHHHHCTTBHHHHHH
T ss_pred             HHHHHHhHHHHHHHHH
Confidence            9999985555544433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.0052  Score=56.59  Aligned_cols=59  Identities=17%  Similarity=0.086  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296           91 LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA  151 (167)
Q Consensus        91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A  151 (167)
                      .+..-+.||. .+++++-|+++.++|+.+.|.+...|+.|+.+|.. +++|+.|+-.+.-+
T Consensus       339 LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence            3444566775 78999999999999999999999999999999999 99999998765544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.75  E-value=0.0072  Score=53.06  Aligned_cols=71  Identities=15%  Similarity=0.083  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296           93 GNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus        93 ~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ..++.+.. .+..+..|..+|.+|+.++|++...++.+|.+... +++.-+|+-+|-+++......+.+..|+
T Consensus       156 ~~LGDL~R-Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL  226 (497)
T 1ya0_A          156 VHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred             HHcccHHH-HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence            34555443 56778999999999999999999999999999998 9999999999999998877777766654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.70  E-value=0.024  Score=47.63  Aligned_cols=83  Identities=8%  Similarity=-0.035  Sum_probs=65.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNAL----------------------LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI  126 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~----------------------~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a  126 (167)
                      ++.+.|...+++|+.+....+.                      ++..++..+. ..+++.+|+..+++++..+|-+-.+
T Consensus       129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P~~E~~  207 (388)
T 2ff4_A          129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREPL  207 (388)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            5677888889999988533211                      1112233332 5799999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      +..+-.+|.. .|+..+|++.|+++.+
T Consensus       208 ~~~lm~al~~-~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          208 WTQLITAYYL-SDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            9999999999 9999999999998755

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.63  E-value=0.0066  Score=49.49  Aligned_cols=59  Identities=29%  Similarity=0.359  Sum_probs=55.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      ..+++++|++.+...|+.+|.|+.....|..+|.. .|++++|.+.++.+.+++|+....
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHH
Confidence            57999999999999999999999999999999998 999999999999999999987543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.62  E-value=0.031  Score=48.55  Aligned_cols=83  Identities=17%  Similarity=-0.007  Sum_probs=43.5

Q ss_pred             CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PGDGNILSLYADLIWQAHKDASRAES  146 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~-n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-P~~~~al~~lA~~l~~~~g~~~eA~~  146 (167)
                      +.+++|...|+++.+..-. |...++.+...+. ..+++++|+++|++..+.. +-+..++..+-..+.+ .|+.++|.+
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~  161 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYE  161 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHH
Confidence            3456666666665554211 3444444444444 4566666666666655432 1234444444445555 566666666


Q ss_pred             HHHHHHH
Q 046296          147 YFDQAVK  153 (167)
Q Consensus       147 ~~e~Al~  153 (167)
                      +|++.++
T Consensus       162 l~~~M~~  168 (501)
T 4g26_A          162 VDAHMVE  168 (501)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6665554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.41  E-value=0.006  Score=46.30  Aligned_cols=57  Identities=18%  Similarity=0.226  Sum_probs=46.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           96 ARFLKEVRGDFAKAEELCGRAILANPGDG---------NILSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus        96 A~~l~~~~gd~e~A~~~~~rAl~l~P~~~---------~al~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      ...+. ..+.|+.|+.....++.+..+++         .++..+|.+++. +++|.+|+.+|++||++
T Consensus        27 ik~L~-d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           27 VRDMA-AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             HHHHH-HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHH-HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHH
Confidence            33454 58899999999999877754443         488899999999 99999999999999775

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.95  E-value=0.089  Score=45.63  Aligned_cols=93  Identities=12%  Similarity=0.031  Sum_probs=73.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCC
Q 046296           64 YSNNNHGSSSTDAYNEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-GDGNILSLYADLIWQAHKD  140 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l--~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P-~~~~al~~lA~~l~~~~g~  140 (167)
                      .|.+.+++++|..+|+++.+.  .| +...++.+-..+. ..+++++|.++|++.++..- -+..++..+-.++.+ .|+
T Consensus       114 ~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~-~g~  190 (501)
T 4g26_A          114 LAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFC-RKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD-TKN  190 (501)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTC
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh-CCC
Confidence            567789999999999999886  34 4556666666665 79999999999999887642 355667777788888 999


Q ss_pred             HHHHHHHHHHHHHh--CCCCH
Q 046296          141 ASRAESYFDQAVKS--APDDW  159 (167)
Q Consensus       141 ~~eA~~~~e~Al~l--~P~~~  159 (167)
                      .++|.++|++..+.  .|+..
T Consensus       191 ~d~A~~ll~~Mr~~g~~ps~~  211 (501)
T 4g26_A          191 ADKVYKTLQRLRDLVRQVSKS  211 (501)
T ss_dssp             HHHHHHHHHHHHHHTSSBCHH
T ss_pred             HHHHHHHHHHHHHhCCCcCHH
Confidence            99999999998664  56544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.94  E-value=0.023  Score=49.81  Aligned_cols=68  Identities=13%  Similarity=0.101  Sum_probs=60.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~  136 (167)
                      +..+..|..+|++|+.++|++...++.+|.+.. ..++.-+|+-+|-|++......+.+..++..++-.
T Consensus       165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~-~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh-cccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            456789999999999999999999999998775 68899999999999999888888888888776654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.03  E-value=0.11  Score=45.74  Aligned_cols=65  Identities=14%  Similarity=-0.005  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHH------------HcCCHHHH
Q 046296           85 NPGNALLLGNYARFLKEVRGDFAKAEELCGRA--------ILANPGDGNILSLYADLIWQ------------AHKDASRA  144 (167)
Q Consensus        85 ~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rA--------l~l~P~~~~al~~lA~~l~~------------~~g~~~eA  144 (167)
                      ..+++..|..+|..+. ..++++.|+.+|.++        |.....+...+..++.....            ..+++++|
T Consensus       677 ~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a  755 (814)
T 3mkq_A          677 DESAEMKWRALGDASL-QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGA  755 (814)
T ss_dssp             TCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH
T ss_pred             hhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHH
Confidence            4578999999999875 899999999999985        22234555544444333322            15666666


Q ss_pred             HHHHHH
Q 046296          145 ESYFDQ  150 (167)
Q Consensus       145 ~~~~e~  150 (167)
                      +++|.+
T Consensus       756 ~~~~~~  761 (814)
T 3mkq_A          756 KDLLIK  761 (814)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.10  E-value=0.21  Score=45.88  Aligned_cols=94  Identities=12%  Similarity=0.134  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEV-RGDFAKAEELCGRAILA--------NPGD----------GNILSLYA  131 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~-~gd~e~A~~~~~rAl~l--------~P~~----------~~al~~lA  131 (167)
                      ++.|+.+|++..+.+|.+...+......+.+. ..+--+|+.++.++++.        .|.+          ...+..-+
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa  344 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT  344 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence            57899999999999998765433211111111 12345677777777642        3333          23455557


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          132 DLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       132 ~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      .++.. +++++-|+++.++|+.+.|++...|+.+
T Consensus       345 ~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~L  377 (754)
T 4gns_B          345 NFLLN-RGDYELALGVSNTSTELALDSFESWYNL  377 (754)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHH
Confidence            77787 9999999999999999999998777654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.05  E-value=0.72  Score=35.70  Aligned_cols=73  Identities=15%  Similarity=0.036  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------hCCCCHHHH-HHHHHHHHHHcCCHHHHHHHH
Q 046296           87 GNALLLGNYARFLKEVRGDFAKAEELCGRAIL-----------------ANPGDGNIL-SLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~-----------------l~P~~~~al-~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      +-..+.+.-+.++. ...++.+|+..+++.|+                 ++|.+-+.. ..+|.++.+ .++.+||+.+|
T Consensus        60 NT~Ts~YYk~LCy~-klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq-~g~r~EaI~y~  137 (242)
T 3kae_A           60 NTCTSKYYESLCYK-KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTL-SGYREEGIGHY  137 (242)
T ss_dssp             CBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHH-hcCHHHhhhHh
Confidence            34445555555665 78999999999999982                 245555544 467888888 99999999999


Q ss_pred             HHHHHhCCCCHHH
Q 046296          149 DQAVKSAPDDWLN  161 (167)
Q Consensus       149 e~Al~l~P~~~~~  161 (167)
                      .......|--+.+
T Consensus       138 ~~Sf~~~~lf~~v  150 (242)
T 3kae_A          138 VRSFGKSFLFSPV  150 (242)
T ss_dssp             HHHHHHCCCHHHH
T ss_pred             hhhcCCccccchH
Confidence            9999998865544

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.71  E-value=1.7  Score=33.64  Aligned_cols=59  Identities=8%  Similarity=0.022  Sum_probs=44.5

Q ss_pred             hhcCCChHHHHHHHHHHH--Hh---------------CCCCHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296           65 SNNNHGSSSTDAYNEKMI--EA---------------NPGNALLLG-NYARFLKEVRGDFAKAEELCGRAILANPGDG  124 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL--~l---------------~P~n~~~l~-~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~  124 (167)
                      |.+..++.+|+.++++.|  ++               +|.+.++.. .+|.++. +.++.++|+.+|.+...+.|-.+
T Consensus        72 y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~llt-q~g~r~EaI~y~~~Sf~~~~lf~  148 (242)
T 3kae_A           72 YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCT-LSGYREEGIGHYVRSFGKSFLFS  148 (242)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHH-HhcCHHHhhhHhhhhcCCccccc
Confidence            556789999999999999  22               355555544 5666665 89999999999999877766433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.44  E-value=0.23  Score=41.56  Aligned_cols=54  Identities=13%  Similarity=-0.073  Sum_probs=48.1

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      ++...+++++|+..++++++.+|-+..++..+-.+|+ ..|+..+|++.|+++.+
T Consensus       180 ~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~-~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          180 AEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence            4556789999999999999999999999999888887 79999999999988754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.38  E-value=0.52  Score=40.04  Aligned_cols=90  Identities=12%  Similarity=-0.008  Sum_probs=63.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH----HHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANP--GNA----LLLGNYARFLKEVRGDFAKAEELCGRAILAN---PGDGNI----LSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P--~n~----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~---P~~~~a----l~~  129 (167)
                      .+|+..+++.+|...+.+.++.-.  ++.    +++..-..++. ..+++.++.+++.+|....   +-+|.+    ...
T Consensus       107 ~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~  185 (394)
T 3txn_A          107 ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-ALSNLPKARAALTSARTTANAIYCPPKVQGALDLQ  185 (394)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence            478899999999999999887422  222    23333344454 6899999999999997654   233433    334


Q ss_pred             HHHHHH-HHcCCHHHHHHHHHHHHHh
Q 046296          130 YADLIW-QAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       130 lA~~l~-~~~g~~~eA~~~~e~Al~l  154 (167)
                      -|.+++ . .++|.+|..+|-++++.
T Consensus       186 ~Gi~~l~~-~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          186 SGILHAAD-ERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHh-ccCHHHHHHHHHHHHhc
Confidence            455666 6 89999999999999754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.26  E-value=1.1  Score=33.96  Aligned_cols=48  Identities=8%  Similarity=0.060  Sum_probs=38.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA  116 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rA  116 (167)
                      .+..+.++++.|....++.     ++...|..++.... ..++++-|+.+|.++
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHT
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHh
Confidence            3455668888888876654     78899999998775 799999999998875

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.88  E-value=0.26  Score=41.83  Aligned_cols=90  Identities=11%  Similarity=0.009  Sum_probs=64.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PGDGNI----LSLYADL  133 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n---~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~~~~a----l~~lA~~  133 (167)
                      .+|.+.|++++|.++|.++.......   ..++.....+.. ..+++..+..++.+|-.+-  ..++..    ....|.+
T Consensus       139 ~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l-~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~  217 (429)
T 4b4t_R          139 EYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF-FYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIH  217 (429)
T ss_dssp             HHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHG
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHH
Confidence            56778899999999999988765433   345555555554 6899999999999986552  233332    2344555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh
Q 046296          134 IWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       134 l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      ++. .++|.+|-++|..++..
T Consensus       218 ~l~-~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          218 CLA-VRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             GGG-TSCHHHHHHHHHHHHHH
T ss_pred             HHH-hChHHHHHHHHHHHhcc
Confidence            666 89999999999888765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.39  E-value=2.8  Score=40.14  Aligned_cols=89  Identities=8%  Similarity=-0.131  Sum_probs=66.9

Q ss_pred             hhhcCCChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIE-----ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PGDGNILSLYADLIWQA  137 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~-----l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~-P~~~~al~~lA~~l~~~  137 (167)
                      .|.+.++.++|...|+++.+     ..| |...|+.+-..+. ..|++++|.++|++-.+.. .-|..+|..+-..+.+ 
T Consensus       136 glcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glc-k~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK-  212 (1134)
T 3spa_A          136 CCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWA-RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR-  212 (1134)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-
Confidence            46677899999999977543     244 4666776777777 7999999999999988754 2355556666667777 


Q ss_pred             cCC-HHHHHHHHHHHHHhC
Q 046296          138 HKD-ASRAESYFDQAVKSA  155 (167)
Q Consensus       138 ~g~-~~eA~~~~e~Al~l~  155 (167)
                      .++ .++|.++|++..+..
T Consensus       213 ~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          213 QDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HTCCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHcC
Confidence            776 578999999998753

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.48  E-value=2.2  Score=36.28  Aligned_cols=90  Identities=9%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHH----HHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEAN--PGN----ALLLGNYARFLKEVRGDFAKAEELCGRAIL---ANPGDGN----ILSL  129 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~--P~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~---l~P~~~~----al~~  129 (167)
                      .+|+..+++.+|...++....--  ..+    .+++..-.+++. ..+|+.+|..+++++..   ..|.++.    .+..
T Consensus       145 ~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l-~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~  223 (445)
T 4b4t_P          145 EIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI-LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNL  223 (445)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHH
Confidence            46778899999999998876421  112    244555555554 68999999999999742   3445543    4445


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      .+.++.. .++|.+|-++|.+++..
T Consensus       224 ~~~~~~~-e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          224 LVKISLH-KREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hhhHHHHHHHHHHHHhc
Confidence            6667776 89999999999999874

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.34  E-value=1.2  Score=33.82  Aligned_cols=55  Identities=15%  Similarity=0.085  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296           87 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA  151 (167)
Q Consensus        87 ~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A  151 (167)
                      .|+...+.+|.    ..++++.|.+..+..     ++...|..+|..... +++++-|+.+|+++
T Consensus         6 ~D~~~rF~LAL----~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            6 QDPHIRFDLAL----EYGNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQ   60 (177)
T ss_dssp             SCHHHHHHHHH----HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred             CChHHHHHHHH----hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHh
Confidence            56777777763    589999999998765     788999999999999 99999999999876

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=90.73  E-value=1.8  Score=34.15  Aligned_cols=50  Identities=10%  Similarity=0.040  Sum_probs=35.2

Q ss_pred             CChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l-----~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      ++.++|...|++|+++     .|.+|   -...|++.|+++..++.++|..+.++|+.
T Consensus       139 g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd  196 (227)
T 2o8p_A          139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK  196 (227)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3467778888877753     44444   45567777777778888888888888865

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=90.49  E-value=3.1  Score=32.19  Aligned_cols=79  Identities=9%  Similarity=0.066  Sum_probs=57.8

Q ss_pred             HHHHHHHHh---------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHH
Q 046296           76 AYNEKMIEA---------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PGDGNILSLYADLIWQAHKDASRA  144 (167)
Q Consensus        76 ~~~~kAL~l---------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~--P~~~~al~~lA~~l~~~~g~~~eA  144 (167)
                      ..++++++.         ||....+|..|+.++  .......+...|.......  -..+..|..+|.++.. ++++.+|
T Consensus        58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~--~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A  134 (202)
T 3esl_A           58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF--LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN-AQFFLEA  134 (202)
T ss_dssp             HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh--cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHH
Confidence            466777764         333345566666543  1445778888888877655  5778888899999988 9999999


Q ss_pred             HHHHHHHHHhCCC
Q 046296          145 ESYFDQAVKSAPD  157 (167)
Q Consensus       145 ~~~~e~Al~l~P~  157 (167)
                      .++|+..|+....
T Consensus       135 ~~Vy~~GI~~~A~  147 (202)
T 3esl_A          135 KVLLELGAENNCR  147 (202)
T ss_dssp             HHHHHHHHHTTCB
T ss_pred             HHHHHHHHHcCCc
Confidence            9999999997643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.79  E-value=0.45  Score=41.98  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296           90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus        90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-------~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      ..++.+-+.+ ...+.+++|..+..++.  .|.+       ...++.+|.++.. +.+|.+|.+++.+|++..|.+
T Consensus       232 ~l~nllLRnY-L~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          232 MLINLILRDF-LNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHH-HHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHH-HccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcc
Confidence            3344444444 36889999999999995  4432       4566678999998 999999999999999998865

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=89.50  E-value=1  Score=35.63  Aligned_cols=47  Identities=15%  Similarity=0.115  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           72 SSTDAYNEKMIE-----ANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        72 d~A~~~~~kAL~-----l~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      ++|...|++|++     +.|.||.-   ..|++.|+++..++.++|..+.++|+.
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd  201 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  201 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456666666663     45666643   345666666666777777766666553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.23  E-value=1.2  Score=39.05  Aligned_cols=43  Identities=19%  Similarity=0.115  Sum_probs=34.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296          103 RGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQA  151 (167)
Q Consensus       103 ~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A  151 (167)
                      .+++++|.++.+     ..+++..|..+|.++.+ .++++.|+++|.++
T Consensus       665 ~~~~~~A~~~~~-----~~~~~~~W~~la~~al~-~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          665 VGQLTLARDLLT-----DESAEMKWRALGDASLQ-RFNFKLAIEAFTNA  707 (814)
T ss_dssp             HTCHHHHHHHHT-----TCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHH-----hhCcHhHHHHHHHHHHH-cCCHHHHHHHHHHc
Confidence            566666665532     44788999999999999 99999999999986

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=89.02  E-value=1.2  Score=35.44  Aligned_cols=47  Identities=17%  Similarity=0.216  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIE-----ANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAI  117 (167)
Q Consensus        71 ~d~A~~~~~kAL~-----l~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl  117 (167)
                      .++|...|++|++     +.|.||.-   ..|++.|+++..++.++|..+.++|+
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af  203 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF  203 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3566777777654     46777643   34566677767777777777666665

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=88.83  E-value=3.5  Score=30.66  Aligned_cols=81  Identities=21%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      ++...-+.+|-+   .+-.+..+  ++|.-..-.+++.++-.+.+...+.-+|-+|..+..+|.+|.+ .|+..+|.+++
T Consensus        75 ~NlKrVi~C~~~---~n~~se~v--d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~K-lg~~r~a~eLl  148 (172)
T 1wy6_A           75 QNLKSVVECGVI---NNTLNEHV--NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRR-VGDERDATTLL  148 (172)
T ss_dssp             SCTHHHHHHHHH---TTCCCHHH--HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             hcHHHHHHHHHH---hcchHHHH--HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHH-hcchhhHHHHH
Confidence            456666666644   23333332  3333222368888888888888878888899999999999999 99999999999


Q ss_pred             HHHHHhC
Q 046296          149 DQAVKSA  155 (167)
Q Consensus       149 e~Al~l~  155 (167)
                      .+|.+..
T Consensus       149 ~~AC~kG  155 (172)
T 1wy6_A          149 IEACKKG  155 (172)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9998753

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=88.69  E-value=1.2  Score=35.75  Aligned_cols=48  Identities=13%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHHHH----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIE----ANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        71 ~d~A~~~~~kAL~----l~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      .++|...|++|++    +.|.||.-   ..|++.|+++..++.++|..+.++|+.
T Consensus       172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  226 (260)
T 2npm_A          172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE  226 (260)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3467777777775    46666643   346677777677777777777777664

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=88.67  E-value=1.3  Score=35.46  Aligned_cols=48  Identities=21%  Similarity=0.215  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIE-----ANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        71 ~d~A~~~~~kAL~-----l~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      .++|...|++|++     +.|.||.-   ..|++.|+++..++.++|..+.++|+.
T Consensus       147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd  202 (248)
T 3uzd_A          147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD  202 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567777877764     56778754   346777777778888888877766654

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=88.41  E-value=1.3  Score=35.57  Aligned_cols=48  Identities=19%  Similarity=0.161  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIE-----ANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        71 ~d~A~~~~~kAL~-----l~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      .++|...|++|++     +.|.||.-   ..|++.|+++..++.++|..+.++|+.
T Consensus       151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  206 (260)
T 1o9d_A          151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  206 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4567888888874     57888854   357788888788999988887777763

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=88.22  E-value=2.8  Score=37.50  Aligned_cols=80  Identities=14%  Similarity=0.176  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQ  150 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~  150 (167)
                      ..++...+.+++...+++. ..-.++.... ..++++.|..+|++.-...+..+...+-+|.++.. +|+.++|..+|++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~-~~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~-~g~~~~a~~~~~~  344 (618)
T 1qsa_A          268 TDEQAKWRDDAIMRSQSTS-LIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-RGREAEAKEILHQ  344 (618)
T ss_dssp             CHHHHHHHHHHHHTCCCHH-HHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             ChHHHHHHHhccccCCChH-HHHHHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence            6677778887765444433 3444444443 57999999999987665445678888999999988 9999999999999


Q ss_pred             HHH
Q 046296          151 AVK  153 (167)
Q Consensus       151 Al~  153 (167)
                      +.+
T Consensus       345 ~a~  347 (618)
T 1qsa_A          345 LMQ  347 (618)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            975

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=88.20  E-value=0.74  Score=30.45  Aligned_cols=18  Identities=22%  Similarity=0.250  Sum_probs=13.9

Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 046296          101 EVRGDFAKAEELCGRAIL  118 (167)
Q Consensus       101 ~~~gd~e~A~~~~~rAl~  118 (167)
                      ...+++++|+.+|..||+
T Consensus        22 D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A           22 DKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHH
Confidence            367888888888887775

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=87.75  E-value=0.82  Score=30.33  Aligned_cols=17  Identities=24%  Similarity=0.153  Sum_probs=12.2

Q ss_pred             HcCCHHHHHHHHHHHHH
Q 046296          102 VRGDFAKAEELCGRAIL  118 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~  118 (167)
                      ..+++++|+.+|..||+
T Consensus        31 ~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           31 KEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHH
Confidence            67777777777777665

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=87.35  E-value=1.7  Score=34.99  Aligned_cols=47  Identities=15%  Similarity=0.115  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           72 SSTDAYNEKMIE-----ANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        72 d~A~~~~~kAL~-----l~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      ++|...|++|++     +.|.+|.-   ..|++.|+++..++.++|..+.++|+.
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd  227 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  227 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456667776654     45667643   345666676667777777766666653

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=84.65  E-value=1.6  Score=35.35  Aligned_cols=49  Identities=22%  Similarity=0.330  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHHHH-----h--CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           71 SSSTDAYNEKMIE-----A--NPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        71 ~d~A~~~~~kAL~-----l--~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      .++|...|++|++     +  .|.+|.-   ..|++.|+++..++.++|..+.++|+.-
T Consensus       168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4567777777764     3  5777753   3466777777778888888888887764

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=84.11  E-value=4.5  Score=31.84  Aligned_cols=52  Identities=6%  Similarity=0.017  Sum_probs=41.8

Q ss_pred             cCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296          103 RGDFAKAEELCGRAILA-----NPGD---GNILSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus       103 ~gd~e~A~~~~~rAl~l-----~P~~---~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      .++.+.|...|+.|+++     .|.+   .-...+++.++++.+++.++|..+.++|+..
T Consensus       138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~  197 (227)
T 2o8p_A          138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI  197 (227)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            35678999999999864     3444   4666789999999889999999999999764

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=83.28  E-value=1.7  Score=29.20  Aligned_cols=35  Identities=14%  Similarity=0.135  Sum_probs=27.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      .-.++|+.++++|++.                ...+++++|+.+|..||+.
T Consensus        10 ~~l~~Ai~lv~~Ave~----------------D~~g~y~eAl~~Y~~Aie~   44 (93)
T 1wfd_A           10 SDSTAAVAVLKRAVEL----------------DAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             CHHHHHHHHHHHHHHH----------------HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----------------HHhCCHHHHHHHHHHHHHH
Confidence            4577888888887543                4789999999999888764

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=83.13  E-value=1.5  Score=30.91  Aligned_cols=34  Identities=15%  Similarity=0.171  Sum_probs=26.0

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      .+++|+.++.+|++               . ...+++++|+.+|..||++
T Consensus        14 ~l~kAi~lv~~Ave---------------~-D~ag~y~eAl~lY~~Aie~   47 (117)
T 2cpt_A           14 NLQKAIDLASKAAQ---------------E-DKAGNYEEALQLYQHAVQY   47 (117)
T ss_dssp             HHHHHHHHHHHHHH---------------H-HHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---------------H-HHccCHHHHHHHHHHHHHH
Confidence            36778887777752               2 3689999999999988763

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=82.96  E-value=5.6  Score=33.58  Aligned_cols=92  Identities=10%  Similarity=-0.057  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHhCCCC-HHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHc
Q 046296           71 SSSTDAYNEKMIEANPGN-ALL-----LGNYARFLKEVRGDFAKAEELCGRAILANP--GD----GNILSLYADLIWQAH  138 (167)
Q Consensus        71 ~d~A~~~~~kAL~l~P~n-~~~-----l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P--~~----~~al~~lA~~l~~~~  138 (167)
                      .+.-+..+.++++..-+. ..+     -..++.+++ ..++|.+|.+++.+.++--.  ++    .+++..-..++.. .
T Consensus        75 ~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~-~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-~  152 (394)
T 3txn_A           75 TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYF-DTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-L  152 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-h
Confidence            344455555555543332 222     226788776 79999999999998887421  22    2344445556777 9


Q ss_pred             CCHHHHHHHHHHHHHhC---CCCHHHHHh
Q 046296          139 KDASRAESYFDQAVKSA---PDDWLNLIK  164 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l~---P~~~~~l~~  164 (167)
                      +++.++..+|.+|.+..   |.+|.+.+.
T Consensus       153 ~n~~k~k~~l~~a~~~~~ai~~~p~i~a~  181 (394)
T 3txn_A          153 SNLPKARAALTSARTTANAIYCPPKVQGA  181 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence            99999999999997763   345655443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.50  E-value=1.9  Score=40.90  Aligned_cols=85  Identities=7%  Similarity=-0.152  Sum_probs=57.8

Q ss_pred             chhhcCCChHHHHHHHHHHHH---h-----------------CC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           63 NYSNNNHGSSSTDAYNEKMIE---A-----------------NP---GNALLLGNYARFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~---l-----------------~P---~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      .+|...+++++|..+|++|-.   .                 .+   .-+.++.....+ ++..+.++.++++.+.||+.
T Consensus       850 ~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~L-Fe~~~~~~~vi~fa~lAi~~  928 (1139)
T 4fhn_B          850 LIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKK-LFEESAYIDALEFSLLADAS  928 (1139)
T ss_dssp             HHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHH-HHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Confidence            466778999999999988731   1                 11   112344444444 45789999999999999988


Q ss_pred             CC-CCHH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 046296          120 NP-GDGN----ILSLYADLIWQAHKDASRAESYFD  149 (167)
Q Consensus       120 ~P-~~~~----al~~lA~~l~~~~g~~~eA~~~~e  149 (167)
                      .+ ++..    .|.++-..+.. .++|++|-..+.
T Consensus       929 ~~~~~~~~~~~l~~~iFk~~L~-l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          929 KETDDEDLSIAITHETLKTACA-AGKFDAAHVALM  962 (1139)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHH-HCCSGGGGHHHH
T ss_pred             ccCCChhhHHHHHHHHHHHHHh-hCCHHHHHHHHH
Confidence            75 4432    44555556677 899999866553

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.08  E-value=6.4  Score=37.34  Aligned_cols=78  Identities=13%  Similarity=-0.054  Sum_probs=55.5

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h-----------------CC---CCHHHHHHHHHHHHH
Q 046296           80 KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL---A-----------------NP---GDGNILSLYADLIWQ  136 (167)
Q Consensus        80 kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~---l-----------------~P---~~~~al~~lA~~l~~  136 (167)
                      +.+..-|.++..-+-+|+++. ..+++++|..+|++|-.   .                 .+   .-+..+.....++.+
T Consensus       833 ~l~~~~~~~~~~~yl~g~~~L-~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~  911 (1139)
T 4fhn_B          833 QLIGWLNSDPIAVYLKALIYL-KSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFE  911 (1139)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHH
T ss_pred             HHhhhccCCcHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHH
Confidence            344567888888888999886 89999999999998731   1                 11   122334444444444


Q ss_pred             HcCCHHHHHHHHHHHHHhCC-CCH
Q 046296          137 AHKDASRAESYFDQAVKSAP-DDW  159 (167)
Q Consensus       137 ~~g~~~eA~~~~e~Al~l~P-~~~  159 (167)
                       .+.++.+++..+.||+..+ +++
T Consensus       912 -~~~~~~vi~fa~lAi~~~~~~~~  934 (1139)
T 4fhn_B          912 -ESAYIDALEFSLLADASKETDDE  934 (1139)
T ss_dssp             -TSCCHHHHHHHHHHHHHCCSCCH
T ss_pred             -cCCHHHHHHHHHHHHHhccCCCh
Confidence             8999999999999999865 444

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=81.49  E-value=8.1  Score=28.77  Aligned_cols=49  Identities=6%  Similarity=0.108  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          109 AEELCGRAILAN--PGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       109 A~~~~~rAl~l~--P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      +...|.......  -..+..|..+|.++-. .+++.+|.++|+.+|+....-
T Consensus        79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~-~~~~~~A~~Iy~~Gi~~~A~P  129 (164)
T 2wvi_A           79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEA-RENFRKADAIFQEGIQQKAEP  129 (164)
T ss_dssp             HHHHHHHHHHTTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCc
Confidence            556666666544  5778888899999988 999999999999999986543

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=81.26  E-value=4.9  Score=31.70  Aligned_cols=48  Identities=13%  Similarity=0.000  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          106 FAKAEELCGRAIL-----ANPGDGNIL---SLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       106 ~e~A~~~~~rAl~-----l~P~~~~al---~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      .++|...|++|++     +.|.+|.-+   .+++.++++..++.++|..+.++|+.
T Consensus       146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd  201 (234)
T 2br9_A          146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  201 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3678888888875     468887543   47788888878999998887777765

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=81.02  E-value=7  Score=28.76  Aligned_cols=52  Identities=4%  Similarity=0.034  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296          108 KAEELCGRAILAN--PGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       108 ~A~~~~~rAl~l~--P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      .+...|.......  -..+..+..+|.++.. .+++.+|.++|+..|+....-..
T Consensus        83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~Gi~~~A~P~~  136 (152)
T 4a1g_A           83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEA-QGELQHASAVLQRGIQNQAEPRE  136 (152)
T ss_dssp             CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCBSHH
T ss_pred             CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCccHH
Confidence            3667777666543  5778888899999988 99999999999999998654443

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=80.85  E-value=2.5  Score=27.69  Aligned_cols=34  Identities=12%  Similarity=0.018  Sum_probs=25.4

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           70 GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        70 ~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      -.++|+.+..+|++               . ...+++++|+.+|..|++.
T Consensus         9 ~l~~A~~l~~~Av~---------------~-D~~g~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A            9 FLTKGIELVQKAID---------------L-DTATQYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHHHHHHHHHHHHH---------------H-HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---------------H-HHcCCHHHHHHHHHHHHHH
Confidence            46677777777752               2 3789999999999988863

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.53  E-value=2  Score=36.27  Aligned_cols=64  Identities=16%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANP---GDGNILSLYADLIWQAHKDASRAESYFDQAVKS  154 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P---~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l  154 (167)
                      ..++..+|.++. ..|++++|.++|.++.....   .-.+.+.....+.+. .+++..+..++.+|..+
T Consensus       131 ~~~~~~la~~~~-~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          131 AQAWINLGEYYA-QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             SSCCHHHHHHHH-HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHh
Confidence            456788999887 89999999999999987643   234666666677777 89999999999999665

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=80.42  E-value=5.3  Score=31.57  Aligned_cols=48  Identities=13%  Similarity=0.088  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          106 FAKAEELCGRAIL-----ANPGDGNIL---SLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       106 ~e~A~~~~~rAl~-----l~P~~~~al---~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      .++|...|++|++     +.|.+|.-+   .+++.+|++.+++.++|..+.++|+.
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd  204 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4678888888875     568887544   46788888878999998887766654

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=80.02  E-value=5.5  Score=31.93  Aligned_cols=48  Identities=10%  Similarity=0.043  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHH----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          106 FAKAEELCGRAIL----ANPGDGNI---LSLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       106 ~e~A~~~~~rAl~----l~P~~~~a---l~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      .++|...|++|++    +.|.+|.-   ..+++.+|++.+++.++|..+.++|+.
T Consensus       172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  226 (260)
T 2npm_A          172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE  226 (260)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3678889999886    46777744   347888888878999999888888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.002

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 51.2 bits (122), Expect = 6e-09
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 79  EKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH 138
            + I+A+P +A L  ++   L    GDF +A+E   ++I   P      S    L+  A 
Sbjct: 20  IEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ 78

Query: 139 KDASRAESYFDQAVKSAPDDWLNLIKLYL 167
                A+      V    ++    +  + 
Sbjct: 79  ARKDFAQGAATAKVLGENEELTKSLVSFN 107

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 103 RGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 159
            G   +A EL   AI A+P D ++ S + +L      D  RA+    Q++K  P+  
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIEL-LCIDGDFERADEQLMQSIKLFPEYL 64

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 103 RGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---W 159
            GDF  AE  C +     P +  +L L +  I    +   R+  +   A+K  P     +
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70

Query: 160 LNLIKLYL 167
            NL  +Y 
Sbjct: 71  SNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 76  AYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIW 135
                 +   P +A  L N A   +E +G+  +A  L  +A+   P      S  A  + 
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLAS-VL 349

Query: 136 QAHKDASRAESYFDQAVKSAPDD---WLNLIKLY 166
           Q       A  ++ +A++ +P     + N+    
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 1/60 (1%)

Query: 79  EKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAH 138
            ++    P N  +L   +    +      ++      AI  NP      S   ++  +  
Sbjct: 23  MQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 76  AYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIW 135
               K +E  P  A    N A  L++ +G   +A      AI  +P   +  S   + + 
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384

Query: 136 Q 136
           +
Sbjct: 385 E 385

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 3/83 (3%)

Query: 79  EKMIEANPGNALLLGNYARFLKEV--RGDFAKAEELCGRAILANPGDGNILSLYA-DLIW 135
           +    A   +      YA  L       D  K   L    +     +     ++   +  
Sbjct: 23  QSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82

Query: 136 QAHKDASRAESYFDQAVKSAPDD 158
              K+  +A  Y    +++ P +
Sbjct: 83  YRLKEYEKALKYVRGLLQTEPQN 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.81
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.79
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.76
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.72
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.71
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.7
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.67
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.62
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.62
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.61
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.59
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.54
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.45
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.4
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.39
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.35
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.33
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.32
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.31
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.29
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.27
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.22
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.22
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.15
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.11
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.09
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.01
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.99
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.98
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.98
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.87
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.85
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.83
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.83
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.68
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.62
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.44
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.42
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.38
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.22
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.2
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.16
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.03
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	91.53
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	91.21
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	90.02
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	88.37
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	88.12
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	87.17
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	86.19
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	85.77
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	84.48
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	84.03
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	82.88
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	80.48

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.6e-20  Score=129.93  Aligned_cols=102  Identities=18%  Similarity=0.126  Sum_probs=96.9

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      ++.++..+++++|+.+|+++|+++|+++.+|.++|.++. ..+++++|+..|+++++++|+++.+++++|.++.. ++++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHH-ccCH
Confidence            457888999999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++|+..|+++++++|+++.++..+
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l  111 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGL  111 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999999887553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.1e-19  Score=130.65  Aligned_cols=101  Identities=20%  Similarity=0.063  Sum_probs=96.0

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      ++.|++.+++++|+.+|+++|+++|+++.+|++++.++. ..+++++|+..|++||+++|+++.++..+|.++.. ++++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cCCH
Confidence            357889999999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHh
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++|+..|+++++++|+++.++..
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~  117 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMK  117 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999999999987644

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.4e-19  Score=133.72  Aligned_cols=96  Identities=16%  Similarity=0.042  Sum_probs=91.6

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      |+.|++.+++++|+.+|++||+++|+++.+|+++|.++. ..+++++|+.+|++||+++|+++.+|.++|.+++. ++++
T Consensus        11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~~~   88 (201)
T d2c2la1          11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESY   88 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCH
Confidence            467889999999999999999999999999999999986 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 046296          142 SRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~  159 (167)
                      ++|+.+|++|++++|++.
T Consensus        89 ~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          89 DEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcccH
Confidence            999999999999988644

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=5.6e-18  Score=130.34  Aligned_cols=101  Identities=10%  Similarity=0.038  Sum_probs=95.3

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA  141 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~  141 (167)
                      +.+|.+.+++++|+..|+++|+++|+++.+|+++|.++. ..+++++|+.+|++|++++|+++.++.++|.+++. ++++
T Consensus        44 G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~  121 (259)
T d1xnfa_          44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRD  121 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-HhhH
Confidence            357889999999999999999999999999999999987 89999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHh
Q 046296          142 SRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++|+.+|+++++++|+++.....
T Consensus       122 ~~A~~~~~~al~~~p~~~~~~~~  144 (259)
T d1xnfa_         122 KLAQDDLLAFYQDDPNDPFRSLW  144 (259)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhccccHHHHHH
Confidence            99999999999999999876543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.7e-18  Score=121.38  Aligned_cols=98  Identities=12%  Similarity=0.002  Sum_probs=87.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHc
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR---GDFAKAEELCGRAILANPGD--GNILSLYADLIWQAH  138 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~---gd~e~A~~~~~rAl~l~P~~--~~al~~lA~~l~~~~  138 (167)
                      .+.+.+++++|++.|+++|+++|+++.++++||.+|. ..   +++++|+.+|+++++.+|++  +.+++++|.+++. +
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~-~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~-~   85 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-L   85 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHT-TSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-T
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-H
Confidence            4556678999999999999999999999999999985 33   45678999999999999866  4589999999999 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHH
Q 046296          139 KDASRAESYFDQAVKSAPDDWLNLI  163 (167)
Q Consensus       139 g~~~eA~~~~e~Al~l~P~~~~~l~  163 (167)
                      |++++|+++|+++|+++|++..++.
T Consensus        86 g~~~~A~~~~~~aL~~~P~~~~A~~  110 (122)
T d1nzna_          86 KEYEKALKYVRGLLQTEPQNNQAKE  110 (122)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHhCcCCHHHHH
Confidence            9999999999999999999998764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=1.6e-17  Score=121.68  Aligned_cols=102  Identities=20%  Similarity=0.161  Sum_probs=89.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKE---------VRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~---------~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      ..|.+...+++|+..|++|++++|+|+.++++++.++..         ....+++|+.+|++||+++|+++.+++++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            346667889999999999999999999999999998862         23557899999999999999999999999999


Q ss_pred             HHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          134 IWQAHK-----------DASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       134 l~~~~g-----------~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +.. ++           .|++|+++|++||+++|++..++.++
T Consensus        85 y~~-~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L  126 (145)
T d1zu2a1          85 YTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  126 (145)
T ss_dssp             HHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHH-cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHH
Confidence            987 54           47899999999999999999877554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.70  E-value=6.8e-17  Score=113.07  Aligned_cols=88  Identities=10%  Similarity=-0.077  Sum_probs=84.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..+++++++++|+.+|+++|+++|+++.+|..+|.++. ..+++++|+.+|++||+++|+++.++..+|.++.. +|+++
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~g~~~  101 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNAN  101 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHH-CCCHH
Confidence            46788999999999999999999999999999999986 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHH
Q 046296          143 RAESYFDQAV  152 (167)
Q Consensus       143 eA~~~~e~Al  152 (167)
                      +|+++|+++|
T Consensus       102 ~A~~~l~~~l  111 (112)
T d1hxia_         102 AALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999986

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=119.45  Aligned_cols=101  Identities=14%  Similarity=0.041  Sum_probs=92.1

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNA---------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI  126 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~---------------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a  126 (167)
                      |+.|++++++++|+.+|++||++.|..+               .++.++|.++. ..+++++|+.++++||+++|+++.+
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a   98 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKG   98 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhccccchhh
Confidence            3578889999999999999999988652               55678898886 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      ++.+|.+++. ++++++|+..|++|++++|+++.+...
T Consensus        99 ~~~~g~~~~~-~g~~~~A~~~~~~al~l~P~n~~~~~~  135 (170)
T d1p5qa1          99 LSRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQ  135 (170)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             hHHHHHHHHH-hhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999 999999999999999999999987644

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.67  E-value=6.9e-16  Score=113.24  Aligned_cols=102  Identities=10%  Similarity=-0.040  Sum_probs=91.7

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNA----------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN  125 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~----------------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~  125 (167)
                      |+.+++++++.+|+..|++||++-|...                .+++|+|.++. .++++++|+.+|++||+++|+++.
T Consensus        24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~k  102 (153)
T d2fbna1          24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVK  102 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-Hhcccchhhhhhhccccccchhhh
Confidence            3567888999999999999999876543                36778999887 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          126 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +++.+|.++.. ++++++|+.+|+++++++|+|+.+...+
T Consensus       103 a~~~~g~~~~~-lg~~~~A~~~~~~al~l~P~n~~~~~~l  141 (153)
T d2fbna1         103 ALYKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSY  141 (153)
T ss_dssp             HHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hhHHhHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999 9999999999999999999999876543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.3e-16  Score=123.88  Aligned_cols=98  Identities=13%  Similarity=-0.024  Sum_probs=90.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .++...+++++|+.+|+++++.+|+++.+|+++|.++. ..+++++|+.+|+++++++|+++.++.++|.++.. +++++
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~  257 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHR  257 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHHHHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-CCCHH
Confidence            46778899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +|+.+|++||+++|++..+.
T Consensus       258 ~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         258 EAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHhCCcChhhh
Confidence            99999999999999987654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=3.4e-16  Score=115.97  Aligned_cols=101  Identities=18%  Similarity=0.083  Sum_probs=92.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEA----------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI  126 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l----------------~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a  126 (167)
                      +.++..+++++|+..|+++|++                +|.++.++.++|.++. ..+++++|+..|.+||+++|+++.+
T Consensus        35 ~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a  113 (169)
T d1ihga1          35 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKA  113 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhH
Confidence            4677889999999999999864                5677888999999886 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++++|.++.. ++++++|+..|++|++++|+++.+...+
T Consensus       114 ~~~~g~~~~~-l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1         114 LYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999 9999999999999999999999876543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.9e-16  Score=112.04  Aligned_cols=95  Identities=17%  Similarity=0.268  Sum_probs=85.9

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGN-------ILSLYADLI  134 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~-------al~~lA~~l  134 (167)
                      |+.|+..+++++|+.+|+++|+++|+++.++.++|.++. .++++++|+..|++||+++|+++.       ++..+|.++
T Consensus        11 G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999999999999999999997 899999999999999999998764       556677777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          135 WQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       135 ~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      .. ++++++|+.+|++++..+|+.
T Consensus        90 ~~-~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          90 FK-EEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHCCCH
T ss_pred             HH-hCCHHHHHHHHHHHHhcCCCH
Confidence            87 999999999999999998753

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.62  E-value=2.6e-15  Score=111.37  Aligned_cols=102  Identities=12%  Similarity=0.078  Sum_probs=91.2

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNI  126 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n---------------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~a  126 (167)
                      |+.+++.+++.+|+.+|++||..-|..               ..++.|+|.++. ..+++++|+.+|+++|+++|+++.+
T Consensus        22 G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a  100 (168)
T d1kt1a1          22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKG  100 (168)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHH
Confidence            467888999999999999999865543               245678998887 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          127 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       127 l~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++++|.++.. ++++++|+..|+++++++|+++.++..+
T Consensus       101 ~~~~~~~~~~-l~~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1         101 LYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999 9999999999999999999999876543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.1e-15  Score=120.33  Aligned_cols=95  Identities=17%  Similarity=0.170  Sum_probs=64.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      +++++|+..|++++...|.++.++..++.++. ..+++++|+++|+++++++|+++.++.++|.++.. +|++++|+.+|
T Consensus       285 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  362 (388)
T d1w3ba_         285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHY  362 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCHHHHHHH
T ss_pred             CCHHHHHHHHHhhhccCCccchhhhHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            33334444444444444444444444444443 45778888888888888888888888888888888 88888888888


Q ss_pred             HHHHHhCCCCHHHHHhc
Q 046296          149 DQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       149 e~Al~l~P~~~~~l~~y  165 (167)
                      ++||+++|+++.++.++
T Consensus       363 ~~al~l~P~~~~a~~~l  379 (388)
T d1w3ba_         363 KEAIRISPTFADAYSNM  379 (388)
T ss_dssp             HHHHTTCTTCHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHH
Confidence            88888888888776544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-15  Score=122.75  Aligned_cols=99  Identities=13%  Similarity=0.102  Sum_probs=87.7

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g-d~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ++.+++.+++|+.+|++||+++|++..+|++.+.++. ..+ ++++|+.+++++|+++|+++.+|.+++.++.. +++++
T Consensus        52 ~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~-~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l~~~~  129 (315)
T d2h6fa1          52 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPS  129 (315)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCT
T ss_pred             HHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-hccHH
Confidence            5667788999999999999999999999999998886 444 68999999999999999999999999999988 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+.+|++||+++|++..++.+
T Consensus       130 eAl~~~~kal~~dp~n~~a~~~  151 (315)
T d2h6fa1         130 QELEFIADILNQDAKNYHAWQH  151 (315)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcchHHHHH
Confidence            9999999999999999877654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.5e-15  Score=115.13  Aligned_cols=98  Identities=12%  Similarity=0.063  Sum_probs=92.8

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..+++.|++++|+.+|+++++.+|+++.++..+|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. +++++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~-~g~~~   84 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE-RGQLQ   84 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhh-hcccc
Confidence            45778899999999999999999999999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 046296          143 RAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l  162 (167)
                      +|+.+++++++.+|.+....
T Consensus        85 ~A~~~~~~~~~~~~~~~~~~  104 (388)
T d1w3ba_          85 EAIEHYRHALRLKPDFIDGY  104 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHH
T ss_pred             cccccccccccccccccccc
Confidence            99999999999999887654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-14  Score=115.00  Aligned_cols=96  Identities=9%  Similarity=-0.047  Sum_probs=91.2

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|++++++++|+.+|+++|+.+|+++.+|..+|.++. ..+++++|+.+|++|++++|+++.++..+|.++.. +++++
T Consensus        27 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~  104 (323)
T d1fcha_          27 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISALRRCLELKPDNQTALMALAVSFTN-ESLQR  104 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHhhhccccccccccccccccccc-ccccc
Confidence            46788999999999999999999999999999999887 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q 046296          143 RAESYFDQAVKSAPDDWL  160 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~  160 (167)
                      +|+.+|++++.+.|....
T Consensus       105 ~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_         105 QACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             HHHHHHHHHHHTSTTTGG
T ss_pred             ccccchhhHHHhccchHH
Confidence            999999999999998643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-14  Score=109.58  Aligned_cols=92  Identities=10%  Similarity=-0.007  Sum_probs=84.7

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..+..++++++|+..|++   +.|.++.+|+++|.++. ..+++++|+.+|++||+++|+++.++.++|.++++ +++++
T Consensus        13 ~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hccHH
Confidence            457788999999999986   46778999999999987 89999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 046296          143 RAESYFDQAVKSAPDDW  159 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~  159 (167)
                      +|+..|++||+..|.++
T Consensus        88 ~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHHhCccCc
Confidence            99999999999877653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.6e-15  Score=118.28  Aligned_cols=99  Identities=13%  Similarity=0.044  Sum_probs=90.7

Q ss_pred             hhhcCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           64 YSNNNH-GSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        64 ~y~~~g-~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ++.+.+ ++++|+.+|+++|+++|+++.+|.+++.++. ..+++++|+.+|++||+++|++..+|.+++.++.. .++++
T Consensus        86 ~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~-~~~~~  163 (315)
T d2h6fa1          86 LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWD  163 (315)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCT
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH-HHhhH
Confidence            344544 6899999999999999999999999999886 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHh
Q 046296          143 RAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +|+++|++||+++|++..++.+
T Consensus       164 ~Al~~~~~al~~~p~n~~a~~~  185 (315)
T d2h6fa1         164 NELQYVDQLLKEDVRNNSVWNQ  185 (315)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCccHHHHHH
Confidence            9999999999999999877644

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.9e-14  Score=106.83  Aligned_cols=95  Identities=11%  Similarity=0.024  Sum_probs=87.6

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD----------------GN  125 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~----------------~~  125 (167)
                      +.+|...+++++|+.+|++||+++|+++.+|+++|.++. .++++++|+..|++||...|.+                ..
T Consensus        43 G~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e  121 (192)
T d1hh8a_          43 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE  121 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred             HHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH-hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHH
Confidence            357889999999999999999999999999999999987 8999999999999999986654                47


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          126 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       126 al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                      +++++|.++.. ++++++|++.|++|+++.|+.
T Consensus       122 ~~~n~a~~~~~-~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         122 VLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCc
Confidence            78999999999 999999999999999998875

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.9e-13  Score=102.69  Aligned_cols=95  Identities=16%  Similarity=0.099  Sum_probs=85.3

Q ss_pred             CCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 046296           68 NHGSSSTDAYNEKMIEANP----GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASR  143 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P----~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~e  143 (167)
                      ..+.+.|+..+++++...+    ..+.+++++|.++. ..+++++|+..|++||+++|+++.++.++|.++.. ++++++
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~-~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~~~   89 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDA   89 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHHHH
Confidence            3467889999999998644    45679999999887 89999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHh
Q 046296          144 AESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       144 A~~~~e~Al~l~P~~~~~l~~  164 (167)
                      |+.+|++|++++|+++.++.+
T Consensus        90 A~~~~~~al~~~p~~~~a~~~  110 (259)
T d1xnfa_          90 AYEAFDSVLELDPTYNYAHLN  110 (259)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHH
T ss_pred             hhhhhhHHHHHHhhhhhhHHH
Confidence            999999999999999887654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.40  E-value=8.1e-14  Score=101.85  Aligned_cols=95  Identities=12%  Similarity=-0.043  Sum_probs=82.4

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGNA------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPG-------  122 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n~------------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~-------  122 (167)
                      +..+++.+++++|+..|++||++.|+.+            .++.+++.++. ..+++++|+..++++|++.|.       
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~   94 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQD   94 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhccccccccccc
Confidence            3567788999999999999999998864            67889999987 899999999999999987552       


Q ss_pred             ----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 046296          123 ----DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  158 (167)
Q Consensus       123 ----~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~  158 (167)
                          ...+++++|.++.. +|++++|+..|++|+++.|..
T Consensus        95 ~~~~~~~a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          95 EGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccchhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHHh
Confidence                24467899999999 999999999999999997643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-12  Score=88.30  Aligned_cols=75  Identities=13%  Similarity=0.072  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD-------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~-------~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                      ++-.+++|.+++ ..+++.+|+.+|++|+++.|.+       +.++.++|.+++. +|++++|+.+|++||+++|+++.+
T Consensus         5 addc~~lG~~~~-~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHH
Confidence            445567777776 6788888888888888775543       5677788888887 888888888888888888888877


Q ss_pred             HHhc
Q 046296          162 LIKL  165 (167)
Q Consensus       162 l~~y  165 (167)
                      +.|+
T Consensus        83 ~~Nl   86 (95)
T d1tjca_          83 NGNL   86 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3.5e-12  Score=94.09  Aligned_cols=76  Identities=20%  Similarity=0.083  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296           88 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus        88 n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ++..+...|..++ ..+++++|+.+|++||+++|+++.+|.++|.+++. .+++++|+.+|++||+++|+++.++.++
T Consensus         3 ~a~~l~~~Gn~~~-~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~~~a~~~l   78 (201)
T d2c2la1           3 SAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFL   78 (201)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence            4566778899887 89999999999999999999999999999999999 9999999999999999999999877543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.33  E-value=7.2e-12  Score=86.84  Aligned_cols=73  Identities=11%  Similarity=-0.064  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296           91 LLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus        91 ~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      .++++|..+. ..+++++|+.+|+++|+++|+++.++..+|.++.. .+++++|+.+|++||+++|+++.++.++
T Consensus        18 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~l   90 (112)
T d1hxia_          18 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAAL   90 (112)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHH-HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhcccccccccccccccchHHH
Confidence            3466788876 79999999999999999999999999999999999 9999999999999999999999887554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.7e-12  Score=86.86  Aligned_cols=74  Identities=12%  Similarity=0.098  Sum_probs=65.9

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLI  134 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P~n-------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l  134 (167)
                      |.++++++++++|+.+|++|+++.|.+       +.++.++|.++. ..+++++|+.+|++||+++|+++.++.+++.+.
T Consensus        12 G~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~   90 (95)
T d1tjca_          12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKYFE   90 (95)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            357788999999999999999997664       678999999997 899999999999999999999999999987765


Q ss_pred             HH
Q 046296          135 WQ  136 (167)
Q Consensus       135 ~~  136 (167)
                      ..
T Consensus        91 ~~   92 (95)
T d1tjca_          91 YI   92 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=9.7e-12  Score=92.05  Aligned_cols=79  Identities=13%  Similarity=-0.005  Sum_probs=72.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+.+++++|+.+++++|+++|+++.+++.+|.++. .++++++|+..|++|++++|+++.+...++.+... ..+..
T Consensus        70 ~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~-~~~~~  147 (170)
T d1p5qa1          70 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR-IRRQL  147 (170)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHH
Confidence            46889999999999999999999999999999999997 89999999999999999999999999999998776 55444


Q ss_pred             H
Q 046296          143 R  143 (167)
Q Consensus       143 e  143 (167)
                      +
T Consensus       148 ~  148 (170)
T d1p5qa1         148 A  148 (170)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=6.6e-12  Score=92.31  Aligned_cols=80  Identities=14%  Similarity=0.009  Sum_probs=72.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      .+|.+.+++++|+..|++||+++|+++.+|+++|.++. ..+++++|+..|++|++++|+++.++..+..+... .....
T Consensus        85 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~-l~~~~  162 (169)
T d1ihga1          85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK-IKAQK  162 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHH
Confidence            46788899999999999999999999999999999997 89999999999999999999999999999888766 55544


Q ss_pred             HH
Q 046296          143 RA  144 (167)
Q Consensus       143 eA  144 (167)
                      ++
T Consensus       163 ~~  164 (169)
T d1ihga1         163 DK  164 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.7e-11  Score=85.48  Aligned_cols=72  Identities=17%  Similarity=0.037  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296           92 LGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus        92 l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +...|..+. ..+++++|+.+|+++|+++|+++.++.++|.+++. ++++++|+..|+++++++|+++.++.++
T Consensus         6 l~~~g~~~~-~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~   77 (117)
T d1elwa_           6 LKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRK   77 (117)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cccccccchhhhhHHHhccchhhHHHHH
Confidence            455678776 79999999999999999999999999999999999 9999999999999999999999877543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.4e-11  Score=88.23  Aligned_cols=86  Identities=14%  Similarity=-0.060  Sum_probs=73.9

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HcCCH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ-AHKDA  141 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~-~~g~~  141 (167)
                      .+|+..+++++|+..|+++|+++|+++.+|.++|.++. ..+++++|+..|+++++++|+++.++..+..+... ....+
T Consensus        52 ~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~-~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  130 (159)
T d1a17a_          52 LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF  130 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999999999999999999999997 89999999999999999999999999888776432 14456


Q ss_pred             HHHHHHHH
Q 046296          142 SRAESYFD  149 (167)
Q Consensus       142 ~eA~~~~e  149 (167)
                      ++|+...+
T Consensus       131 ~~a~~~~~  138 (159)
T d1a17a_         131 ERAIAGDE  138 (159)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhCcH
Confidence            66665433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.26  E-value=1.8e-11  Score=90.15  Aligned_cols=90  Identities=11%  Similarity=0.017  Sum_probs=77.6

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDA-  141 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~-  141 (167)
                      .+|.+.+++++|+.+|+++|+++|+++.++++++.++. ..+++++|+..|++++.++|+++.++..++.+... ...+ 
T Consensus        72 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~-~~~~~  149 (168)
T d1kt1a1          72 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK-AKEHN  149 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHhHH
Confidence            46788999999999999999999999999999999987 89999999999999999999999999999988776 4444 


Q ss_pred             HHHHHHHHHHHHh
Q 046296          142 SRAESYFDQAVKS  154 (167)
Q Consensus       142 ~eA~~~~e~Al~l  154 (167)
                      +...+.|.+.++.
T Consensus       150 e~~kk~~~~~f~~  162 (168)
T d1kt1a1         150 ERDRRTYANMFKK  162 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            3455555555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.22  E-value=6.2e-11  Score=94.40  Aligned_cols=96  Identities=18%  Similarity=0.123  Sum_probs=85.4

Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------
Q 046296           65 SNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ--------  136 (167)
Q Consensus        65 y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~--------  136 (167)
                      .++++++++|+..|+++|+.+|+|+.++.+++.+|. ..|++++|++.|+++++++|++..++..++.++..        
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            456799999999999999999999999999999997 89999999999999999999999888877666433        


Q ss_pred             --------------------------HcCCHHHHHHHHHHHHHhCCCCHHH
Q 046296          137 --------------------------AHKDASRAESYFDQAVKSAPDDWLN  161 (167)
Q Consensus       137 --------------------------~~g~~~eA~~~~e~Al~l~P~~~~~  161 (167)
                                                ..+++++|++.+++++++.|+.+..
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence                                      2689999999999999999987643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.22  E-value=2e-11  Score=88.86  Aligned_cols=73  Identities=18%  Similarity=0.092  Sum_probs=68.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~  136 (167)
                      ..|++.+++++|+.+|+++|+++|+++.+|+++|.++. .++++++|+.+|+++++++|+++.+...+..+..+
T Consensus        75 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999997 89999999999999999999999999998877654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.5e-11  Score=87.00  Aligned_cols=69  Identities=13%  Similarity=0.157  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 046296           90 LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWL  160 (167)
Q Consensus        90 ~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~  160 (167)
                      ..+-+++..++ ..++|++|+.+|++||+++|+++.++.++|.+++. ++++++|++.|++||+++|+++.
T Consensus         5 ~~~k~~G~~~~-~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~~~   73 (128)
T d1elra_           5 LKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENRE   73 (128)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCcccHH
Confidence            34567888887 79999999999999999999999999999999999 99999999999999999998764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.5e-11  Score=104.98  Aligned_cols=99  Identities=15%  Similarity=0.027  Sum_probs=78.0

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ..|.+.++.++|+..++++++.+|.  .++.++|.++. .++++++|+.+|++|++++|+++.+++++|.++.. .+++.
T Consensus       128 ~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~~~~  203 (497)
T d1ya0a1         128 IISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHL  203 (497)
T ss_dssp             ---------------CCHHHHHHHH--HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cCCHH
Confidence            4566778899999999999988874  57788898886 79999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      +|+.+|.+||.++|..+.++.|+
T Consensus       204 ~A~~~y~ral~~~~~~~~a~~nL  226 (497)
T d1ya0a1         204 TTIFYYCRSIAVKFPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHHHHSSSBCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHH
Confidence            99999999999999999888775

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=9e-11  Score=93.53  Aligned_cols=99  Identities=11%  Similarity=0.061  Sum_probs=85.6

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHcCC
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPGDGNILS-LYADLIWQAHKD  140 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~g--d~e~A~~~~~rAl~l~P~~~~al~-~lA~~l~~~~g~  140 (167)
                      .+...+.+++|+.+|+++++.+|+++.+|+.++.++. ..+  ++++|+..++++++++|++..++. ..+.++.. .++
T Consensus        82 ~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~  159 (334)
T d1dcea1          82 PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AVA  159 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH-HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh-ccc
Confidence            3444566899999999999999999999999998875 444  589999999999999999999875 45566666 899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHh
Q 046296          141 ASRAESYFDQAVKSAPDDWLNLIK  164 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~~~l~~  164 (167)
                      +++|+++++++++++|++..++.+
T Consensus       160 ~~~Al~~~~~~i~~~p~~~~a~~~  183 (334)
T d1dcea1         160 PAEELAFTDSLITRNFSNYSSWHY  183 (334)
T ss_dssp             HHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCCHHHHHH
Confidence            999999999999999999988754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=3e-10  Score=85.26  Aligned_cols=92  Identities=9%  Similarity=-0.010  Sum_probs=81.6

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNA----------------------LLLGNYARFLKEVRGDFAKAEELCGRAILANP  121 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~----------------------~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P  121 (167)
                      .....+++++|+..|.+||++.|.++                      .++.+++.++. ..+++++|+.+++++|+++|
T Consensus        20 ~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g~~~~Al~~~~~al~~~P   98 (179)
T d2ff4a2          20 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHP   98 (179)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHhCC
Confidence            45667899999999999999988653                      45677888776 79999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCC
Q 046296          122 GDGNILSLYADLIWQAHKDASRAESYFDQA-------VKSAPD  157 (167)
Q Consensus       122 ~~~~al~~lA~~l~~~~g~~~eA~~~~e~A-------l~l~P~  157 (167)
                      .+..+|..++.++.. .|++.+|++.|+++       +-++|.
T Consensus        99 ~~e~~~~~l~~al~~-~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          99 YREPLWTQLITAYYL-SDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             TCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             ccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999 99999999999998       446775

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=1e-09  Score=87.17  Aligned_cols=93  Identities=12%  Similarity=0.055  Sum_probs=80.5

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKE---------VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHK  139 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~---------~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g  139 (167)
                      ...++|+.+++++|+++|+++.+|+....++..         ..+++++|+.+++++++.+|+++.++..++.++.. .+
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-~~  121 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LP  121 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CS
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-hc
Confidence            345899999999999999999999887776542         12348899999999999999999999999998877 65


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHH
Q 046296          140 --DASRAESYFDQAVKSAPDDWLNL  162 (167)
Q Consensus       140 --~~~eA~~~~e~Al~l~P~~~~~l  162 (167)
                        ++++|+..++++++++|.+..++
T Consensus       122 ~~~~~~a~~~~~~al~~~~~~~~~~  146 (334)
T d1dcea1         122 EPNWARELELCARFLEADERNFHCW  146 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccHHHHHHHHHHHHhhCchhhhhh
Confidence              48999999999999999987654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=6.1e-10  Score=88.30  Aligned_cols=92  Identities=12%  Similarity=0.015  Sum_probs=65.2

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAES  146 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~  146 (167)
                      +.+++++|...|+++++..|.++..+..++.+.....++.+.|..+|+++++.+|+++.++..++.++.. .+++++|+.
T Consensus       146 ~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g~~~~aR~  224 (308)
T d2onda1         146 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRV  224 (308)
T ss_dssp             HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cCChHHHHH
Confidence            3456677777777777777777777776665543234677777777777777777777777777777777 777777777


Q ss_pred             HHHHHHHhCCCCH
Q 046296          147 YFDQAVKSAPDDW  159 (167)
Q Consensus       147 ~~e~Al~l~P~~~  159 (167)
                      +|++|++..|.++
T Consensus       225 ~fe~ai~~~~~~~  237 (308)
T d2onda1         225 LFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHHHSSSSCG
T ss_pred             HHHHHHHhCCCCh
Confidence            7777777666543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=6.1e-10  Score=80.43  Aligned_cols=68  Identities=10%  Similarity=0.019  Sum_probs=59.0

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVR-----------GDFAKAEELCGRAILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~-----------gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~  136 (167)
                      ...+++|+..|++||+++|+++.+++++|.++. ..           ..+++|+++|++||+++|++..++..++.+...
T Consensus        54 ~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~-~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT-SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH-HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            356789999999999999999999999999886 33           347999999999999999999998888776543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=6.5e-10  Score=87.57  Aligned_cols=96  Identities=17%  Similarity=0.041  Sum_probs=75.5

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPG------DGNILSLY  130 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n------~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~------~~~al~~l  130 (167)
                      .+|.+.+++++|+.+|++++++.+.+      ..++.+++.++....+++++|+++|++|+++.+.      ...++.++
T Consensus        85 ~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~l  164 (290)
T d1qqea_          85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC  164 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Confidence            46778888999999999988887665      5667777776643358899999999999887442      24557788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 046296          131 ADLIWQAHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       131 A~~l~~~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                      |.++.. +++|++|+++|++++.+.|.++
T Consensus       165 a~~~~~-~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         165 ADLKAL-DGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHH-cChHHHHHHHHHHHHHhCccch
Confidence            889888 9999999999999999888764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.3e-09  Score=86.44  Aligned_cols=101  Identities=13%  Similarity=0.126  Sum_probs=76.7

Q ss_pred             hhhcCCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 046296           64 YSNNNHGSSSTDAYNEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDAS  142 (167)
Q Consensus        64 ~y~~~g~~d~A~~~~~kAL~l~P~n~-~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~  142 (167)
                      ++.+++++++|...|+++|+..|.++ .+|..++.++. ..++++.|+++|++|++..|.+...+..++.+.....++.+
T Consensus       108 ~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~  186 (308)
T d2onda1         108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHH
Confidence            44566778888888888888888764 46777777765 67788888888888888888888888877776554357788


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHhc
Q 046296          143 RAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       143 eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      .|..+|+++++..|+++.++..|
T Consensus       187 ~a~~i~e~~l~~~p~~~~~w~~y  209 (308)
T d2onda1         187 VAFKIFELGLKKYGDIPEYVLAY  209 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHH
Confidence            88888888888888887766554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=7.2e-09  Score=79.23  Aligned_cols=92  Identities=10%  Similarity=0.081  Sum_probs=79.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSLYA  131 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~-----~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~lA  131 (167)
                      .++..++++++|+.+|+++|++.|.++     .++..++.++. ..|++++|+.+|++++++.|..      ..++..++
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            467788999999999999999999873     57788898887 8999999999999999986543      45667788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          132 DLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       132 ~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      .++.. .+++.+|+..+.+++++.+
T Consensus        99 ~~~~~-~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          99 EILFA-QGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHhH
Confidence            88988 9999999999999998643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.2e-09  Score=74.80  Aligned_cols=67  Identities=9%  Similarity=-0.063  Sum_probs=59.1

Q ss_pred             CChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n--~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~  136 (167)
                      +++++|+.+|+++|+.+|++  +.+++++|.++. ..+++++|+++|+++|+++|++..++..+..+...
T Consensus        50 ~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~-~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          50 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            45678999999999999876  458999999887 89999999999999999999999999888766544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=2e-09  Score=84.63  Aligned_cols=94  Identities=11%  Similarity=-0.019  Sum_probs=79.1

Q ss_pred             cchhhcCCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 046296           62 NNYSNNNHGSSSTDAYNEKMIEANP------GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGD------GNILSL  129 (167)
Q Consensus        62 ~~~y~~~g~~d~A~~~~~kAL~l~P------~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~------~~al~~  129 (167)
                      +++|...+++++|+.+|++|+++.+      .-+.++.++|.++. ..+++++|+++|++++++.+..      ..++..
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            3578888999999999999999842      23567889999886 7999999999999999987755      677778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          130 YADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       130 lA~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      ++.++....+++++|+++|++|+++.+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            888876525999999999999998754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=1.8e-08  Score=71.84  Aligned_cols=89  Identities=11%  Similarity=-0.083  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHH
Q 046296           72 SSTDAYNEKMIEANPGNALLLGNYARFLKEVR---GDFAKAEELCGRAILANPGDG-NILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        72 d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~---gd~e~A~~~~~rAl~l~P~~~-~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      ..-..-|.+.+.-.| .+...++||.+|. ..   .+..+++.+++.+++.+|.+. +.++++|..+++ +++|++|+.+
T Consensus        19 ~~~~~q~~~e~~~~~-s~qt~F~YAw~Lv-~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~   95 (124)
T d2pqrb1          19 EILRQQVVSEGGPTA-TIQSRFNYAWGLI-KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRY   95 (124)
T ss_dssp             HHHHHHHHHTTGGGS-CHHHHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCC-CcchHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            333333444332233 3788999999886 44   356899999999999999775 899999999999 9999999999


Q ss_pred             HHHHHHhCCCCHHHHH
Q 046296          148 FDQAVKSAPDDWLNLI  163 (167)
Q Consensus       148 ~e~Al~l~P~~~~~l~  163 (167)
                      ++++|+++|+|..++.
T Consensus        96 ~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          96 VDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHCTTCHHHHH
T ss_pred             HHHHHccCCCcHHHHH
Confidence            9999999999987763

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.5e-08  Score=77.45  Aligned_cols=92  Identities=21%  Similarity=0.146  Sum_probs=79.4

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILA------NPGDGNILSLYAD  132 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n----~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l------~P~~~~al~~lA~  132 (167)
                      .++...+++++|..+++++++..|.+    ...+.+++.++. ..+++++|+.++++++..      .|..+.++..+|.
T Consensus       221 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  299 (366)
T d1hz4a_         221 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI-LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ  299 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHH
Confidence            45677789999999999999998875    455677888886 799999999999999854      4566788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC
Q 046296          133 LIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus       133 ~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      +++. +|++++|+++|++|+++.+
T Consensus       300 ~~~~-~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         300 LYWQ-AGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHHH
T ss_pred             HHHH-CCCHHHHHHHHHHHHHHhh
Confidence            9999 9999999999999999855

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.5e-08  Score=84.53  Aligned_cols=73  Identities=12%  Similarity=0.101  Sum_probs=68.3

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~  136 (167)
                      .++..++++++|+.+|++|++++|+++.+++++|.++. ..++..+|+.+|.|||.++|..+.++.+++.++..
T Consensus       160 ~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~-~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999886 79999999999999999999999999999987765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.62  E-value=4.5e-08  Score=77.42  Aligned_cols=63  Identities=29%  Similarity=0.350  Sum_probs=58.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 046296          102 VRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       102 ~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P~~~~~l~~y  165 (167)
                      ..|++++|++.|+++|+.+|+++.++.+++.+|.. .|++++|++.|+++++++|++..++..|
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~~~~~~~l   70 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQL   70 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            57999999999999999999999999999999999 9999999999999999999998765443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.44  E-value=2.5e-06  Score=59.58  Aligned_cols=83  Identities=16%  Similarity=0.111  Sum_probs=64.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPGDGNILSLYADLIWQ---AHKDA  141 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~----~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---~~g~~  141 (167)
                      .+.++|+.+|+++.+.  +++.+.++++.++. .    ..|+++|+++|++|.+.  .++.+.++|+.++..   +..++
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~  111 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYE-NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE  111 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhh-hccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCH
Confidence            5788888888888764  68888888887764 3    45788999999998764  678888888888775   23578


Q ss_pred             HHHHHHHHHHHHhCC
Q 046296          142 SRAESYFDQAVKSAP  156 (167)
Q Consensus       142 ~eA~~~~e~Al~l~P  156 (167)
                      ++|+.+|++|.++..
T Consensus       112 ~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         112 KQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCC
Confidence            899999999888754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=4.9e-07  Score=64.19  Aligned_cols=64  Identities=6%  Similarity=-0.041  Sum_probs=57.2

Q ss_pred             CChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADL  133 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~-~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~  133 (167)
                      .+..+++.+|+++++.+|.+. ++++++|..++ ..++|++|+.+++++|+++|+|..++...-.+
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            467899999999999999875 89999999987 89999999999999999999999987665444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.38  E-value=4.3e-07  Score=65.09  Aligned_cols=59  Identities=19%  Similarity=0.120  Sum_probs=51.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 046296           96 ARFLKEVRGDFAKAEELCGRAILANPGD------------GNILSLYADLIWQAHKDASRAESYFDQAVKSAP  156 (167)
Q Consensus        96 A~~l~~~~gd~e~A~~~~~rAl~l~P~~------------~~al~~lA~~l~~~~g~~~eA~~~~e~Al~l~P  156 (167)
                      +..++ ..++|++|+..|++||+++|+.            +.++.++|.++.. ++++++|+..++++|++.|
T Consensus        16 g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1          16 AQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhccc
Confidence            55555 6899999999999999999875            3678899999999 9999999999999998755

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=5.4e-06  Score=61.28  Aligned_cols=75  Identities=13%  Similarity=-0.035  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHH
Q 046296           89 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDG----------------------NILSLYADLIWQAHKDASRAES  146 (167)
Q Consensus        89 ~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~----------------------~al~~lA~~l~~~~g~~~eA~~  146 (167)
                      ...+.+.+..+. ..|++++|+.+|.+||.+.|.++                      .++..++.++.. +|++++|+.
T Consensus        11 f~~~~~~g~~~~-~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~-~g~~~~Al~   88 (179)
T d2ff4a2          11 FVAEKTAGVHAA-AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHH
Confidence            345666777776 79999999999999999977542                      567888999999 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHhc
Q 046296          147 YFDQAVKSAPDDWLNLIKL  165 (167)
Q Consensus       147 ~~e~Al~l~P~~~~~l~~y  165 (167)
                      +++++|+++|.+..++.++
T Consensus        89 ~~~~al~~~P~~e~~~~~l  107 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQL  107 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHH
Confidence            9999999999998877554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.20  E-value=1.6e-06  Score=60.66  Aligned_cols=81  Identities=17%  Similarity=0.110  Sum_probs=67.3

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQ---AHKDASRAE  145 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---~~g~~~eA~  145 (167)
                      .|+++|+.+|+++.+..  ++.+.++++..   ...++++|+.+|++|.+.  .++.+++.+|.++..   +..++++|+
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~~---~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVSN---SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHTC---TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhccc---cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            48999999999999874  66777777652   467899999999999864  789999999998875   235789999


Q ss_pred             HHHHHHHHhCC
Q 046296          146 SYFDQAVKSAP  156 (167)
Q Consensus       146 ~~~e~Al~l~P  156 (167)
                      .+|++|.+...
T Consensus        80 ~~~~~aa~~g~   90 (133)
T d1klxa_          80 QYYSKACGLND   90 (133)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHhhhhccCc
Confidence            99999998743

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.16  E-value=1.6e-05  Score=60.06  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=76.1

Q ss_pred             chhhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 046296           63 NYSNNNHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPGDGNILSLYADLIWQ--  136 (167)
Q Consensus        63 ~~y~~~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~----~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~--  136 (167)
                      ..++.++++++|+.+|++|.+.  +++.++++|+.++. .    ..++.+|..+++++..  +.++.+...++.++..  
T Consensus        10 ~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~-~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l~~~~~~~~   84 (265)
T d1ouva_          10 AKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACD--LNYSNGCHLLGNLYYSGQ   84 (265)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCcchhHHHHHHhhccccc--ccccchhhcccccccccc
Confidence            4567788999999999999775  68999999999876 4    5789999999999875  4588888888887764  


Q ss_pred             -HcCCHHHHHHHHHHHHHhCCCCH
Q 046296          137 -AHKDASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       137 -~~g~~~eA~~~~e~Al~l~P~~~  159 (167)
                       ...+.++|..+|++++...+...
T Consensus        85 ~~~~~~~~a~~~~~~a~~~g~~~a  108 (265)
T d1ouva_          85 GVSQNTNKALQYYSKACDLKYAEG  108 (265)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchhhHHHHHHHhhhhhhhhhhH
Confidence             13688999999999998876544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.03  E-value=1.4e-05  Score=60.51  Aligned_cols=87  Identities=11%  Similarity=0.045  Sum_probs=71.6

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCC
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPGDGNILSLYADLIWQ---AHKD  140 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~----~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~---~~g~  140 (167)
                      ..+...+..+++++.+  +.++.+++++|.++. .    ..++++|+.+|++|.+.  .++.++++||.++..   +..+
T Consensus       159 ~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~-~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n  233 (265)
T d1ouva_         159 PKDLKKALASYDKACD--LKDSPGCFNAGNMYH-HGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRN  233 (265)
T ss_dssp             CCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCC
T ss_pred             ccccccchhhhhcccc--ccccccccchhhhcc-cCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccC
Confidence            3567888888888875  578999999998875 4    46899999999999887  578999999998874   1348


Q ss_pred             HHHHHHHHHHHHHhCCCCH
Q 046296          141 ASRAESYFDQAVKSAPDDW  159 (167)
Q Consensus       141 ~~eA~~~~e~Al~l~P~~~  159 (167)
                      +++|+.+|++|..+.+...
T Consensus       234 ~~~A~~~~~kAa~~g~~~A  252 (265)
T d1ouva_         234 EKQAIENFKKGCKLGAKGA  252 (265)
T ss_dssp             STTHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHCcCHHH
Confidence            9999999999999876544

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.53  E-value=0.27  Score=36.88  Aligned_cols=47  Identities=21%  Similarity=0.244  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           72 SSTDAYNEKMIE-----ANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        72 d~A~~~~~kAL~-----l~P~n~~~l---~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      ++|...|++|++     +.|.||.-+   .|++.|+++..++.++|.++.++|+.
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356666666553     355565433   35666666666666666666666553

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=91.21  E-value=0.15  Score=38.33  Aligned_cols=48  Identities=21%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHHHh-------CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIEA-------NPGNALL---LGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        71 ~d~A~~~~~kAL~l-------~P~n~~~---l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      .++|...|++|+++       .|.||.-   ..|++.|+++..++.++|.++.++|+.
T Consensus       123 ~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd  180 (223)
T d3efza1         123 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ  180 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35677777777654       2677643   356777777777888888877777663

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=90.02  E-value=0.45  Score=35.76  Aligned_cols=48  Identities=21%  Similarity=0.197  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           71 SSSTDAYNEKMIE-----ANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        71 ~d~A~~~~~kAL~-----l~P~n~~~l---~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      .++|...|++|++     +.|.+|..+   .|++.|+++..++.++|.++.++|+.
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456666666653     356666433   46666666666777777766666653

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=88.37  E-value=0.69  Score=34.41  Aligned_cols=48  Identities=4%  Similarity=0.017  Sum_probs=23.2

Q ss_pred             CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 046296          104 GDFAKAEELCGRAILA--------NPGDGNILSLYADLIWQAHKDASRAESYFDQA  151 (167)
Q Consensus       104 gd~e~A~~~~~rAl~l--------~P~~~~al~~lA~~l~~~~g~~~eA~~~~e~A  151 (167)
                      +..++|...|++|+.+        +|-..-...|++.++++.+++.++|.++.++|
T Consensus       137 ~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A  192 (220)
T d2o8pa1         137 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSL  192 (220)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3344455555554432        22333444556666665556666555544333

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.12  E-value=0.26  Score=31.75  Aligned_cols=36  Identities=14%  Similarity=0.152  Sum_probs=29.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA  119 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l  119 (167)
                      ..++.+|+.+.++|++.                +..++|++|+.+|.+||++
T Consensus         9 ~~~~~~A~~l~~~Av~~----------------D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVEL----------------DAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             CCHHHHHHHHHHHHHHH----------------HHTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHH----------------HHcCCHHHHHHHHHHHHHH
Confidence            35788899888888763                3799999999999998763

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=87.17  E-value=1.3  Score=35.10  Aligned_cols=83  Identities=14%  Similarity=0.150  Sum_probs=59.2

Q ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESY  147 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~  147 (167)
                      .+..+.|...+........+.......++..+  ..++...+...+..........+...+-+|..+.. .|+.++|..+
T Consensus       265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al--~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~-~G~~~~A~~~  341 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL--GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-RGREAEAKEI  341 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cCchHHHHHHHHhhcccccchHHHHHHHHHHH--HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHH-cCChhhHHHH
Confidence            45567777777777665555444444444333  46889888888876543333557888899999998 9999999999


Q ss_pred             HHHHHH
Q 046296          148 FDQAVK  153 (167)
Q Consensus       148 ~e~Al~  153 (167)
                      |.++..
T Consensus       342 ~~~~a~  347 (450)
T d1qsaa1         342 LHQLMQ  347 (450)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999875

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.19  E-value=1.1  Score=33.43  Aligned_cols=48  Identities=13%  Similarity=0.128  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHH-----hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          106 FAKAEELCGRAIL-----ANPGDGNIL---SLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       106 ~e~A~~~~~rAl~-----l~P~~~~al---~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      .++|...|++|++     +.|.+|..+   .+++.++++..++.++|.+..++|+.
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4578889998875     468888655   46888999988999999988888875

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.77  E-value=1  Score=28.68  Aligned_cols=16  Identities=6%  Similarity=-0.016  Sum_probs=7.8

Q ss_pred             CCChHHHHHHHHHHHH
Q 046296           68 NHGSSSTDAYNEKMIE   83 (167)
Q Consensus        68 ~g~~d~A~~~~~kAL~   83 (167)
                      .+++++|+.+|.++|+
T Consensus        28 ~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          28 ESRYQQALVCYQEGID   43 (93)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            3455555555554443

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=84.48  E-value=0.79  Score=34.20  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHh-------CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296          106 FAKAEELCGRAILA-------NPGDGNI---LSLYADLIWQAHKDASRAESYFDQAVK  153 (167)
Q Consensus       106 ~e~A~~~~~rAl~l-------~P~~~~a---l~~lA~~l~~~~g~~~eA~~~~e~Al~  153 (167)
                      .++|...|++|+++       .|.+|..   ..+++.++++.+++.++|.++.++|+.
T Consensus       123 ~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd  180 (223)
T d3efza1         123 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ  180 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            36688889988754       2778744   457888888878999999988887774

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=84.03  E-value=2.1  Score=31.62  Aligned_cols=52  Identities=10%  Similarity=0.022  Sum_probs=42.5

Q ss_pred             cCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 046296           67 NNHGSSSTDAYNEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAIL  118 (167)
Q Consensus        67 ~~g~~d~A~~~~~kAL~l-----~P~n~---~~l~~lA~~l~~~~gd~e~A~~~~~rAl~  118 (167)
                      +.+..++|...|++|+++     .|.+|   -...|++.|+++..++.++|.++.++|++
T Consensus       135 ~~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~  194 (220)
T d2o8pa1         135 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK  194 (220)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456778999999999875     34554   56678999999999999999999998864

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=82.88  E-value=5.3  Score=27.56  Aligned_cols=81  Identities=20%  Similarity=0.157  Sum_probs=57.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 046296           69 HGSSSTDAYNEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPGDGNILSLYADLIWQAHKDASRAESYF  148 (167)
Q Consensus        69 g~~d~A~~~~~kAL~l~P~n~~~l~~lA~~l~~~~gd~e~A~~~~~rAl~l~P~~~~al~~lA~~l~~~~g~~~eA~~~~  148 (167)
                      +++..-+.+|-+   .+-.+..+-..|- ++- .+++-++-.+.++..++-+.-+|+++..+|.+|-+ .|...+|-+++
T Consensus        70 ~Nlk~vv~C~~~---~n~~se~vdlALd-~lv-~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kk-ig~~re~nell  143 (161)
T d1wy6a1          70 QNLKSVVECGVI---NNTLNEHVNKALD-ILV-IQGKRDKLEEIGREILKNNEVSASILVAIANALRR-VGDERDATTLL  143 (161)
T ss_dssp             SCTHHHHHHHHH---TTCCCHHHHHHHH-HHH-HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             hcHHHHHHHHHH---hcchHHHHHHHHH-HHH-HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcchhhHHHHH
Confidence            345555555543   2333333333332 333 68888888899999899888899999999999999 99999999999


Q ss_pred             HHHHHhC
Q 046296          149 DQAVKSA  155 (167)
Q Consensus       149 e~Al~l~  155 (167)
                      .+|.+..
T Consensus       144 ~~ACe~G  150 (161)
T d1wy6a1         144 IEACKKG  150 (161)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998754

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.48  E-value=0.47  Score=29.31  Aligned_cols=18  Identities=22%  Similarity=0.442  Sum_probs=13.7

Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 046296          101 EVRGDFAKAEELCGRAIL  118 (167)
Q Consensus       101 ~~~gd~e~A~~~~~rAl~  118 (167)
                      ...+++++|+.+|..|++
T Consensus        22 D~~~~y~~A~~~Y~~a~~   39 (77)
T d1wr0a1          22 DKAGNYEEALQLYQHAVQ   39 (77)
T ss_dssp             HHTTCCSSHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            367888888888877765