Citrus Sinensis ID: 046301

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
Protein Sequence
HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNSTTSSDSG
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccHHHHHHcccccccccHHHHHccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccEEEcccccEEEcccHHHHHHHHHHcccEEEEccccccccccccccEEEEEEEEcccccccccccccccccccEEEEccccccccccccHHHHHHHHcccccccEEEccccccccccccccccccccEEccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccHHHHccccccccEEEEccccccccHHHHHHHccccccccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHcHHccccccccccHHHHHEEHHccccHHHHHHHEHEcccccccccHHHHHHHHHHHcHcccccccccHHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHHcccEEEEEcccccccccccccccEEEEEEEcccccHccccHHHHcHccccEEEEccccccccccccHHHHHHHHHHHcEEEEEEccccccccccccHccHHHHHEEEcccccccccccccccccHcccEEcEEEEccccccHHccccccccHHHHHcccEEEEcccccccHHHHHHHHHcccEEEEccccccccHHHHHHHcccccccccEEEEEEcccccccccc
Coil and Loop (DISEMBL)
hslrnllrddclcifvqhslgrtdFVAHQYLSEIGEKIvdrcngsplAAKTLGSLlrdkydpkdweDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYcsflpkgyrfdeRQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSrsffqwskidasrFLMHDLIHDLACWafgeisssmestwdgnnerrfsRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTrktfyvtnnlvfhvvprLRQLRVVSLCGYKIVQLPNDIAELKhlryldfshtaievlpesklfpdvgnlvnlrHLKDSHSNLLeemplrigklTSLRTLAKFVVgkgncyglKELRSLMHLQEKLTIsglenvndaeDAKEAQLNGKEKLEALSLKWvnsttssdsg
Flexible Loop (DISEMBL)
HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEkivdrcngSPLAAKTLGsllrdkydpkDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKeklealslkwvnsttssdsg
Low Complexity Region (SEG)
HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNSTTSSDSG
Disordered region (IsUnstruct)
*****LLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSS***TWD****RRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGL*************************************
Disordered Region (DISOPRED)
HSLRNLLRDDCLCIFVQHSLGRTD*VAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSSMESTWD**NERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW**********
Disordered Region (DISEMBL)
HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV*********
Disordered Region (DISPRO)
**LRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENxxxxxxxxxxxxxxxxxxxxxSLKWVNSTTSSDSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	404	2.2.26 [Sep-21-2011]
Q9LRR4	1054	Putative disease resistan	yes	no	0.980	0.375	0.404	7e-78
Q9LRR5	1424	Putative disease resistan	no	no	0.955	0.271	0.358	5e-58
Q7XBQ9	970	Disease resistance protei	N/A	no	0.928	0.386	0.365	2e-54
Q7XA42	979	Putative disease resistan	N/A	no	0.910	0.375	0.350	3e-51
Q7XA39	988	Putative disease resistan	N/A	no	0.881	0.360	0.355	2e-50
Q7XA40	992	Putative disease resistan	N/A	no	0.928	0.378	0.346	3e-50
Q39214	926	Disease resistance protei	no	no	0.797	0.347	0.271	1e-24
O82484	892	Putative disease resistan	no	no	0.757	0.343	0.261	9e-21
Q8W474	907	Probable disease resistan	no	no	0.650	0.289	0.272	1e-19
O81825	919	Probable disease resistan	no	no	0.811	0.356	0.254	2e-19

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  291 bits (744), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 172/425 (40%), Positives = 246/425 (57%), Gaps = 29/425 (6%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           H+L+ L   DC  +F++   G  +   ++ + ++ E+IV +C G PLA KTLG +LR + 
Sbjct: 329 HNLQPLSDGDCWSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEG 388

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
              +WE VL+S+IWDL  D+S+++  LRVSY+YLP+++KRCFAYCS  PKG+ F++ ++V
Sbjct: 389 KVIEWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVV 448

Query: 121 LLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFG 180
           LLWMAEG LQ     K +EELG + F  L SRS  Q +K   +R++MHD I++LA +A G
Sbjct: 449 LLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK---TRYIMHDFINELAQFASG 505

Query: 181 EISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKT 240
           E SS  E   DG  + + S   R+LSYL   +     FE L +V++LRTFL L L     
Sbjct: 506 EFSSKFE---DG-CKLQVSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSR 561

Query: 241 FYVTNNLVFH-VVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPES- 297
               + +V   ++P L +LRV+SL  YKI +LP D    + H R+LD S T +E LP+S 
Sbjct: 562 SCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSL 621

Query: 298 ------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 339
                             +L  D+ NL+NLR+L D     L +MP R G+L SL+TL  F
Sbjct: 622 CYMYNLQTLLLSYCSSLKELPTDISNLINLRYL-DLIGTKLRQMPRRFGRLKSLQTLTTF 680

Query: 340 VVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNSTT 399
            V   +   + EL  L  L  KL I  L+ V D  DA EA LN K+ L  +   W   ++
Sbjct: 681 FVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSS 740

Query: 400 SSDSG 404
           SS++ 
Sbjct: 741 SSENN 745

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  225 bits (573), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 220/416 (52%), Gaps = 30/416 (7%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVA-HQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDK 59
           + ++ +  ++C  +  + + G     + +Q L  IG++I ++C G PLAA+ + S LR K
Sbjct: 324 YQMKLMTNEECWELISRFAFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSK 383

Query: 60  YDPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQI 119
            +P DW  V  SK  + +   +SI+  L++SY  LP  +KRCFA CS  PKG+ FD  ++
Sbjct: 384 PNPDDWYAV--SK--NFSSYTNSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREEL 439

Query: 120 VLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAF 179
           VLLWMA  LL      +++E++G      L ++SFFQ   I  + F+MHDL++DLA    
Sbjct: 440 VLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVS 499

Query: 180 GEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTR- 238
           G+    +E     +N        RH S+  SQ D    F  +   E+LRT L     T  
Sbjct: 500 GDFCFRLED----DNIPEIPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSL 555

Query: 239 KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPE-- 296
           ++  +T  ++  ++  L  LR++SL  Y+I  LP  +  LK LRYLD S T I+ LPE  
Sbjct: 556 ESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFV 615

Query: 297 -----------------SKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 339
                            + L   +  L+NLR L D     L EMP  I KL SL+ L+ F
Sbjct: 616 CTLCNLQTLLLSNCRDLTSLPKSIAELINLRLL-DLVGTPLVEMPPGIKKLRSLQKLSNF 674

Query: 340 VVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV 395
           V+G+ +  GL EL+ L HL+  L IS L+NV  A +AK+A L  K  L+ L LKW 
Sbjct: 675 VIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWT 730

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/399 (36%), Positives = 224/399 (56%), Gaps = 24/399 (6%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           + L NL ++DC  +F+Q + G  + + +  L  IG++IV +  G PLAAKTLG +L  K 
Sbjct: 307 YELSNLSQEDCWLLFMQRAFGHQEEI-NPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKR 365

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
           + + WE V  S IW+L +D SSI+ ALR+SYH LP  +K+CFAYC+  PK  + ++ +++
Sbjct: 366 EERAWEHVRDSPIWNLPQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLI 425

Query: 121 LLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASR--FLMHDLIHDLACWA 178
            LWMA G L  +    ++E++G + ++ L+ RSFFQ  ++   +  F MHDLIHDLA   
Sbjct: 426 SLWMAHGFLLSKG-NMELEDVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLATSL 484

Query: 179 FGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTR 238
           F   +SS       +N R  +++  +   ++  F  +  F  L  +E   +   L LG  
Sbjct: 485 FSANTSS-------SNIREINKH-SYTHMMSIGFAEVVFFYTLPPLEKFISLRVLNLGDS 536

Query: 239 KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSH-TAIEVLPES 297
                T N +   +  L  LR ++L G  +  LP  + +L++L+ LD  + T +  LP+ 
Sbjct: 537 -----TFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPK- 590

Query: 298 KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMH 357
               +   L +LR+L    S  L  MP RIG LT L+TL +FVVG+   Y L EL +L +
Sbjct: 591 ----ETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNL-N 645

Query: 358 LQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396
           L   + IS LE V + +DAKEA L+ K  L +LS+ W N
Sbjct: 646 LYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNN 684

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  202 bits (514), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 222/402 (55%), Gaps = 34/402 (8%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           + L NL  +DC  +F+Q + G  + +    ++ IG++IV +C G PLAAKTLG +LR K 
Sbjct: 306 YELSNLSPEDCWFLFMQRAFGHQEEINPNLMA-IGKEIVKKCGGVPLAAKTLGGILRFKR 364

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
           + ++WE V  S IW+L +D SSI+ ALR+SYH+LP  +++CF YC+  PK  +  +  ++
Sbjct: 365 EEREWEHVRDSPIWNLPQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLI 424

Query: 121 LLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASR--FLMHDLIHDLACWA 178
             WMA G L  +    ++E++G + +  L+ RSFFQ  ++++ +  F MHDLIHDLA   
Sbjct: 425 AFWMAHGFLLSKG-NLELEDVGNEVWNELYLRSFFQEIEVESGKTYFKMHDLIHDLATSL 483

Query: 179 FGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKV--EYLRTFLALLLG 236
           F   +S              S N+R ++   + +DG     G  +V   Y  + L   + 
Sbjct: 484 FSANTS--------------SSNIREIN---ANYDGYMMSIGFAEVVSSYSPSLLQKFVS 526

Query: 237 TRKTFYVTNNL--VFHVVPRLRQLRVVSLCG-YKIVQLPNDIAELKHLRYLDFSHT-AIE 292
            R      +NL  +   +  L  LR + L G ++I  LP  + +L++L+ LD  +  ++ 
Sbjct: 527 LRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLS 586

Query: 293 VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKEL 352
            LP  K    +G+L NL  L D  S  L   P RIG LT L++L+ FV+GK   + L EL
Sbjct: 587 CLP--KQTSKLGSLRNL--LLDGCS--LTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGEL 640

Query: 353 RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
           ++L +L   ++I+ L+ V    DAKEA L+ K  L +L L W
Sbjct: 641 KNL-NLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSW 681

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 212/416 (50%), Gaps = 60/416 (14%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           + L NL   D L +F+Q + G+    A+  L  IG++IV +C G PLAAKTLG LLR K 
Sbjct: 308 YHLSNLSPHDSLLLFMQRAFGQQK-EANPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKR 366

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
           +  +WE V  ++IW L +D SSI+ ALR+SYH+LP  +++CFAYC+  PK  +  +  ++
Sbjct: 367 EESEWEHVRDNEIWSLPQDESSILPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLI 426

Query: 121 LLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQ--WSKIDASRFLMHDLIHDLACWA 178
            LWMA G L  +    ++E++G + +  L+ RSFFQ   +K   + F +HDLIHDLA   
Sbjct: 427 TLWMAHGFLLSKG-NLELEDVGNEVWNELYLRSFFQEIEAKSGNTYFKIHDLIHDLATSL 485

Query: 179 FGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTR 238
           F   +S       GN      ++ +H   +     G       +    L+ F++      
Sbjct: 486 FSASASC------GNIREINVKDYKHTVSI-----GFAAVVSSYSPSLLKKFVS------ 528

Query: 239 KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPE-- 296
                              LRV++L   K+ QLP+ I +L HLRYLD S      LPE  
Sbjct: 529 -------------------LRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERL 569

Query: 297 SKL----FPDVGNLVNLRHLKDSHSNL------------LEEMPLRIGKLTSLRTLAKFV 340
            KL      DV N  +L  L    S L            L   P RIG LT L+TL  F+
Sbjct: 570 CKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGCPLTSTPPRIGLLTCLKTLGFFI 629

Query: 341 VGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396
           VG    Y L EL++L +L   ++I+ LE V +  DA EA L+ K  L++LS+ W N
Sbjct: 630 VGSKKGYQLGELKNL-NLCGSISITHLERVKNDTDA-EANLSAKANLQSLSMSWDN 683

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/404 (34%), Positives = 226/404 (55%), Gaps = 29/404 (7%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           + L NL ++DC  +F Q +       + + L EIG++IV +C G PLAAKTLG LLR K 
Sbjct: 306 YQLSNLSQEDCWLLFKQRAFCHQTETSPK-LMEIGKEIVKKCGGVPLAAKTLGGLLRFKR 364

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
           +  +WE V  S+IW+L +D +S++ ALR+SYH+LP  +++CFAYC+  PK  + ++  ++
Sbjct: 365 EESEWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLI 424

Query: 121 LLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASR--FLMHDLIHDLACWA 178
            LWMA   L  +    ++E++G + +  L+ RSFFQ  ++ + +  F MHDLIHDLA   
Sbjct: 425 ALWMAHSFLLSKG-NMELEDVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDLA--- 480

Query: 179 FGEISSSMESTWDGNNERRFS-RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGT 237
               +S   ++    + R+ + ++   + ++ + +   K    +   E + ++   L   
Sbjct: 481 ----TSMFSASASSRSIRQINVKDDEDMMFIVTNY---KDMMSIGFSEVVSSYSPSLFKR 533

Query: 238 RKTFYVTN--NLVFHVVPR----LRQLRVVSLCGYKIVQLPNDIAELKHLRYLD-FSHTA 290
             +  V N  N  F  +P     L  LR + L G KI  LP  + +L++L+ LD ++  +
Sbjct: 534 FVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQS 593

Query: 291 IEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLK 350
           +  LP+         L +LR+L   H   L  MP RIG LT L+TL  FVVG+   Y L 
Sbjct: 594 LSCLPKQ-----TSKLCSLRNLVLDHCP-LTSMPPRIGLLTCLKTLGYFVVGERKGYQLG 647

Query: 351 ELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
           ELR+L +L+  ++I+ LE V +  +AKEA L+ K  L +LS+ W
Sbjct: 648 ELRNL-NLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSW 690

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 164/357 (45%), Gaps = 35/357 (9%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRT-DFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDK 59
           H +  L  D+   +F   +   + +    Q L  I  K+V+RC G PLA  +LGS++  K
Sbjct: 331 HEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTK 390

Query: 60  YDPKDWEDVLTSKIWDLAEDRS--SIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDER 117
               +W+ V ++  W+L  +     +   + +S++ LP  +KRCF YCS  P  YR   +
Sbjct: 391 KFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRK 450

Query: 118 QIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQ---WSKIDASR-FLMHDLIHD 173
           +++ +WMA+  ++    G + EE+       L  R+  Q   W+     + F MHD+I +
Sbjct: 451 RLIRMWMAQRFVE-PIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWE 509

Query: 174 LACWA-----FGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLR 228
           +A        F ++ +  +S  D   E   +   RHL           R   LH      
Sbjct: 510 IALSVSKLERFCDVYND-DSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLH------ 562

Query: 229 TFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSH 288
              +LL+ +     +       ++P L  LR + L    I +LP+ +  + +L+YL+ S 
Sbjct: 563 ---SLLVCSSAKHKM------ELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSK 613

Query: 289 TAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGN 345
           T ++ LP+     +   LVNL  L   HS  +EE+PL + KL  LR L  F   +G+
Sbjct: 614 TQVKELPK-----NFHKLVNLETLNTKHSK-IEELPLGMWKLKKLRYLITFRRNEGH 664

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  101 bits (252), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 147/333 (44%), Gaps = 27/333 (8%)

Query: 17  QHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWE---DVLTSKI 73
           Q  +G+    +H  + E+ +K+  +C G PLA   +G  +  K   ++W    DVLTS  
Sbjct: 320 QEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGETMAGKRAVQEWHHAVDVLTSYA 379

Query: 74  WDLAEDRSSIMGALRVSYHYL-PSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHE 132
            + +     I+  L+ SY  L   +V+ CF YC+  P+ Y   + +++  W+ EG +   
Sbjct: 380 AEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPEDYSIKKYRLIDYWICEGFIDGN 439

Query: 133 TYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSSMES--TW 190
              ++    G +    L           +     MHD++ ++A W   ++  + E     
Sbjct: 440 IGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMALWTLSDLGKNKERCIVQ 499

Query: 191 DGNNERRFSR-----NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTN 245
            G+  R+  +      +R LS +    +GI+   G  +   L T    L   +   +++ 
Sbjct: 500 AGSGLRKVPKVEDWGAVRRLSLMN---NGIEEISGSPECPELTTLF--LQENKSLVHISG 554

Query: 246 NLVFHVVPRLRQLRVVSLC-GYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVG 304
               H    +R+L V+ L   +++  LP  I+EL  LRYLD SHT IE LP       + 
Sbjct: 555 EFFRH----MRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPAC-----LQ 605

Query: 305 NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA 337
           +L  L HL       L  +   I KL+SLRTL 
Sbjct: 606 DLKTLIHLNLECMRRLGSIA-GISKLSSLRTLG 637

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 142/308 (46%), Gaps = 45/308 (14%)

Query: 31  LSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWE----DVLTSKIWDLAEDRSSIMGA 86
           + ++G++++  C G PLA K LG LL  KY   DWE    ++ +  +   + + SSI   
Sbjct: 349 MEDMGKQMLKHCGGLPLAIKVLGGLLAAKYTMHDWERLSVNIGSDIVGRTSSNNSSIYHV 408

Query: 87  LRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETY--GKQMEELGRK 144
           L +S+  LPSY+K CF Y +  P+ ++ +  ++   W AEG+   E Y  G+ ++++G+ 
Sbjct: 409 LSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQS 468

Query: 145 SFQVLHSRSFFQWSK-IDASRF---LMHDLIHD-------------LACWAFGEISSSME 187
             + L  R+   W +   ASRF    +HD++ +             +A  + G  SSS  
Sbjct: 469 YLEELVRRNMIIWERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTG 528

Query: 188 STWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTN-N 246
           ++      RR         ++    +  K          LR+ + L        +V N  
Sbjct: 529 NSQSPCRSRRLVYQCPTTLHVERDINNPK----------LRSLVVLW----HDLWVENWK 574

Query: 247 LVFHVVPRLRQLRVVSL--CGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVG 304
           L+     RL+ LRV+ L    ++ ++LP  I  L HLRYL      +  LP S     +G
Sbjct: 575 LLGTSFTRLKLLRVLDLFYVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSS-----LG 629

Query: 305 NLVNLRHL 312
           NL+ L +L
Sbjct: 630 NLMLLIYL 637

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 161/362 (44%), Gaps = 34/362 (9%)

Query: 34  IGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLT--SKIWDLAEDRSSIMGALRVSY 91
           I + +   C G PLA  T+G  LR K   + W+  L    +     +    I G L++SY
Sbjct: 297 IAKDVSHECCGLPLAIITIGRTLRGKPQVEVWKHTLNLLKRSAPSIDTEEKIFGTLKLSY 356

Query: 92  HYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHS 151
            +L   +K CF +C+  P+ Y     ++++ W+AEGLL  + + + M   G    + L  
Sbjct: 357 DFLQDNMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKD 416

Query: 152 RSFFQ-WSKIDASRFLMHDLIHDLACW---AFGEISSSMESTWDGNNE---RRFSRNLRH 204
               +     D  +  MHD++ D A W   + GE   S+     G  E    +F  +++ 
Sbjct: 417 SCLLEDGDSCDTVK--MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQR 474

Query: 205 LSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLC 264
           +S + ++ + +      + +E + T + LL G      V N       P    LR++ L 
Sbjct: 475 VSLMANKLERLPN----NVIEGVETLVLLLQGNSHVKEVPNGF-LQAFP---NLRILDLS 526

Query: 265 GYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP 324
           G +I  LP+  + L  LR L   +       + +  P + +LV L+ L D H + + E+P
Sbjct: 527 GVRIRTLPDSFSNLHSLRSLVLRNCK-----KLRNLPSLESLVKLQFL-DLHESAIRELP 580

Query: 325 LRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGK 384
             +  L+SLR +        N Y L+ + +   LQ    +S LE ++ A  A    + G+
Sbjct: 581 RGLEALSSLRYIC-----VSNTYQLQSIPAGTILQ----LSSLEVLDMAGSAYSWGIKGE 631

Query: 385 EK 386
           E+
Sbjct: 632 ER 633

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
296090374	908	unnamed protein product [Vitis vinifera]	0.975	0.433	0.475	1e-100
225449649	1418	PREDICTED: putative disease resistance p	0.975	0.277	0.475	1e-100
147819724	1481	hypothetical protein VITISV_007111 [Viti	0.972	0.265	0.453	3e-97
225450019	1394	PREDICTED: putative disease resistance p	0.972	0.281	0.453	3e-97
297736321	967	unnamed protein product [Vitis vinifera]	0.972	0.406	0.453	6e-97
225450001	1389	PREDICTED: putative disease resistance p	0.975	0.283	0.471	2e-96
359497792	843	PREDICTED: putative disease resistance R	0.987	0.473	0.447	1e-95
147862409	1466	hypothetical protein VITISV_042289 [Viti	0.980	0.270	0.435	2e-95
225450003	1452	PREDICTED: putative disease resistance R	0.972	0.270	0.465	5e-95
359487172	1310	PREDICTED: putative disease resistance R	0.975	0.300	0.431	1e-94

>gi|296090374|emb|CBI40193.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/416 (47%), Positives = 272/416 (65%), Gaps = 22/416 (5%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           H ++ L  DDC  +FVQH+    +  AH  L  IG+KIV +C G PLAAKTLG LLR K 
Sbjct: 8   HYVKALSYDDCWSVFVQHAFENRNICAHPSLEVIGKKIVQKCGGLPLAAKTLGGLLRSKS 67

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
              +WEDVL SKIW+  +  S I+ ALR+SYHYLPS++KRCFAYCS  PK Y FD++++V
Sbjct: 68  KDDEWEDVLYSKIWNFPDKESDILPALRLSYHYLPSHLKRCFAYCSIFPKDYEFDKKELV 127

Query: 121 LLWMAEGLLQHETYG-KQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAF 179
           LLWMAEGL+Q    G KQME++G   F  L SRSFFQ S  + SRF+MHDLI+DLA +  
Sbjct: 128 LLWMAEGLIQQSPKGKKQMEDMGSDYFCELLSRSFFQLSSCNGSRFVMHDLINDLAQYVS 187

Query: 180 GEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTR- 238
            EI   +E + D N +  FS ++RH S+   +++  ++FE  +K + LRTFLAL +  + 
Sbjct: 188 EEICFHLEDSLDSNQKHTFSGSVRHSSFARCKYEVFRKFEDFYKAKNLRTFLALPIHMQY 247

Query: 239 -KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES 297
              F++T+ +   ++P+LR LRV+SL  Y+I +LPN I +LKHLRYL+ S T I+ LP+S
Sbjct: 248 YDFFHLTDKVSHDLLPKLRYLRVLSLSHYEIRELPNSIGDLKHLRYLNLSCTIIQELPDS 307

Query: 298 -------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK 338
                              +L     NL+NLRHL  +H++ LE MP ++GKL SL+TL+K
Sbjct: 308 LSDLHNLQTLVLFRCRRLNRLPRGFKNLINLRHLDIAHTHQLEVMPPQMGKLKSLQTLSK 367

Query: 339 FVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
           F+VGK    G+KEL  L+HL+ KL+I  L+NV D +DA++A L  K  LE L ++W
Sbjct: 368 FIVGKSKELGIKELGDLLHLRGKLSILDLQNVVDIQDARDANLKDKHHLEELLMEW 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/416 (47%), Positives = 272/416 (65%), Gaps = 22/416 (5%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           H ++ L  DDC  +FVQH+    +  AH  L  IG+KIV +C G PLAAKTLG LLR K 
Sbjct: 332 HYVKALSYDDCWSVFVQHAFENRNICAHPSLEVIGKKIVQKCGGLPLAAKTLGGLLRSKS 391

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
              +WEDVL SKIW+  +  S I+ ALR+SYHYLPS++KRCFAYCS  PK Y FD++++V
Sbjct: 392 KDDEWEDVLYSKIWNFPDKESDILPALRLSYHYLPSHLKRCFAYCSIFPKDYEFDKKELV 451

Query: 121 LLWMAEGLLQHETYG-KQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAF 179
           LLWMAEGL+Q    G KQME++G   F  L SRSFFQ S  + SRF+MHDLI+DLA +  
Sbjct: 452 LLWMAEGLIQQSPKGKKQMEDMGSDYFCELLSRSFFQLSSCNGSRFVMHDLINDLAQYVS 511

Query: 180 GEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTR- 238
            EI   +E + D N +  FS ++RH S+   +++  ++FE  +K + LRTFLAL +  + 
Sbjct: 512 EEICFHLEDSLDSNQKHTFSGSVRHSSFARCKYEVFRKFEDFYKAKNLRTFLALPIHMQY 571

Query: 239 -KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES 297
              F++T+ +   ++P+LR LRV+SL  Y+I +LPN I +LKHLRYL+ S T I+ LP+S
Sbjct: 572 YDFFHLTDKVSHDLLPKLRYLRVLSLSHYEIRELPNSIGDLKHLRYLNLSCTIIQELPDS 631

Query: 298 -------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK 338
                              +L     NL+NLRHL  +H++ LE MP ++GKL SL+TL+K
Sbjct: 632 LSDLHNLQTLVLFRCRRLNRLPRGFKNLINLRHLDIAHTHQLEVMPPQMGKLKSLQTLSK 691

Query: 339 FVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
           F+VGK    G+KEL  L+HL+ KL+I  L+NV D +DA++A L  K  LE L ++W
Sbjct: 692 FIVGKSKELGIKELGDLLHLRGKLSILDLQNVVDIQDARDANLKDKHHLEELLMEW 747

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819724|emb|CAN69227.1| hypothetical protein VITISV_007111 [Vitis vinifera]

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/417 (45%), Positives = 278/417 (66%), Gaps = 24/417 (5%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           H L+NL  D+C  +F +H+ G +    H  L+ IG++IV +C G PLAA  LG LLR + 
Sbjct: 336 HELQNLSDDECWSVFKKHAFGNSSIDEHSNLALIGKEIVKKCGGLPLAATALGGLLRHEQ 395

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
               W  +LTSKIWDL  D+  I+ ALR+SY++LPS +KRCF+YC+  PK Y FD+R+++
Sbjct: 396 REDKWNVILTSKIWDLPSDKCGILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELI 455

Query: 121 LLWMAEGLLQ-HETYGKQ--MEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACW 177
            LWMAE L+Q  E YG+Q  +E+LG   FQ L SRSFFQ S  + S+F+MHDL++DLA +
Sbjct: 456 RLWMAESLIQCPERYGRQIEIEDLGDDYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKF 515

Query: 178 AFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLL-G 236
             GEI  S+E   +GN ++  S+  RH S++  ++D  K+FE  + +EYLRTF+AL +  
Sbjct: 516 VGGEICFSLEENLEGNQQQTISKKARHSSFIRGRYDVFKKFEAFYGMEYLRTFIALPIDA 575

Query: 237 TRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPE 296
           + +  +++N ++  ++P+L++LRV+SL GY I ++P+ + +LKHLRYL+ S T ++ LP+
Sbjct: 576 SWRCNWLSNKVLEGLMPKLQRLRVLSLSGYWISEIPSSVGDLKHLRYLNLSETGVKRLPD 635

Query: 297 S-------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA 337
           S                   +L   + NL NLRHL  +++N LEEM LRI KL SL+ L+
Sbjct: 636 SLGNLHNLETLVLSNCWRLIRLPLSIENLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLS 694

Query: 338 KFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
           KF+VGK N   +KELR++ HLQ  L IS LENV + +DA++A LN K+KLE L+++W
Sbjct: 695 KFIVGKDNGLNVKELRNMPHLQGGLCISNLENVANVQDARDASLNKKQKLEELTIEW 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450019|ref|XP_002272632.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] gi|451798996|gb|AGF69196.1| disease resistance protein At3g14460-like protein 3 [Vitis labrusca]

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/417 (45%), Positives = 278/417 (66%), Gaps = 24/417 (5%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           H L+NL  D+C  +F +H+ G +    H  L+ IG++IV +C G PLAA  LG LLR + 
Sbjct: 336 HELQNLSDDECWSVFKKHAFGNSSIDEHSNLALIGKEIVKKCGGLPLAATALGGLLRHEQ 395

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
               W  +LTSKIWDL  D+  I+ ALR+SY++LPS +KRCF+YC+  PK Y FD+R+++
Sbjct: 396 REDKWNVILTSKIWDLPSDKCGILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELI 455

Query: 121 LLWMAEGLLQ-HETYGKQ--MEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACW 177
            LWMAE L+Q  E YG+Q  +E+LG   FQ L SRSFFQ S  + S+F+MHDL++DLA +
Sbjct: 456 RLWMAESLIQCPERYGRQIEIEDLGDDYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKF 515

Query: 178 AFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLL-G 236
             GEI  S+E   +GN ++  S+  RH S++  ++D  K+FE  + +EYLRTF+AL +  
Sbjct: 516 VGGEICFSLEENLEGNQQQTISKKARHSSFIRGRYDVFKKFEAFYGMEYLRTFIALPIDA 575

Query: 237 TRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPE 296
           + +  +++N ++  ++P+L++LRV+SL GY I ++P+ + +LKHLRYL+ S T ++ LP+
Sbjct: 576 SWRCNWLSNKVLEGLMPKLQRLRVLSLSGYWISEIPSSVGDLKHLRYLNLSETGVKRLPD 635

Query: 297 S-------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA 337
           S                   +L   + NL NLRHL  +++N LEEM LRI KL SL+ L+
Sbjct: 636 SLGNLHNLETLVLSNCWRLIRLPLSIENLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLS 694

Query: 338 KFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
           KF+VGK N   +KELR++ HLQ  L IS LENV + +DA++A LN K+KLE L+++W
Sbjct: 695 KFIVGKDNGLNVKELRNMPHLQGGLCISNLENVANVQDARDASLNKKQKLEELTIEW 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736321|emb|CBI24959.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 189/417 (45%), Positives = 278/417 (66%), Gaps = 24/417 (5%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           H L+NL  D+C  +F +H+ G +    H  L+ IG++IV +C G PLAA  LG LLR + 
Sbjct: 240 HELQNLSDDECWSVFKKHAFGNSSIDEHSNLALIGKEIVKKCGGLPLAATALGGLLRHEQ 299

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
               W  +LTSKIWDL  D+  I+ ALR+SY++LPS +KRCF+YC+  PK Y FD+R+++
Sbjct: 300 REDKWNVILTSKIWDLPSDKCGILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELI 359

Query: 121 LLWMAEGLLQ-HETYGKQ--MEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACW 177
            LWMAE L+Q  E YG+Q  +E+LG   FQ L SRSFFQ S  + S+F+MHDL++DLA +
Sbjct: 360 RLWMAESLIQCPERYGRQIEIEDLGDDYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKF 419

Query: 178 AFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLL-G 236
             GEI  S+E   +GN ++  S+  RH S++  ++D  K+FE  + +EYLRTF+AL +  
Sbjct: 420 VGGEICFSLEENLEGNQQQTISKKARHSSFIRGRYDVFKKFEAFYGMEYLRTFIALPIDA 479

Query: 237 TRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPE 296
           + +  +++N ++  ++P+L++LRV+SL GY I ++P+ + +LKHLRYL+ S T ++ LP+
Sbjct: 480 SWRCNWLSNKVLEGLMPKLQRLRVLSLSGYWISEIPSSVGDLKHLRYLNLSETGVKRLPD 539

Query: 297 S-------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA 337
           S                   +L   + NL NLRHL  +++N LEEM LRI KL SL+ L+
Sbjct: 540 SLGNLHNLETLVLSNCWRLIRLPLSIENLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLS 598

Query: 338 KFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
           KF+VGK N   +KELR++ HLQ  L IS LENV + +DA++A LN K+KLE L+++W
Sbjct: 599 KFIVGKDNGLNVKELRNMPHLQGGLCISNLENVANVQDARDASLNKKQKLEELTIEW 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450001|ref|XP_002272075.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/416 (47%), Positives = 260/416 (62%), Gaps = 22/416 (5%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           H L  L  D C  +F +H+    D   H  L  IG KIV +C G PLAAK LGSLLR K 
Sbjct: 336 HKLNPLSEDACWSVFEKHAFEHRDINDHPNLVSIGRKIVGKCGGLPLAAKALGSLLRSKQ 395

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
              +WE V +SKIWDL    S I+ AL +SY++LPSY+KRCFAYC+  PK ++F+ + +V
Sbjct: 396 SEAEWETVWSSKIWDLLSTESDILPALWLSYYHLPSYLKRCFAYCAMFPKNWKFESQGLV 455

Query: 121 LLWMAEGLLQH-ETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAF 179
           LLWMAEGL+Q  +  G+ ME+LG   F  L SRSFFQ S  D SRF+MHDLIHDLA    
Sbjct: 456 LLWMAEGLIQQPKGNGQTMEDLGANYFDELLSRSFFQPSTNDESRFVMHDLIHDLAQVVS 515

Query: 180 GEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLAL-LLG-T 237
           GEI   +E     N     S+  RH S++  ++D IK+FE   + E+LRTF+AL  LG +
Sbjct: 516 GEICFCLEYNLGSNPLSIISKQTRHSSFVRGRYDAIKKFEAFQEAEHLRTFVALPFLGRS 575

Query: 238 RKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES 297
              F+VT  +  H+VP+L++LRV+ L GY I +LP+ I ELKHLRYL+ S T I+ LP+S
Sbjct: 576 GPKFFVTRTVYDHLVPKLQRLRVLCLSGYLIPELPDSIGELKHLRYLNLSFTRIKSLPDS 635

Query: 298 -------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK 338
                              +L P++GNL+NLRHL       L+EMP +IGKL +L+TL+ 
Sbjct: 636 VSKLYNLQTIILFGCSNFRRLPPNIGNLINLRHLNVERCLNLDEMPQQIGKLKNLQTLSN 695

Query: 339 FVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
           F+VGK    G+KEL+ L HL+ K+ IS LENV + +DA +A L  K  +E L + W
Sbjct: 696 FIVGKSRYLGIKELKHLSHLRGKIFISRLENVVNIQDAIDANLRTKLNVEELIMSW 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497792|ref|XP_003635643.1| PREDICTED: putative disease resistance RPP13-like protein 1-like, partial [Vitis vinifera]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 190/425 (44%), Positives = 279/425 (65%), Gaps = 26/425 (6%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           + L+ L  DDCL +F + +LG  +F A+ +L E+GE+IV RC G PLAAK LG +LR++ 
Sbjct: 114 YPLQELSYDDCLSLFTRQALGARNFDAYPHLKEVGEEIVRRCKGLPLAAKALGGMLRNQL 173

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
           + + WED+LTSKIWDL E++S I+ AL++SYH+LPS++KRCFAYCS  PK Y F + +++
Sbjct: 174 NRRAWEDILTSKIWDLPEEKSHILPALKLSYHHLPSHLKRCFAYCSIFPKDYEFHKDELI 233

Query: 121 LLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFG 180
           LLWMAEG LQ      Q E+LG + F  L SRSFFQ S  ++S+FLMHDLI+DLA    G
Sbjct: 234 LLWMAEGFLQQTKGDNQPEKLGCEYFDDLFSRSFFQQSTQNSSQFLMHDLINDLAQSISG 293

Query: 181 EISSSMESTWDGNNERR-FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRK 239
           +I  + +   + N +    S   RHLS+   +++ +++FE  HK + LRT +AL L T  
Sbjct: 294 DICYNFDDELENNKQSTAVSEKARHLSFNRQRYEMMRKFEAFHKAKCLRTLVALPLTTFS 353

Query: 240 TFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDIAELKHLRYLDFSHTAIEVLPES- 297
           T+++++ ++  ++  ++ LRV+SL GY I + LPN I  LKHLRYL+ S + +  LP+S 
Sbjct: 354 TYFISSKVLDDLLKEMKCLRVLSLSGYFISEMLPNSIGGLKHLRYLNLSDSLMNRLPDSV 413

Query: 298 ------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 339
                             +L   +G L+NLRH+  S +  L+EMP ++G LT+L+TL+ F
Sbjct: 414 GHLYNLQTLILRNCYRLVELPMGIGGLINLRHVDISGAVQLQEMPPQMGNLTNLQTLSDF 473

Query: 340 VVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNSTT 399
           +VGKG+  G+KEL++L+ LQ KL+ISGL NV D +DA+   L  K+ ++ L+LKW     
Sbjct: 474 IVGKGSRSGVKELKNLLGLQGKLSISGLHNVVDIQDARSVNLQKKQNIKELTLKW----- 528

Query: 400 SSDSG 404
           SSD G
Sbjct: 529 SSDFG 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862409|emb|CAN81911.1| hypothetical protein VITISV_042289 [Vitis vinifera]

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 181/416 (43%), Positives = 277/416 (66%), Gaps = 20/416 (4%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           + L+ L   DCL +F Q +LG   F AH +L E+GE+IV RC G PLAAK LG +LR++ 
Sbjct: 332 YPLQELSHGDCLSLFTQQALGTRSFEAHPHLKELGEEIVRRCKGLPLAAKALGGMLRNEV 391

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
           +   W ++L SKIWDL +++SS++ AL++SYH+LPS +KRCFAYCS  PK Y FD+ +++
Sbjct: 392 NYDAWVNILKSKIWDLPQEKSSVLPALKLSYHHLPSNLKRCFAYCSIFPKDYEFDKDELI 451

Query: 121 LLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFG 180
           LLWMAEG LQ      Q E+LG K F  L SRSFFQ S  ++S+F+MHDLI+DLA +  G
Sbjct: 452 LLWMAEGFLQQTKGEDQPEDLGAKYFCDLLSRSFFQQSSYNSSKFVMHDLINDLAHFVAG 511

Query: 181 EISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGT-RK 239
           E+  +++   + N         RH S+     + +K+FE  ++V++LRT +AL +     
Sbjct: 512 ELCFNLDDKLENNEXFTSFEKARHSSFNRQSHEVLKKFETFYRVKFLRTLIALPINALSP 571

Query: 240 TFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES-- 297
           + +++  ++  ++ +   LRV+SL GY+I +LPN I +L+HLRYL+ S+++I+ LP+S  
Sbjct: 572 SNFISPKVIHDLLIQKSCLRVLSLSGYRISELPNSIGDLRHLRYLNLSYSSIKRLPDSIV 631

Query: 298 -----------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFV 340
                            +L  ++GNL+NLRHL  + ++ L EMP +IG LT+L+TL+KF+
Sbjct: 632 HLYNLQTLILRDCYRLTELPIEIGNLLNLRHLDITDTSQLLEMPSQIGSLTNLQTLSKFI 691

Query: 341 VGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN 396
           VG G+  G++ELR+L++LQ KL+ISGL NV + +DAK+A L  K+ ++ L+++W N
Sbjct: 692 VGSGSSLGIRELRNLLYLQGKLSISGLHNVVNVQDAKDANLADKQNIKELTMEWSN 747

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450003|ref|XP_002272221.1| PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 193/415 (46%), Positives = 259/415 (62%), Gaps = 22/415 (5%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           H L  L  D C  +F +H+    +   H  L  IG KIV +C G PLAAK LG LLR K 
Sbjct: 335 HELNPLSEDACWSVFEKHAFEHINMEDHPNLVSIGRKIVGKCGGLPLAAKALGGLLRSKQ 394

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
             ++WE V  SKIWD +     I+ ALR+SYHYLPSY+KRCFAYC+     Y FD + +V
Sbjct: 395 REEEWERVSNSKIWDFSSTECEILPALRLSYHYLPSYLKRCFAYCAMFRNDYEFDSKTLV 454

Query: 121 LLWMAEGLLQHETY-GKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAF 179
           LLWMAEGL+Q      + ME+LG  +F  L SRSFFQ S ID  RF+MHDLI DLA  A 
Sbjct: 455 LLWMAEGLIQQPIADNRTMEDLGDDNFCELLSRSFFQSSGIDEFRFVMHDLICDLARVAS 514

Query: 180 GEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLL-GTR 238
           GEI   +E   + N +   S+  RHLS++  +FD +K+FE   ++E+LRTF+AL + GT 
Sbjct: 515 GEICFCLEDNLESNRQSTISKETRHLSFIRGKFDVLKKFEAFQELEHLRTFVALPIHGTF 574

Query: 239 KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES- 297
              +VT+ +  H+VP+ +QLRV+SL  Y I +LP+ I  LKHLRYL+ S T I++LP+S 
Sbjct: 575 TESFVTSLVCDHLVPKFQQLRVLSLSEYVIFELPDSIGGLKHLRYLNLSFTQIKLLPDSV 634

Query: 298 ------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 339
                             +L  ++GNL++LRHL D     L+EMP +IGKL  L+TL+ F
Sbjct: 635 TNLYNLQTLILSNCKHLTRLPSNIGNLISLRHL-DVVGCSLQEMPQQIGKLKKLQTLSDF 693

Query: 340 VVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
           +V K    G+KEL+ L +L+ K+ IS LENV D +DA++A LN K  +E LS+ W
Sbjct: 694 IVAKRGFLGIKELKDLSNLRGKICISKLENVVDVQDARDANLNTKLNVENLSMIW 748

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487172|ref|XP_002264364.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 179/415 (43%), Positives = 273/415 (65%), Gaps = 21/415 (5%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           + L  L   DCL +F Q +LG+++F AH +L E+GE+IV RC G PLAAK LG +LR++ 
Sbjct: 339 YRLHELAYKDCLSVFTQQALGKSNFDAHSHLKEVGEEIVRRCKGLPLAAKALGGMLRNQV 398

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
               WE++LTSKIWDL ED+S ++ AL++SYH+LPS++K+CFAYCS  PKGY FD+ +++
Sbjct: 399 SHDAWENILTSKIWDLPEDKSQVLPALKLSYHHLPSHLKKCFAYCSIFPKGYEFDKDELI 458

Query: 121 LLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFG 180
            LWMAEG  Q      + E+LG K F  L SRSFFQ S  D+SRF+MHDLI+DLA +  G
Sbjct: 459 QLWMAEGFFQQTKENTRPEDLGSKYFYDLLSRSFFQQSNHDSSRFVMHDLINDLAQYVAG 518

Query: 181 EISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKT 240
           E   ++E     NN+    +  RH S+   +++ ++RF+  HK++ LRT ++L L     
Sbjct: 519 EFCFNLEGILVNNNQSTTFKKARHSSFNRQEYEMLERFKAFHKMKCLRTLISLPLNAFSR 578

Query: 241 F-YVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIEVLPES- 297
           + ++ + ++ ++V +   LRV+SL GY I  +LP+ I +L+HLRYL+ S+++I++LP S 
Sbjct: 579 YHFIPSKVINNLVKQFECLRVLSLSGYYISGELPHSIGDLRHLRYLNLSNSSIKMLPNSV 638

Query: 298 ------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 339
                             KL   +G L+NLRH+  S ++ L+EMP +I  LT+L+TL+K+
Sbjct: 639 GHLYNLQTLILSDCWRLTKLPVVIGGLINLRHIDISGTSQLQEMPFKISNLTNLQTLSKY 698

Query: 340 VVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
           +VGK +   ++EL +L  L+ KL+ISGL NV +++DA  A+L  K  +E L+++W
Sbjct: 699 IVGKNDNSRIRELENLQDLRGKLSISGLHNVVNSQDAMHAKLEEKHNIEELTMEW 753

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.977	0.374	0.408	3.3e-73
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.952	0.270	0.359	8.6e-53
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.935	0.209	0.275	4.5e-29
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.799	0.348	0.272	3e-25
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.925	0.441	0.297	8e-23
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.846	0.383	0.268	2.6e-21
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.858	0.390	0.267	2.5e-20
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.801	0.366	0.268	4.2e-20
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.717	0.319	0.283	3e-19
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.811	0.368	0.263	5e-19

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 3.3e-73, P = 3.3e-73
 Identities = 173/424 (40%), Positives = 247/424 (58%)

Query:     1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
             H+L+ L   DC  +F++   G  +   ++ + ++ E+IV +C G PLA KTLG +LR + 
Sbjct:   329 HNLQPLSDGDCWSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEG 388

Query:    61 DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIV 120
                +WE VL+S+IWDL  D+S+++  LRVSY+YLP+++KRCFAYCS  PKG+ F++ ++V
Sbjct:   389 KVIEWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVV 448

Query:   121 LLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFG 180
             LLWMAEG LQ     K +EELG + F  L SRS  Q +K   +R++MHD I++LA +A G
Sbjct:   449 LLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK---TRYIMHDFINELAQFASG 505

Query:   181 EISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKT 240
             E SS  E   DG  + + S   R+LSYL   +     FE L +V++LRTFL L L     
Sbjct:   506 EFSSKFE---DGC-KLQVSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSR 561

Query:   241 FYVTNNLVFH-VVPRLRQLRVVSLCGYKIVQLPNDIAE-LKHLRYLDFSHTAIEVLPES- 297
                 + +V   ++P L +LRV+SL  YKI +LP D  + + H R+LD S T +E LP+S 
Sbjct:   562 SCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSL 621

Query:   298 -----------------KLFP-DVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 339
                              K  P D+ NL+NLR+L D     L +MP R G+L SL+TL  F
Sbjct:   622 CYMYNLQTLLLSYCSSLKELPTDISNLINLRYL-DLIGTKLRQMPRRFGRLKSLQTLTTF 680

Query:   340 VVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNSTT 399
              V   +   + EL  L  L  KL I  L+ V D  DA EA LN K+ L  +   W   ++
Sbjct:   681 FVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSS 740

Query:   400 SSDS 403
             SS++
Sbjct:   741 SSEN 744

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 8.6e-53, P = 8.6e-53
 Identities = 149/415 (35%), Positives = 220/415 (53%)

Query:     1 HSLRNLLRDDCLCIFVQHSLGRTDFVA-HQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDK 59
             + ++ +  ++C  +  + + G     + +Q L  IG++I ++C G PLAA+ + S LR K
Sbjct:   324 YQMKLMTNEECWELISRFAFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSK 383

Query:    60 YDPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQI 119
              +P DW  V  SK  + +   +SI+  L++SY  LP  +KRCFA CS  PKG+ FD  ++
Sbjct:   384 PNPDDWYAV--SK--NFSSYTNSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREEL 439

Query:   120 VLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAF 179
             VLLWMA  LL      +++E++G      L ++SFFQ   I  + F+MHDL++DLA    
Sbjct:   440 VLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVS 499

Query:   180 GEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTR- 238
             G+    +E     +N        RH S+  SQ D    F  +   E+LRT L     T  
Sbjct:   500 GDFCFRLED----DNIPEIPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSL 555

Query:   239 KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPE-- 296
             ++  +T  ++  ++  L  LR++SL  Y+I  LP  +  LK LRYLD S T I+ LPE  
Sbjct:   556 ESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFV 615

Query:   297 -----------------SKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF 339
                              + L   +  L+NLR L D     L EMP  I KL SL+ L+ F
Sbjct:   616 CTLCNLQTLLLSNCRDLTSLPKSIAELINLR-LLDLVGTPLVEMPPGIKKLRSLQKLSNF 674

Query:   340 VVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 394
             V+G+ +  GL EL+ L HL+  L IS L+NV  A +AK+A L  K  L+ L LKW
Sbjct:   675 VIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKW 729

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 338 (124.0 bits), Expect = 4.5e-29, P = 4.5e-29
 Identities = 115/417 (27%), Positives = 200/417 (47%)

Query:     3 LRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDP 62
             L  L  DD   +F  H+ G     +   L  +G++I     G+PLAAKT+GSLL      
Sbjct:   462 LEALKDDDIWSLFKVHAFGNDKHDSSPGLQVLGKQIASELKGNPLAAKTVGSLLGTNLTI 521

Query:    63 KDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLL 122
               W+ ++ S+ W   +    IM AL++SY +L + +++C +YCS  PKGY F + Q++ +
Sbjct:   522 DHWDSIIKSEEWKSLQQAYGIMQALKLSYDHLSNPLQQCVSYCSLFPKGYSFSKAQLIQI 581

Query:   123 WMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQW---SKIDASRFLMHDLIHDLACWAF 179
             W+A+G ++  +  +++E+ G K    L +  F Q    ++  +  F+MHDL+HDLA    
Sbjct:   582 WIAQGFVEESS--EKLEQKGWKYLAELVNSGFLQQVESTRFSSEYFVMHDLMHDLA---- 635

Query:   180 GEISSSMESTWDGNNERRFSRNLRHLSYLTS------QFDGIKR---FEG-LHKVEYLRT 229
              ++S +  +T DG+     + ++RHLS +T       ++  I R   FE  L KV+    
Sbjct:   636 QKVSQTEYATIDGSECTELAPSIRHLSIVTDSAYRKEKYRNISRNEVFEKRLMKVKSRSK 695

Query:   230 FLAL-LLGTRKT-FYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDF- 286
               +L L+G   + F+      F     LR L++ +        L + +    HLRYL   
Sbjct:   696 LRSLVLIGQYDSHFFKYFKDAFKEAQHLRLLQITATYADSDSFL-SSLVNSTHLRYLKIV 754

Query:   287 SHTAIEVLPES--KLFP----DVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFV 340
             +  +   LP S  K +     D+G    +  + +  +NLL    LR   L +   +   +
Sbjct:   755 TEESGRTLPRSLRKYYHLQVLDIGYRFGIPRISNDINNLLS---LR--HLVAYDEVCSSI 809

Query:   341 VGKGNCYGLKELRSLMHLQEKLT---ISGLENVNDAEDAKEAQL-NGKEKLEALSLK 393
                G    L+EL + + +Q  L+   ++ L+++N       +QL N + + EA   K
Sbjct:   810 ANIGKMTSLQELGNFI-VQNNLSGFEVTQLKSMNKLVQLSVSQLENVRTQEEACGAK 865

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 3.0e-25, P = 3.0e-25
 Identities = 97/356 (27%), Positives = 160/356 (44%)

Query:     1 HSLRNLLRDDCLCIFVQHSLGRT-DFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDK 59
             H +  L  D+   +F   +   + +    Q L  I  K+V+RC G PLA  +LGS++  K
Sbjct:   331 HEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTK 390

Query:    60 YDPKDWEDVLTSKIWDLAEDRSS--IMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDER 117
                 +W+ V ++  W+L  +     +   + +S++ LP  +KRCF YCS  P  YR   +
Sbjct:   391 KFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRK 450

Query:   118 QIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQ---WSKIDASR-FLMHDLIHD 173
             +++ +WMA+  ++    G + EE+       L  R+  Q   W+     + F MHD+I +
Sbjct:   451 RLIRMWMAQRFVE-PIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWE 509

Query:   174 LACWA--FGEISSSMESTWDGNNERRFSRNL--RHLSYLTSQFDGIKRFEGLHKVEYLRT 229
             +A                 DG++      N   RHL           R   LH +     
Sbjct:   510 IALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATNLHSL----- 564

Query:   230 FLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHT 289
                L+  + K           ++P L  LR + L    I +LP+ +  + +L+YL+ S T
Sbjct:   565 ---LVCSSAKH-------KMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKT 614

Query:   290 AIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGN 345
              ++ LP++  F     LVNL  L   HS + EE+PL + KL  LR L  F   +G+
Sbjct:   615 QVKELPKN--FH---KLVNLETLNTKHSKI-EELPLGMWKLKKLRYLITFRRNEGH 664

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 8.0e-23, P = 8.0e-23
 Identities = 130/437 (29%), Positives = 204/437 (46%)

Query:     1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
             H LR L  ++   +F + +    + V    L   G+++V +C G PLA   L  LL  K 
Sbjct:   322 HKLRFLTFEESWTLFERKAFSNIEKVDED-LQRTGKEMVKKCGGLPLAIVVLSGLLSRKR 380

Query:    61 DPKDWEDVLTSKIWDLAEDRS-SIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQI 119
                +W +V  S +W   +D S  I     +S+  +   +K CF Y S  P+ Y     ++
Sbjct:   381 T-NEWHEVCAS-LWRRLKDNSIHISTVFDLSFKEMRHELKLCFLYFSVFPEDYEIKVEKL 438

Query:   120 VLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFL---MHDLIHDLAC 176
             + L +AEG +Q E     ME++ R     L  RS  +  +I+  + +   +HDL+ DLA 
Sbjct:   439 IHLLVAEGFIQ-EDEEMMMEDVARCYIDELVDRSLVKAERIERGKVMSCRIHDLLRDLAI 497

Query:   177 WAFGEISSSMESTWDGNNERRFSRNL--RH-LSYLTSQFDGIKRFEGLHKVEYLRTFLAL 233
                 E++    + +   NE++ S ++  R  + +L + +    R   ++K   +R+FL  
Sbjct:   498 KKAKELN--FVNVY---NEKQHSSDICRREVVHHLMNDYYLCDR--RVNK--RMRSFL-- 546

Query:   234 LLGTRKTF-YV-TNNLVFHVVPRLRQLRVVSLCGYKIVQ------LPNDIAELKHLRYLD 285
              +G R+ F YV T NL      +L+ LRV+++ G   V       LP+ I EL HLRYL 
Sbjct:   547 FIGERRGFGYVNTTNL------KLKLLRVLNMEGLLFVSKNISNTLPDVIGELIHLRYLG 600

Query:   286 FSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR-TLAKFV---- 340
              + T + +LP S     + NL  L+ L D+  N   +    + KLTSLR  + KFV    
Sbjct:   601 IADTYVSILPAS-----ISNLRFLQTL-DASGNDPFQYTTDLSKLTSLRHVIGKFVGECL 654

Query:   341 VGKGNCYGLKELRSLMHLQ-EKLTISGLENVNDAE--------DAKEAQLN----GKEK- 386
             +G+G    L+ LRS+      KL    L N+ D E        D +   LN     K K 
Sbjct:   655 IGEG--VNLQTLRSISSYSWSKLNHELLRNLQDLEIYDHSKWVDQRRVPLNFVSFSKPKN 712

Query:   387 LEALSLKWVNSTTSSDS 403
             L  L L+  N   SS+S
Sbjct:   713 LRVLKLEMRNFKLSSES 729

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 2.6e-21, P = 2.6e-21
 Identities = 100/372 (26%), Positives = 164/372 (44%)

Query:     6 LLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDW 65
             L  +D   +F Q  +G+    +H  + E+ +K+  +C G PLA   +G  +  K   ++W
Sbjct:   310 LSTNDAWELF-QEKVGQISLGSHPDILELAKKVAGKCRGLPLALNVIGETMAGKRAVQEW 368

Query:    66 E---DVLTSKIWDLAEDRSSIMGALRVSYHYL-PSYVKRCFAYCSFLPKGYRFDERQIVL 121
                 DVLTS   + +     I+  L+ SY  L   +V+ CF YC+  P+ Y   + +++ 
Sbjct:   369 HHAVDVLTSYAAEFSGMDDHILLILKYSYDNLNDKHVRSCFQYCALYPEDYSIKKYRLID 428

Query:   122 LWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGE 181
              W+ EG +      ++    G +    L           +     MHD++ ++A W   +
Sbjct:   429 YWICEGFIDGNIGKERAVNQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMALWTLSD 488

Query:   182 ISSSMES--TWDGNNERRFSR-----NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALL 234
             +  + E      G+  R+  +      +R LS + +   GI+   G  +   L T    L
Sbjct:   489 LGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNN---GIEEISGSPECPELTTLF--L 543

Query:   235 LGTRKTFYVTNNLVFHVVPRLRQLRVVSLC-GYKIVQLPNDIAELKHLRYLDFSHTAIEV 293
                +   +++     H    +R+L V+ L   +++  LP  I+EL  LRYLD SHT IE 
Sbjct:   544 QENKSLVHISGEFFRH----MRKLVVLDLSENHQLDGLPEQISELVALRYLDLSHTNIEG 599

Query:   294 LPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVG-KGNCYGLKEL 352
             LP      D+  L+   HL       L  +   I KL+SLRTL         +   +KEL
Sbjct:   600 LPAC--LQDLKTLI---HLNLECMRRLGSIA-GISKLSSLRTLGLRNSNIMLDVMSVKEL 653

Query:   353 RSLMHLQEKLTI 364
               L HL E LTI
Sbjct:   654 HLLEHL-EILTI 664

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 2.5e-20, P = 2.5e-20
 Identities = 102/381 (26%), Positives = 172/381 (45%)

Query:     3 LRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDP 62
             +R L  DD   +F +  +G     +H  +  +   +  +C G PLA   +G  +  K   
Sbjct:   308 VRCLAPDDAWDLFTK-KVGEITLGSHPEIPTVARTVAKKCRGLPLALNVIGETMAYKRTV 366

Query:    63 KDWE---DVLTSKIWDLAEDRSSIMGALRVSYHYLPS-YVKRCFAYCSFLPKGYRFDERQ 118
             ++W    DVLTS   + +     I+  L+ SY  L S  +K CF YC+  P+ +  ++  
Sbjct:   367 QEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSEQLKLCFQYCALFPEDHNIEKND 426

Query:   119 IVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWA 178
             +V  W+ EG +     GK  E  G +   +L  RS     + +     MHD++ ++A W 
Sbjct:   427 LVDYWIGEGFIDRNK-GKA-ENQGYEIIGIL-VRSCLLMEE-NQETVKMHDVVREMALWI 482

Query:   179 FGEISSSMES--TWDGNNERRFSR--NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALL 234
               +     E+     G   R        +    ++  F+ I   E +         + LL
Sbjct:   483 ASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNI---ESIRDAPESPQLITLL 539

Query:   235 LGTRKTF--YVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIE 292
             L  RK F  +++++  F ++P L  L + S+    +  LPN+I+E   L+YL  S T I 
Sbjct:   540 L--RKNFLGHISSSF-FRLMPMLVVLDL-SM-NRDLRHLPNEISECVSLQYLSLSRTRIR 594

Query:   293 VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVG--KGNCYGLK 350
             + P   +      L  L +L   ++ ++E +   I  LTSL+ L  FV G  +  C  L 
Sbjct:   595 IWPAGLV-----ELRKLLYLNLEYTRMVESI-CGISGLTSLKVLRLFVSGFPEDPCV-LN 647

Query:   351 ELRSLMHLQEKLTIS-GLENV 370
             EL+ L +LQ  LTI+ GL ++
Sbjct:   648 ELQLLENLQT-LTITLGLASI 667

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 4.2e-20, P = 4.2e-20
 Identities = 97/361 (26%), Positives = 165/361 (45%)

Query:    16 VQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWE---DVLTSK 72
             ++  +G     +H  + ++  K+ ++C G PLA   +G  +  K   ++W    +VLTS 
Sbjct:   322 LKKKVGENTLGSHPDIPQLARKVSEKCCGLPLALNVIGETMSFKRTIQEWRHATEVLTSA 381

Query:    73 IWDLAEDRSSIMGALRVSYHYLPSY-VKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQH 131
               D +     I+  L+ SY  L     K CF YCS  P+ +   +  ++  W+ EG ++ 
Sbjct:   382 T-DFSGMEDEILPILKYSYDSLNGEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIK- 439

Query:   132 ETYGKQMEELGRKSFQVLHS--RS--FFQWSKIDASRFLMHDLIHDLACWAFGEISSSME 187
             E  G+  E+   + + +L +  RS    + +K D     MHD++ ++A W F ++    E
Sbjct:   440 EKQGR--EKAFNQGYDILGTLVRSSLLLEGAK-DKDVVSMHDMVREMALWIFSDLGKHKE 496

Query:   188 ----STWDGNNERRFSRNLRHLSYLTSQFDGIKRFEGLHK-VEYLRTFLALLLGTRKTFY 242
                     G +E     N R +  ++   +  ++  G  + VE +  FL       K   
Sbjct:   497 RCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSPECVELITLFLQ---NNYKLVD 553

Query:   243 VTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPD 302
             ++    F  +P L  L +     + + +LP +I+EL  L+YLD S T IE LP       
Sbjct:   554 ISMEF-FRCMPSLAVLDLSE--NHSLSELPEEISELVSLQYLDLSGTYIERLPHG----- 605

Query:   303 VGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL----AKFVVGKGNCYGLKELRSLMHL 358
             +  L  L HLK   +  LE +   I  L+SLRTL    +K  +  G    +KEL+ L HL
Sbjct:   606 LHELRKLVHLKLERTRRLESIS-GISYLSSLRTLRLRDSKTTLDTGL---MKELQLLEHL 661

Query:   359 Q 359
             +
Sbjct:   662 E 662

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 93/328 (28%), Positives = 161/328 (49%)

Query:    31 LSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDL----AEDRSSIMGA 86
             + ++G++++  C G PLA K LG LL  KY   DWE +  +   D+    + + SSI   
Sbjct:   349 MEDMGKQMLKHCGGLPLAIKVLGGLLAAKYTMHDWERLSVNIGSDIVGRTSSNNSSIYHV 408

Query:    87 LRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETY--GKQMEELGRK 144
             L +S+  LPSY+K CF Y +  P+ ++ +  ++   W AEG+   E Y  G+ ++++G+ 
Sbjct:   409 LSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQS 468

Query:   145 SFQVLHSRSFFQWSK-IDASRF---LMHDLIHDLACWA-----FGEI---SSSMESTWDG 192
               + L  R+   W +   ASRF    +HD++ ++  +      F +I   S  + S+  G
Sbjct:   469 YLEELVRRNMIIWERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTG 528

Query:   193 NNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTN-NLVFHV 251
             N++    R+ R L Y       ++R     K   LR+ + L        +V N  L+   
Sbjct:   529 NSQSP-CRS-RRLVYQCPTTLHVERDINNPK---LRSLVVLW----HDLWVENWKLLGTS 579

Query:   252 VPRLRQLRVVSL--CGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNL 309
               RL+ LRV+ L    ++ ++LP  I  L HLRYL      +  LP S     +GNL+ L
Sbjct:   580 FTRLKLLRVLDLFYVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSS-----LGNLMLL 634

Query:   310 RHLK---DSHSNLLEEMPLRIGKLTSLR 334
              +L    D+    + ++ +R+ +L  L+
Sbjct:   635 IYLNLDVDTEFIFVPDVFMRMHELRYLK 662

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.0e-19, P = 5.0e-19
 Identities = 96/364 (26%), Positives = 159/364 (43%)

Query:    17 QHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDW---EDVLTSKI 73
             Q  +G+    +H  +  +  K+  +C G PLA   +G  +  K    +W    DVLTS  
Sbjct:   323 QMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRTVHEWCHAIDVLTSSA 382

Query:    74 WDLAEDRSSIMGALRVSYHYLPS-YVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHE 132
              D +     I+  L+ SY  L    +K CF YCS  P+ Y  D+  +V  W++EG + +E
Sbjct:   383 IDFSGMEDEILHVLKYSYDNLNGELMKSCFLYCSLFPEDYLIDKEGLVDYWISEGFI-NE 441

Query:   133 TYGKQME-ELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSSMES--T 189
               G++     G +    L         + + S   MHD++ ++A W   ++    E    
Sbjct:   442 KEGRERNINQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIV 501

Query:   190 WDGNNERRFSR-----NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVT 244
               G   R   +      +R +S + ++ + I  F+  H+   L T   L L       ++
Sbjct:   502 RAGVGLREVPKVKDWNTVRKISLMNNEIEEI--FDS-HECAALTT---LFLQKNDVVKIS 555

Query:   245 NNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVG 304
                 F  +P L  L +       + +LP +I+EL  LRY + S+T I  LP       + 
Sbjct:   556 AEF-FRCMPHLVVLDLSE--NQSLNELPEEISELASLRYFNLSYTCIHQLPVG-----LW 607

Query:   305 NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL----AKFVVGKGNCYGLKELRSLMHLQE 360
              L  L HL   H + L  + L I  L +LRTL    ++ ++       +KEL+ L HL E
Sbjct:   608 TLKKLIHLNLEHMSSLGSI-LGISNLWNLRTLGLRDSRLLLDMSL---VKELQLLEHL-E 662

Query:   361 KLTI 364
              +T+
Sbjct:   663 VITL 666

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	404
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	6e-26
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  105 bits (264), Expect = 6e-26
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 3/132 (2%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
           H + +L  ++   +F      +        L E+ ++IV++C G PLA K LG LL  K 
Sbjct: 151 HEVESLEPEESWELFSNKVFEKEL-PPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKS 209

Query: 61  DPKDWEDVLTSKIWDLAEDRS--SIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQ 118
             ++WE VL     +LA       ++  L +SY  LP ++KRCF Y +  P+ Y   + Q
Sbjct: 210 TVQEWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQ 269

Query: 119 IVLLWMAEGLLQ 130
           ++ LW+AEG + 
Sbjct: 270 LIKLWIAEGFVI 281

Length = 285

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 6/68 (8%)

Query: 270 QLPNDIAELKHLRYLDFSHTAIE-VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIG 328
            +PNDI++L+HL+ ++ S  +I   +P S     +G++ +L  L  S+++    +P  +G
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPS-----LGSITSLEVLDLSYNSFNGSIPESLG 487

Query: 329 KLTSLRTL 336
           +LTSLR L
Sbjct: 488 QLTSLRIL 495

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 256 RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDS 315
             L+ + L   KI  LP+ +  L +L+ LD S   +  LP+        NL NL +L D 
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-----SNLSNLNNL-DL 193

Query: 316 HSNLLEEMPLRIGKLTSLRTL 336
             N + ++P  I  L++L  L
Sbjct: 194 SGNKISDLPPEIELLSALEEL 214

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	404
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.36
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.35
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.34
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.32
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.27
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.25
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.19
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.9
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.8
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.77
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.57
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.54
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.47
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.46
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.41
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.36
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.25
PLN03150	623	hypothetical protein; Provisional	98.22
PLN03150	623	hypothetical protein; Provisional	98.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.03
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.99
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.41
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
PRK15386	426	type III secretion protein GogB; Provisional	97.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.07
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.07
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.66
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.45
PRK15386	426	type III secretion protein GogB; Provisional	96.43
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.96
PRK04841	903	transcriptional regulator MalT; Provisional	95.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.62
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.55
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.51
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.09
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.72
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.08
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.96
smart00370	26	LRR Leucine-rich repeats, outliers.	91.96
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.91
KOG2982	418	consensus Uncharacterized conserved protein [Funct	90.86
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.49
smart00370	26	LRR Leucine-rich repeats, outliers.	90.49
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.35
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	85.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	84.38
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.73
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	83.65
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.46
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	80.6

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-52  Score=426.34  Aligned_cols=382  Identities=27%  Similarity=0.405  Sum_probs=305.7

Q ss_pred             CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhc----
Q 046301            1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDL----   76 (404)
Q Consensus         1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~----   76 (404)
                      ++|++|+++|||+||++.||+... ...++++++|++|+++|+|+|||+.++|+.|+.|++..+|+.+.+.+.+..    
T Consensus       312 ~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~  390 (889)
T KOG4658|consen  312 IEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF  390 (889)
T ss_pred             ccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence            579999999999999999986643 344669999999999999999999999999999999999999998765542    


Q ss_pred             cccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCcc
Q 046301           77 AEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQ  156 (404)
Q Consensus        77 ~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~  156 (404)
                      ....+.++.+|++|||+||++.|.||+|||.||+|++|+++.++.+|+|+||+.+..++..+++.|+.++.+|+++||+.
T Consensus       391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~  470 (889)
T KOG4658|consen  391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI  470 (889)
T ss_pred             CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence            22346899999999999998899999999999999999999999999999999997778889999999999999999998


Q ss_pred             ccc--CCCceEEechHHHHHHHhhhc-----CceEEcccccC--CCCccccCCCcceEEEEeccCccccccccccCCCCc
Q 046301          157 WSK--IDASRFLMHDLIHDLACWAFG-----EISSSMESTWD--GNNERRFSRNLRHLSYLTSQFDGIKRFEGLHKVEYL  227 (404)
Q Consensus       157 ~~~--~~~~~~~mhdli~~~~~~i~~-----~~~~~~~~~~~--~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L  227 (404)
                      ..+  ....+|+|||++||||.|++.     ++.........  .......+..+|+++++.+.+...   ....+.+.|
T Consensus       471 ~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L  547 (889)
T KOG4658|consen  471 EERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKL  547 (889)
T ss_pred             hcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCcc
Confidence            755  345789999999999999999     45443332101  011222345689999988876543   344556689


Q ss_pred             cEEEecccCccccccccchhhhhhhccCccccEEEecCCC-ccccCcccccCCCcceEecCCCCcccCCCCCCCcccccc
Q 046301          228 RTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNL  306 (404)
Q Consensus       228 ~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l  306 (404)
                      ++|.+..+..     ....+...+|..++.|++|||++|. +..+|..|+.|.+||||+++++.++.+|.+     +++|
T Consensus       548 ~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~-----l~~L  617 (889)
T KOG4658|consen  548 RTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG-----LGNL  617 (889)
T ss_pred             ceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH-----HHHH
Confidence            9999987652     2455667779999999999999876 779999999999999999999999988876     9999


Q ss_pred             ccCceeecCCCCccccccccccccccccccCceEec-cCCcCCccccccccccccceEEcCCCC---C------------
Q 046301          307 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVG-KGNCYGLKELRSLMHLQEKLTISGLEN---V------------  370 (404)
Q Consensus       307 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~-~~~~~~~~~l~~L~~L~~~L~l~~~~~---~------------  370 (404)
                      ..|.+|++..+..+..+|..+..|++|++|.++... ......+.++..|.+|+ .+.++..+.   .            
T Consensus       618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~~~~e~l~~~~~L~~~~  696 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSVLLLEDLLGMTRLRSLL  696 (889)
T ss_pred             HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchhHhHhhhhhhHHHHHHh
Confidence            999999999997777776656679999999887654 22344566777777777 666644322   0            


Q ss_pred             ------CCHhHHHhccccCccCCCceEEEecCC
Q 046301          371 ------NDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       371 ------~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                            ........+.+..+.+|+.|.+..+..
T Consensus       697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~  729 (889)
T KOG4658|consen  697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGI  729 (889)
T ss_pred             HhhhhcccccceeecccccccCcceEEEEcCCC
Confidence                  011133445677888899999876654

>PLN03210 Resistant to P

Probab=100.00  E-value=1e-37  Score=334.16  Aligned_cols=356  Identities=20%  Similarity=0.215  Sum_probs=221.7

Q ss_pred             CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccc
Q 046301            1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDR   80 (404)
Q Consensus         1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~   80 (404)
                      |+|+.|+++|||+||+++||++..  +++++++++++|+++|+|+||||+++|+.|+++ +..+|+.+++++....   .
T Consensus       346 ~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~  419 (1153)
T PLN03210        346 YEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---D  419 (1153)
T ss_pred             EEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---c
Confidence            689999999999999999998753  456799999999999999999999999999998 8999999999875432   3


Q ss_pred             hhHHHHHHHHHhcCCh-hhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCccccc
Q 046301           81 SSIMGALRVSYHYLPS-YVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSK  159 (404)
Q Consensus        81 ~~i~~~l~~sy~~L~~-~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~~~  159 (404)
                      ..|.++|++||+.|++ .+|.||+|+||||.+.++   +.+..|++.+....           ...++.|+++||++.. 
T Consensus       420 ~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~-  484 (1153)
T PLN03210        420 GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR-  484 (1153)
T ss_pred             HHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc-
Confidence            5899999999999987 599999999999999654   34667777654432           1238899999999864 


Q ss_pred             CCCceEEechHHHHHHHhhhcCceEEccc---ccCCCC------ccccCCCcceEEEEeccCcccc-ccccccCCCCccE
Q 046301          160 IDASRFLMHDLIHDLACWAFGEISSSMES---TWDGNN------ERRFSRNLRHLSYLTSQFDGIK-RFEGLHKVEYLRT  229 (404)
Q Consensus       160 ~~~~~~~mhdli~~~~~~i~~~~~~~~~~---~~~~~~------~~~~~~~~r~l~~~~~~~~~~~-~~~~~~~~~~L~~  229 (404)
                        ..++.|||++|+||+++++++......   -|...+      .......++.+++..+...... ....+.++++|+.
T Consensus       485 --~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~  562 (1153)
T PLN03210        485 --EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLF  562 (1153)
T ss_pred             --CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccE
Confidence              357999999999999998765411000   011100      0111234566655544433221 1234667888888


Q ss_pred             EEecccCccccccccchhhhhhhcc-----------------------CccccEEEecCCCccccCcccccCCCcceEec
Q 046301          230 FLALLLGTRKTFYVTNNLVFHVVPR-----------------------LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDF  286 (404)
Q Consensus       230 L~~~~~~~~~~~~~~~~~~~~~~~~-----------------------l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l  286 (404)
                      |.+..............+ +..|..                       +.+|+.|++.++.+..+|.++..+++|++|++
T Consensus       563 L~~~~~~~~~~~~~~~~l-p~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~L  641 (1153)
T PLN03210        563 LKFYTKKWDQKKEVRWHL-PEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDL  641 (1153)
T ss_pred             EEEecccccccccceeec-CcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEEC
Confidence            877543210000000111 111222                       23445555555555555555555555555555


Q ss_pred             CCC-CcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEc
Q 046301          287 SHT-AIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTIS  365 (404)
Q Consensus       287 ~~~-~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~  365 (404)
                      +++ .++.+|.      ++.+++|++|++++|..+..+|.+++++++|+.|++..+...  ..++.-.++++|+ .|.++
T Consensus       642 s~~~~l~~ip~------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L--~~Lp~~i~l~sL~-~L~Ls  712 (1153)
T PLN03210        642 RGSKNLKEIPD------LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL--EILPTGINLKSLY-RLNLS  712 (1153)
T ss_pred             CCCCCcCcCCc------cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc--CccCCcCCCCCCC-EEeCC
Confidence            554 2444331      555666666666666556666666666666666644322111  1111111455555 56666


Q ss_pred             CCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          366 GLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       366 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +|..+..++.       ...+|+.|+++.+.
T Consensus       713 gc~~L~~~p~-------~~~nL~~L~L~~n~  736 (1153)
T PLN03210        713 GCSRLKSFPD-------ISTNISWLDLDETA  736 (1153)
T ss_pred             CCCCcccccc-------ccCCcCeeecCCCc
Confidence            5554433322       12456666665554

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.83  E-value=1.4e-21  Score=180.18  Aligned_cols=131  Identities=31%  Similarity=0.605  Sum_probs=106.7

Q ss_pred             CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccc--
Q 046301            1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAE--   78 (404)
Q Consensus         1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~--   78 (404)
                      |+|++|+++||++||++.++... ...++.+++++++|+++|+|+||||+++|++|+.+.+...|+.+++.+.....+  
T Consensus       152 ~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~  230 (287)
T PF00931_consen  152 IELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESR  230 (287)
T ss_dssp             EECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSS
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            57899999999999999997655 223455668899999999999999999999997766789999998876554432  


Q ss_pred             -cchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccC
Q 046301           79 -DRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHE  132 (404)
Q Consensus        79 -~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~  132 (404)
                       ....+..++..||+.||++.|+||+|||+||+++.|+++.++.+|+++|++...
T Consensus       231 ~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  231 DYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             GSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred             cccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence             347899999999999999999999999999999999999999999999999763

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.36  E-value=5.8e-14  Score=113.17  Aligned_cols=163  Identities=21%  Similarity=0.255  Sum_probs=127.2

Q ss_pred             cccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCccc
Q 046301          214 GIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEV  293 (404)
Q Consensus       214 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~  293 (404)
                      .+...+++.+++.+..|.+..+.       . ...+..+..+.+|++|++.+|+++++|.+++.|+.|+.|++.-|++..
T Consensus        22 sf~~~~gLf~~s~ITrLtLSHNK-------l-~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~   93 (264)
T KOG0617|consen   22 SFEELPGLFNMSNITRLTLSHNK-------L-TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI   93 (264)
T ss_pred             cHhhcccccchhhhhhhhcccCc-------e-eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc
Confidence            33456677788888888887765       2 233445888999999999999999999999999999999999999987


Q ss_pred             CCCCCCCccccccccCceeecCCCCccc-cccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCC
Q 046301          294 LPESKLFPDVGNLVNLRHLKDSHSNLLE-EMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVND  372 (404)
Q Consensus       294 lp~~~~p~~~~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~  372 (404)
                      +|.+     ++.+|.|+.||+.+|+... .+|-.|-.|+.|+.|.+.+++.  ...+.++++|++|+ .|.+.+..-   
T Consensus        94 lprg-----fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lq-il~lrdndl---  162 (264)
T KOG0617|consen   94 LPRG-----FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQ-ILSLRDNDL---  162 (264)
T ss_pred             Cccc-----cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhccee-EEeeccCch---
Confidence            7776     9999999999999884333 5777788888888885443222  34567899999999 888877443   


Q ss_pred             HhHHHhccccCccCCCceEEEecCC
Q 046301          373 AEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       373 ~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                        -.+|..++.+..|+.|+++.|+-
T Consensus       163 --l~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  163 --LSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             --hhCcHHHHHHHHHHHHhccccee
Confidence              23456688889999999988863

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.35  E-value=1.5e-14  Score=116.47  Aligned_cols=152  Identities=20%  Similarity=0.211  Sum_probs=123.7

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK  279 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~  279 (404)
                      ..+.++.+.++....  ..+.+..+.+|..|.++++.        ....+..+++++.||.|++.-|.+..+|.+++.++
T Consensus        33 s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnq--------ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p  102 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQ--------IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP  102 (264)
T ss_pred             hhhhhhhcccCceee--cCCcHHHhhhhhhhhcccch--------hhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence            456777777776654  34667778888888887765        23345568999999999999999999999999999


Q ss_pred             CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccc
Q 046301          280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQ  359 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~  359 (404)
                      .|+.||+.+|++.+   ..+|..+..|+.|+-|++++| ....+|..+++|++|+.|.+.+++.  ...+.+++.|++|+
T Consensus       103 ~levldltynnl~e---~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lr  176 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNE---NSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLR  176 (264)
T ss_pred             hhhhhhcccccccc---ccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHH
Confidence            99999999998763   345666999999999999999 8999999999999999996554332  44677899999999


Q ss_pred             cceEEcCCC
Q 046301          360 EKLTISGLE  368 (404)
Q Consensus       360 ~~L~l~~~~  368 (404)
                       .|.|.+..
T Consensus       177 -elhiqgnr  184 (264)
T KOG0617|consen  177 -ELHIQGNR  184 (264)
T ss_pred             -HHhcccce
Confidence             99998754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.34  E-value=4.3e-14  Score=134.64  Aligned_cols=179  Identities=25%  Similarity=0.303  Sum_probs=126.9

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK  279 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~  279 (404)
                      ..+.+|+..++....  ....++.++.||++++..+.     -...+++++ +-.+..|.+|||+.|++.+.|..+..-+
T Consensus        55 qkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~-----LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AK  126 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNN-----LKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAK  126 (1255)
T ss_pred             hhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccc-----cccCCCCch-hcccccceeeecchhhhhhcchhhhhhc
Confidence            345666666665433  34567788999999887766     223444444 5678999999999999999999999999


Q ss_pred             CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccc
Q 046301          280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQ  359 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~  359 (404)
                      ++-+|+||+|+|..+|..    -+-+|+-|-.|+|+.| .+..+|+.+.+|..|++|.+.++... -..+.+|+++++|.
T Consensus       127 n~iVLNLS~N~IetIPn~----lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~  200 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIETIPNS----LFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLS  200 (1255)
T ss_pred             CcEEEEcccCccccCCch----HHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhh
Confidence            999999999999999875    4668888888888887 78888888888888888866544322 12345566666666


Q ss_pred             cceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          360 EKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       360 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                       .|.+++..   .....+|.++..+.+|..++++.|+
T Consensus       201 -vLhms~Tq---RTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  201 -VLHMSNTQ---RTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             -hhhccccc---chhhcCCCchhhhhhhhhccccccC
Confidence             66665432   2234455555556666666665554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.32  E-value=3.1e-12  Score=137.39  Aligned_cols=132  Identities=20%  Similarity=0.254  Sum_probs=83.2

Q ss_pred             CccccEEEecCCCcc-ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccc
Q 046301          255 LRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL  333 (404)
Q Consensus       255 l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L  333 (404)
                      +++|++|++++|.+. .+|..++.+++|++|++++|.+..    .+|..++++++|++|++++|.....+|..++++++|
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG----KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL  214 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc----cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence            455555555555554 556666667777777777766542    223347777777777777775555667777777777


Q ss_pred             cccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      ++|++..+... ...+..+.++++|+ .|++.++.    +.+..|..+.++++|+.|+++.|.
T Consensus       215 ~~L~L~~n~l~-~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        215 KWIYLGYNNLS-GEIPYEIGGLTSLN-HLDLVYNN----LTGPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             cEEECcCCccC-CcCChhHhcCCCCC-EEECcCce----eccccChhHhCCCCCCEEECcCCe
Confidence            77755433221 23445567777777 77776643    233455667788888888887765

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.27  E-value=4.6e-12  Score=136.05  Aligned_cols=107  Identities=20%  Similarity=0.314  Sum_probs=49.1

Q ss_pred             ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301          221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKL  299 (404)
Q Consensus       221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~  299 (404)
                      +.++++|+.|.+.++.       .....+..+.++++|++|++++|.+. .+|..++.+++|++|++++|.+..    .+
T Consensus       160 ~~~l~~L~~L~L~~n~-------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~----~~  228 (968)
T PLN00113        160 IGSFSSLKVLDLGGNV-------LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG----EI  228 (968)
T ss_pred             HhcCCCCCEEECccCc-------ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC----cC
Confidence            4445555555554433       11122333445555555555555543 344555555555555555554431    12


Q ss_pred             CccccccccCceeecCCCCccccccccccccccccccCc
Q 046301          300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK  338 (404)
Q Consensus       300 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~  338 (404)
                      |..++++++|++|++++|.....+|..++++++|++|.+
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL  267 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence            223455555555555554333344444444555554433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.25  E-value=2.1e-13  Score=129.99  Aligned_cols=160  Identities=22%  Similarity=0.167  Sum_probs=123.2

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKL  299 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~  299 (404)
                      .++.++.|.+|.+.+..+      .....+..+..+.+|+.+|++.|++..+|..+.++++|+.|+||+|.|+.+.-.  
T Consensus       192 QLPsmtsL~vLhms~TqR------Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~--  263 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQR------TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT--  263 (1255)
T ss_pred             cCccchhhhhhhcccccc------hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc--
Confidence            444555566665555442      222334557889999999999999999999999999999999999999987655  


Q ss_pred             CccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhc
Q 046301          300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEA  379 (404)
Q Consensus       300 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~  379 (404)
                         ++...+|++|+++.| .+..+|..+.+|++|+.|...++.......++.+++|.+|. .+...+     +..+..|.
T Consensus       264 ---~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le-vf~aan-----N~LElVPE  333 (1255)
T KOG0444|consen  264 ---EGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE-VFHAAN-----NKLELVPE  333 (1255)
T ss_pred             ---HHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH-HHHhhc-----cccccCch
Confidence               888899999999998 79999999999999999866554444444667788888887 666654     34577778


Q ss_pred             cccCccCCCceEEEecCC
Q 046301          380 QLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       380 ~l~~l~~L~~L~l~~~~~  397 (404)
                      .++.|..|+.|.|+.|.-
T Consensus       334 glcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  334 GLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             hhhhhHHHHHhcccccce
Confidence            888888888888888763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.19  E-value=5.4e-12  Score=114.67  Aligned_cols=177  Identities=23%  Similarity=0.260  Sum_probs=123.1

Q ss_pred             ceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcc
Q 046301          203 RHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLR  282 (404)
Q Consensus       203 r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~  282 (404)
                      ..+.+..+.+..   .+.++.++.|.-|.+..+.       ..-++.+....+..|.+||++.|+++++|.++..|++|.
T Consensus       209 ~~LyL~~Nki~~---lPef~gcs~L~Elh~g~N~-------i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~  278 (565)
T KOG0472|consen  209 ELLYLRRNKIRF---LPEFPGCSLLKELHVGENQ-------IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE  278 (565)
T ss_pred             HHHHhhhccccc---CCCCCccHHHHHHHhcccH-------HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence            334444444433   3455555666555544433       344556666788889999999999999999999899999


Q ss_pred             eEecCCCCcccCCCC-----------------------------------------------------------------
Q 046301          283 YLDFSHTAIEVLPES-----------------------------------------------------------------  297 (404)
Q Consensus       283 ~L~l~~~~l~~lp~~-----------------------------------------------------------------  297 (404)
                      +||+|+|.|+.+|.+                                                                 
T Consensus       279 rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~  358 (565)
T KOG0472|consen  279 RLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDI  358 (565)
T ss_pred             hhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccch
Confidence            999999888888876                                                                 


Q ss_pred             -------------------------------------------------------------------CCCccccccccCc
Q 046301          298 -------------------------------------------------------------------KLFPDVGNLVNLR  310 (404)
Q Consensus       298 -------------------------------------------------------------------~~p~~~~~l~~L~  310 (404)
                                                                                         -+|..++.+++|.
T Consensus       359 ~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt  438 (565)
T KOG0472|consen  359 YAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT  438 (565)
T ss_pred             hhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce
Confidence                                                                               4456677888888


Q ss_pred             eeecCCCCccccccccccccccccccCceEecc--------------------CC--cCCccccccccccccceEEcCCC
Q 046301          311 HLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGK--------------------GN--CYGLKELRSLMHLQEKLTISGLE  368 (404)
Q Consensus       311 ~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~--------------------~~--~~~~~~l~~L~~L~~~L~l~~~~  368 (404)
                      .|++++| .+..+|..++.+..||+|++.++..                    ++  ....+.+..|.+|. .|++.+  
T Consensus       439 ~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~-tLDL~n--  514 (565)
T KOG0472|consen  439 FLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT-TLDLQN--  514 (565)
T ss_pred             eeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc-eeccCC--
Confidence            8888877 7888888888888888887765431                    11  11122355555665 566544  


Q ss_pred             CCCCHhHHHhccccCccCCCceEEEecC
Q 046301          369 NVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       369 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                        +++ ..+|..+++|++|+.|.++.|.
T Consensus       515 --Ndl-q~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  515 --NDL-QQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             --Cch-hhCChhhccccceeEEEecCCc
Confidence              223 5567789999999999998775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.90  E-value=1.5e-10  Score=109.96  Aligned_cols=134  Identities=24%  Similarity=0.257  Sum_probs=78.7

Q ss_pred             hccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGK  329 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~  329 (404)
                      +-+++.|+.|++++|.|..+ +.+....+.|+.|||++|+|..++++    .+..|..|++|+|+.| .+..+.++ +..
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~----sf~~L~~Le~LnLs~N-si~~l~e~af~~  363 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG----SFRVLSQLEELNLSHN-SIDHLAEGAFVG  363 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh----HHHHHHHhhhhccccc-chHHHHhhHHHH
Confidence            33556666666666666543 44455556666666666666666654    5666666777777766 55555554 666


Q ss_pred             cccccccCceEeccCCc--CCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301          330 LTSLRTLAKFVVGKGNC--YGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       330 l~~L~~L~~~~~~~~~~--~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      +++|++|++..+...-+  ..-..+..|+.|+ +|.+.+.+ +..++   ...+.++..|+.|+|..|
T Consensus       364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr-kL~l~gNq-lk~I~---krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR-KLRLTGNQ-LKSIP---KRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEecchhhhccchhhh-heeecCce-eeecc---hhhhccCcccceecCCCC
Confidence            67777776543322110  1112355577777 77777643 22222   245777788888888554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=6.8e-10  Score=92.96  Aligned_cols=101  Identities=26%  Similarity=0.351  Sum_probs=21.8

Q ss_pred             cccEEEecCCCccccCcccc-cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc-ccccccc
Q 046301          257 QLRVVSLCGYKIVQLPNDIA-ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLR  334 (404)
Q Consensus       257 ~L~~L~l~~~~~~~lp~~~~-~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~  334 (404)
                      .++.|+|++|.|+.+. .++ .+.+|+.||+++|.|+.++      ++..+++|++|++++| .+..++.++ ..+++|+
T Consensus        20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S--T------T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc------CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence            4455555555554432 233 3445555555555555443      1444555555555555 444444333 2344555


Q ss_pred             ccCceEeccCCcCCccccccccccccceEEcC
Q 046301          335 TLAKFVVGKGNCYGLKELRSLMHLQEKLTISG  366 (404)
Q Consensus       335 ~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~  366 (404)
                      +|.+.++.......+..+..+++|+ .|.+.+
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~-~L~L~~  122 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLR-VLSLEG  122 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT---EEE-TT
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcc-eeeccC
Confidence            5533222221222233334444444 444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.83  E-value=4.7e-10  Score=112.00  Aligned_cols=109  Identities=24%  Similarity=0.294  Sum_probs=71.3

Q ss_pred             ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccc
Q 046301          276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSL  355 (404)
Q Consensus       276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L  355 (404)
                      ...++|+.|+|++|++..+|..    .+.++..|++|++++| ++..+|..+.++..|++|..   ..+....++++..+
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~a---hsN~l~~fPe~~~l  451 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRA---HSNQLLSFPELAQL  451 (1081)
T ss_pred             ccccceeeeeecccccccCCHH----HHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhh---cCCceeechhhhhc
Confidence            3445666666666666666654    4677777888888887 78888887888888888832   22233344577788


Q ss_pred             cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          356 MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       356 ~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                      ++|+ .++++... +..  .+++. ....++|+.|++++|..
T Consensus       452 ~qL~-~lDlS~N~-L~~--~~l~~-~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  452 PQLK-VLDLSCNN-LSE--VTLPE-ALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             Ccce-EEecccch-hhh--hhhhh-hCCCcccceeeccCCcc
Confidence            8888 88886432 211  22222 22237999999998874

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.82  E-value=1.6e-10  Score=105.25  Aligned_cols=130  Identities=26%  Similarity=0.310  Sum_probs=69.8

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT  331 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~  331 (404)
                      +..+..|..|+..+|++..+|++++.+..|..|++.+|.++.+|     +..-+++.|++|+...| .++.+|+.++.|.
T Consensus       133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~-----~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~  206 (565)
T KOG0472|consen  133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALP-----ENHIAMKRLKHLDCNSN-LLETLPPELGGLE  206 (565)
T ss_pred             HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCC-----HHHHHHHHHHhcccchh-hhhcCChhhcchh
Confidence            33344444444444444444444444444555555555444444     44555777777777666 6777777777777


Q ss_pred             cccccCceEeccCCcCCccccc------------------------cccccccceEEcCCCCCCCHhHHHhccccCccCC
Q 046301          332 SLRTLAKFVVGKGNCYGLKELR------------------------SLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKL  387 (404)
Q Consensus       332 ~L~~L~~~~~~~~~~~~~~~l~------------------------~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L  387 (404)
                      +|+-|++..+   ....+++|+                        +|.++. .|++.+.+     ....|..+..+++|
T Consensus       207 ~L~~LyL~~N---ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~-vLDLRdNk-----lke~Pde~clLrsL  277 (565)
T KOG0472|consen  207 SLELLYLRRN---KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLL-VLDLRDNK-----LKEVPDEICLLRSL  277 (565)
T ss_pred             hhHHHHhhhc---ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccce-eeeccccc-----cccCchHHHHhhhh
Confidence            7766644322   222223333                        344444 55554422     23344556667777


Q ss_pred             CceEEEecC
Q 046301          388 EALSLKWVN  396 (404)
Q Consensus       388 ~~L~l~~~~  396 (404)
                      +.|+++.|+
T Consensus       278 ~rLDlSNN~  286 (565)
T KOG0472|consen  278 ERLDLSNND  286 (565)
T ss_pred             hhhcccCCc
Confidence            777777665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.80  E-value=1.7e-09  Score=103.09  Aligned_cols=39  Identities=23%  Similarity=0.192  Sum_probs=18.7

Q ss_pred             ccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          353 RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       353 ~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      -.|+.|+ .|+++.    +.+....+..+..+++|+.|+|++|.
T Consensus       290 fgLt~L~-~L~lS~----NaI~rih~d~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  290 FGLTSLE-QLDLSY----NAIQRIHIDSWSFTQKLKELDLSSNR  328 (873)
T ss_pred             cccchhh-hhccch----hhhheeecchhhhcccceeEeccccc
Confidence            3444444 444443    22334444445555555555555554

>PLN03210 Resistant to P

Probab=98.77  E-value=1.4e-08  Score=110.41  Aligned_cols=145  Identities=26%  Similarity=0.283  Sum_probs=99.9

Q ss_pred             CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-ccccCcccccCCCcceEecCCC-CcccCCCCCCC
Q 046301          223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQLPNDIAELKHLRYLDFSHT-AIEVLPESKLF  300 (404)
Q Consensus       223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~L~~L~~L~l~~~-~l~~lp~~~~p  300 (404)
                      ...+|+.|.+..+.       . ...+..+..+++|++|+++++. +..+| .++.+++|+.|++++| .+..+|..   
T Consensus       609 ~~~~L~~L~L~~s~-------l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s---  676 (1153)
T PLN03210        609 RPENLVKLQMQGSK-------L-EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS---  676 (1153)
T ss_pred             CccCCcEEECcCcc-------c-cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh---
Confidence            45667777665543       1 1123346778999999999876 56676 4888999999999998 46666654   


Q ss_pred             ccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccc-ccccccceEEcCCCCCCCHhHHHhc
Q 046301          301 PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRS-LMHLQEKLTISGLENVNDAEDAKEA  379 (404)
Q Consensus       301 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~-L~~L~~~L~l~~~~~~~~~~~~~~~  379 (404)
                        ++++++|+.|++++|..+..+|..+ ++++|+.|.+..+     ..+..++. ..+|+ .|.+.++. +..    +|.
T Consensus       677 --i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc-----~~L~~~p~~~~nL~-~L~L~~n~-i~~----lP~  742 (1153)
T PLN03210        677 --IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC-----SRLKSFPDISTNIS-WLDLDETA-IEE----FPS  742 (1153)
T ss_pred             --hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC-----CCccccccccCCcC-eeecCCCc-ccc----ccc
Confidence              9999999999999998899999876 7888998865433     22333332 34677 77776543 222    333


Q ss_pred             cccCccCCCceEEEe
Q 046301          380 QLNGKEKLEALSLKW  394 (404)
Q Consensus       380 ~l~~l~~L~~L~l~~  394 (404)
                      .+ .+++|+.|++..
T Consensus       743 ~~-~l~~L~~L~l~~  756 (1153)
T PLN03210        743 NL-RLENLDELILCE  756 (1153)
T ss_pred             cc-cccccccccccc
Confidence            33 467788887754

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.57  E-value=6.4e-09  Score=98.91  Aligned_cols=152  Identities=24%  Similarity=0.291  Sum_probs=117.8

Q ss_pred             cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCc
Q 046301          222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFP  301 (404)
Q Consensus       222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~  301 (404)
                      ..+-.|..+.+..+.        ....+..++++..|.+|+|+.|++..+|..++.|+ |+.|-+++|+++.+|+.    
T Consensus        95 ~~f~~Le~liLy~n~--------~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~----  161 (722)
T KOG0532|consen   95 CAFVSLESLILYHNC--------IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEE----  161 (722)
T ss_pred             HHHHHHHHHHHHhcc--------ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcc----
Confidence            344555555555543        23345668899999999999999999999999876 99999999999988776    


Q ss_pred             cccccccCceeecCCCCccccccccccccccccccCceEeccCC-cCCccccccccccccceEEcCCCCCCCHhHHHhcc
Q 046301          302 DVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGN-CYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQ  380 (404)
Q Consensus       302 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~  380 (404)
                       |+.++.|.+|+.+.| .+..+|..++.+.+|+.|...   .+. ...++++..|+ |. .|+++.++     -..+|..
T Consensus       162 -ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr---Rn~l~~lp~El~~Lp-Li-~lDfScNk-----is~iPv~  229 (722)
T KOG0532|consen  162 -IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR---RNHLEDLPEELCSLP-LI-RLDFSCNK-----ISYLPVD  229 (722)
T ss_pred             -cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh---hhhhhhCCHHHhCCc-ee-eeecccCc-----eeecchh
Confidence             999999999999999 899999999999999999443   222 34667777664 55 67876432     2456778


Q ss_pred             ccCccCCCceEEEecCCC
Q 046301          381 LNGKEKLEALSLKWVNST  398 (404)
Q Consensus       381 l~~l~~L~~L~l~~~~~~  398 (404)
                      +.+|++|+.|-|..|.-.
T Consensus       230 fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhheeeeeccCCCC
Confidence            999999999999888643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.55  E-value=7.2e-09  Score=103.73  Aligned_cols=135  Identities=22%  Similarity=0.341  Sum_probs=102.7

Q ss_pred             hhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc
Q 046301          248 VFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR  326 (404)
Q Consensus       248 ~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~  326 (404)
                      ....+.++++||+|+|++|.+..+|. .+.+|..|+.|+||+|+++.+|..     +.++..|++|...+| .+..+| +
T Consensus       375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t-----va~~~~L~tL~ahsN-~l~~fP-e  447 (1081)
T KOG0618|consen  375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDT-----VANLGRLHTLRAHSN-QLLSFP-E  447 (1081)
T ss_pred             chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHH-----HHhhhhhHHHhhcCC-ceeech-h
Confidence            34457889999999999999999985 477899999999999999988876     999999999999988 899999 7


Q ss_pred             ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301          327 IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       327 ~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      +..++.|+.+++..+..........+++ ++|+ .|++++...... .+   ..+..++++...+++-+
T Consensus       448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~Lk-yLdlSGN~~l~~-d~---~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLK-YLDLSGNTRLVF-DH---KTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhcCcceEEecccchhhhhhhhhhCCC-cccc-eeeccCCccccc-ch---hhhHHhhhhhheecccC
Confidence            9999999999776544333333334444 6888 899988664321 11   22445566666666555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.54  E-value=7.3e-08  Score=66.25  Aligned_cols=58  Identities=29%  Similarity=0.484  Sum_probs=49.5

Q ss_pred             ccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301          256 RQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~  317 (404)
                      ++|++|++++|++..+|+ .+..+++|++|++++|.++.++..    .+..+++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT----TTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCC
Confidence            468899999999998875 677899999999999999887754    5889999999999888

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.48  E-value=8.4e-08  Score=99.87  Aligned_cols=158  Identities=23%  Similarity=0.279  Sum_probs=108.7

Q ss_pred             ccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC--ccccCcc-cccCCCcceEecCCC-CcccC
Q 046301          219 EGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK--IVQLPND-IAELKHLRYLDFSHT-AIEVL  294 (404)
Q Consensus       219 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~~-~~~L~~L~~L~l~~~-~l~~l  294 (404)
                      +...+....|...+..+.-        ..... -...+.|++|-+.+|.  +..++.. +..++.|++|||++| .+..+
T Consensus       517 ~~~~~~~~~rr~s~~~~~~--------~~~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L  587 (889)
T KOG4658|consen  517 PQVKSWNSVRRMSLMNNKI--------EHIAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL  587 (889)
T ss_pred             ccccchhheeEEEEeccch--------hhccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence            3344455666666655441        01111 1233479999999886  6666654 777999999999988 57777


Q ss_pred             CCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHh
Q 046301          295 PESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAE  374 (404)
Q Consensus       295 p~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~  374 (404)
                      |+.     |++|.+||+|+++++ .+..+|.++++|.+|.+|++..++...+. ..-+..|++|+ .|.+..-.  ....
T Consensus       588 P~~-----I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr-~L~l~~s~--~~~~  657 (889)
T KOG4658|consen  588 PSS-----IGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLR-VLRLPRSA--LSND  657 (889)
T ss_pred             ChH-----HhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccc-cchhhhccccc-EEEeeccc--cccc
Confidence            765     999999999999999 89999999999999999987655443211 22334478888 77776533  1233


Q ss_pred             HHHhccccCccCCCceEEEec
Q 046301          375 DAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       375 ~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      ......+.++++|+.|+.+..
T Consensus       658 ~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  658 KLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             hhhHHhhhcccchhhheeecc
Confidence            444455778888888887543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.47  E-value=1.8e-07  Score=78.38  Aligned_cols=125  Identities=26%  Similarity=0.268  Sum_probs=41.7

Q ss_pred             CcceEEEEeccCcccccccccc-CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccc-cC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLH-KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIA-EL  278 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~-~L  278 (404)
                      ..+.|.+..+.+..+.   .+. .+.+|+.|.+..+.       ...+  +.++.++.|+.|++++|.++.+++.+. .+
T Consensus        20 ~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~Ls~N~-------I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l   87 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE---NLGATLDKLEVLDLSNNQ-------ITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNL   87 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS---------S----TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred             cccccccccccccccc---chhhhhcCCCEEECCCCC-------Cccc--cCccChhhhhhcccCCCCCCccccchHHhC
Confidence            3455666665554433   232 35666777766655       1111  235666777777777777776665543 46


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc----cccccccccccCceEe
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL----RIGKLTSLRTLAKFVV  341 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~~~~~  341 (404)
                      ++|+.|++++|+|..+-.-   ..+..+++|+.|++.+| .+.+.+.    -+..+++|+.|+...+
T Consensus        88 p~L~~L~L~~N~I~~l~~l---~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNEL---EPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             TT--EEE-TTS---SCCCC---GGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             CcCCEEECcCCcCCChHHh---HHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEc
Confidence            7777777777776655321   23566777777777776 3444332    2556666777755443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.46  E-value=3.9e-08  Score=89.75  Aligned_cols=84  Identities=17%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             ccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcc--ccccccccccceEEcCCCCCCCHhHHHhc
Q 046301          303 VGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLK--ELRSLMHLQEKLTISGLENVNDAEDAKEA  379 (404)
Q Consensus       303 ~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~--~l~~L~~L~~~L~l~~~~~~~~~~~~~~~  379 (404)
                      |..|++|++|++++| ++.++-++ |..+..++.|.+-   .+....++  .|..|..|+ .|++++.+    +....|.
T Consensus       270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~---~N~l~~v~~~~f~~ls~L~-tL~L~~N~----it~~~~~  340 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLT---RNKLEFVSSGMFQGLSGLK-TLSLYDNQ----ITTVAPG  340 (498)
T ss_pred             HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcC---cchHHHHHHHhhhccccce-eeeecCCe----eEEEecc
Confidence            667888888888888 67777544 8888888888443   22222222  367778888 88887743    4455566


Q ss_pred             cccCccCCCceEEEec
Q 046301          380 QLNGKEKLEALSLKWV  395 (404)
Q Consensus       380 ~l~~l~~L~~L~l~~~  395 (404)
                      .+..+.+|.+|+|-.|
T Consensus       341 aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSN  356 (498)
T ss_pred             cccccceeeeeehccC
Confidence            7778888888887544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.41  E-value=7.4e-07  Score=91.46  Aligned_cols=106  Identities=19%  Similarity=0.318  Sum_probs=60.3

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAE  277 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~  277 (404)
                      ++..++.+.+..+.+..+..  .  ..++|+.|.+..+.       ...++. .+.  ..|+.|++++|.+..+|..+. 
T Consensus       197 Ip~~L~~L~Ls~N~LtsLP~--~--l~~nL~~L~Ls~N~-------LtsLP~-~l~--~~L~~L~Ls~N~L~~LP~~l~-  261 (754)
T PRK15370        197 IPEQITTLILDNNELKSLPE--N--LQGNIKTLYANSNQ-------LTSIPA-TLP--DTIQEMELSINRITELPERLP-  261 (754)
T ss_pred             cccCCcEEEecCCCCCcCCh--h--hccCCCEEECCCCc-------cccCCh-hhh--ccccEEECcCCccCcCChhHh-
Confidence            34567777777766554321  1  12467777776554       112221 121  356777777777777766654 


Q ss_pred             CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc
Q 046301          278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI  327 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~  327 (404)
                       .+|++|++++|++..+|..     +.  ++|++|++++| .+..+|..+
T Consensus       262 -s~L~~L~Ls~N~L~~LP~~-----l~--~sL~~L~Ls~N-~Lt~LP~~l  302 (754)
T PRK15370        262 -SALQSLDLFHNKISCLPEN-----LP--EELRYLSVYDN-SIRTLPAHL  302 (754)
T ss_pred             -CCCCEEECcCCccCccccc-----cC--CCCcEEECCCC-ccccCcccc
Confidence             4677777777777666543     32  35666677666 555565443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.40  E-value=5.1e-08  Score=86.02  Aligned_cols=132  Identities=25%  Similarity=0.265  Sum_probs=96.7

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT  331 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~  331 (404)
                      +.-+..|+.|||++|.|+.+-+++.-++.++.|++|+|+|..+-      .+..|++|++||+++| .+.++--.--+|-
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLG  352 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGN-LLAECVGWHLKLG  352 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh------hhhhcccceEeecccc-hhHhhhhhHhhhc
Confidence            33467799999999999999999999999999999999998654      2888999999999999 6666643334566


Q ss_pred             cccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          332 SLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       332 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                      ++++|.+.   .+....++.+++|-+|. .|++.+++ +..+ +.. ..+++++.|+.|.|..|.-
T Consensus       353 NIKtL~La---~N~iE~LSGL~KLYSLv-nLDl~~N~-Ie~l-deV-~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  353 NIKTLKLA---QNKIETLSGLRKLYSLV-NLDLSSNQ-IEEL-DEV-NHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             CEeeeehh---hhhHhhhhhhHhhhhhe-eccccccc-hhhH-HHh-cccccccHHHHHhhcCCCc
Confidence            67777432   22334556667777777 77776532 1222 222 3589999999999977753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.38  E-value=2.1e-06  Score=87.87  Aligned_cols=22  Identities=9%  Similarity=-0.096  Sum_probs=16.4

Q ss_pred             HhccccCccCCCceEEEecCCC
Q 046301          377 KEAQLNGKEKLEALSLKWVNST  398 (404)
Q Consensus       377 ~~~~l~~l~~L~~L~l~~~~~~  398 (404)
                      +|..+.++.+|+.|+|+.|.-+
T Consensus       437 LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        437 LPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             cChHHhhccCCCeEECCCCCCC
Confidence            4556778888999999877643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.36  E-value=7.8e-08  Score=89.89  Aligned_cols=169  Identities=18%  Similarity=0.099  Sum_probs=97.3

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccC---ccccEEEecCCCcc-----ccCcccccC-CCcceEecCCCC
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRL---RQLRVVSLCGYKIV-----QLPNDIAEL-KHLRYLDFSHTA  290 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~-----~lp~~~~~L-~~L~~L~l~~~~  290 (404)
                      .+.++++|+.|.+..+.-       .......+..+   ++|++|++++|.+.     .+...+..+ ++|+.|++++|.
T Consensus        76 ~l~~~~~L~~L~l~~~~~-------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116          76 GLTKGCGLQELDLSDNAL-------GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             HHHhcCceeEEEccCCCC-------ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            445677888888866541       11122223333   44888888888775     233455666 788899998888


Q ss_pred             cccCCCCCCCccccccccCceeecCCCCccc-----cccccccccccccccCceEeccCCc---CCccccccccccccce
Q 046301          291 IEVLPESKLFPDVGNLVNLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKFVVGKGNC---YGLKELRSLMHLQEKL  362 (404)
Q Consensus       291 l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~~~~~~~~~~---~~~~~l~~L~~L~~~L  362 (404)
                      +..-....++..+..+++|++|++++|. +.     .++..+..+++|+.|++..+.....   .....+..+++|+ .|
T Consensus       149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~-~L  226 (319)
T cd00116         149 LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE-VL  226 (319)
T ss_pred             CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC-EE
Confidence            7631111223346667789999998883 33     3444455566888886654432210   1122355667788 88


Q ss_pred             EEcCCCCCCCHhHHHh-ccccCccCCCceEEEecCC
Q 046301          363 TISGLENVNDAEDAKE-AQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       363 ~l~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  397 (404)
                      +++++.-.......+. ........|+.|++++|.-
T Consensus       227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence            8887542110111111 1111347889999987753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.35  E-value=1.4e-07  Score=88.08  Aligned_cols=166  Identities=19%  Similarity=0.131  Sum_probs=81.1

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccC-ccccEEEecCCCcc-----ccCcccccCCCcceEecCCCCcccCCCCC
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-RQLRVVSLCGYKIV-----QLPNDIAELKHLRYLDFSHTAIEVLPESK  298 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~-----~lp~~~~~L~~L~~L~l~~~~l~~lp~~~  298 (404)
                      +.|+.|.+..+.-.   ..........+..+ ++|+.|++++|.+.     .++..+..+.+|+.|++++|.+..-....
T Consensus       108 ~~L~~L~ls~~~~~---~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  184 (319)
T cd00116         108 SSLQELKLNNNGLG---DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA  184 (319)
T ss_pred             CcccEEEeeCCccc---hHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence            44666666654310   00111222344555 67777777777765     23444555666777777777665210001


Q ss_pred             CCccccccccCceeecCCCCccc-----cccccccccccccccCceEeccCCcCCccccc-----cccccccceEEcCCC
Q 046301          299 LFPDVGNLVNLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKFVVGKGNCYGLKELR-----SLMHLQEKLTISGLE  368 (404)
Q Consensus       299 ~p~~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~-----~L~~L~~~L~l~~~~  368 (404)
                      ++..+..+++|++|++++| .+.     .++..+..+++|++|++..+.... ..+..+.     ..+.|+ .|.+.++.
T Consensus       185 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~~~~~~~~~L~-~L~l~~n~  261 (319)
T cd00116         185 LAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTD-AGAAALASALLSPNISLL-TLSLSCND  261 (319)
T ss_pred             HHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCch-HHHHHHHHHHhccCCCce-EEEccCCC
Confidence            2222444557777777766 322     233345556667776554332211 0111111     124566 66666654


Q ss_pred             CCCCHhHHHhccccCccCCCceEEEecC
Q 046301          369 NVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       369 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      -...-...+...+..+++|+.|+++.|.
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            2211223333344555667777776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.35  E-value=8.9e-07  Score=90.91  Aligned_cols=37  Identities=8%  Similarity=0.006  Sum_probs=21.5

Q ss_pred             cccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          358 LQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       358 L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      |+ .|.++++. +..+++.++.....+.++..|++.+|.
T Consensus       390 L~-~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        390 LQ-IMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HH-HHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence            44 45555432 234455555555566777888887765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=6e-07  Score=56.81  Aligned_cols=40  Identities=25%  Similarity=0.500  Sum_probs=31.1

Q ss_pred             ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCC
Q 046301          256 RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLP  295 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp  295 (404)
                      ++|++|++++|+|+.+|+.+++|++|++|++++|+|+.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            4688888888888888888888888888888888887654

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.25  E-value=1.1e-07  Score=86.85  Aligned_cols=129  Identities=23%  Similarity=0.289  Sum_probs=87.7

Q ss_pred             ccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccc
Q 046301          258 LRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRT  335 (404)
Q Consensus       258 L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~  335 (404)
                      -..++|..|+|+.+|+ .|+.+++||.||||+|.|+.+-+    ..|..+++|..|-+-+++++.++|.+ |++|.+|+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p----~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP----DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcCh----HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            4667888888888875 46778888888888888886643    36888888888877775588888876 888888888


Q ss_pred             cCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          336 LAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       336 L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      |.+..+ ...|..-..|..|++++ .|.+++.    .+...-...+..+..++.+.+.-|.
T Consensus       145 LllNan-~i~Cir~~al~dL~~l~-lLslyDn----~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  145 LLLNAN-HINCIRQDALRDLPSLS-LLSLYDN----KIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HhcChh-hhcchhHHHHHHhhhcc-hhcccch----hhhhhccccccchhccchHhhhcCc
Confidence            744322 22244445577777777 6777652    2223233367777777777765543

>PLN03150 hypothetical protein; Provisional

Probab=98.22  E-value=1.7e-06  Score=88.05  Aligned_cols=79  Identities=29%  Similarity=0.440  Sum_probs=50.5

Q ss_pred             ccEEEecCCCcc-ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccccccccc
Q 046301          258 LRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL  336 (404)
Q Consensus       258 L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L  336 (404)
                      ++.|+|++|.+. .+|..++.|++|+.|+|++|.+..    .+|..++.+++|+.|++++|.....+|..+++|++|+.|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            566667766665 566667777777777777776651    223346677777777777764445666667777777776


Q ss_pred             CceE
Q 046301          337 AKFV  340 (404)
Q Consensus       337 ~~~~  340 (404)
                      ++..
T Consensus       496 ~Ls~  499 (623)
T PLN03150        496 NLNG  499 (623)
T ss_pred             ECcC
Confidence            5543

>PLN03150 hypothetical protein; Provisional

Probab=98.20  E-value=1.9e-06  Score=87.59  Aligned_cols=99  Identities=20%  Similarity=0.331  Sum_probs=77.6

Q ss_pred             ccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccccCCCcceEecCCCCcccCCCCCCCccccc
Q 046301          227 LRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGN  305 (404)
Q Consensus       227 L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~  305 (404)
                      +..|.+..+.       ..+..+..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+..    .+|..+++
T Consensus       420 v~~L~L~~n~-------L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg----~iP~~l~~  488 (623)
T PLN03150        420 IDGLGLDNQG-------LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG----SIPESLGQ  488 (623)
T ss_pred             EEEEECCCCC-------ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC----CCchHHhc
Confidence            4555554443       23445566889999999999999997 889999999999999999999873    33445999


Q ss_pred             cccCceeecCCCCcccccccccccc-cccccc
Q 046301          306 LVNLRHLKDSHSNLLEEMPLRIGKL-TSLRTL  336 (404)
Q Consensus       306 l~~L~~L~l~~~~~l~~lp~~~~~l-~~L~~L  336 (404)
                      +++|++|++++|.....+|..++.+ .++..+
T Consensus       489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            9999999999997777999887654 234444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.17  E-value=2.2e-06  Score=58.78  Aligned_cols=60  Identities=20%  Similarity=0.318  Sum_probs=50.4

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAI  291 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l  291 (404)
                      ++|+.|.+..+.       ...++...|.++++|++|++++|.+..+|+ .+..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~-------l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNK-------LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSST-------ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCC-------CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            467778777765       456667789999999999999999998764 679999999999999975

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.09  E-value=1.8e-06  Score=83.33  Aligned_cols=130  Identities=22%  Similarity=0.235  Sum_probs=64.4

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT  331 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~  331 (404)
                      +..+++|+.|++++|++..+|...+.+++|+.|++++|.+..+|..     +..+..|+++.+++| .....|..+.+++
T Consensus       159 ~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-----~~~~~~L~~l~~~~N-~~~~~~~~~~~~~  232 (394)
T COG4886         159 LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE-----IELLSALEELDLSNN-SIIELLSSLSNLK  232 (394)
T ss_pred             hhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchh-----hhhhhhhhhhhhcCC-cceecchhhhhcc
Confidence            4555555555555555555555554555555555555555554432     334444555555555 3444444455555


Q ss_pred             cccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          332 SLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       332 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      ++..|.+..+..  ...+..+..+..++ .|.++++.. ..    ++. +....+|+.|+++.+.
T Consensus       233 ~l~~l~l~~n~~--~~~~~~~~~l~~l~-~L~~s~n~i-~~----i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         233 NLSGLELSNNKL--EDLPESIGNLSNLE-TLDLSNNQI-SS----ISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             cccccccCCcee--eeccchhccccccc-eeccccccc-cc----ccc-ccccCccCEEeccCcc
Confidence            555553211111  01133445555555 555554321 11    111 5566777777776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=1.2e-06  Score=81.23  Aligned_cols=68  Identities=13%  Similarity=0.114  Sum_probs=40.3

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc--ccccCCCcceEecCCCCcc
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN--DIAELKHLRYLDFSHTAIE  292 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~~~~L~~L~~L~l~~~~l~  292 (404)
                      -.+.+++++.|.+..+-     .-.-....++...+++|+.|+++.|.+.....  .-..+++|+.|.|+.|+++
T Consensus       141 ~~k~~~~v~~LdLS~NL-----~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls  210 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNL-----FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS  210 (505)
T ss_pred             hhhhCCcceeecchhhh-----HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC
Confidence            34567777777776654     12223344556677777777777777553221  1234667777777777665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.02  E-value=2.2e-07  Score=88.74  Aligned_cols=133  Identities=23%  Similarity=0.244  Sum_probs=105.3

Q ss_pred             hhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc
Q 046301          248 VFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI  327 (404)
Q Consensus       248 ~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~  327 (404)
                      ++..++.+-.|..+.|+.|.+..+|..+++|..|.+||++.|++..+|..     +..|+ |+.|-++.| +++.+|+.+
T Consensus        90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-----lC~lp-Lkvli~sNN-kl~~lp~~i  162 (722)
T KOG0532|consen   90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-----LCDLP-LKVLIVSNN-KLTSLPEEI  162 (722)
T ss_pred             CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-----hhcCc-ceeEEEecC-ccccCCccc
Confidence            34456777788999999999999999999999999999999999988876     88887 999989887 899999999


Q ss_pred             cccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          328 GKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       328 ~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +.+..|..|+...+..  ...+.+++.|.+|+ .|.+....    + .-+|..+..+ .|..|++++|+
T Consensus       163 g~~~tl~~ld~s~nei--~slpsql~~l~slr-~l~vrRn~----l-~~lp~El~~L-pLi~lDfScNk  222 (722)
T KOG0532|consen  163 GLLPTLAHLDVSKNEI--QSLPSQLGYLTSLR-DLNVRRNH----L-EDLPEELCSL-PLIRLDFSCNK  222 (722)
T ss_pred             ccchhHHHhhhhhhhh--hhchHHhhhHHHHH-HHHHhhhh----h-hhCCHHHhCC-ceeeeecccCc
Confidence            9888899986543322  34567888999998 77776522    2 2334445533 68899999887

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=1.7e-06  Score=80.21  Aligned_cols=86  Identities=21%  Similarity=0.230  Sum_probs=45.6

Q ss_pred             CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-ccccCcccccCCCcceEecCCCCcccCCCCCCCc
Q 046301          223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFP  301 (404)
Q Consensus       223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~  301 (404)
                      .+++|+.|.+..++      .+..........+++|.+|+|++|. +..--.....+..|+.|||++|++-..+..   .
T Consensus       195 ~l~~lK~L~l~~CG------ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~  265 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCG------LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---Y  265 (505)
T ss_pred             hhhhhheEEeccCC------CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---c
Confidence            45566666666655      3334444455566666666666663 221112223345566666666665544422   2


Q ss_pred             cccccccCceeecCCC
Q 046301          302 DVGNLVNLRHLKDSHS  317 (404)
Q Consensus       302 ~~~~l~~L~~L~l~~~  317 (404)
                      .++.++.|+.|+++.|
T Consensus       266 ~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  266 KVGTLPGLNQLNLSST  281 (505)
T ss_pred             ccccccchhhhhcccc
Confidence            2556666666666655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.96  E-value=3.1e-05  Score=79.53  Aligned_cols=38  Identities=24%  Similarity=0.299  Sum_probs=24.2

Q ss_pred             ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCC
Q 046301          256 RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPE  296 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~  296 (404)
                      ..|+.|++++|.++.+|..   +++|+.|++++|.++.+|.
T Consensus       282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~  319 (788)
T PRK15387        282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA  319 (788)
T ss_pred             hhcCEEECcCCcccccccc---ccccceeECCCCccccCCC
Confidence            3456666666666666652   3567777777777776653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.94  E-value=4.7e-06  Score=84.84  Aligned_cols=58  Identities=29%  Similarity=0.338  Sum_probs=29.9

Q ss_pred             hccCccccEEEecCCCcc--ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecC
Q 046301          252 VPRLRQLRVVSLCGYKIV--QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDS  315 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~  315 (404)
                      -.-+|.|+.|.+.+-.+.  ++-.-..++++|+.||+|+++++.+.      ++++|++|+.|.+.
T Consensus       144 g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~------GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  144 GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS------GISRLKNLQVLSMR  203 (699)
T ss_pred             hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH------HHhccccHHHHhcc
Confidence            334555555555554432  22333445555666666666555441      25555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.93  E-value=1.4e-06  Score=77.13  Aligned_cols=81  Identities=27%  Similarity=0.371  Sum_probs=45.2

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc--ccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP--LRIGK  329 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp--~~~~~  329 (404)
                      +..+++|..|||++|.+..+-..-.+|-|.+.|.|.+|.|+.+.      +++.|.+|..||+++| .+.++.  .+||+
T Consensus       325 La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS------GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~  397 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS------GLRKLYSLVNLDLSSN-QIEELDEVNHIGN  397 (490)
T ss_pred             hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh------hhHhhhhheecccccc-chhhHHHhccccc
Confidence            44455555555555555554444445555555555555555443      3666666666666666 444443  24666


Q ss_pred             cccccccCce
Q 046301          330 LTSLRTLAKF  339 (404)
Q Consensus       330 l~~L~~L~~~  339 (404)
                      |+.|++|.+.
T Consensus       398 LPCLE~l~L~  407 (490)
T KOG1259|consen  398 LPCLETLRLT  407 (490)
T ss_pred             ccHHHHHhhc
Confidence            6666666443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.90  E-value=7.4e-06  Score=79.06  Aligned_cols=153  Identities=24%  Similarity=0.273  Sum_probs=99.7

Q ss_pred             cCCCCccEEEecccCccccccccchhhhhhhccC-ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCC
Q 046301          222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLF  300 (404)
Q Consensus       222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p  300 (404)
                      ...+.+..+.+..+.       ...+ +.....+ .+|+.|++++|.+..+|..+..+++|+.|++++|.+..+|..   
T Consensus       113 ~~~~~l~~L~l~~n~-------i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~---  181 (394)
T COG4886         113 LELTNLTSLDLDNNN-------ITDI-PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL---  181 (394)
T ss_pred             hcccceeEEecCCcc-------cccC-ccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh---
Confidence            334556666665544       1111 2223344 378888888888888888888888888888888888877754   


Q ss_pred             ccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcc
Q 046301          301 PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQ  380 (404)
Q Consensus       301 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~  380 (404)
                        .+.+++|+.|++++| .+..+|..++.+..|++|.+..+.  ....+..+.++.++. .+.+.+...     ...+..
T Consensus       182 --~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~--~~~~~~~~~~~~~l~-~l~l~~n~~-----~~~~~~  250 (394)
T COG4886         182 --LSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS--IIELLSSLSNLKNLS-GLELSNNKL-----EDLPES  250 (394)
T ss_pred             --hhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc--ceecchhhhhccccc-ccccCCcee-----eeccch
Confidence              558888888888888 788888776666678888443221  233445566666666 555433221     111455


Q ss_pred             ccCccCCCceEEEecC
Q 046301          381 LNGKEKLEALSLKWVN  396 (404)
Q Consensus       381 l~~l~~L~~L~l~~~~  396 (404)
                      +..+.+|+.|+++.|.
T Consensus       251 ~~~l~~l~~L~~s~n~  266 (394)
T COG4886         251 IGNLSNLETLDLSNNQ  266 (394)
T ss_pred             hccccccceecccccc
Confidence            6777778888887665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=9.1e-06  Score=51.35  Aligned_cols=40  Identities=35%  Similarity=0.503  Sum_probs=32.0

Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP  324 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp  324 (404)
                      ++|++|++++|+|+.+|..     +++|++|++|++++| .+..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~-----l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPE-----LSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGH-----GTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcccCch-----HhCCCCCCEEEecCC-CCCCCc
Confidence            4789999999999977654     999999999999999 666665

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.43  E-value=8.7e-06  Score=80.24  Aligned_cols=76  Identities=24%  Similarity=0.313  Sum_probs=32.8

Q ss_pred             CccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccccccc
Q 046301          255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR  334 (404)
Q Consensus       255 l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~  334 (404)
                      ++.|+.|+|+.|++...- .+..|++|++|||++|.+..+|.-    +...+. |+.|.+.+| .+..+- +|.+|.+|+
T Consensus       186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l----~~~gc~-L~~L~lrnN-~l~tL~-gie~LksL~  257 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQL----SMVGCK-LQLLNLRNN-ALTTLR-GIENLKSLY  257 (1096)
T ss_pred             HHHhhhhccchhhhhhhH-HHHhcccccccccccchhcccccc----chhhhh-heeeeeccc-HHHhhh-hHHhhhhhh
Confidence            344445555555444332 344444455555555544444421    111112 444444444 344442 344444444


Q ss_pred             ccCc
Q 046301          335 TLAK  338 (404)
Q Consensus       335 ~L~~  338 (404)
                      .|++
T Consensus       258 ~LDl  261 (1096)
T KOG1859|consen  258 GLDL  261 (1096)
T ss_pred             ccch
Confidence            4443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.41  E-value=6e-06  Score=81.34  Aligned_cols=127  Identities=20%  Similarity=0.211  Sum_probs=91.5

Q ss_pred             CccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccc
Q 046301          255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL  333 (404)
Q Consensus       255 l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L  333 (404)
                      ...|.+.++++|.+..+-.++.-++.|+.|||++|++....      .+..++.|++|||++| .+..+|.- .... .|
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L  234 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KL  234 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccc-hhccccccchhhh-hh
Confidence            34577888899998888888999999999999999988654      3889999999999999 78888853 2222 47


Q ss_pred             cccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +.|.+.   ++.-..+..+.+|.+|+ .|+++.+= +..+.++.|  +..+..|..|+|..|.
T Consensus       235 ~~L~lr---nN~l~tL~gie~LksL~-~LDlsyNl-l~~hseL~p--LwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  235 QLLNLR---NNALTTLRGIENLKSLY-GLDLSYNL-LSEHSELEP--LWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             eeeeec---ccHHHhhhhHHhhhhhh-ccchhHhh-hhcchhhhH--HHHHHHHHHHhhcCCc
Confidence            777443   33233455667778888 78876521 223334444  4556788888888765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=5.6e-05  Score=77.14  Aligned_cols=108  Identities=24%  Similarity=0.291  Sum_probs=73.2

Q ss_pred             CCcceEEEEeccCccccccccc-cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGL-HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL  278 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L  278 (404)
                      .++++|.+.....-...++..+ .-+|.|++|.+.+..      .........+.++++|+.||+++++++.+ .+++.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence            4567777655432222222222 347889999887755      22333455677889999999999998877 788899


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~  317 (404)
                      ++|+.|.+++-.++.-..   -..+.+|++|+.||+|..
T Consensus       195 knLq~L~mrnLe~e~~~~---l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQD---LIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             ccHHHHhccCCCCCchhh---HHHHhcccCCCeeecccc
Confidence            999998888766653221   124778899999999876

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.40  E-value=0.00042  Score=65.63  Aligned_cols=65  Identities=18%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCC-CcccCCCCCCCccccccccCceeecCCCCcccccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHT-AIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR  326 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~-~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~  326 (404)
                      +..+.+++.|++++|.++.+|. +  ..+|+.|++++| .++.+|..     +.  ++|++|++++|..+..+|.+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-----LP--~nLe~L~Ls~Cs~L~sLP~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGS-----IP--EGLEKLTVCHCPEISGLPES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCch-----hh--hhhhheEccCcccccccccc
Confidence            3344566666666666666651 1  124666666654 35544432     21  35566666665555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.22  E-value=0.00014  Score=70.71  Aligned_cols=100  Identities=23%  Similarity=0.268  Sum_probs=61.4

Q ss_pred             ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCC
Q 046301          221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLF  300 (404)
Q Consensus       221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p  300 (404)
                      +..+..+..+.+..+.-        ......+..+.+|++|++++|.|+.+.. +..+..|+.|++++|.|+.+..    
T Consensus        91 l~~~~~l~~l~l~~n~i--------~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~----  157 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKI--------EKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISG----  157 (414)
T ss_pred             cccccceeeeeccccch--------hhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccC----
Confidence            44555666666655441        1111115567777777777777776543 5566667777777777776653    


Q ss_pred             ccccccccCceeecCCCCcccccccc-cccccccccc
Q 046301          301 PDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTL  336 (404)
Q Consensus       301 ~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L  336 (404)
                        +..+++|+.+++++| .+..+... +..+.+|+.+
T Consensus       158 --~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l  191 (414)
T KOG0531|consen  158 --LESLKSLKLLDLSYN-RIVDIENDELSELISLEEL  191 (414)
T ss_pred             --CccchhhhcccCCcc-hhhhhhhhhhhhccchHHH
Confidence              555777777777777 55555432 3556666666

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.11  E-value=0.00015  Score=70.50  Aligned_cols=105  Identities=26%  Similarity=0.404  Sum_probs=79.9

Q ss_pred             hhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccc
Q 046301          250 HVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGK  329 (404)
Q Consensus       250 ~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~  329 (404)
                      ..+..+.+|..|++.+|.|..+...+..+++|++|++++|.|..+..      +..++.|+.|++.+| .+..++ ++..
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N-~i~~~~-~~~~  160 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGN-LISDIS-GLES  160 (414)
T ss_pred             cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc------hhhccchhhheeccC-cchhcc-CCcc
Confidence            34778899999999999999877778889999999999999998763      888888999999999 777775 4666


Q ss_pred             cccccccCceEeccCCcCCccc--cccccccccceEEcC
Q 046301          330 LTSLRTLAKFVVGKGNCYGLKE--LRSLMHLQEKLTISG  366 (404)
Q Consensus       330 l~~L~~L~~~~~~~~~~~~~~~--l~~L~~L~~~L~l~~  366 (404)
                      +.+|+.+++.++   ....++.  +..+.++. .+.+.+
T Consensus       161 l~~L~~l~l~~n---~i~~ie~~~~~~~~~l~-~l~l~~  195 (414)
T KOG0531|consen  161 LKSLKLLDLSYN---RIVDIENDELSELISLE-ELDLGG  195 (414)
T ss_pred             chhhhcccCCcc---hhhhhhhhhhhhccchH-HHhccC
Confidence            888888855433   2333334  45666666 666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.10  E-value=8.1e-05  Score=58.61  Aligned_cols=67  Identities=18%  Similarity=0.379  Sum_probs=38.9

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP  324 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp  324 (404)
                      -..++.++.|++++|.+.++|..+..++.|+.|+++.|.+...|..     |..|.+|-.|+..+| ....+|
T Consensus        73 t~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~v-----i~~L~~l~~Lds~~n-a~~eid  139 (177)
T KOG4579|consen   73 TIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRV-----IAPLIKLDMLDSPEN-ARAEID  139 (177)
T ss_pred             hhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHH-----HHHHHhHHHhcCCCC-ccccCc
Confidence            3344456666666666666666666666666666666666554443     555666666665555 444454

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.07  E-value=8.7e-05  Score=58.45  Aligned_cols=80  Identities=21%  Similarity=0.294  Sum_probs=67.8

Q ss_pred             hccCccccEEEecCCCccccCcccccC-CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAEL-KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKL  330 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L-~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l  330 (404)
                      +.....|...++++|.+..+|+.+... +-+..|++++|.|..+|..     +..++.|+.|+++.| .+...|.-|..|
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-----~Aam~aLr~lNl~~N-~l~~~p~vi~~L  122 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-----LAAMPALRSLNLRFN-PLNAEPRVIAPL  122 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-----HhhhHHhhhcccccC-ccccchHHHHHH
Confidence            455677888899999999999888754 4799999999999988875     999999999999998 777888888878


Q ss_pred             ccccccC
Q 046301          331 TSLRTLA  337 (404)
Q Consensus       331 ~~L~~L~  337 (404)
                      .+|-.|+
T Consensus       123 ~~l~~Ld  129 (177)
T KOG4579|consen  123 IKLDMLD  129 (177)
T ss_pred             HhHHHhc
Confidence            8888884

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.07  E-value=0.00024  Score=62.12  Aligned_cols=82  Identities=20%  Similarity=0.269  Sum_probs=44.3

Q ss_pred             ccCccccEEEecCCCccccCcccccCCCcceEecCCC--CcccCCCCCCCccccccccCceeecCCCCcccccccc---c
Q 046301          253 PRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHT--AIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR---I  327 (404)
Q Consensus       253 ~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~--~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~---~  327 (404)
                      ..+..|..|++.+..++.+ ..+..|++|++|+++.|  ++..    .++.....+++|++|++++| ++.. +.+   +
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~----~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl  112 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSG----GLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPL  112 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccc----cceehhhhCCceeEEeecCC-cccc-ccccchh
Confidence            3445555555555544422 22445778888888887  4331    12222555688888888887 4443 222   3


Q ss_pred             cccccccccCceEe
Q 046301          328 GKLTSLRTLAKFVV  341 (404)
Q Consensus       328 ~~l~~L~~L~~~~~  341 (404)
                      .++.+|..|+++++
T Consensus       113 ~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen  113 KELENLKSLDLFNC  126 (260)
T ss_pred             hhhcchhhhhcccC
Confidence            44444555555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.66  E-value=0.0013  Score=55.35  Aligned_cols=104  Identities=19%  Similarity=0.244  Sum_probs=70.3

Q ss_pred             ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccc-cccCceeecCCCCccccccc--ccccccc
Q 046301          256 RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGN-LVNLRHLKDSHSNLLEEMPL--RIGKLTS  332 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~-l~~L~~L~l~~~~~l~~lp~--~~~~l~~  332 (404)
                      .+.-.+||++|.+..++ .+..++.|.+|.+.+|+|..+-+.     +.. +++|+.|.+.+| .+.++-+  .+..+++
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~-----L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPD-----LDTFLPNLKTLILTNN-SIQELGDLDPLASCPK  114 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcceeeccc-----hhhhccccceEEecCc-chhhhhhcchhccCCc
Confidence            35678899999876543 356788899999999999977654     655 477999999988 5555532  2556667


Q ss_pred             ccccCceEeccC--CcCCccccccccccccceEEcCC
Q 046301          333 LRTLAKFVVGKG--NCYGLKELRSLMHLQEKLTISGL  367 (404)
Q Consensus       333 L~~L~~~~~~~~--~~~~~~~l~~L~~L~~~L~l~~~  367 (404)
                      |++|.+..+...  .....--+..+++|+ .|+..+.
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~-~LDF~kV  150 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLR-TLDFQKV  150 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcce-Eeehhhh
Confidence            777755433322  123344567777777 7777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.55  E-value=0.0013  Score=57.58  Aligned_cols=87  Identities=23%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             hccCccccEEEecCC--Ccc-ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc---
Q 046301          252 VPRLRQLRVVSLCGY--KIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL---  325 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~--~~~-~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~---  325 (404)
                      |+.|++|+.|.++.|  .+. .++.-...+++|++|++++|+|+.+..  + +.+..+.+|..|++..|. ...+-.   
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst--l-~pl~~l~nL~~Ldl~n~~-~~~l~dyre  136 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST--L-RPLKELENLKSLDLFNCS-VTNLDDYRE  136 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc--c-chhhhhcchhhhhcccCC-ccccccHHH
Confidence            566677777777777  333 455555556777777777777664221  1 125567777777777773 322321   


Q ss_pred             -cccccccccccCceEec
Q 046301          326 -RIGKLTSLRTLAKFVVG  342 (404)
Q Consensus       326 -~~~~l~~L~~L~~~~~~  342 (404)
                       .+.-+++|.+|+.+.+.
T Consensus       137 ~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  137 KVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             HHHHHhhhhccccccccC
Confidence             14556777777776654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.45  E-value=0.0031  Score=53.23  Aligned_cols=89  Identities=25%  Similarity=0.267  Sum_probs=69.1

Q ss_pred             hhhccCccccEEEecCCCccccCccccc-CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc---
Q 046301          250 HVVPRLRQLRVVSLCGYKIVQLPNDIAE-LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL---  325 (404)
Q Consensus       250 ~~~~~l~~L~~L~l~~~~~~~lp~~~~~-L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~---  325 (404)
                      +.|+.++.|..|.+..|.|+.+-+.+.. +++|..|.|.+|+|..+-+-   ..+..+|.|++|.+-+| .....+.   
T Consensus        58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl---~pLa~~p~L~~Ltll~N-pv~~k~~YR~  133 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL---DPLASCPKLEYLTLLGN-PVEHKKNYRL  133 (233)
T ss_pred             ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc---chhccCCccceeeecCC-chhcccCcee
Confidence            4588999999999999999998777765 56799999999988766432   22667889999999888 4444432   


Q ss_pred             -cccccccccccCceEec
Q 046301          326 -RIGKLTSLRTLAKFVVG  342 (404)
Q Consensus       326 -~~~~l~~L~~L~~~~~~  342 (404)
                       -+.++++|++|+...+.
T Consensus       134 yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  134 YVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             EEEEecCcceEeehhhhh
Confidence             27889999999766554

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.43  E-value=0.0072  Score=57.46  Aligned_cols=29  Identities=28%  Similarity=0.551  Sum_probs=17.6

Q ss_pred             ccccEEEecCC-CccccCcccccCCCcceEecCCCC
Q 046301          256 RQLRVVSLCGY-KIVQLPNDIAELKHLRYLDFSHTA  290 (404)
Q Consensus       256 ~~L~~L~l~~~-~~~~lp~~~~~L~~L~~L~l~~~~  290 (404)
                      .+|++|.+++| .+..+|..      |+.|+++.+.
T Consensus        94 ~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~  123 (426)
T PRK15386         94 EGLEKLTVCHCPEISGLPES------VRSLEIKGSA  123 (426)
T ss_pred             hhhhheEccCcccccccccc------cceEEeCCCC
Confidence            46777777777 45566643      4555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.06  E-value=0.0029  Score=33.26  Aligned_cols=19  Identities=21%  Similarity=0.572  Sum_probs=9.4

Q ss_pred             ccEEEecCCCccccCcccc
Q 046301          258 LRVVSLCGYKIVQLPNDIA  276 (404)
Q Consensus       258 L~~L~l~~~~~~~lp~~~~  276 (404)
                      |++|++++|.++.+|++++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.99  E-value=0.0024  Score=58.21  Aligned_cols=175  Identities=15%  Similarity=0.030  Sum_probs=101.7

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc--------------CcccccCCCcceEe
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL--------------PNDIAELKHLRYLD  285 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l--------------p~~~~~L~~L~~L~  285 (404)
                      .+..+++|+.+.+..+.-..   .........+.++..|+.|.|.+|.+...              ...+++-+.||++.
T Consensus        87 aL~~~~~L~~ldLSDNA~G~---~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i  163 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGP---KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI  163 (382)
T ss_pred             HHhcCCceeEeeccccccCc---cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence            45566788888887765100   01122334566778888888888765421              12344556788888


Q ss_pred             cCCCCcccCCCCCCCccccccccCceeecCCCCcc----ccccccccccccccccCceEeccCC--cCC-cccccccccc
Q 046301          286 FSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLL----EEMPLRIGKLTSLRTLAKFVVGKGN--CYG-LKELRSLMHL  358 (404)
Q Consensus       286 l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l----~~lp~~~~~l~~L~~L~~~~~~~~~--~~~-~~~l~~L~~L  358 (404)
                      ...|++..-+...+-..+...+.|+.+.+..|..-    .-+-.++..++.|++|++.++....  +.. -..++.+++|
T Consensus       164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence            88887775544333334556678888888777211    1122345677888888776554322  112 2346777778


Q ss_pred             ccceEEcCCCCCCCHhHHH-hccccCccCCCceEEEecCCC
Q 046301          359 QEKLTISGLENVNDAEDAK-EAQLNGKEKLEALSLKWVNST  398 (404)
Q Consensus       359 ~~~L~l~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~  398 (404)
                      + .+.+.+|---+.-..++ .+.-...++|+.|.+.+|..+
T Consensus       244 ~-El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  244 R-ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             e-eecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            8 78887774222212222 222233578888888887643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.96  E-value=0.0015  Score=59.47  Aligned_cols=92  Identities=17%  Similarity=0.129  Sum_probs=56.8

Q ss_pred             CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-----cCcccccCCCcceEecCCCCcccCCCC
Q 046301          223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPNDIAELKHLRYLDFSHTAIEVLPES  297 (404)
Q Consensus       223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~~~l~~lp~~  297 (404)
                      +-+.||++....+.   ............|...+.|+.+.++.|.|..     +-..+..+++|+.|||+.|.++.--..
T Consensus       155 ~~~~Lrv~i~~rNr---len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~  231 (382)
T KOG1909|consen  155 SKPKLRVFICGRNR---LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV  231 (382)
T ss_pred             CCcceEEEEeeccc---cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence            44556666554432   2223344455667777888888888887641     234567788888888888866532211


Q ss_pred             CCCccccccccCceeecCCC
Q 046301          298 KLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       298 ~~p~~~~~l~~L~~L~l~~~  317 (404)
                      .+-..+..+++|+.|++++|
T Consensus       232 ~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  232 ALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             HHHHHhcccchheeeccccc
Confidence            22233667778888888888

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.68  E-value=0.13  Score=55.30  Aligned_cols=145  Identities=14%  Similarity=0.184  Sum_probs=94.1

Q ss_pred             CCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccc-cchhH
Q 046301            5 NLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAE-DRSSI   83 (404)
Q Consensus         5 ~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~-~~~~i   83 (404)
                      +|+.+|+.++|....- .. . .    .+.+.++.+.|+|.|+++..++..+.......  ......    ... ....+
T Consensus       185 ~f~~~e~~~ll~~~~~-~~-~-~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~----~~~~~~~~~  251 (903)
T PRK04841        185 AFDHQEAQQFFDQRLS-SP-I-E----AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARR----LAGINASHL  251 (903)
T ss_pred             CCCHHHHHHHHHhccC-CC-C-C----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHh----hcCCCchhH
Confidence            8899999999987651 11 1 1    25678999999999999999998876542111  011111    111 12345


Q ss_pred             HHHHHH-HHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCccc-ccCC
Q 046301           84 MGALRV-SYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQW-SKID  161 (404)
Q Consensus        84 ~~~l~~-sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~-~~~~  161 (404)
                      .+.+.- -++.||+..+..++..|+++   .++. .+...     +...        ..+...+..|.+.+++.. .+.+
T Consensus       252 ~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~-~l~~~-----l~~~--------~~~~~~L~~l~~~~l~~~~~~~~  314 (903)
T PRK04841        252 SDYLVEEVLDNVDLETRHFLLRCSVLR---SMND-ALIVR-----VTGE--------ENGQMRLEELERQGLFIQRMDDS  314 (903)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhcccc---cCCH-HHHHH-----HcCC--------CcHHHHHHHHHHCCCeeEeecCC
Confidence            554443 47899999999999999986   2332 22221     1111        224667999999999653 3334


Q ss_pred             CceEEechHHHHHHHhhh
Q 046301          162 ASRFLMHDLIHDLACWAF  179 (404)
Q Consensus       162 ~~~~~mhdli~~~~~~i~  179 (404)
                      ...++.|++++++.....
T Consensus       315 ~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        315 GEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             CCEEehhHHHHHHHHHHH
Confidence            456888999999987664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.00072  Score=59.73  Aligned_cols=101  Identities=24%  Similarity=0.275  Sum_probs=67.8

Q ss_pred             CCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          224 VEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.+++.|.+.+++       ...  -.+...|+.|++|.|+-|+|+.+.+ +..+++|+.|+|+.|.|..+.+-   ..+
T Consensus        18 l~~vkKLNcwg~~-------L~D--Isic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL---~YL   84 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-------LDD--ISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDEL---EYL   84 (388)
T ss_pred             HHHhhhhcccCCC-------ccH--HHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHH---HHH
Confidence            4455555555554       111  2346788999999999999887644 67788899999999988766542   346


Q ss_pred             cccccCceeecCCCCcccccccc-----ccccccccccC
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPLR-----IGKLTSLRTLA  337 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~~-----~~~l~~L~~L~  337 (404)
                      .++++|+.|-|..|.=...-+..     +.-|++|+.|+
T Consensus        85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            78888898888877444433322     44456666664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.0069  Score=54.22  Aligned_cols=86  Identities=15%  Similarity=0.101  Sum_probs=45.3

Q ss_pred             CCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccc-ccCCCcceEecCCCCcccCCCCCCCcc
Q 046301          224 VEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPD  302 (404)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~L~~L~~L~l~~~~l~~lp~~~~p~~  302 (404)
                      .+.++-+.+..+.-     ..-.....++.+|+.|++|+++.|++...-... ..+++|++|-|.++.+.--   +....
T Consensus        70 ~~~v~elDL~~N~i-----SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~---~~~s~  141 (418)
T KOG2982|consen   70 VTDVKELDLTGNLI-----SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT---QSTSS  141 (418)
T ss_pred             hhhhhhhhcccchh-----ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh---hhhhh
Confidence            45555565555441     111223445677777778887777754322222 3456777777776654311   11112


Q ss_pred             ccccccCceeecCCC
Q 046301          303 VGNLVNLRHLKDSHS  317 (404)
Q Consensus       303 ~~~l~~L~~L~l~~~  317 (404)
                      +..+|.++.|+++.|
T Consensus       142 l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDN  156 (418)
T ss_pred             hhcchhhhhhhhccc
Confidence            555666666666555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.51  E-value=0.0005  Score=61.29  Aligned_cols=65  Identities=26%  Similarity=0.081  Sum_probs=38.9

Q ss_pred             cccccCceeecCCCCcccc-ccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCC
Q 046301          304 GNLVNLRHLKDSHSNLLEE-MPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLEN  369 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~  369 (404)
                      ...++|.+|||++|..++. .-..+-++..|++|.+..+.......+-++.+.+.|. .|++.+|-.
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~-yLdv~g~vs  375 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV-YLDVFGCVS  375 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE-EEEeccccC
Confidence            3567788888887744442 1123566777777765544333333445566777777 777776643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.41  E-value=0.0075  Score=31.63  Aligned_cols=15  Identities=40%  Similarity=0.800  Sum_probs=7.2

Q ss_pred             cceEecCCCCcccCC
Q 046301          281 LRYLDFSHTAIEVLP  295 (404)
Q Consensus       281 L~~L~l~~~~l~~lp  295 (404)
                      |++||+++|+++.+|
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            445555555444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.09  E-value=0.0011  Score=59.23  Aligned_cols=180  Identities=16%  Similarity=0.062  Sum_probs=94.5

Q ss_pred             cceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-cccc--CcccccC
Q 046301          202 LRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQL--PNDIAEL  278 (404)
Q Consensus       202 ~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l--p~~~~~L  278 (404)
                      +.++.+....+....-..-++.+.+|+.|.+.+..       ........+..-.+|+.|++++++ +++.  ---+.++
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-------LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc  259 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-------LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC  259 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-------cCcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence            44555544444332222234456666666665543       223333445666777777777665 4422  2234556


Q ss_pred             CCcceEecCCCCcccCCCCCCCcccccc-ccCceeecCCCCccccc---cccccccccccccCceEeccCCcCCcccccc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNL-VNLRHLKDSHSNLLEEM---PLRIGKLTSLRTLAKFVVGKGNCYGLKELRS  354 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l-~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~  354 (404)
                      +.|..|++++|.+..=-   ..-.+.+. ++|+.|++++|...-..   ..-..+.++|..|++.++......-+.++-+
T Consensus       260 s~L~~LNlsWc~l~~~~---Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEK---VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             hhHhhcCchHhhccchh---hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence            66777777777543100   00112221 45677777776321111   1113456677777776554433344556677


Q ss_pred             ccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301          355 LMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       355 L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      +..|+ .|.++.|-.+.  ++ .-..+..+++|.+|++..+
T Consensus       337 f~~L~-~lSlsRCY~i~--p~-~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  337 FNYLQ-HLSLSRCYDII--PE-TLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cchhe-eeehhhhcCCC--hH-HeeeeccCcceEEEEeccc
Confidence            77777 77777766432  22 2234667778888877544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.02  E-value=0.013  Score=28.51  Aligned_cols=13  Identities=38%  Similarity=0.577  Sum_probs=4.4

Q ss_pred             cceEecCCCCccc
Q 046301          281 LRYLDFSHTAIEV  293 (404)
Q Consensus       281 L~~L~l~~~~l~~  293 (404)
                      |+.|++++|+++.
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444443

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.72  E-value=0.0023  Score=56.60  Aligned_cols=78  Identities=21%  Similarity=0.231  Sum_probs=60.5

Q ss_pred             cCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc--ccccc
Q 046301          254 RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR--IGKLT  331 (404)
Q Consensus       254 ~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~--~~~l~  331 (404)
                      .+.+.+-|++.|+.+..+.- +.+++.|++|.|+-|+|+.+..      +..+++|++|+|..| .+..+-+-  +.+|+
T Consensus        17 dl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN-~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKN-CIESLDELEYLKNLP   88 (388)
T ss_pred             HHHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhc-ccccHHHHHHHhcCc
Confidence            35677888999999876532 4578999999999999998763      889999999999988 45555432  66778


Q ss_pred             cccccCce
Q 046301          332 SLRTLAKF  339 (404)
Q Consensus       332 ~L~~L~~~  339 (404)
                      +|++|=+-
T Consensus        89 sLr~LWL~   96 (388)
T KOG2123|consen   89 SLRTLWLD   96 (388)
T ss_pred             hhhhHhhc
Confidence            88887443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.08  E-value=0.035  Score=27.00  Aligned_cols=17  Identities=29%  Similarity=0.612  Sum_probs=11.3

Q ss_pred             ccccEEEecCCCccccC
Q 046301          256 RQLRVVSLCGYKIVQLP  272 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~lp  272 (404)
                      ++|+.|++++|.++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            46899999999998876

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.96  E-value=0.12  Score=28.18  Aligned_cols=18  Identities=39%  Similarity=0.632  Sum_probs=10.5

Q ss_pred             CCcceEecCCCCcccCCC
Q 046301          279 KHLRYLDFSHTAIEVLPE  296 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~  296 (404)
                      ++|++|+|++|.|+.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            455666666666665554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.96  E-value=0.12  Score=28.18  Aligned_cols=18  Identities=39%  Similarity=0.632  Sum_probs=10.5

Q ss_pred             CCcceEecCCCCcccCCC
Q 046301          279 KHLRYLDFSHTAIEVLPE  296 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~  296 (404)
                      ++|++|+|++|.|+.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            455666666666665554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.91  E-value=0.0076  Score=52.06  Aligned_cols=62  Identities=15%  Similarity=0.126  Sum_probs=42.4

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCC
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSN  318 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~  318 (404)
                      |..+..|..|+++.|.+..+|..++.+..++.+++..|..+..|.+     ++.++.++++++.++.
T Consensus        61 ~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s-----~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKS-----QKKEPHPKKNEQKKTE  122 (326)
T ss_pred             hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcc-----ccccCCcchhhhccCc
Confidence            4445566666777777777777777777777777777777766654     7777777777776663

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.86  E-value=0.13  Score=46.44  Aligned_cols=84  Identities=19%  Similarity=0.190  Sum_probs=54.6

Q ss_pred             hhhccCccccEEEecCCCccc---cCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCc-cccccc
Q 046301          250 HVVPRLRQLRVVSLCGYKIVQ---LPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNL-LEEMPL  325 (404)
Q Consensus       250 ~~~~~l~~L~~L~l~~~~~~~---lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~-l~~lp~  325 (404)
                      .+=.....++.|||.+|.|..   +-.-+.+|++|++|+++.|.+..--. .+|   -.+.+|+.|-|.++.. ....-.
T Consensus        65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp---~p~~nl~~lVLNgT~L~w~~~~s  140 (418)
T KOG2982|consen   65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLP---LPLKNLRVLVLNGTGLSWTQSTS  140 (418)
T ss_pred             HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCc---ccccceEEEEEcCCCCChhhhhh
Confidence            333567889999999999874   44456789999999999998763211 122   2456889999988732 112222


Q ss_pred             cccccccccccC
Q 046301          326 RIGKLTSLRTLA  337 (404)
Q Consensus       326 ~~~~l~~L~~L~  337 (404)
                      .+..++.++.|.
T Consensus       141 ~l~~lP~vtelH  152 (418)
T KOG2982|consen  141 SLDDLPKVTELH  152 (418)
T ss_pred             hhhcchhhhhhh
Confidence            344555555553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.49  E-value=0.18  Score=27.37  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=18.8

Q ss_pred             CccccEEEecCCCccccCcccc
Q 046301          255 LRQLRVVSLCGYKIVQLPNDIA  276 (404)
Q Consensus       255 l~~L~~L~l~~~~~~~lp~~~~  276 (404)
                      +++|++|++++|.+..+|+...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4679999999999999998653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.49  E-value=0.18  Score=27.37  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=18.8

Q ss_pred             CccccEEEecCCCccccCcccc
Q 046301          255 LRQLRVVSLCGYKIVQLPNDIA  276 (404)
Q Consensus       255 l~~L~~L~l~~~~~~~lp~~~~  276 (404)
                      +++|++|++++|.+..+|+...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4679999999999999998653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.35  E-value=0.83  Score=35.90  Aligned_cols=78  Identities=12%  Similarity=0.240  Sum_probs=30.5

Q ss_pred             hhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-cc
Q 046301          251 VVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IG  328 (404)
Q Consensus       251 ~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~  328 (404)
                      .|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+..+ +..++..    .+.++++|+.+.+..  .+..++.. +.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~--~~~~i~~~~F~   78 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN--NLKSIGDNAFS   78 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee----eeecccccccccccc--ccccccccccc
Confidence            355555555555553 3444432 2444445666665553 4444432    355555566666643  23333332 44


Q ss_pred             cccccccc
Q 046301          329 KLTSLRTL  336 (404)
Q Consensus       329 ~l~~L~~L  336 (404)
                      ..++|+.+
T Consensus        79 ~~~~l~~i   86 (129)
T PF13306_consen   79 NCTNLKNI   86 (129)
T ss_dssp             T-TTECEE
T ss_pred             cccccccc
Confidence            45555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=85.86  E-value=0.65  Score=41.48  Aligned_cols=46  Identities=11%  Similarity=-0.078  Sum_probs=20.0

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCc
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKI  268 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  268 (404)
                      .+-+|++++...+..+.-.   ........+.+.+-..|..|.+++|.+
T Consensus        87 aLlkcp~l~~v~LSDNAfg---~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFG---SEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHhcCCcceeeeccccccC---cccchHHHHHHhcCCCceeEEeecCCC
Confidence            3445555555555544300   000111223444555555555555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=84.38  E-value=2.3  Score=33.28  Aligned_cols=98  Identities=10%  Similarity=0.211  Sum_probs=45.7

Q ss_pred             cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCC
Q 046301          222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLF  300 (404)
Q Consensus       222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p  300 (404)
                      .+++.|+.+.+...        ...+....|.++..|+.+.+..+ +..++. .+..+..|+.+.+.. .+..++..   
T Consensus         9 ~~~~~l~~i~~~~~--------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~---   75 (129)
T PF13306_consen    9 YNCSNLESITFPNT--------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDN---   75 (129)
T ss_dssp             TT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT---
T ss_pred             hCCCCCCEEEECCC--------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccc---
Confidence            34455555554321        22344455777777777777664 555543 345555677777755 44444432   


Q ss_pred             ccccccccCceeecCCCCcccccccc-cccccccccc
Q 046301          301 PDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTL  336 (404)
Q Consensus       301 ~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L  336 (404)
                       .+..+++|+.+.+..+  +..++.. +.+. +|+.+
T Consensus        76 -~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i  108 (129)
T PF13306_consen   76 -AFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEI  108 (129)
T ss_dssp             -TTTT-TTECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred             -cccccccccccccCcc--ccEEchhhhcCC-CceEE
Confidence             3556777777777653  4555543 5554 55555

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.73  E-value=0.75  Score=25.06  Aligned_cols=17  Identities=35%  Similarity=0.602  Sum_probs=11.4

Q ss_pred             CcceEecCCCCcccCCC
Q 046301          280 HLRYLDFSHTAIEVLPE  296 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~  296 (404)
                      +|++|++++|+++.+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            56667777777776664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=83.65  E-value=0.65  Score=41.50  Aligned_cols=167  Identities=20%  Similarity=0.156  Sum_probs=91.1

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCc----cccC-------cccccCCCcceEecCC
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKI----VQLP-------NDIAELKHLRYLDFSH  288 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~lp-------~~~~~L~~L~~L~l~~  288 (404)
                      .+.-+..+.-+.+.++.   ...-........+.+-++|++.+++..-.    .++|       +.+-++++|+..+||.
T Consensus        25 el~~~d~~~evdLSGNt---igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          25 ELEMMDELVEVDLSGNT---IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             HHHhhcceeEEeccCCc---ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence            33446677777776654   11112233445566778888888875421    1333       4456788999999999


Q ss_pred             CCcc-cCCCCCCCccccccccCceeecCCCCcccccccc-cc-------------ccccccccCceEeccCC---cCC--
Q 046301          289 TAIE-VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IG-------------KLTSLRTLAKFVVGKGN---CYG--  348 (404)
Q Consensus       289 ~~l~-~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~-------------~l~~L~~L~~~~~~~~~---~~~--  348 (404)
                      |-+. ..|+ .+-..|++-+.|.+|.+++| .++-+--+ |+             +-+.|++.   .++.+.   ++.  
T Consensus       102 NAfg~~~~e-~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~v---icgrNRlengs~~~  176 (388)
T COG5238         102 NAFGSEFPE-ELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVV---ICGRNRLENGSKEL  176 (388)
T ss_pred             cccCcccch-HHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEE---EeccchhccCcHHH
Confidence            9654 2222 22234667788999999988 33332211 22             22334443   333322   111  


Q ss_pred             -ccccccccccccceEEcCCCCCCC--HhHHHhccccCccCCCceEEEecC
Q 046301          349 -LKELRSLMHLQEKLTISGLENVND--AEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       349 -~~~l~~L~~L~~~L~l~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                       -..|.+-..|+ .+.+..+. +..  ...+.-..+..+++|+.|+|+-|.
T Consensus       177 ~a~~l~sh~~lk-~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         177 SAALLESHENLK-EVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             HHHHHHhhcCce-eEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccc
Confidence             01133334555 66665432 121  233344456678899999998664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.46  E-value=0.066  Score=46.45  Aligned_cols=76  Identities=18%  Similarity=0.263  Sum_probs=37.0

Q ss_pred             CccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccccccc
Q 046301          255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR  334 (404)
Q Consensus       255 l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~  334 (404)
                      ...-++||++.|.+..+-..++.+..|..||++.|.+..+|..     ++++..++++++..| .....|.+++.++.++
T Consensus        41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-----~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-----AKQQRETVNAASHKN-NHSQQPKSQKKEPHPK  114 (326)
T ss_pred             cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-----HHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence            3444455555555444444444555555555555555544432     555555555544444 4445555555554444


Q ss_pred             cc
Q 046301          335 TL  336 (404)
Q Consensus       335 ~L  336 (404)
                      .+
T Consensus       115 ~~  116 (326)
T KOG0473|consen  115 KN  116 (326)
T ss_pred             hh
Confidence            44

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=80.60  E-value=5.9  Score=35.70  Aligned_cols=56  Identities=16%  Similarity=0.025  Sum_probs=40.3

Q ss_pred             CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHh
Q 046301            1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLL   56 (404)
Q Consensus         1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L   56 (404)
                      +++++++.+|..+++...+-.........--.+..+.|++.|+|.|..|..++..+
T Consensus       187 ~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       187 CHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             eeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            36899999999998887653211100111124788999999999999999988866

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	404
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	6e-50
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  176 bits (448), Expect = 6e-50
 Identities = 50/311 (16%), Positives = 96/311 (30%), Gaps = 46/311 (14%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
               +L ++  L I           +    L E    I+  C GSPL    +G+LLRD  
Sbjct: 281 PVESSLGKEKGLEILSLFV-----NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP 335

Query: 61  D-PKDWEDVLTSKIW-----DLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRF 114
           +  + +   L +K +       + D  ++  A+ +S   L   +K  +   S L K  + 
Sbjct: 336 NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKV 395

Query: 115 DERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKID-ASRFLMHDLIHD 173
             + + +LW  E             E      Q   ++S     +   + R+ +HDL  D
Sbjct: 396 PTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVD 443

Query: 174 LACWAFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQFDG-----IKRFEGLH--KVEY 226
                         S     +++  ++  R+    T   D         F   H    + 
Sbjct: 444 FLT-------EKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKM 496

Query: 227 LRTFLALLLGTR-KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLD 285
            +   AL+                H++    + R        I+   +         +L 
Sbjct: 497 HKELCALMFSLDWIKAKTELVGPAHLIHEFVEYR-------HILDEKDCAVSENFQEFLS 549

Query: 286 FSHTAIEVLPE 296
            +   +   P 
Sbjct: 550 LNGHLLGRQPF 560

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  145 bits (366), Expect = 1e-38
 Identities = 29/225 (12%), Positives = 61/225 (27%), Gaps = 19/225 (8%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
             + +L  D+C      + +        +   ++  K ++  +G+P            K 
Sbjct: 288 IEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT 344

Query: 61  DP--KDWEDVLTSKIWD-----LAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYR 113
                   + L S+              S+  AL+     L    +   A+   +P G  
Sbjct: 345 FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVD 404

Query: 114 FDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDA-SRFLMHDLIH 172
              +    +   +         +Q+++      + L  R      K      F +  +IH
Sbjct: 405 IPVKLWSCVIPVDI---CSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIH 461

Query: 173 DLACW-----AFGEISSSMESTWDGNNERRFSRNLRHLSYLTSQF 212
                           S +E           S   RH+     +F
Sbjct: 462 MFLKHVVDAQTIANGISILEQRLLEIGNNNVSVPERHIPSHFQKF 506

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.1 bits (181), Expect = 2e-14
 Identities = 51/384 (13%), Positives = 106/384 (27%), Gaps = 106/384 (27%)

Query: 16  VQHSLGRTDFVAHQYLSE-IGEKIVD----RCNGSPLAAKTLGSLLRDKYDPKDWEDVLT 70
             HS+  T       L + +  +  D        +P     +   +RD      W++   
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNWKH 349

Query: 71  SKIWDLAEDRSSIMGALRVSYHYL-PSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLL 129
                L          +  S + L P+  ++ F   S  P         + L+W     +
Sbjct: 350 VNCDKLTT-------IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD---V 399

Query: 130 QHETYGKQMEELGRKSFQVLHSRSFFQWSKIDASRFLMHDLIHDLACWAFGEISSSMEST 189
                   + +L + S          +  K   S   +  +  +L               
Sbjct: 400 IKSDVMVVVNKLHKYSL-------VEKQPK--ESTISIPSIYLELKV------------- 437

Query: 190 WDGNNERRFSRNLRHLSY-LTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLV 248
               NE    R++    Y +   FD        +  +Y              FY  +++ 
Sbjct: 438 -KLENEYALHRSIVD-HYNIPKTFDS-DDLIPPYLDQY--------------FY--SHIG 478

Query: 249 FHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFS-------HTAIEVLPESKLFP 301
            H+               K ++ P  +   + + +LDF        H +        +  
Sbjct: 479 HHL---------------KNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 302 DVGNLVNLR-HLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKG-NCYGLKELRSLMHLQ 359
            +  L   + ++ D+     E +         +  +  F+     N    K    L+ + 
Sbjct: 523 TLQQLKFYKPYICDND-PKYERL---------VNAILDFLPKIEENLICSKYTD-LLRI- 570

Query: 360 EKLTISGLENVNDA---EDAKEAQ 380
                  L   ++A   E  K+ Q
Sbjct: 571 ------ALMAEDEAIFEEAHKQVQ 588

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 245 NNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVG 304
           +         L  L+ + L    I  LP  IA L++L+ L   ++ +  L  +     + 
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-----IH 226

Query: 305 NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
           +L  L  L       L   P   G    L+ L
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSH-TAIEVLPESKLFPDVGNLVNLRHL 312
            L+ L+ + +    +  L   I  L  L  LD    TA+   P        G    L+ L
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-----FGGRAPLKRL 258

Query: 313 KDSHSNLLEEMPLRIGKLTSLRTL 336
                + L  +PL I +LT L  L
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
                  + L    + Q P+    L HL+++      +  LP++     +     L  L 
Sbjct: 79  TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-----MQQFAGLETL- 132

Query: 314 DSHSNLLEEMPLRIGKLTSLRTL 336
               N L  +P  I  L  LR L
Sbjct: 133 TLARNPLRALPASIASLNRLREL 155

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
           RL  L+ +++    +++LP+ + +   L  L  +   +  LP S     + +L  LR L 
Sbjct: 102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-----IASLNRLRELS 156

Query: 314 DSHSNLLEEMPLRIGK---------LTSLRTL 336
                 L E+P  +           L +L++L
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSL 188

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHT-AIEVLPES----KLFPDVGNLVN 308
           +   L  ++L    +  LP  IA L  LR L       +  LPE         +   LVN
Sbjct: 125 QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 309 LRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
           L+ L       +  +P  I  L +L++L
Sbjct: 185 LQSL-RLEWTGIRSLPASIANLQNLKSL 211

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 13/138 (9%)

Query: 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLR 259
           ++L+ L++ +++         L  +E+L      L     +F    +           L+
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLD-----LSRNGLSFKGCCSQSDF---GTTSLK 376

Query: 260 VVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNL 319
            + L    ++ + ++   L+ L +LDF H+ ++ + E  +F    +L NL +L D     
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYL-DISHTH 432

Query: 320 LEEMPLRI-GKLTSLRTL 336
                  I   L+SL  L
Sbjct: 433 TRVAFNGIFNGLSSLEVL 450

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 23/167 (13%)

Query: 201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPR----LR 256
            ++ L   T +    +             F  L   + ++  +  +  F++         
Sbjct: 226 TIQSLWLGTFEDMDDEDISPA-------VFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 257 QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSH 316
            L+ + L    + +LP+ +  L  L+ L  S    E L +        N  +L HL    
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA----SNFPSLTHLSIKG 334

Query: 317 SNLLEEMPLR-IGKLTSLRTL-------AKFVVGKGNCYGLKELRSL 355
           +    E+    +  L +LR L                   L  L+SL
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 24/147 (16%)

Query: 200 RNLRHLSYLT----SQFDGIKR--FEGLHKVEYL---RTFLALLLGTRKTFYVTNNLVFH 250
            N   L++L+    ++   +     E L  +  L      +                   
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-------- 373

Query: 251 VVPRLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNL 309
               L  L+ ++L   + + L  +   E   L  LD + T ++V      F    NL  L
Sbjct: 374 ---NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF---QNLHLL 427

Query: 310 RHLKDSHSNLLEEMPLRIGKLTSLRTL 336
           + L  SHS L          L +L+ L
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHL 454

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 25/158 (15%)

Query: 200 RNLRHLSYL---TSQFDGIKR--FEGLHKVEYLR------TFLA--LLLGTR--KTFYVT 244
             L +L++L     Q   I    F+  H+++ L        F+A   L G +  K  +  
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 245 NNLVFHVVPR----LRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKL 299
              +  +        + L  + L    I  +        + L+ LDF + AI  L +   
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-- 171

Query: 300 FPDVGNLVNLRHLK-DSHSNLLEEMPLRIGKLTSLRTL 336
             D+ +L    +L  + + N +  +          ++L
Sbjct: 172 --DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQ 257
             ++L+ L++ +++         L  +E+L      L     +F    +           
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD-----LSRNGLSFKGCCSQSDF---GTTS 374

Query: 258 LRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS 317
           L+ + L    ++ + ++   L+ L +LDF H+ ++ + E  +F    +L NL +L  SH+
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYLDISHT 431

Query: 318 NLLEEMPLRIGKLTSLRTL 336
           +           L+SL  L
Sbjct: 432 HTRVAFNGIFNGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 18/150 (12%)

Query: 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLR-------TFLALLLGTRKTFYVTNNLVFHVV 252
            N+   S ++   + +K F      ++L         F  L L + K    T+N   +  
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 253 P--RLRQLRVVSLCG---YKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLV 307
               L  L  + L                    L+YLD S   +       +  +   L 
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-----ITMSSNFLGLE 396

Query: 308 NLRHLKDSHSNLLEEMPLRI-GKLTSLRTL 336
            L HL   HSNL +     +   L +L  L
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 27/147 (18%)

Query: 200 RNLRHLSYL---TSQFDGIKR--FEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPR 254
            +   L  L     +   I+   ++ L  +  L               +T N +  +   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL--------------ILTGNPIQSLALG 94

Query: 255 ----LRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNL 309
               L  L+ +      +  L N  I  LK L+ L+ +H  I+     + F    NL NL
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF---SNLTNL 151

Query: 310 RHLKDSHSNLLEEMPLRIGKLTSLRTL 336
            HL  S + +       +  L  +  L
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLL 178

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 17/143 (11%)

Query: 198 FSRNLRHLSYLTS-QFDGIKR--FEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPR 254
              +   L  L S +   +    F+ L ++  L      L     +F    +        
Sbjct: 26  IPSSATRL-ELESNKLQSLPHGVFDKLTQLTKLS-----LSSNGLSFKGCCSQSDFGTTS 79

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKD 314
           L+ L    L    ++ + ++   L+ L +LDF H+ ++ + E  +F    +L NL +L D
Sbjct: 80  LKYL---DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYL-D 132

Query: 315 SHSNLLEEMPLRI-GKLTSLRTL 336
                       I   L+SL  L
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVL 155

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 11/137 (8%)

Query: 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLR 259
             L+ L+   ++     +   L  + YL      L         +    +  +     LR
Sbjct: 328 PFLKSLTLTMNKGSISFKKVALPSLSYLD-----LSRNA--LSFSGCCSYSDL-GTNSLR 379

Query: 260 VVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNL 319
            + L     + +  +   L+ L++LDF H+ ++ + E   F    +L  L +L  S++N 
Sbjct: 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF---LSLEKLLYLDISYTNT 436

Query: 320 LEEMPLRIGKLTSLRTL 336
             +       LTSL TL
Sbjct: 437 KIDFDGIFLGLTSLNTL 453

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 14/146 (9%)

Query: 255 LRQLRVVSLCGYKI--VQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHL 312
           L  L+ +++    I   +LP   + L +L ++D S+  I+ +  + L     N      L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 313 KDSHSNLLEEMPLRIGKLTSLRTL------AKFVVGKGNCYGLKELRSLMHLQEKLTISG 366
            D   N ++ +  +  +   L  L          + K     L  L        +L +  
Sbjct: 187 -DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH-----RLILGE 240

Query: 367 LENVNDAEDAKEAQLNGKEKLEALSL 392
            ++  + E  + + + G   +     
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEF 266

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 15/85 (17%)

Query: 267 KIVQLPNDIAELKHLRYLDFSHTAIEVLPE--------------SKLFPDV-GNLVNLRH 311
           +I  +   I  L  L+ + F+++                      +       NL +L  
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 312 LKDSHSNLLEEMPLRIGKLTSLRTL 336
           ++  +   + ++P  +  L  L++L
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 257 QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSH 316
           +    +       +L +D      ++     +  +E  P S        +V L  L D  
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL---QKMVKLGLL-DCV 581

Query: 317 SNLLEEMPLRIGKLTSLRTL 336
            N +  +    G    L  L
Sbjct: 582 HNKVRHLEA-FGTNVKLTDL 600

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 13/90 (14%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIA--ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHL 312
              L  + L   K+  L +D     L +L  +D S+      P         N   L+  
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ-----PLNSSQLKAF 781

Query: 313 KDSHS------NLLEEMPLRIGKLTSLRTL 336
              H        +L + P  I    SL  L
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 254 RLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHL 312
           +      V+L   +I + P    A    +  +  S+  +  +PE+ L P  GN  N   L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 313 K--DSHSNLLEEMP--LRIGKLTSLRTL 336
              D   N L  +    R   L  L  +
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNM 758

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 255 LRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
             +L  + L   +I ++P D  A    +  L FSH  ++ +P         ++  +  + 
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA---KSVYVMGSV- 649

Query: 314 DSHSNLLEEMPLRIG------KLTSLRTL 336
           D   N +      I       K  +  T+
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTV 678

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 15/136 (11%), Positives = 37/136 (27%), Gaps = 17/136 (12%)

Query: 239 KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTA-IEVLPES 297
           +  Y  N+   +    +      S    +        + LK L  ++  +   +  LP+ 
Sbjct: 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 298 KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELR---- 353
                + +L  L+ L +   N            T L         +     ++       
Sbjct: 511 -----LYDLPELQSL-NIACNRGISAAQLKADWTRLADD------EDTGPKIQIFYMGYN 558

Query: 354 SLMHLQEKLTISGLEN 369
           +L       ++  +  
Sbjct: 559 NLEEFPASASLQKMVK 574

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 15/90 (16%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAI-------EVLPESKLFPDVGNL 306
            L  L  + +        P        L+     H             P       +   
Sbjct: 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-----ITTC 805

Query: 307 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
            +L  L    SN + ++  ++     L  L
Sbjct: 806 PSLIQL-QIGSNDIRKVDEKL--TPQLYIL 832

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES-----------KLFPDV 303
              L  +      + +LP     LK L   + +  A+  LP             +  P++
Sbjct: 90  PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 149

Query: 304 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSL 333
            N   L+ + D  +N L+++P     L  +
Sbjct: 150 QNSSFLKII-DVDNNSLKKLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRH 311
           +     L+++ +    + +LP+       L ++   +  +E LPE      + NL  L  
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEELPE------LQNLPFLTA 199

Query: 312 LKDSHSNLLEEMPLRIGKLTSL 333
           +  + +N L+++P     L S+
Sbjct: 200 I-YADNNSLKKLPDLPLSLESI 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 239 KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESK 298
              Y  NN +  +      L  +      + +LP ++  L  L  +   +  ++ LP+  
Sbjct: 198 TAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL- 255

Query: 299 LFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
                    +L  L     N L ++P     LT L   
Sbjct: 256 -------PPSLEALNVRD-NYLTDLPELPQSLTFLDVS 285

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 16/137 (11%)

Query: 201 NLRHLS----YLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLR 256
            L  +      L +  D     E L+  +   T L  L  +     V+ N+   +     
Sbjct: 238 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 297

Query: 257 QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSH 316
            L  ++    +I  L +       L  L+ S+  +  LP             L  L  + 
Sbjct: 298 NLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL--------PPRLERL-IAS 345

Query: 317 SNLLEEMPLRIGKLTSL 333
            N L E+P     L  L
Sbjct: 346 FNHLAEVPELPQNLKQL 362

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 13/90 (14%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIA--ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHL 312
              L  + L   K+ +L +D     L +L  +D S+ +    P         N   L+  
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ-----PLNSSTLKGF 541

Query: 313 K------DSHSNLLEEMPLRIGKLTSLRTL 336
                     +  L E P  I    SL  L
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 10/97 (10%), Positives = 28/97 (28%), Gaps = 15/97 (15%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLF-------------- 300
             +   +      I  +   +  L  LR     ++        + +              
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 301 -PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
                NL +L  ++  +   L ++P  +  L  ++ +
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKD 314
           +++L ++     ++            L  L+ ++  I  +P +      G    + +L  
Sbjct: 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN-FC---GFTEQVENL-S 383

Query: 315 SHSNLLEEMP--LRIGKLTSLRTL 336
              N L+ +P       ++ +  +
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLF---PDVGNLVNL 309
           +   +  ++L   +I + P ++ +    L  ++     +  +P++ L     +  N   L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 310 RHLKDSHSNLLEEMP--LRIGKLTSLRTL 336
             + D   N L ++    R   L  L  +
Sbjct: 491 TSI-DLRFNKLTKLSDDFRATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 10/114 (8%), Positives = 33/114 (28%), Gaps = 1/114 (0%)

Query: 254 RLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHL 312
              ++  +SL G+    ++P+ I +L  L  L       +V         +   ++    
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 313 KDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISG 366
           +    +  +       +      +   +        +K+   +     ++    
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 254 RLRQLRVVSLCGYKIVQLPN---------DIAELKHLRYLDFSHTAIEVLPESKLFPDVG 304
            L +++++++   + +             D    + ++ +   +  ++  P         
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL---Q 327

Query: 305 NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
            +  L  L +   N LE      G    L +L
Sbjct: 328 KMKKLGML-ECLYNQLEGKLPAFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 271 LPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI-GK 329
           +   + ++K L  L+  +  +E        P  G+ + L  L +   N + E+P    G 
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKL-----PAFGSEIKLASL-NLAYNQITEIPANFCGF 375

Query: 330 LTSLRTL 336
              +  L
Sbjct: 376 TEQVENL 382

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 11/82 (13%)

Query: 262 SLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLR-------HLKD 314
           S+ G     L     +  ++  ++ S+  I   P+            L         L +
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF----STGSPLSSINLMGNMLTE 471

Query: 315 SHSNLLEEMPLRIGKLTSLRTL 336
              N L++          L ++
Sbjct: 472 IPKNSLKDENENFKNTYLLTSI 493

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 31/177 (17%), Positives = 67/177 (37%), Gaps = 22/177 (12%)

Query: 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLR------TFLALL--LGTRKTFYVTNNLVFHV 251
            NL +L+   +Q   I     L K+  L       T ++ L  L   +  Y+  + +  +
Sbjct: 66  TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI 125

Query: 252 VP--RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNL 309
            P   L ++  ++L     +   + ++ +  L YL  + + ++ +        + NL +L
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------IANLTDL 179

Query: 310 RHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISG 366
             L   + N +E++   +  LTSL               +  + ++  L   L I  
Sbjct: 180 YSL-SLNYNQIEDIS-PLASLTSLHYF---TAYVNQITDITPVANMTRLNS-LKIGN 230

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 242 YVTNNLVFHVVP--RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKL 299
            +    V  VV    L  +  + + G K+  +   I  L +L YL+ +   I  +     
Sbjct: 28  VLQKASVTDVVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP--- 83

Query: 300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
              + NLV L +L    +N + ++   +  LT+LR L
Sbjct: 84  ---LSNLVKLTNL-YIGTNKITDIS-ALQNLTNLREL 115

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 33/155 (21%)

Query: 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVP--RLRQ 257
            +L  LS   +Q + I     L  + Y                   N +  + P   + +
Sbjct: 177 TDLYSLSLNYNQIEDISPLASLTSLHYF--------------TAYVNQITDITPVANMTR 222

Query: 258 LRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPE----SKL------------FP 301
           L  + +   KI  L   +A L  L +L+     I  +      +KL              
Sbjct: 223 LNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS 281

Query: 302 DVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
            + NL  L  L  +++ L  E    IG LT+L TL
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHL 312
               L+V+ L   +I  +  D    L  L +LD S   +  L  S      G L +L++L
Sbjct: 48  ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF----GPLSSLKYL 103

Query: 313 KDSHSNLLEEMPLR--IGKLTSLRTL 336
            +   N  + + +      LT+L+TL
Sbjct: 104 -NLMGNPYQTLGVTSLFPNLTNLQTL 128

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 255 LRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
           L  L  + L    +  L +     L  L+YL+      + L  + LF    NL NL+ L+
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF---PNLTNLQTLR 129

Query: 314 DSHSNLLEEMPLR-IGKLTSLRTL 336
             +     E+       LTSL  L
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNEL 153

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKD 314
           L+ L  + +       +P+     + +R+L+ S T I V+              L  L D
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-------CIPQTLEVL-D 437

Query: 315 SHSNLLEEMPLRIGKLTSL 333
             +N L+   L + +L  L
Sbjct: 438 VSNNNLDSFSLFLPRLQEL 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 18/139 (12%), Positives = 39/139 (28%), Gaps = 25/139 (17%)

Query: 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVP--RLRQ 257
                     +          L +V  L                    +  +     L  
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQVTTL--------------QADRLGIKSIDGVEYLNN 69

Query: 258 LRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS 317
           L  ++    ++  +   +  L  L  +  ++  I  +        + NL NL  L    +
Sbjct: 70  LTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP------LANLTNLTGL-TLFN 121

Query: 318 NLLEEMPLRIGKLTSLRTL 336
           N + ++   +  LT+L  L
Sbjct: 122 NQITDID-PLKNLTNLNRL 139

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 25/138 (18%)

Query: 201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVP--RLRQL 258
            L  L   +++   I     L  +E L                TNN +  + P   L  L
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESL--------------IATNNQISDITPLGILTNL 223

Query: 259 RVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSN 318
             +SL G ++  +   +A L +L  LD ++  I  L        +  L  L  LK   + 
Sbjct: 224 DELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA------PLSGLTKLTELKLGANQ 276

Query: 319 LLEEMPLRIGKLTSLRTL 336
           +    PL    LT+L  L
Sbjct: 277 ISNISPL--AGLTALTNL 292

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 229 TFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSH 288
           T L  L    +     NN +  +      L V+S+   ++  LP        L  LD S 
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPE---SLEALDVST 189

Query: 289 TAIEVLPESKLFPDVGNLVNLRHLK---DSHSNLLEEMPLRIGKLTSLRTL 336
             +E LP            +    +       N +  +P  I  L    T+
Sbjct: 190 NLLESLPAV-----PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 10/112 (8%)

Query: 229 TFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLR----YL 284
           T L  L  + +   V NN +  +      L  + +    +  LP       H      + 
Sbjct: 153 TMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212

Query: 285 DFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
                 I  +PE+     + +L     +     N L           + +  
Sbjct: 213 RCRENRITHIPEN-----ILSLDPTCTI-ILEDNPLSSRIRESLSQQTAQPD 258

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 255 LRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
             + ++  +    + Q    +     +++ LD S   +  +  + L         L  L 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL----APFTKLELL- 63

Query: 314 DSHSNLLEEMPLRIGKLTSLRTL 336
           +  SN+L E    +  L++LRTL
Sbjct: 64  NLSSNVLYETL-DLESLSTLRTL 85

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKD 314
             +L+ + L   K+  +  +      + ++   +  + ++ ++     +    NL H  D
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-----LRFSQNLEHF-D 243

Query: 315 SHSNLLEEMPLRIGKLTSLR 334
              N      LR     + R
Sbjct: 244 LRGNGFHCGTLRDFFSKNQR 263

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 11/83 (13%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
                 V+++    +  LP+ +    H+  L      +  LP             LR L 
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPAL--------PPELRTL- 86

Query: 314 DSHSNLLEEMPLRIGKLTSLRTL 336
           +   N L  +P+    L  L   
Sbjct: 87  EVSGNQLTSLPVLPPGLLELSIF 109

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 26/140 (18%), Positives = 41/140 (29%), Gaps = 16/140 (11%)

Query: 201 NLRHLS----YLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLR 256
            LR L      LTS          L       T L  L       ++  N +  +     
Sbjct: 82  ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP 141

Query: 257 QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSH 316
            L+ +S+   ++  LP   +    L  L   +  +  LP             L+ L    
Sbjct: 142 GLQELSVSDNQLASLPALPS---ELCKLWAYNNQLTSLPML--------PSGLQEL-SVS 189

Query: 317 SNLLEEMPLRIGKLTSLRTL 336
            N L  +P    +L  L   
Sbjct: 190 DNQLASLPTLPSELYKLWAY 209

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 20/110 (18%), Positives = 32/110 (29%), Gaps = 16/110 (14%)

Query: 239 KTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES- 297
            T  + +N +  +     +LR + + G ++  LP     L  L       T +  LP   
Sbjct: 64  TTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGL 123

Query: 298 -----------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
                       L      L  L        N L  +P    +L  L   
Sbjct: 124 CKLWIFGNQLTSLPVLPPGLQEL----SVSDNQLASLPALPSELCKLWAY 169

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 16/117 (13%)

Query: 229 TFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSH 288
             L  L       +  NN +  +      L+ +S+   ++  LP   +EL  L   +   
Sbjct: 154 ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRL 213

Query: 289 TAIEVLPES------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL 333
           T++  LP               L      L  L        N L  +P+    L SL
Sbjct: 214 TSLPALPSGLKELIVSGNRLTSLPVLPSELKEL----MVSGNRLTSLPMLPSGLLSL 266

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKD 314
           +++L  + +   ++V L      +  L+ LD SH  +  +       +      L +L  
Sbjct: 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE-----RNQPQFDRLENL-Y 324

Query: 315 SHSNLLEEMPLRIGKLTSLRTL 336
              N +  +   +    +L+ L
Sbjct: 325 LDHNSIVTLK--LSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 255 LRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
            RQ+ +++L   +I ++     A    ++ L     AI  LP   +F    N+  L  L 
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VF---QNVPLLTVL- 122

Query: 314 DSHSNLLEEMPLRI-GKLTSLRTL 336
               N L  +P  I      L TL
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTL 146

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHL 312
            L   ++V+     + +LP  +    + +  L+ +   IE +              ++ L
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF----AYAHTIQKL 98

Query: 313 KDSHSNLLEEMPLRI-GKLTSLRTL 336
                N +  +P  +   +  L  L
Sbjct: 99  -YMGFNAIRYLPPHVFQNVPLLTVL 122

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKD 314
           +++L  + +   ++V L      +  L+ LD SH  +  +       +      L +L  
Sbjct: 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE-----RNQPQFDRLENL-Y 330

Query: 315 SHSNLLEEMPLRIGKLTSLRTL 336
              N +  +   +    +L+ L
Sbjct: 331 LDHNSIVTLK--LSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 255 LRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
            RQ+ +++L   +I ++     A    ++ L     AI  LP   +F    N+  L  L 
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VF---QNVPLLTVL- 128

Query: 314 DSHSNLLEEMPLRI-GKLTSLRTL 336
               N L  +P  I      L TL
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTL 152

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 255 LRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
           +  L V+ L    +  LP  I      L  L  S+  +E + +   F       +L++L 
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TF---QATTSLQNL- 176

Query: 314 DSHSNLLEEMPLRIGKLTSLRTL 336
              SN L  + L    + SL   
Sbjct: 177 QLSSNRLTHVDL--SLIPSLFHA 197

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 31/149 (20%)

Query: 200 RNLRHLSYLTSQFDGIKR-----FEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVP- 253
           R  R+L+ L    + + R     F GL  +E L               +++N     V  
Sbjct: 53  RACRNLTILWLHSNVLARIDAAAFTGLALLEQL--------------DLSDNAQLRSVDP 98

Query: 254 ----RLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVN 308
                L +L  + L    + +L   +   L  L+YL     A++ LP+   F    +L N
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-TF---RDLGN 154

Query: 309 LRHLKDSHSNLLEEMPLRI-GKLTSLRTL 336
           L HL   H N +  +P R    L SL  L
Sbjct: 155 LTHL-FLHGNRISSVPERAFRGLHSLDRL 182

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 29/149 (19%)

Query: 200 RNLRHLSYLTSQFDGIKR-----FEGLHKVEYLRTFLALLLGTRKTFYVTNNL------V 248
             L +L  L    + +       F  +  + YL   L+           +N+L      +
Sbjct: 61  TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD--LS-----------SNHLHTLDEFL 107

Query: 249 FHVVPRLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLV 307
           F     L+ L V+ L    IV +  +   ++  L+ L  S   I   P   L  D   L 
Sbjct: 108 FS---DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE-LIKDGNKLP 163

Query: 308 NLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
            L  L  S + L +     + KL +    
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 254 RLRQLRVVSLCGYKIV--QLPNDIAELKHLRYLDFSHTAIE-VLPESKLFPDVGNLVNLR 310
            L  L  + + G   +   +P  IA+L  L YL  +HT +   +P+      +  +  L 
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-----LSQIKTLV 128

Query: 311 HLKDSHSNLLE-EMPLRIGKLTSLRTL 336
            L D   N L   +P  I  L +L  +
Sbjct: 129 TL-DFSYNALSGTLPPSISSLPNLVGI 154

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 254 RLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIE-VLPESKLFPDVGNLVNLRH 311
           +L QL  + +    +   +P+ ++++K L  LDFS+ A+   LP S     + +L NL  
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-----ISSLPNLVG 153

Query: 312 LKDSHSNLLEEMPLRIGKLTSLRT 335
           +    + +   +P   G  + L T
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFT 177

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLF----PDVGNLVNL 309
           R+  L +  L   K   +P+ +A L +L +L            + L     P +  L  L
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-------NNLVGPIPPAIAKLTQL 103

Query: 310 RHLKDSHSNLLEEMPLRIGKLTSLRTL 336
            +L  +H+N+   +P  + ++ +L TL
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTL 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 255 LRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
             + ++  +    + Q    +     +++ LD S   +  +  + L         L  L 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL----APFTKLELLN 64

Query: 314 DSHSNLLEEMPLRIGKLTSLRTL 336
            S  N+L E    +  L++LRTL
Sbjct: 65  LSS-NVLYETL-DLESLSTLRTL 85

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKD 314
             +L+ + L   K+  +  +      + ++   +  + ++ ++     +    NL H  D
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-----LRFSQNLEHF-D 243

Query: 315 SHSNLLEEMPLR--IGKLTSLRTLA 337
              N      LR    K   ++T+A
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVA 268

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKD 314
              ++ +++           I+ L +L  L      +     S   P++  L +L  L  
Sbjct: 65  AHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVT----SDKIPNLSGLTSLTLLDI 119

Query: 315 SHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAE 374
           SHS   + +  +I  L  + ++   +   G    +  L++L  L+  L I   + V+D  
Sbjct: 120 SHSAHDDSILTKINTLPKVNSI--DLSYNGAITDIMPLKTLPELKS-LNIQF-DGVHDYR 175

Query: 375 DAKEAQLNGKEKLEALSL 392
                 +    KL  L  
Sbjct: 176 G-----IEDFPKLNQLYA 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 8e-05
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 270 QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR--I 327
            + + +  L  L  L  S++ I     +          +L  L  S ++L   +     +
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHI-----NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL 122

Query: 328 GKLTSLRTL---AKFVVGKGNCYGLKELRSLMHL 358
           G  + L+ L   +  +   G   G  +L SL  L
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 20/103 (19%)

Query: 254 RLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIE-VLPESKL------------ 299
               L+ + + G K+       I+    L+ L+ S       +P   L            
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 280

Query: 300 ----FPD--VGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
                PD   G    L  L  S ++    +P   G  + L +L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 21/146 (14%)

Query: 200 RNLRHLSYLT---SQFDGIKR--FEGLHKVEYL---RTFLALLLGTRKTFYVTNNLVFHV 251
           + L+ L +L    +   GIK   F GL  ++YL    +F +L   T +TF    +     
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH----- 380

Query: 252 VPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLR 310
                 L +++L   KI ++  +  + L HL  LD     I      + +     L N+ 
Sbjct: 381 ----SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW---RGLENIF 433

Query: 311 HLKDSHSNLLEEMPLRIGKLTSLRTL 336
            +  S++  L+        + SL+ L
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRL 459

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 27/147 (18%)

Query: 198 FSRNLRHLSYLTS-QFDGIKR--FEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPR 254
              N+  L  LT  Q   +    F    ++  L               V  N +  + P 
Sbjct: 23  LPTNITVL-NLTHNQLRRLPAANFTRYSQLTSL--------------DVGFNTISKLEPE 67

Query: 255 ----LRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNL 309
               L  L+V++L   ++ QL +   A   +L  L     +I+ +  +          NL
Sbjct: 68  LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF----VKQKNL 123

Query: 310 RHLKDSHSNLLEEMPLRIGKLTSLRTL 336
             L  SH+ L         +L +L+ L
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 36/185 (19%), Positives = 64/185 (34%), Gaps = 29/185 (15%)

Query: 200 RNLRHLSYLT---SQFDGI--KRFEGLHKVEYL---RTFLALLLGTRKTFYVTNNLVFHV 251
           + LR+L+ L    +    I     EGL K+E L      LA L   +             
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--WKHANPGGPIYFLK- 533

Query: 252 VPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLR 310
              L  L +++L      ++P +   +L  L+ +D     +  LP S       N V+L+
Sbjct: 534 --GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF----NNQVSLK 587

Query: 311 HLKDSHSNLLEEMPLRI--GKLTSLRTLA----KFVVGKGNCYGLKELRSLMHLQEKLTI 364
            L     NL+  +  ++      +L  L      F      C  +    + ++      I
Sbjct: 588 SLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPF---DCTCESIAWFVNWINET-HTNI 642

Query: 365 SGLEN 369
             L +
Sbjct: 643 PELSS 647

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHL 312
            L  L  + L    +  L +     L  L +L+      + L E+ LF    +L  L+ L
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF---SHLTKLQIL 154

Query: 313 KDSHSNLLEEMPLRI-GKLTSLRTL 336
           +  + +   ++  +    LT L  L
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEEL 179

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK- 313
              LR + L   K+V++P  +A+ K+++ +   +  I  +  +  F   G          
Sbjct: 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN-DFCPPGYNTKKASYSG 297

Query: 314 -DSHSNLLEEMPLRIG---KLTSLRTL 336
               SN ++   ++      +     +
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAV 324

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 10/89 (11%)

Query: 253 PRLRQLRVVSLCGYKIVQL--PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLR 310
            RL+ L+ + +       +   N    L  L  L   +     L     F     L NL 
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AF---NGLANLE 106

Query: 311 HLKDSHSNLLEEMPLRIG---KLTSLRTL 336
            L       L+   L       LTSL  L
Sbjct: 107 VL-TLTQCNLDGAVLSGNFFKPLTSLEML 134

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 28/147 (19%)

Query: 200 RNLRHLSYLTSQFDGIKR-----FEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPR 254
             L +L+ L    + I       F+ L+ ++ L               V +N + ++  R
Sbjct: 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSL--------------EVGDNDLVYISHR 146

Query: 255 ----LRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNL 309
               L  L  ++L    +  +P +  + L  L  L   H  I  + +         L  L
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF----KRLYRL 202

Query: 310 RHLKDSHSNLLEEMPLRIGKLTSLRTL 336
           + L+ SH   L+ M        +L +L
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSL 229

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 18/112 (16%)

Query: 225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYL 284
           +   + +A     + T  ++         +L  L  +      I  +   I +L  L  L
Sbjct: 18  DNFASEVAAAFEMQATDTIS-------EEQLATLTSLDCHNSSITDMTG-IEKLTGLTKL 69

Query: 285 DFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
             +   I  L       D+    NL +L    SN L  +   +  LT L  L
Sbjct: 70  ICTSNNITTL-------DLSQNTNLTYL-ACDSNKLTNLD--VTPLTKLTYL 111

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 254 RLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLK 313
            L  L  + L   ++  LP     L  L  LD S   +  LP          L  L+ L 
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-AL---RGLGELQEL- 129

Query: 314 DSHSNLLEEMPLRI-GKLTSLRTL 336
               N L+ +P  +      L  L
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKL 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	404
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.78
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.75
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.56
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.51
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.5
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.47
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.45
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.43
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.42
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.42
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.4
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.39
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.39
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.37
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.36
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.36
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.35
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.34
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.34
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.33
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.31
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.3
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.3
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.3
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.3
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.3
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.29
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.29
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.28
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.25
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.25
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.24
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.24
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.23
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.21
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.2
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.2
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.2
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.18
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.17
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.14
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.13
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.12
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.02
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.99
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.98
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.96
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.96
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.95
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.93
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.85
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.85
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.83
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.82
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.82
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.68
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.65
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.59
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.35
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.08
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.86
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.56
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.23
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.73
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.27
2fna_A	357	Conserved hypothetical protein; structural genomic	95.75
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	93.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.08
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.31
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	90.94
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	90.93
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	84.42
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	83.96

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.92  E-value=7.3e-26  Score=225.59  Aligned_cols=172  Identities=15%  Similarity=0.177  Sum_probs=135.3

Q ss_pred             CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccc
Q 046301            1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDR   80 (404)
Q Consensus         1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~   80 (404)
                      |+|++|+++|||+||+++||+...   ++.+++++++|+++|+|+||||+++|+.|+.+ +. .|...+....+..  ..
T Consensus       288 ~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~--~~  360 (549)
T 2a5y_B          288 IEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESR--GL  360 (549)
T ss_dssp             EECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHH--CS
T ss_pred             EECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcc--cH
Confidence            579999999999999999986542   46788999999999999999999999999876 32 2323333222211  23


Q ss_pred             hhHHHHHHHHHhcCChhhhhhhh-----------hcccCCCCceeChhHHHHHHHHC--CCcccCCCCCcHHHHHHHHHH
Q 046301           81 SSIMGALRVSYHYLPSYVKRCFA-----------YCSFLPKGYRFDERQIVLLWMAE--GLLQHETYGKQMEELGRKSFQ  147 (404)
Q Consensus        81 ~~i~~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~li~~w~~~--g~~~~~~~~~~~~~~~~~~~~  147 (404)
                      ..+..++++||+.||...|.||+           |||+||+++.|+    +..|+|+  |++.........++.+. +++
T Consensus       361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~  435 (549)
T 2a5y_B          361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLK  435 (549)
T ss_dssp             STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHH
T ss_pred             HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHH
Confidence            56888999999999999999999           999999999998    8899999  99987554556677777 999


Q ss_pred             HHhhCCCcccccC-CCceEEechHHHHHHHhhhcCceE
Q 046301          148 VLHSRSFFQWSKI-DASRFLMHDLIHDLACWAFGEISS  184 (404)
Q Consensus       148 ~L~~~sli~~~~~-~~~~~~mhdli~~~~~~i~~~~~~  184 (404)
                      +|+++||++.... ...+|+|||++|++|+.++.+++.
T Consensus       436 ~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          436 RLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence            9999999998653 356799999999999999877654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.78  E-value=3.2e-19  Score=194.39  Aligned_cols=163  Identities=22%  Similarity=0.289  Sum_probs=133.9

Q ss_pred             CCCCC-CChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhcc--
Q 046301            1 HSLRN-LLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLA--   77 (404)
Q Consensus         1 y~~~~-L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~--   77 (404)
                      |++++ |+++||++||+..++...     +.+++.+++|+++|+|+||||+++|+.|+.+.  ..|+..++.+.....  
T Consensus       280 ~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~  352 (1249)
T 3sfz_A          280 VPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKR  352 (1249)
T ss_dssp             EECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCC
T ss_pred             EEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhh
Confidence            34664 999999999999984322     34457799999999999999999999999883  579888876543221  


Q ss_pred             ------ccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhh
Q 046301           78 ------EDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHS  151 (404)
Q Consensus        78 ------~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~  151 (404)
                            .....+..++.+||+.|++++|.||+|||+||+++.|++..++..|.++            .+.+..++++|++
T Consensus       353 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~  420 (1249)
T 3sfz_A          353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVN  420 (1249)
T ss_dssp             SSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHh
Confidence                  1125689999999999999999999999999999999999999999653            2677889999999


Q ss_pred             CCCcccccCC-CceEEechHHHHHHHhhhcCc
Q 046301          152 RSFFQWSKID-ASRFLMHDLIHDLACWAFGEI  182 (404)
Q Consensus       152 ~sli~~~~~~-~~~~~mhdli~~~~~~i~~~~  182 (404)
                      +||++....+ ...|+||++++++++....++
T Consensus       421 ~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          421 KSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             TTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             ccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            9999875432 345999999999999887654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.75  E-value=1.7e-18  Score=177.15  Aligned_cols=138  Identities=14%  Similarity=0.237  Sum_probs=115.5

Q ss_pred             CCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCC-ChhHHHHHHhhhhhhccccchhH
Q 046301            5 NLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY-DPKDWEDVLTSKIWDLAEDRSSI   83 (404)
Q Consensus         5 ~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~-~~~~w~~~l~~~~~~~~~~~~~i   83 (404)
                      +|+.+|||+||++. |+..       ..+++.++   |+|+||||+++|+.|+++. +.+.|+..          ....+
T Consensus       297 ~LS~eEA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I  355 (1221)
T 1vt4_I          297 TLTPDEVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKL  355 (1221)
T ss_dssp             CCCHHHHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHH
T ss_pred             CcCHHHHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHH
Confidence            89999999999998 4332       12334444   9999999999999999884 47788643          23679


Q ss_pred             HHHHHHHHhcCChhh-hhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCcccccCCC
Q 046301           84 MGALRVSYHYLPSYV-KRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKIDA  162 (404)
Q Consensus        84 ~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~~~~~~  162 (404)
                      ..+++.||+.||++. |.||++||+||+++.|++..++..|+++|           ++.+..++++|+++||++.. .+.
T Consensus       356 ~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-~~~  423 (1221)
T 1vt4_I          356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-PKE  423 (1221)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-SSS
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-CCC
Confidence            999999999999999 99999999999999999999999999876           13578899999999999974 345


Q ss_pred             ceEEechHHHHHH
Q 046301          163 SRFLMHDLIHDLA  175 (404)
Q Consensus       163 ~~~~mhdli~~~~  175 (404)
                      ..++|||++++++
T Consensus       424 ~rYrMHDLllELr  436 (1221)
T 1vt4_I          424 STISIPSIYLELK  436 (1221)
T ss_dssp             SEEBCCCHHHHHH
T ss_pred             CEEEehHHHHHHh
Confidence            7899999999865

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.69  E-value=7.2e-17  Score=162.53  Aligned_cols=157  Identities=25%  Similarity=0.354  Sum_probs=127.7

Q ss_pred             CCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhcc------
Q 046301            4 RNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLA------   77 (404)
Q Consensus         4 ~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~------   77 (404)
                      ++|+.+||++||...++...     ....+.+.+|+++|+|+||||+.+|..|+.+  ...|+..++.+.....      
T Consensus       284 ~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~~~~~  356 (591)
T 1z6t_A          284 SSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKRIRKS  356 (591)
T ss_dssp             SSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCCSSCC
T ss_pred             CCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHHhhhc
Confidence            58999999999999986421     2234678999999999999999999999987  3479887776543221      


Q ss_pred             --ccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCc
Q 046301           78 --EDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFF  155 (404)
Q Consensus        78 --~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli  155 (404)
                        .....+..++..||+.||++.|.||+++|+||+|+.|+...++..|.++            .+.+...+.+|+++||+
T Consensus       357 ~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll  424 (591)
T 1z6t_A          357 SSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLL  424 (591)
T ss_dssp             CSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSS
T ss_pred             cccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCe
Confidence              1225789999999999999999999999999999999999999988642            14567889999999999


Q ss_pred             ccccC-CCceEEechHHHHHHHhhh
Q 046301          156 QWSKI-DASRFLMHDLIHDLACWAF  179 (404)
Q Consensus       156 ~~~~~-~~~~~~mhdli~~~~~~i~  179 (404)
                      +.... ....++||++++++++...
T Consensus       425 ~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          425 FCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             EEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             EEecCCCccEEEEcHHHHHHHHhhh
Confidence            86542 3357999999999998773

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.56  E-value=4.9e-15  Score=137.95  Aligned_cols=183  Identities=16%  Similarity=0.143  Sum_probs=130.4

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccc--cccchhhhhhhccCccccEEEecCCCccccCccccc
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTF--YVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAE  277 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~  277 (404)
                      ..++.|.+..+.+..+  ...+.++++|+.|.+..+......  ..........+.++++|++|++++|.+..+|..++.
T Consensus       127 ~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~  204 (328)
T 4fcg_A          127 AGLETLTLARNPLRAL--PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN  204 (328)
T ss_dssp             TTCSEEEEESCCCCCC--CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGG
T ss_pred             CCCCEEECCCCccccC--cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcC
Confidence            4577777777766532  345677888888888775411000  000000112244588899999999988888888889


Q ss_pred             CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccc
Q 046301          278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMH  357 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~  357 (404)
                      +++|++|++++|.+..+|.     .++.+++|++|++++|.....+|..++.+++|++|++..+... ...+..+.++++
T Consensus       205 l~~L~~L~L~~N~l~~l~~-----~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~  278 (328)
T 4fcg_A          205 LQNLKSLKIRNSPLSALGP-----AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQ  278 (328)
T ss_dssp             CTTCCEEEEESSCCCCCCG-----GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTT
T ss_pred             CCCCCEEEccCCCCCcCch-----hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCC
Confidence            9999999999998886664     4889999999999998788888888899999999866543322 334456788888


Q ss_pred             cccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301          358 LQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       358 L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      |+ .|+++++....    .+|..+.++++|+.+.+..+
T Consensus       279 L~-~L~L~~n~~~~----~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          279 LE-KLDLRGCVNLS----RLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CC-EEECTTCTTCC----CCCGGGGGSCTTCEEECCGG
T ss_pred             CC-EEeCCCCCchh----hccHHHhhccCceEEeCCHH
Confidence            88 89998866543    45566888888998888654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.55  E-value=5.5e-15  Score=137.57  Aligned_cols=177  Identities=21%  Similarity=0.211  Sum_probs=134.2

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCc-cccCccccc
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKI-VQLPNDIAE  277 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~lp~~~~~  277 (404)
                      ...++.+.+..+.+..+  ...+.++++|+.|.+..+.       .. ..+..+.++++|++|++++|.+ ..+|..++.
T Consensus       103 l~~L~~L~L~~n~l~~l--p~~~~~l~~L~~L~Ls~n~-------l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~  172 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMEL--PDTMQQFAGLETLTLARNP-------LR-ALPASIASLNRLRELSIRACPELTELPEPLAS  172 (328)
T ss_dssp             GTTCSEEEEESSCCCCC--CSCGGGGTTCSEEEEESCC-------CC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred             CCCCCEEECCCCCccch--hHHHhccCCCCEEECCCCc-------cc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence            34678888887776532  2456778889999888765       12 2344588889999999998664 477877654


Q ss_pred             ---------CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCC
Q 046301          278 ---------LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYG  348 (404)
Q Consensus       278 ---------L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~  348 (404)
                               +++|++|++++|.+..+|.     .++++++|++|++++| .+..+|..++++++|++|++..+... ...
T Consensus       173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~-----~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~-~~~  245 (328)
T 4fcg_A          173 TDASGEHQGLVNLQSLRLEWTGIRSLPA-----SIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTAL-RNY  245 (328)
T ss_dssp             EC-CCCEEESTTCCEEEEEEECCCCCCG-----GGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTC-CBC
T ss_pred             ccchhhhccCCCCCEEECcCCCcCcchH-----hhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcch-hhh
Confidence                     8899999999998886664     4999999999999998 77889888999999999966543322 334


Q ss_pred             ccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          349 LKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       349 ~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                      +..+..+++|+ .|.+.++....    .+|..+.++++|+.|+|+.|..
T Consensus       246 p~~~~~l~~L~-~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          246 PPIFGGRAPLK-RLILKDCSNLL----TLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CCCTTCCCCCC-EEECTTCTTCC----BCCTTGGGCTTCCEEECTTCTT
T ss_pred             HHHhcCCCCCC-EEECCCCCchh----hcchhhhcCCCCCEEeCCCCCc
Confidence            55688889999 99998866543    4455688899999999988763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.51  E-value=3.6e-14  Score=138.05  Aligned_cols=129  Identities=18%  Similarity=0.200  Sum_probs=93.7

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~  276 (404)
                      ++..++.|.+..+.+..+. ...+.++++|+.|.+..+.       ...+.+..|.++++|++|++++|.+..+|+. +.
T Consensus        73 ~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  144 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNS-------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE  144 (452)
T ss_dssp             CCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred             CCCCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCc-------cCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence            4567888888887766532 3456788999999888765       3445566788889999999999998877765 77


Q ss_pred             cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCc
Q 046301          277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK  338 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~  338 (404)
                      .+++|++|++++|.+..+|..    .+.++++|++|++++|..+..+|.. +.++++|++|++
T Consensus       145 ~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L  203 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL  203 (452)
T ss_dssp             SCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCCCEEECCCCCcceeCHh----HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence            889999999999988877653    4666677777777665566666553 566666666643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.51  E-value=1.9e-14  Score=133.04  Aligned_cols=128  Identities=18%  Similarity=0.247  Sum_probs=82.9

Q ss_pred             CCcceEEEEeccCccc-cccccccCCCCccEEEecc-cCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccc
Q 046301          200 RNLRHLSYLTSQFDGI-KRFEGLHKVEYLRTFLALL-LGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIA  276 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~-~~~~~~~~~~~L~~L~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~  276 (404)
                      ..++.+.+..+.+... .....+.++++|+.|.+.+ +.       .....+..|.++++|++|++++|.+. .+|..+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  122 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-------EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-------ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence            5677777777665531 1234566778888887764 33       22233455677777777777777776 6777777


Q ss_pred             cCCCcceEecCCCCcc-cCCCCCCCccccccccCceeecCCCCccccccccccccc-cccccCce
Q 046301          277 ELKHLRYLDFSHTAIE-VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT-SLRTLAKF  339 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~-~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~~~  339 (404)
                      .+++|++|++++|.+. .+|     ..+..+++|++|++++|.....+|..+++++ +|++|++.
T Consensus       123 ~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~  182 (313)
T 1ogq_A          123 QIKTLVTLDFSYNALSGTLP-----PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCC-----GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred             CCCCCCEEeCCCCccCCcCC-----hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence            7777777777777776 333     3477777777777777733336666666666 66666443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.51  E-value=5.3e-14  Score=136.39  Aligned_cols=130  Identities=21%  Similarity=0.250  Sum_probs=93.3

Q ss_pred             ccCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-cc
Q 046301          197 RFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DI  275 (404)
Q Consensus       197 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~  275 (404)
                      .++..++.+.+..+.+..+. ...+.++++|+.|.+..+.       ...+.+..|.++++|++|++++|.++.+|+ .+
T Consensus        61 ~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  132 (440)
T 3zyj_A           61 GISTNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNH-------IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF  132 (440)
T ss_dssp             CCCTTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSC-------CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred             CCCCCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCc-------CCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence            34567788888877765543 2456788899999888765       334555678888999999999999888776 58


Q ss_pred             ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCc
Q 046301          276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK  338 (404)
Q Consensus       276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~  338 (404)
                      ..+++|++|++++|.+..+|..    .+.++++|++|++++|..+..+|.. +.++++|++|++
T Consensus       133 ~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L  192 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIESIPSY----AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL  192 (440)
T ss_dssp             CSCSSCCEEECCSCCCCEECTT----TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred             hccccCceeeCCCCcccccCHH----HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence            8889999999999988877653    4666666777777665556666543 566666666633

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.50  E-value=1e-13  Score=125.29  Aligned_cols=180  Identities=19%  Similarity=0.248  Sum_probs=137.7

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~  276 (404)
                      ++..++.+.+..+.+..+. ...+.++++|+.|.+..+.       ...++...|.++++|++|++++|.+..+|.. +.
T Consensus        35 ~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-------l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  106 (270)
T 2o6q_A           35 IPADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK-------LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD  106 (270)
T ss_dssp             CCTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC-------CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc-------cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence            4567888888887765533 2357789999999998765       3355566788999999999999999988754 58


Q ss_pred             cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccc
Q 046301          277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSL  355 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L  355 (404)
                      .+++|++|++++|.+..+|..    .+..+++|++|++++| .+..+|.. ++.+++|+.|++..+... ......+..+
T Consensus       107 ~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l  180 (270)
T 2o6q_A          107 QLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKL  180 (270)
T ss_dssp             TCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTC
T ss_pred             cccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc-EeChhHhccC
Confidence            899999999999999977643    5789999999999999 78888876 789999999966433222 1122347788


Q ss_pred             cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          356 MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       356 ~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      ++|+ .|.+.++.- .   ...+..+..+++|+.|+++.|.
T Consensus       181 ~~L~-~L~L~~N~l-~---~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          181 TELK-TLKLDNNQL-K---RVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTCC-EEECCSSCC-S---CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcC-EEECCCCcC-C---cCCHHHhccccCCCEEEecCCC
Confidence            8999 999987532 2   3333457788999999998875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.47  E-value=1.4e-13  Score=125.26  Aligned_cols=137  Identities=23%  Similarity=0.213  Sum_probs=74.2

Q ss_pred             hhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-
Q 046301          249 FHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-  326 (404)
Q Consensus       249 ~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-  326 (404)
                      +..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+..+|..    .++.+++|++|++++| .+..+|.. 
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~  172 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGN-RISSVPERA  172 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh----HhccCCCccEEECCCC-cccccCHHH
Confidence            33455555566666666555544 33455556666666666655544422    3556666666666666 45555543 


Q ss_pred             ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          327 IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       327 ~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +..+++|++|++..+... ...+..+..+++|+ .|.+.++.-    .+..+..+..+++|+.|+++.|.
T Consensus       173 ~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM-TLYLFANNL----SALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCC-EEECCSSCC----SCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hcCccccCEEECCCCccc-ccCHhHccCccccc-EeeCCCCcC----CcCCHHHcccCcccCEEeccCCC
Confidence            666666666644322211 11234455666666 666665432    12222345666777777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.45  E-value=1.6e-13  Score=125.03  Aligned_cols=181  Identities=14%  Similarity=0.106  Sum_probs=134.1

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-cccc-Cccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQL-PNDI  275 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-p~~~  275 (404)
                      .+..++.+.+..+.+.... ...+.++++|+.|.+..+.       ...+.+..|.++++|++|++++|. +..+ |..+
T Consensus        30 ~~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~  101 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-------LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (285)
T ss_dssp             CCTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             CCCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-------cceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence            4567888888777665532 2346788999999987765       234445678889999999999997 7776 6778


Q ss_pred             ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccc
Q 046301          276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRS  354 (404)
Q Consensus       276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~  354 (404)
                      ..+++|++|++++|.+..++.    ..+.++++|++|++++| .+..+|.. ++++++|++|++..+... ......+..
T Consensus       102 ~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~  175 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRG  175 (285)
T ss_dssp             TTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTT
T ss_pred             cCCcCCCEEECCCCcCCEECH----hHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccc-ccCHHHhcC
Confidence            899999999999999887643    35888999999999998 67777755 888999999965433221 111223777


Q ss_pred             ccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          355 LMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       355 L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                      +++|+ .|.+.++.    +.+..+..+.++++|+.|+++.|.-
T Consensus       176 l~~L~-~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          176 LHSLD-RLLLHQNR----VAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             CTTCC-EEECCSSC----CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccC-EEECCCCc----ccccCHhHccCcccccEeeCCCCcC
Confidence            88888 88887754    3344466788899999999988753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.44  E-value=1.4e-13  Score=129.47  Aligned_cols=183  Identities=16%  Similarity=0.198  Sum_probs=140.1

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~  276 (404)
                      ++..++.+.+..+.+.... ...+.++++|+.|.+.++.       .....+..|.++++|++|++++|.++.+|.. ++
T Consensus        50 ~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  121 (353)
T 2z80_A           50 LTEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG-------INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK  121 (353)
T ss_dssp             CCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred             ccccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc-------cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence            3457888888877765532 2357789999999998765       3345566789999999999999999999877 88


Q ss_pred             cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-ccccccccccccCceEeccCCcCCccccccc
Q 046301          277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVVGKGNCYGLKELRSL  355 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L  355 (404)
                      .+++|++|++++|.+..+|..   ..+.++++|++|++++|..+..+| ..++++++|++|++..+... ...+..+..+
T Consensus       122 ~l~~L~~L~L~~n~l~~l~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l  197 (353)
T 2z80_A          122 PLSSLTFLNLLGNPYKTLGET---SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSI  197 (353)
T ss_dssp             TCTTCSEEECTTCCCSSSCSS---CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTC
T ss_pred             CCccCCEEECCCCCCcccCch---hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-ccCHHHHhcc
Confidence            999999999999999987751   148899999999999986677775 45899999999976654332 2234567888


Q ss_pred             cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          356 MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       356 ~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                      ++|+ .|.+.++.. ...+.   ..+..+++|+.|+++.|.-
T Consensus       198 ~~L~-~L~l~~n~l-~~~~~---~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          198 QNVS-HLILHMKQH-ILLLE---IFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             SEEE-EEEEECSCS-TTHHH---HHHHHTTTEEEEEEESCBC
T ss_pred             ccCC-eecCCCCcc-ccchh---hhhhhcccccEEECCCCcc
Confidence            8999 999987653 33333   2344578999999988763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.43  E-value=9.4e-14  Score=127.85  Aligned_cols=185  Identities=16%  Similarity=0.146  Sum_probs=96.1

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL  278 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L  278 (404)
                      +..++.+.+..+.+..+. ...+.++++|+.|.+..+.-.     .....+..+..+++|++|++++|.+..+|..+..+
T Consensus        27 ~~~l~~L~L~~n~l~~i~-~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l  100 (306)
T 2z66_A           27 PSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLS-----FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL  100 (306)
T ss_dssp             CTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCC-----EEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred             CCCCCEEECCCCccCccC-HhHhhccccCCEEECCCCccC-----cccCcccccccccccCEEECCCCccccChhhcCCC
Confidence            456677776666554322 122456777777777655410     00111222334566666666666666566556666


Q ss_pred             CCcceEecCCCCcccCCC--C-------------------CCCccccccccCceeecCCCCcccc--ccccccccccccc
Q 046301          279 KHLRYLDFSHTAIEVLPE--S-------------------KLFPDVGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRT  335 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~--~-------------------~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~  335 (404)
                      ++|++|++++|.+..++.  .                   ..|..+..+++|++|++++| .+..  +|..+..+++|++
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCE
Confidence            666666666665554442  1                   11223555666666666665 3332  5555666666666


Q ss_pred             cCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          336 LAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       336 L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      |++..+... ...+..+..+++|+ .|.+.++.-    ....+..+..+++|+.|++++|.
T Consensus       180 L~Ls~n~l~-~~~~~~~~~l~~L~-~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          180 LDLSQCQLE-QLSPTAFNSLSSLQ-VLNMSHNNF----FSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             EECTTSCCC-EECTTTTTTCTTCC-EEECTTSCC----SBCCSGGGTTCTTCCEEECTTSC
T ss_pred             EECCCCCcC-CcCHHHhcCCCCCC-EEECCCCcc----CccChhhccCcccCCEeECCCCC
Confidence            643322111 11123455666666 666665432    12222245667777777777665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.42  E-value=7.2e-13  Score=121.00  Aligned_cols=177  Identities=17%  Similarity=0.082  Sum_probs=131.0

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAE  277 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~  277 (404)
                      ++..++.|.+..+.+.... ...+.++++|+.|.+..+.-       ..+..  ...+++|++|++++|.+..+|..+..
T Consensus        29 ~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l-------~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~   98 (290)
T 1p9a_G           29 LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAEL-------TKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQT   98 (290)
T ss_dssp             CCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCC-------CEEEC--CSCCTTCCEEECCSSCCSSCCCCTTT
T ss_pred             CCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCcc-------CcccC--CCCCCcCCEEECCCCcCCcCchhhcc
Confidence            3467788888777765532 34577889999999987651       11222  26788999999999999999999999


Q ss_pred             CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccccc
Q 046301          278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLM  356 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~  356 (404)
                      +++|++|++++|+++.+|..    .+..+++|++|++++| .+..+|.+ +..+++|+.|++..+... ......+..++
T Consensus        99 l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~  172 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE  172 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCT
T ss_pred             CCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcC
Confidence            99999999999999977743    5889999999999998 67778766 688899999965433222 11112357788


Q ss_pred             ccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          357 HLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       357 ~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +|+ .|.+.++.- .    .+|..+..+.+|+.|+|+.|.
T Consensus       173 ~L~-~L~L~~N~l-~----~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          173 NLD-TLLLQENSL-Y----TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TCC-EEECCSSCC-C----CCCTTTTTTCCCSEEECCSCC
T ss_pred             CCC-EEECCCCcC-C----ccChhhcccccCCeEEeCCCC
Confidence            888 898877543 2    344556677789999998765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.42  E-value=6.5e-13  Score=120.11  Aligned_cols=173  Identities=18%  Similarity=0.237  Sum_probs=112.8

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccCC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAELK  279 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~  279 (404)
                      .++.+.+..+.+.   .++.+..+++|+.|.+.++.-       ...  ..+..+++|++|++++|.+..+|+. ++.++
T Consensus        42 ~L~~L~l~~~~i~---~~~~l~~l~~L~~L~l~~n~l-------~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  109 (272)
T 3rfs_A           42 SIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL-------HDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLT  109 (272)
T ss_dssp             TCCEEECTTSCCC---CCTTGGGCTTCCEEECTTSCC-------CCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             ceeeeeeCCCCcc---cccccccCCCCcEEECCCCCC-------CCc--hhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence            3455555444332   344566778888888876651       111  2467788888888888888766654 57788


Q ss_pred             CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccccccc
Q 046301          280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL  358 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L  358 (404)
                      +|++|++++|.+..+|..    .++.+++|++|++++| .+..+|.. ++++++|++|++..+... ......+..+++|
T Consensus       110 ~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L  183 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQL  183 (272)
T ss_dssp             TCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CCCEEECCCCcCCccCHH----HhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccC
Confidence            888888888888766543    4677888888888888 56666655 577888888855433222 1122235677778


Q ss_pred             ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          359 QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       359 ~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      + .|.+.++.-    .+..+..+..+++|+.|+++.|.
T Consensus       184 ~-~L~L~~N~l----~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          184 K-DLRLYQNQL----KSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             C-EEECCSSCC----SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             C-EEECCCCcC----CccCHHHHhCCcCCCEEEccCCC
Confidence            7 788776532    23333456777888888887664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.42  E-value=2.2e-13  Score=125.81  Aligned_cols=134  Identities=16%  Similarity=0.203  Sum_probs=65.4

Q ss_pred             hhccCccccEEEecCCCcc-ccCcccccCC-CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccc
Q 046301          251 VVPRLRQLRVVSLCGYKIV-QLPNDIAELK-HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIG  328 (404)
Q Consensus       251 ~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~-~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~  328 (404)
                      .+..+++|++|++++|.+. .+|..++.+. +|++|++++|.+..    .+|..+..+. |++|++++|......|..++
T Consensus       144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~----~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~  218 (313)
T 1ogq_A          144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG----KIPPTFANLN-LAFVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE----ECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred             HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec----cCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence            3444444444444444444 4444444444 44444444444431    1122344444 55555555522223444455


Q ss_pred             ccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          329 KLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       329 ~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      ++++|++|++..+...  ..+..+..+++|+ .|++.++.    +.+..|..+..+++|+.|+++.|.
T Consensus       219 ~l~~L~~L~L~~N~l~--~~~~~~~~l~~L~-~L~Ls~N~----l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLA--FDLGKVGLSKNLN-GLDLRNNR----IYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             TTSCCSEEECCSSEEC--CBGGGCCCCTTCC-EEECCSSC----CEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cCCCCCEEECCCCcee--eecCcccccCCCC-EEECcCCc----ccCcCChHHhcCcCCCEEECcCCc
Confidence            5566666544322211  1233355566666 66666543    223445566777777777777664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.42  E-value=4.9e-13  Score=119.45  Aligned_cols=153  Identities=20%  Similarity=0.219  Sum_probs=76.5

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAEL  278 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L  278 (404)
                      ..++.+.+..+.+.... ...+.++++|+.|.+.++.       .....+..|..+++|++|++++|.+..+|+ .+..+
T Consensus        35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  106 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-------LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL  106 (251)
T ss_dssp             TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-------CCccCHhHhccCCcCCEEECCCCcccccChhHhccc
Confidence            44555555555443322 1234455566666555543       222334445555666666666666655443 34555


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc-cccccccccccCceEeccCCcCCccccccccc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCYGLKELRSLMH  357 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~  357 (404)
                      ++|++|++++|.++.+|..    .+..+++|++|++++| .+..+|. .++.+++|++|++..+... ......+..+++
T Consensus       107 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~  180 (251)
T 3m19_A          107 TQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGK  180 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTT
T ss_pred             CCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCC
Confidence            6666666666665554432    2455666666666665 4555554 3555566666544322211 111123445555


Q ss_pred             cccceEEcCC
Q 046301          358 LQEKLTISGL  367 (404)
Q Consensus       358 L~~~L~l~~~  367 (404)
                      |+ .|.+.++
T Consensus       181 L~-~L~l~~N  189 (251)
T 3m19_A          181 LQ-TITLFGN  189 (251)
T ss_dssp             CC-EEECCSC
T ss_pred             CC-EEEeeCC
Confidence            55 5555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.42  E-value=2.5e-13  Score=140.71  Aligned_cols=163  Identities=18%  Similarity=0.179  Sum_probs=112.0

Q ss_pred             ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccccCCCcceEecCCCCcc-cCCCC-
Q 046301          221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHTAIE-VLPES-  297 (404)
Q Consensus       221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~~l~-~lp~~-  297 (404)
                      +.++++|+.|.+..+.       .....+..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|.. 
T Consensus       486 l~~l~~L~~L~L~~N~-------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNR-------LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             GGGCTTCCEEECCSSC-------CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             HhcCCCCCEEEccCCc-------cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            4445555555555443       22233445666777777777777776 66777777777777777777654 34321 


Q ss_pred             ----------------------------------------------------------------CCCccccccccCceee
Q 046301          298 ----------------------------------------------------------------KLFPDVGNLVNLRHLK  313 (404)
Q Consensus       298 ----------------------------------------------------------------~~p~~~~~l~~L~~L~  313 (404)
                                                                                      .+|..++.+++|+.|+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld  638 (768)
T 3rgz_A          559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD  638 (768)
T ss_dssp             GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred             hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence                                                                            1234456678888888


Q ss_pred             cCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEE
Q 046301          314 DSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLK  393 (404)
Q Consensus       314 l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  393 (404)
                      +++|.....+|..++++++|+.|++..+... +..+..+++|++|+ .|+++++.    +.+.+|..+.++++|+.|+++
T Consensus       639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~-~LdLs~N~----l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLN-ILDLSSNK----LDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCC-EEECCSSC----CEECCCGGGGGCCCCSEEECC
T ss_pred             CcCCcccccCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCC-EEECCCCc----ccCcCChHHhCCCCCCEEECc
Confidence            8888666688888999999998866544332 45667788888998 88888744    445667778889999999998


Q ss_pred             ecC
Q 046301          394 WVN  396 (404)
Q Consensus       394 ~~~  396 (404)
                      +|.
T Consensus       713 ~N~  715 (768)
T 3rgz_A          713 NNN  715 (768)
T ss_dssp             SSE
T ss_pred             CCc
Confidence            885

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.40  E-value=3.7e-13  Score=121.98  Aligned_cols=181  Identities=17%  Similarity=0.210  Sum_probs=105.9

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC-cccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP-NDIA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~  276 (404)
                      ++..++.+.+..+.+.... ...+.++++|+.|.+.++.       ...+.+..|.++++|++|++++|.+..++ ..+.
T Consensus        26 l~~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (276)
T ss_dssp             SCTTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CCCCccEEECCCCcccccC-HhHhccccCCcEEECCCCc-------CCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence            3456777777666554432 1245667778888776654       23344455677777777777777777554 4567


Q ss_pred             cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccc--ccccccccccccccCceEeccCC--cCCcccc
Q 046301          277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGKGN--CYGLKEL  352 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~~~~~~~--~~~~~~l  352 (404)
                      .+++|++|++++|.+..++..    .++++++|++|++++| .+..  +|..++++++|++|++..+....  ...+..+
T Consensus        98 ~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  172 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL  172 (276)
T ss_dssp             TCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred             CCccccEEECCCCCccccCch----hcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence            777777777777777665542    3666666777777666 3443  45666666666666443322111  0011111


Q ss_pred             c------------------------cccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          353 R------------------------SLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       353 ~------------------------~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      .                        ...+|+ .|.+.++.    +....+..+.++++|+.|+++.|.
T Consensus       173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~-~L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK-ELALDTNQ----LKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             HTCTTCCEEEECCSSCCCEECTTSSCSCCEE-EEECCSSC----CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             hhccccceeeecCCCcccccCccccCCCccc-EEECCCCc----eeecCHhHhcccccccEEEccCCc
Confidence            1                        122455 66665543    222233446778889999988765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.40  E-value=3.2e-12  Score=117.73  Aligned_cols=167  Identities=18%  Similarity=0.228  Sum_probs=129.3

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL  278 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L  278 (404)
                      ...++.+.+..+.+....   .+.++++|+.|.+..+.-       ...  ..+..+++|++|++++|.+..+|. +..+
T Consensus        62 l~~L~~L~L~~n~i~~~~---~~~~l~~L~~L~L~~n~l-------~~~--~~~~~l~~L~~L~l~~n~l~~~~~-l~~l  128 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPL-------KNV--SAIAGLQSIKTLDLTSTQITDVTP-LAGL  128 (308)
T ss_dssp             CTTCCEEECCSSCCCCCG---GGTTCCSCCEEECCSCCC-------SCC--GGGTTCTTCCEEECTTSCCCCCGG-GTTC
T ss_pred             cCCCCEEEccCCcCCCCh---hHccCCCCCEEEccCCcC-------CCc--hhhcCCCCCCEEECCCCCCCCchh-hcCC
Confidence            456788888777665533   377889999999987751       112  247889999999999999988876 8899


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL  358 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L  358 (404)
                      ++|++|++++|.+..++.      +..+++|++|++++| .+..+|. +.++++|+.|++..   +....+..+..+++|
T Consensus       129 ~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~---n~l~~~~~l~~l~~L  197 (308)
T 1h6u_A          129 SNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADD---NKISDISPLASLPNL  197 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS---SCCCCCGGGGGCTTC
T ss_pred             CCCCEEECCCCccCcCcc------ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCC---CccCcChhhcCCCCC
Confidence            999999999999987653      889999999999999 7778876 88899999996543   333344557888899


Q ss_pred             ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          359 QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       359 ~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      + .|.+.++.- ....     .+..+++|+.|+++.|.
T Consensus       198 ~-~L~L~~N~l-~~~~-----~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          198 I-EVHLKNNQI-SDVS-----PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             C-EEECTTSCC-CBCG-----GGTTCTTCCEEEEEEEE
T ss_pred             C-EEEccCCcc-Cccc-----cccCCCCCCEEEccCCe
Confidence            9 899987643 2222     27889999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.39  E-value=1.1e-12  Score=128.34  Aligned_cols=179  Identities=17%  Similarity=0.149  Sum_probs=121.2

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~  276 (404)
                      ++..++.+.+..+.+.... ...+.++++|+.|.+..+.       ...+.+..|.++++|++|++++|.+..+|.. +.
T Consensus        30 ~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  101 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENI-------VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT  101 (477)
T ss_dssp             CCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred             CCCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCc-------cCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence            4567888888887765532 2456788999999987765       3345566788899999999999999888765 68


Q ss_pred             cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccccccccccccCceEeccCCcCCccccccc
Q 046301          277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSL  355 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L  355 (404)
                      .+++|++|++++|.+..++.    ..+.++++|++|++++| .+..+ |..++++++|++|++..+... ......+.++
T Consensus       102 ~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l  175 (477)
T 2id5_A          102 GLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL  175 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTC
T ss_pred             CCCCCCEEECCCCccccCCh----hHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc-ccChhHhccc
Confidence            88999999999998876543    25788888888888888 44444 445888888888865433221 1112235666


Q ss_pred             cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301          356 MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       356 ~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      ++|+ .|.+.++..    ....+..+..+++|+.|+++.+
T Consensus       176 ~~L~-~L~l~~n~i----~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          176 HGLI-VLRLRHLNI----NAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             TTCC-EEEEESCCC----CEECTTCSCSCTTCCEEEEECC
T ss_pred             CCCc-EEeCCCCcC----cEeChhhcccCcccceeeCCCC
Confidence            6676 676665432    1222334555666666666544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.39  E-value=3.5e-12  Score=116.51  Aligned_cols=165  Identities=20%  Similarity=0.245  Sum_probs=122.2

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKH  280 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~  280 (404)
                      .++.+.+..+.+..   .+.+..+++|+.|.+..+.       .....+  +.++++|++|++++|.+..+|. +..+++
T Consensus        47 ~L~~L~l~~~~i~~---~~~~~~l~~L~~L~L~~n~-------l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~  113 (291)
T 1h6t_A           47 SIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNK-------LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKK  113 (291)
T ss_dssp             TCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTT
T ss_pred             cccEEEccCCCccc---ChhHhcCCCCCEEEccCCc-------cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCC
Confidence            45566665554433   3456778899999988765       222222  7889999999999999988665 889999


Q ss_pred             cceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccccc
Q 046301          281 LRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQE  360 (404)
Q Consensus       281 L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  360 (404)
                      |++|++++|.+..++      .+..+++|++|++++| .+..+ ..++.+++|++|++..+   ....+..+..+++|+ 
T Consensus       114 L~~L~L~~n~i~~~~------~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N---~l~~~~~l~~l~~L~-  181 (291)
T 1h6t_A          114 LKSLSLEHNGISDIN------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN---QISDIVPLAGLTKLQ-  181 (291)
T ss_dssp             CCEEECTTSCCCCCG------GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS---CCCCCGGGTTCTTCC-
T ss_pred             CCEEECCCCcCCCCh------hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC---ccccchhhcCCCccC-
Confidence            999999999988764      3889999999999998 67777 46888899999965433   223333478888888 


Q ss_pred             ceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          361 KLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       361 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      .|.+.++.- ..+    + .+..+++|+.|+++.|.
T Consensus       182 ~L~L~~N~i-~~l----~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          182 NLYLSKNHI-SDL----R-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             EEECCSSCC-CBC----G-GGTTCTTCSEEEEEEEE
T ss_pred             EEECCCCcC-CCC----h-hhccCCCCCEEECcCCc
Confidence            888887542 222    2 37888999999998875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.39  E-value=2.1e-12  Score=118.94  Aligned_cols=166  Identities=20%  Similarity=0.222  Sum_probs=128.2

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKH  280 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~  280 (404)
                      .++.+.+..+.+..   ++.+..+++|+.|.+..+.       .....+  +..+++|++|++++|.+..+| .+..+++
T Consensus        42 ~L~~L~l~~~~i~~---l~~~~~l~~L~~L~L~~n~-------i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~  108 (308)
T 1h6u_A           42 GITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQ-------ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQS  108 (308)
T ss_dssp             TCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred             CcCEEEeeCCCccC---chhhhccCCCCEEEccCCc-------CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence            46666665554433   4467788999999998775       222333  889999999999999999876 6899999


Q ss_pred             cceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccccc
Q 046301          281 LRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQE  360 (404)
Q Consensus       281 L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  360 (404)
                      |++|++++|.+..++.      +..+++|++|++++| .+..+|. ++.+++|+.|++..+   ....+..+..+++|+ 
T Consensus       109 L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n---~l~~~~~l~~l~~L~-  176 (308)
T 1h6u_A          109 IKTLDLTSTQITDVTP------LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA---QVSDLTPLANLSKLT-  176 (308)
T ss_dssp             CCEEECTTSCCCCCGG------GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS---CCCCCGGGTTCTTCC-
T ss_pred             CCEEECCCCCCCCchh------hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC---cCCCChhhcCCCCCC-
Confidence            9999999999987652      899999999999999 7788876 888999999965433   333344588889999 


Q ss_pred             ceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          361 KLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       361 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                      .|.+.++.- ...+.     +..+++|+.|+++.|.-
T Consensus       177 ~L~l~~n~l-~~~~~-----l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          177 TLKADDNKI-SDISP-----LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             EEECCSSCC-CCCGG-----GGGCTTCCEEECTTSCC
T ss_pred             EEECCCCcc-CcChh-----hcCCCCCCEEEccCCcc
Confidence            999987643 23222     77889999999988763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.38  E-value=4.4e-13  Score=125.94  Aligned_cols=156  Identities=17%  Similarity=0.133  Sum_probs=124.6

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.|+.|.+.++.       ...++...+.++++|++|++++|.+..++ ..+..+++|++|++++|.++.+|..    .+
T Consensus        52 ~~L~~L~l~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~  120 (353)
T 2z80_A           52 EAVKSLDLSNNR-------ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS----WF  120 (353)
T ss_dssp             TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH----HH
T ss_pred             ccCcEEECCCCc-------CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh----Hh
Confidence            589999998765       33455667899999999999999999764 5699999999999999999976642    48


Q ss_pred             cccccCceeecCCCCccccccc--cccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccc
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL  381 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l  381 (404)
                      +++++|++|++++| .+..+|.  .++++++|++|++..+..........+..+++|+ .|.+.++.    +....+..+
T Consensus       121 ~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~~l  194 (353)
T 2z80_A          121 KPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE-ELEIDASD----LQSYEPKSL  194 (353)
T ss_dssp             TTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETT----CCEECTTTT
T ss_pred             CCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC-EEECCCCC----cCccCHHHH
Confidence            89999999999999 7888987  5899999999977654322222335678888999 99998754    234456678


Q ss_pred             cCccCCCceEEEecCC
Q 046301          382 NGKEKLEALSLKWVNS  397 (404)
Q Consensus       382 ~~l~~L~~L~l~~~~~  397 (404)
                      .++++|+.|+++.|.-
T Consensus       195 ~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          195 KSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TTCSEEEEEEEECSCS
T ss_pred             hccccCCeecCCCCcc
Confidence            8999999999998863

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.37  E-value=1e-12  Score=130.82  Aligned_cols=182  Identities=19%  Similarity=0.197  Sum_probs=139.9

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-ccc
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAE  277 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~  277 (404)
                      +..++.+.+..+.+.... ...+.++++|++|.+..+.       ....++..|.++++|++|++++|.+..+|+. ++.
T Consensus        25 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   96 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSR-------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP   96 (549)
T ss_dssp             CTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred             CCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCC-------cCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence            467888998888765532 3467889999999998876       3455667789999999999999999988776 999


Q ss_pred             CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc-cccccccccccCceEeccCCcCCcccccccc
Q 046301          278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCYGLKELRSLM  356 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~  356 (404)
                      +++|++|++++|.+..++   .|..++++++|++|++++|..+..+|. .++++++|++|++..+... ...+..+.+++
T Consensus        97 l~~L~~L~Ls~n~l~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~  172 (549)
T 2z81_A           97 LSSLKYLNLMGNPYQTLG---VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIR  172 (549)
T ss_dssp             CTTCCEEECTTCCCSSSC---SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTCS
T ss_pred             CCCCcEEECCCCcccccc---hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-ccChhhhhccc
Confidence            999999999999998553   234599999999999999966788874 6999999999977654332 23455678888


Q ss_pred             ccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          357 HLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       357 ~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                      +|+ .|.+.++.. ...+..   .+..+++|+.|+++.|.-
T Consensus       173 ~L~-~L~l~~n~~-~~~~~~---~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          173 DIH-HLTLHLSES-AFLLEI---FADILSSVRYLELRDTNL  208 (549)
T ss_dssp             EEE-EEEEECSBS-TTHHHH---HHHSTTTBSEEEEESCBC
T ss_pred             cCc-eEecccCcc-cccchh---hHhhcccccEEEccCCcc
Confidence            888 888877553 233332   234578889999987753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.37  E-value=1.7e-12  Score=118.45  Aligned_cols=153  Identities=22%  Similarity=0.168  Sum_probs=120.0

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCcccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVG  304 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~  304 (404)
                      +.++.|.+.++.       .....+..|.++++|++|++++|.+..+|.. +.+++|++|++++|.+..+|..     +.
T Consensus        31 ~~l~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-----~~   97 (290)
T 1p9a_G           31 KDTTILHLSENL-------LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLL-----GQ   97 (290)
T ss_dssp             TTCCEEECTTSC-------CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCC-----TT
T ss_pred             CCCCEEEcCCCc-------CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchh-----hc
Confidence            678899888766       3445567789999999999999999988775 7899999999999999977754     89


Q ss_pred             ccccCceeecCCCCccccccc-cccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccC
Q 046301          305 NLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNG  383 (404)
Q Consensus       305 ~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~  383 (404)
                      .+++|++|++++| .+..+|. .+.++++|++|++..+... ......+..+++|+ .|.+.++.- .   ...+..+.+
T Consensus        98 ~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~l-~---~l~~~~~~~  170 (290)
T 1p9a_G           98 TLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLE-KLSLANNNL-T---ELPAGLLNG  170 (290)
T ss_dssp             TCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC-EEECTTSCC-S---CCCTTTTTT
T ss_pred             cCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCC-EEECCCCcC-C---ccCHHHhcC
Confidence            9999999999999 7788875 4899999999965433222 11223467888999 999987542 2   333345678


Q ss_pred             ccCCCceEEEecCC
Q 046301          384 KEKLEALSLKWVNS  397 (404)
Q Consensus       384 l~~L~~L~l~~~~~  397 (404)
                      +++|+.|+|+.|.-
T Consensus       171 l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          171 LENLDTLLLQENSL  184 (290)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             cCCCCEEECCCCcC
Confidence            99999999988863

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.36  E-value=4.8e-12  Score=113.80  Aligned_cols=148  Identities=17%  Similarity=0.183  Sum_probs=108.1

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKL  299 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~  299 (404)
                      .+..+++|+.|.+.++.       ...+.  .+..+++|++|++++|.+..+|+ +..+++|++|++++|.++.+|.   
T Consensus        36 ~~~~l~~L~~L~l~~n~-------i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~---  102 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSN-------IQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG---  102 (263)
T ss_dssp             CHHHHTTCSEEECTTSC-------CCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTT---
T ss_pred             chhhcCcCcEEECcCCC-------cccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCc---
Confidence            45567888888887765       11222  47778889999999998888877 8888899999999998887764   


Q ss_pred             CccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhc
Q 046301          300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEA  379 (404)
Q Consensus       300 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~  379 (404)
                         +.. ++|++|++++| .+..+| .++++++|++|++.   .+....+..+..+++|+ .|.+.++.- ...     .
T Consensus       103 ---~~~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls---~N~i~~~~~l~~l~~L~-~L~L~~N~i-~~~-----~  166 (263)
T 1xeu_A          103 ---IPS-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIR---NNKLKSIVMLGFLSKLE-VLDLHGNEI-TNT-----G  166 (263)
T ss_dssp             ---CCC-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECT---TSCCCBCGGGGGCTTCC-EEECTTSCC-CBC-----T
T ss_pred             ---ccc-CcccEEEccCC-ccCCCh-hhcCcccccEEECC---CCcCCCChHHccCCCCC-EEECCCCcC-cch-----H
Confidence               223 88899999888 677776 58888888888543   33333445677788888 888877543 222     4


Q ss_pred             cccCccCCCceEEEecC
Q 046301          380 QLNGKEKLEALSLKWVN  396 (404)
Q Consensus       380 ~l~~l~~L~~L~l~~~~  396 (404)
                      .+..+++|+.|+++.|.
T Consensus       167 ~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TSTTCCCCCEEEEEEEE
T ss_pred             HhccCCCCCEEeCCCCc
Confidence            57788889999988775

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.36  E-value=3e-12  Score=114.32  Aligned_cols=154  Identities=18%  Similarity=0.170  Sum_probs=119.5

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+..+.       .....+..|.++++|++|++++|.+..+++ .+..+++|++|++++|.+..+|..    .+
T Consensus        35 ~~l~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~  103 (251)
T 3m19_A           35 ADTEKLDLQSTG-------LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG----VF  103 (251)
T ss_dssp             TTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----TT
T ss_pred             CCCCEEEccCCC-------cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh----Hh
Confidence            578889888766       344556678899999999999999987655 478999999999999999977743    57


Q ss_pred             cccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcccc
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  382 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~  382 (404)
                      ..+++|++|++++| .+..+|.. +.++++|++|++..+... ......+..+++|+ .|.+.++.-    ....+..+.
T Consensus       104 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~-~L~L~~N~l----~~~~~~~~~  176 (251)
T 3m19_A          104 DHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ-TLSLSTNQL----QSVPHGAFD  176 (251)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSCC----SCCCTTTTT
T ss_pred             cccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCC-EEECCCCcC----CccCHHHHh
Confidence            89999999999999 78888876 688999999966543322 11223578888999 999987542    233345678


Q ss_pred             CccCCCceEEEecC
Q 046301          383 GKEKLEALSLKWVN  396 (404)
Q Consensus       383 ~l~~L~~L~l~~~~  396 (404)
                      .+++|+.|+++.|.
T Consensus       177 ~l~~L~~L~l~~N~  190 (251)
T 3m19_A          177 RLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCTTCCEEECCSCC
T ss_pred             CCCCCCEEEeeCCc
Confidence            88999999998876

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.35  E-value=2.3e-12  Score=116.39  Aligned_cols=154  Identities=23%  Similarity=0.248  Sum_probs=119.9

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccc-ccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+..+.       ...+++..|.++++|++|++++|.+..+|..+ ..+++|++|++++|.+..+|..    .+
T Consensus        37 ~~l~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~  105 (270)
T 2o6q_A           37 ADTKKLDLQSNK-------LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG----VF  105 (270)
T ss_dssp             TTCSEEECCSSC-------CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT----TT
T ss_pred             CCCCEEECcCCC-------CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh----Hc
Confidence            578999887765       33455667899999999999999999888765 7899999999999999987753    57


Q ss_pred             cccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcccc
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  382 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~  382 (404)
                      ..+++|++|++++| .+..+|.. ++.+++|++|++..+... ......+..+++|+ .|.+.++.-    ....+..+.
T Consensus       106 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~-~L~L~~n~l----~~~~~~~~~  178 (270)
T 2o6q_A          106 DQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK-ELRLYNNQL----KRVPEGAFD  178 (270)
T ss_dssp             TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSCC----SCCCTTTTT
T ss_pred             ccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccc-eeEecCCcC----cEeChhHhc
Confidence            89999999999999 67777654 789999999966543322 11222377889999 999987542    233334578


Q ss_pred             CccCCCceEEEecC
Q 046301          383 GKEKLEALSLKWVN  396 (404)
Q Consensus       383 ~l~~L~~L~l~~~~  396 (404)
                      ++++|+.|+++.|.
T Consensus       179 ~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          179 KLTELKTLKLDNNQ  192 (270)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             cCCCcCEEECCCCc
Confidence            89999999999885

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.35  E-value=9.6e-13  Score=119.02  Aligned_cols=153  Identities=22%  Similarity=0.292  Sum_probs=120.0

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-ccc
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAE  277 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~  277 (404)
                      ...++.+.+..+.+..   ++.+.++++|+.|.+.++.       ....++..+.++++|++|++++|.+..+|+. ++.
T Consensus        62 l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  131 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD---ISALKELTNLTYLILTGNQ-------LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK  131 (272)
T ss_dssp             CTTCCEEECTTSCCCC---CGGGTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCCCcEEECCCCCCCC---chhhcCCCCCCEEECCCCc-------cCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence            4567888887776654   3567789999999998875       3455666788999999999999999987765 789


Q ss_pred             CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccccc
Q 046301          278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLM  356 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~  356 (404)
                      +++|++|++++|.+..+|..    .++.+++|++|++++| .+..+|.. ++++++|++|++..+... ......+..++
T Consensus       132 l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~  205 (272)
T 3rfs_A          132 LTNLTYLNLAHNQLQSLPKG----VFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT  205 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred             CCCCCEEECCCCccCccCHH----HhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCc
Confidence            99999999999999977653    4689999999999999 67777765 689999999966544332 22223478888


Q ss_pred             ccccceEEcCCC
Q 046301          357 HLQEKLTISGLE  368 (404)
Q Consensus       357 ~L~~~L~l~~~~  368 (404)
                      +|+ .|.+.++.
T Consensus       206 ~L~-~L~l~~N~  216 (272)
T 3rfs_A          206 SLQ-YIWLHDNP  216 (272)
T ss_dssp             TCC-EEECCSSC
T ss_pred             CCC-EEEccCCC
Confidence            999 89988754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.35  E-value=1.7e-12  Score=123.63  Aligned_cols=126  Identities=17%  Similarity=0.128  Sum_probs=69.2

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAEL  278 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L  278 (404)
                      ..++.+.+..+.+..+.. ..+.++++|+.|.+.++.       ...+++..|..+++|++|++++|.+..+|+ .++.+
T Consensus        45 ~~l~~l~l~~~~l~~l~~-~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQ-------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             CCCSEEEEESCEESEECT-HHHHHCCCCSEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCceEEEecCCchhhCCh-hHhcccccCcEEECCCCc-------ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            455666666554433221 123456667777666544       223334456666666666666666665533 35666


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-ccccccccccccCc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAK  338 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~  338 (404)
                      ++|++|++++|.+..+|..    .+.++++|++|++++| .+..++ ..++++++|++|++
T Consensus       117 ~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l  172 (390)
T 3o6n_A          117 PLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQL  172 (390)
T ss_dssp             TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEEC
Confidence            6666666666666655533    2355666666666665 344443 23555556655543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.34  E-value=1.4e-12  Score=131.43  Aligned_cols=131  Identities=17%  Similarity=0.210  Sum_probs=106.8

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-Ccccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~  276 (404)
                      ++..++.+.+..+.+.... ...+.++++|+.|.+..+.       ...+.+..|.++++|++|++++|.+..+ |..++
T Consensus        30 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  101 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCE-------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS  101 (606)
T ss_dssp             SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred             CCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCc-------ccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence            4567888988887765533 2357789999999998765       3455667789999999999999999876 78899


Q ss_pred             cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc--cccccccccccccccCceEe
Q 046301          277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE--EMPLRIGKLTSLRTLAKFVV  341 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~~~~~  341 (404)
                      .+++|++|++++|.+..++..    .++++++|++|++++| .+.  .+|..++++++|++|++..+
T Consensus       102 ~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          102 GLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             TCTTCCEEECTTSCCCCSSSS----CCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             CcccCCEEEccCCcccccccc----ccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC
Confidence            999999999999999877743    4899999999999998 454  57888999999999966543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.34  E-value=1.5e-12  Score=126.53  Aligned_cols=175  Identities=19%  Similarity=0.194  Sum_probs=88.9

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-c-----
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-D-----  274 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~-----  274 (404)
                      .++.|.+..+.+..+. ...+.++++|+.|.+..+.       ...+++..|..+++|++|++++|.+..+|. .     
T Consensus       100 ~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  171 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW-------LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP  171 (452)
T ss_dssp             TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-------CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             CCCEEECCCCccCCcC-hhhccCcccCCEEECCCCc-------CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence            4455555554443321 1234455555555555443       223333445555555555555555554433 2     


Q ss_pred             --------------------cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccccccccc
Q 046301          275 --------------------IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSL  333 (404)
Q Consensus       275 --------------------~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L  333 (404)
                                          +..+++|++|++++|.+..+|      .+..+++|++|++++| .+..+ |..+.++++|
T Consensus       172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L  244 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSL  244 (452)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEECTTS-CCSEECGGGGTTCTTC
T ss_pred             cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc------cccccccccEEECcCC-cCcccCcccccCccCC
Confidence                                445555555555555555443      2556666666666666 33333 4446666666


Q ss_pred             cccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +.|.+..+... ......+..+++|+ .|++.++.-    ....+..+..+++|+.|+|+.|.
T Consensus       245 ~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          245 KKLWVMNSQVS-LIERNAFDGLASLV-ELNLAHNNL----SSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CEEECTTSCCC-EECTTTTTTCTTCC-EEECCSSCC----SCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCcCc-eECHHHhcCCCCCC-EEECCCCcC----CccChHHhccccCCCEEEccCCC
Confidence            66644322111 11223455666666 677765422    22223445666777777776554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.34  E-value=1.8e-12  Score=134.34  Aligned_cols=43  Identities=19%  Similarity=0.148  Sum_probs=26.4

Q ss_pred             ccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          349 LKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       349 ~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +.++++++.|+ .|.++++.    +.+.+|..+.++++|+.|+|++|.
T Consensus       649 p~~l~~l~~L~-~L~Ls~N~----l~g~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          649 PKEIGSMPYLF-ILNLGHND----ISGSIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             CGGGGGCTTCC-EEECCSSC----CCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             CHHHhccccCC-EEeCcCCc----cCCCCChHHhCCCCCCEEECCCCc
Confidence            34556666666 66665533    334455567777777777777765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.34  E-value=3.7e-12  Score=109.29  Aligned_cols=130  Identities=17%  Similarity=0.170  Sum_probs=71.5

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCccc-CCCCCCCccccccccCceeecCCCCcccccccccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEV-LPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKL  330 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~-lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l  330 (404)
                      +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .|.     .++.+++|++|++++|......|..++++
T Consensus        62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~-----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l  135 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIP-----NLSGLTSLTLLDISHSAHDDSILTKINTL  135 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSC-----CCTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred             HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccCh-----hhcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence            555666666666666554443 46666666666666666653 222     36666666666666663222345556666


Q ss_pred             ccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          331 TSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       331 ~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      ++|++|++..+..  ...++.+..+++|+ .|.+.++.- ..++     .+..+++|+.|+++.|.
T Consensus       136 ~~L~~L~L~~n~~--i~~~~~l~~l~~L~-~L~l~~n~i-~~~~-----~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          136 PKVNSIDLSYNGA--ITDIMPLKTLPELK-SLNIQFDGV-HDYR-----GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             SSCCEEECCSCTB--CCCCGGGGGCSSCC-EEECTTBCC-CCCT-----TGGGCSSCCEEEECBC-
T ss_pred             CCCCEEEccCCCC--ccccHhhcCCCCCC-EEECCCCCC-cChH-----HhccCCCCCEEEeeCcc
Confidence            6666664432220  22233555666666 666655432 2211     35566777777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=1.9e-12  Score=125.38  Aligned_cols=133  Identities=19%  Similarity=0.247  Sum_probs=71.1

Q ss_pred             hhccCccccEEEecCCC-ccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccc
Q 046301          251 VVPRLRQLRVVSLCGYK-IVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRI  327 (404)
Q Consensus       251 ~~~~l~~L~~L~l~~~~-~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~  327 (404)
                      .|.++++|++|++++|. +..+|. .+..+++|++|++++|.++.+|.      +..+++|++|++++| .+..+ |..+
T Consensus       155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~  227 (440)
T 3zyj_A          155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN------LTPLIKLDELDLSGN-HLSAIRPGSF  227 (440)
T ss_dssp             TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC------CTTCSSCCEEECTTS-CCCEECTTTT
T ss_pred             HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc------cCCCcccCEEECCCC-ccCccChhhh
Confidence            34444444444444422 333332 34555566666666666555542      566666777777666 44444 4456


Q ss_pred             cccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          328 GKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       328 ~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      .++++|+.|.+..+... ......+..+++|+ .|++.++.-    ....+..+..+++|+.|+|+.|.
T Consensus       228 ~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~L~~N~l----~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          228 QGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV-EINLAHNNL----TLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTCTTCCEEECTTCCCC-EECTTSSTTCTTCC-EEECTTSCC----CCCCTTTTSSCTTCCEEECCSSC
T ss_pred             ccCccCCEEECCCCcee-EEChhhhcCCCCCC-EEECCCCCC----CccChhHhccccCCCEEEcCCCC
Confidence            66666666644322211 11223456667777 777766432    22233446667778888777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.33  E-value=1.9e-12  Score=131.25  Aligned_cols=139  Identities=12%  Similarity=0.072  Sum_probs=71.3

Q ss_pred             cCccccEEEecCCCccccCcccc-cCCCcceEecCCCCcccCCCCCCCc---cccccccCceeecCCCCcccccccccc-
Q 046301          254 RLRQLRVVSLCGYKIVQLPNDIA-ELKHLRYLDFSHTAIEVLPESKLFP---DVGNLVNLRHLKDSHSNLLEEMPLRIG-  328 (404)
Q Consensus       254 ~l~~L~~L~l~~~~~~~lp~~~~-~L~~L~~L~l~~~~l~~lp~~~~p~---~~~~l~~L~~L~l~~~~~l~~lp~~~~-  328 (404)
                      .+.+|++|++++|.+..+|..+. .+++|++|++++|.+..+|......   .+.++++|++|++++| .+..+|..+. 
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~  509 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRA  509 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGST
T ss_pred             cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhh
Confidence            44566666666666666665543 3666666666666666555431110   0122236666666665 4556665554 


Q ss_pred             -ccccccccCceEeccCCcCCccccccccccccceEEcCCC--CCCCHhHHHhccccCccCCCceEEEecC
Q 046301          329 -KLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE--NVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       329 -~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                       .+++|+.|++..+....  .+..+.++++|+ .|.++++.  ..+.+.+.+|..+..+++|+.|+|+.|.
T Consensus       510 ~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~-~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSK--FPTQPLNSSTLK-GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND  577 (636)
T ss_dssp             TTCTTCCEEECCSSCCSS--CCCGGGGCSSCC-EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             ccCCCcCEEECCCCCCCC--cChhhhcCCCCC-EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence             56666666443322221  234455555565 56554432  1122233344455556666666665554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.32  E-value=9.8e-13  Score=109.86  Aligned_cols=138  Identities=18%  Similarity=0.161  Sum_probs=87.6

Q ss_pred             CccccEEEecCCCcc--ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccc-ccccccccc
Q 046301          255 LRQLRVVSLCGYKIV--QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEE-MPLRIGKLT  331 (404)
Q Consensus       255 l~~L~~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~-lp~~~~~l~  331 (404)
                      .++|+.|++++|.+.  .+|..+..+++|++|++++|.+..+ .     .+..+++|++|++++| .+.. +|..+++++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~   95 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-----NLPKLPKLKKLELSEN-RIFGGLDMLAEKLP   95 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-----SCCCCSSCCEEEEESC-CCCSCCCHHHHHCT
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-----hhccCCCCCEEECcCC-cCchHHHHHHhhCC
Confidence            366777777777776  6777777777777777777777755 2     3777777777777777 4444 565566677


Q ss_pred             cccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCCCCCC
Q 046301          332 SLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNSTTSS  401 (404)
Q Consensus       332 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  401 (404)
                      +|++|++..+.......+..+..+++|+ .|.+.++.- ...+......+..+++|+.|+++.+......
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~-~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLK-SLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCC-EEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCC-EEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            7777755433322211224566777777 777766432 1222212235777888888888888654443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.31  E-value=1.3e-12  Score=132.22  Aligned_cols=130  Identities=18%  Similarity=0.209  Sum_probs=93.4

Q ss_pred             ccCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-c
Q 046301          197 RFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-I  275 (404)
Q Consensus       197 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~  275 (404)
                      .+|.+++.|.+..+.+..+. ...+.++++|+.|.+..+.       ...+++..|.++++|++|+|++|+++.+|+. +
T Consensus        49 ~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-------i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f  120 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF  120 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred             CCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-------CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence            34567788888777665533 2356778888888887765       3445566778888888888888888877754 6


Q ss_pred             ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc--cccccccccccccccCce
Q 046301          276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE--EMPLRIGKLTSLRTLAKF  339 (404)
Q Consensus       276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~~~  339 (404)
                      ..|++|++|++++|+++.+|..    .++++++|++|++++| .+.  .+|..++++++|++|++.
T Consensus       121 ~~L~~L~~L~Ls~N~l~~l~~~----~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECC
T ss_pred             cCCCCCCEEECCCCcCCCCChh----hhhcCcccCeeccccC-ccccCCCchhhccchhhhhhccc
Confidence            7788888888888888776643    4778888888888887 444  346667778888888554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.31  E-value=1.9e-12  Score=117.17  Aligned_cols=131  Identities=18%  Similarity=0.155  Sum_probs=103.9

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+.++.       ...+.+..|.++++|++|++++|.+..+++ .+..+++|++|++++|.+..++..    .+
T Consensus        28 ~~l~~L~ls~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~   96 (276)
T 2z62_A           28 FSTKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AF   96 (276)
T ss_dssp             TTCCEEECTTCC-------CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT----TT
T ss_pred             CCccEEECCCCc-------ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh----hh
Confidence            468999987765       334455578899999999999999997765 789999999999999999877632    58


Q ss_pred             cccccCceeecCCCCccccccc-cccccccccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE  368 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~  368 (404)
                      .++++|++|++++| .+..++. .++++++|++|++..+.......+..+..+++|+ .|.+.++.
T Consensus        97 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~-~L~Ls~N~  160 (276)
T 2z62_A           97 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSNK  160 (276)
T ss_dssp             TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSSC
T ss_pred             cCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCC-EEECCCCC
Confidence            99999999999999 6666665 5999999999966544332222356788899999 89988754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.31  E-value=4e-12  Score=118.22  Aligned_cols=84  Identities=17%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL  278 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L  278 (404)
                      +..++.+.+..+.+.... ...+.++++|+.|.+..+.       .....+..|.++++|++|++++|.+..+|..+.  
T Consensus        51 ~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--  120 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNK-------ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--  120 (330)
T ss_dssp             CTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC-------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--
T ss_pred             CCCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCc-------CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--
Confidence            345666766666554432 1245667777777776654       223345556777777777777777666665443  


Q ss_pred             CCcceEecCCCCcc
Q 046301          279 KHLRYLDFSHTAIE  292 (404)
Q Consensus       279 ~~L~~L~l~~~~l~  292 (404)
                      ++|++|++++|.+.
T Consensus       121 ~~L~~L~l~~n~l~  134 (330)
T 1xku_A          121 KTLQELRVHENEIT  134 (330)
T ss_dssp             TTCCEEECCSSCCC
T ss_pred             ccccEEECCCCccc
Confidence            34444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=5.8e-12  Score=126.78  Aligned_cols=86  Identities=19%  Similarity=0.226  Sum_probs=40.0

Q ss_pred             ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccc-ccCCCcceEecCCCCcccCCCCCC
Q 046301          221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDI-AELKHLRYLDFSHTAIEVLPESKL  299 (404)
Q Consensus       221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~L~~L~~L~l~~~~l~~lp~~~~  299 (404)
                      +..+++|+.|.+..+.       ....++..|.++++|++|++++|.+..+|+.+ +.+++|++|++++|.+..++.   
T Consensus        95 ~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~---  164 (597)
T 3oja_B           95 FAYAHTIQKLYMGFNA-------IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED---  164 (597)
T ss_dssp             TTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT---
T ss_pred             hcCCCCCCEEECCCCc-------CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh---
Confidence            3444455555544433       22233334445555555555555555444442 445555555555555443332   


Q ss_pred             CccccccccCceeecCCC
Q 046301          300 FPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       300 p~~~~~l~~L~~L~l~~~  317 (404)
                       ..++++++|++|++++|
T Consensus       165 -~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          165 -DTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             -TTTTTCTTCCEEECTTS
T ss_pred             -hhhhcCCcCcEEECcCC
Confidence             13444555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.30  E-value=4.9e-12  Score=111.99  Aligned_cols=180  Identities=11%  Similarity=0.167  Sum_probs=119.0

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecC-CCccccCc-cc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCG-YKIVQLPN-DI  275 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~-~~  275 (404)
                      ++..++.+.+..+.+..+.. ..+.++++|+.|.+..+.      ....+.+..|.++++|++|++++ |.+..+|+ .+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~------~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDV------TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCS------SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CCCcccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCC------CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            45578888888877665432 346678888888887763      12344455678888888888888 88887764 57


Q ss_pred             ccCCCcceEecCCCCcccCCCCCCCccccccccCc---eeecCCCCcccccccc-cccccccc-ccCceEeccCCcCCcc
Q 046301          276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLR---HLKDSHSNLLEEMPLR-IGKLTSLR-TLAKFVVGKGNCYGLK  350 (404)
Q Consensus       276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~---~L~l~~~~~l~~lp~~-~~~l~~L~-~L~~~~~~~~~~~~~~  350 (404)
                      ..+++|++|++++|.++.+|.      +..+++|+   +|++++|..+..+|.. +.++++|+ +|++..+...  ....
T Consensus       102 ~~l~~L~~L~l~~n~l~~lp~------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~  173 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKMFPD------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQG  173 (239)
T ss_dssp             ECCTTCCEEEEEEECCCSCCC------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECT
T ss_pred             CCCCCCCEEeCCCCCCccccc------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCH
Confidence            788888888888888886653      66667776   8888887567777654 77888888 8754322211  1111


Q ss_pred             ccccccccccceEEcCCCCCCCHhHHHhccccCc-cCCCceEEEecC
Q 046301          351 ELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGK-EKLEALSLKWVN  396 (404)
Q Consensus       351 ~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~  396 (404)
                      ..-..++|+ .|.+.++.++.   ...+..+.++ ++|+.|+++.|.
T Consensus       174 ~~~~~~~L~-~L~L~~n~~l~---~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          174 YAFNGTKLD-AVYLNKNKYLT---VIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             TTTTTCEEE-EEECTTCTTCC---EECTTTTTTCSBCCSEEECTTCC
T ss_pred             hhcCCCCCC-EEEcCCCCCcc---cCCHHHhhccccCCcEEECCCCc
Confidence            111225677 77777653232   2223456677 788888887765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.30  E-value=1.7e-12  Score=129.22  Aligned_cols=155  Identities=18%  Similarity=0.167  Sum_probs=123.9

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.|+.|.+.++.       .....+..|.++++|++|++++|.+..+| ..++.+++|++|++++|.+..+|.    ..+
T Consensus        26 ~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~   94 (549)
T 2z81_A           26 AAMKSLDLSFNK-------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS----SWF   94 (549)
T ss_dssp             TTCCEEECCSSC-------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH----HHH
T ss_pred             CCccEEECcCCc-------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH----HHh
Confidence            689999998875       33445567899999999999999998765 679999999999999999987653    259


Q ss_pred             cccccCceeecCCCCccc--cccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccc
Q 046301          304 GNLVNLRHLKDSHSNLLE--EMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL  381 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l  381 (404)
                      +++++|++|++++| .+.  ..|..++++++|++|++..+..........+..+++|+ .|.+.++.    +....+..+
T Consensus        95 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~l  168 (549)
T 2z81_A           95 GPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALS----LRNYQSQSL  168 (549)
T ss_dssp             TTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETT----CCEECTTTT
T ss_pred             ccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCCc----ccccChhhh
Confidence            99999999999999 566  45677999999999977655422222234678889999 99998754    334456778


Q ss_pred             cCccCCCceEEEecC
Q 046301          382 NGKEKLEALSLKWVN  396 (404)
Q Consensus       382 ~~l~~L~~L~l~~~~  396 (404)
                      ..+++|+.|+++++.
T Consensus       169 ~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          169 KSIRDIHHLTLHLSE  183 (549)
T ss_dssp             TTCSEEEEEEEECSB
T ss_pred             hccccCceEecccCc
Confidence            899999999998875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.30  E-value=8.1e-12  Score=125.24  Aligned_cols=164  Identities=21%  Similarity=0.238  Sum_probs=114.8

Q ss_pred             cceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCc
Q 046301          202 LRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHL  281 (404)
Q Consensus       202 ~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L  281 (404)
                      ++.|.+..+.+..   ++.+..+++|+.|.+..+.       ...+++  +..+++|+.|+|++|.+..+| .+..+++|
T Consensus        45 L~~L~l~~n~i~~---l~~l~~l~~L~~L~Ls~N~-------l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L  111 (605)
T 1m9s_A           45 IDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNK-------LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKL  111 (605)
T ss_dssp             CCCCBCTTCCCCC---CTTGGGCTTCCEEECTTSC-------CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred             CCEEECcCCCCCC---ChHHccCCCCCEEEeeCCC-------CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence            4444444443332   3456778888888887765       222222  778888999999988888766 68888889


Q ss_pred             ceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccc
Q 046301          282 RYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEK  361 (404)
Q Consensus       282 ~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~  361 (404)
                      +.|+|++|.+..++      .+..+++|+.|+|++| .+..+ ..++.+++|+.|++..+..   ..+..+..+++|+ .
T Consensus       112 ~~L~Ls~N~l~~l~------~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l---~~~~~l~~l~~L~-~  179 (605)
T 1m9s_A          112 KSLSLEHNGISDIN------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQ-N  179 (605)
T ss_dssp             CEEECTTSCCCCCG------GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSCC---CCCGGGTTCTTCC-E
T ss_pred             CEEEecCCCCCCCc------cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCcC---CCchhhccCCCCC-E
Confidence            99999988888654      3888888999999888 66776 4588888888886543322   2333377888888 8


Q ss_pred             eEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          362 LTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       362 L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      |.+.++.- ..+     ..+..+++|+.|+|+.|.
T Consensus       180 L~Ls~N~i-~~l-----~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          180 LYLSKNHI-SDL-----RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EECCSSCC-CBC-----GGGTTCTTCSEEECCSEE
T ss_pred             EECcCCCC-CCC-----hHHccCCCCCEEEccCCc
Confidence            88877542 222     247788888888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.30  E-value=8.8e-12  Score=115.99  Aligned_cols=105  Identities=13%  Similarity=0.237  Sum_probs=60.4

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL  278 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L  278 (404)
                      +..++.+.+..+.+.... ...+.++++|+.|.+..+.       .....+..|.++++|++|++++|.+..+|..+.  
T Consensus        53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--  122 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-------ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--  122 (332)
T ss_dssp             CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-------CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--
T ss_pred             CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-------cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--
Confidence            345667777666554322 2345677777777776654       233445567777777777777777776666554  


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~  317 (404)
                      ++|++|++++|.+..+|..    .+.++++|++|++++|
T Consensus       123 ~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSG----GGSSCSSCCEEECCSC
T ss_pred             ccCCEEECCCCccCccCHh----HhCCCccCCEEECCCC
Confidence            5566666666655544432    2334444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.29  E-value=7e-12  Score=110.27  Aligned_cols=129  Identities=23%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.|+.|.+.++.       ...+.+..|..+++|++|++++|.+..+|.. +..+++|++|++++|.++.+|..    .+
T Consensus        40 ~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~~  108 (229)
T 3e6j_A           40 TNAQILYLHDNQ-------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA----VF  108 (229)
T ss_dssp             TTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TT
T ss_pred             CCCCEEEcCCCc-------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh----Hh
Confidence            455555555543       2233344455566666666666666655533 35566666666666666554432    24


Q ss_pred             cccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCC
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGL  367 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~  367 (404)
                      ..+++|++|++++| .+..+|..+.++++|++|++..+.... .....+..+++|+ .|.+.++
T Consensus       109 ~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~-~L~l~~N  169 (229)
T 3e6j_A          109 DRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLT-HAYLFGN  169 (229)
T ss_dssp             TTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCC-EEECTTS
T ss_pred             CcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCC-EEEeeCC
Confidence            55666666666665 455666556666666666443222111 1112345555555 5555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=2.3e-12  Score=133.93  Aligned_cols=104  Identities=17%  Similarity=0.225  Sum_probs=50.9

Q ss_pred             CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-cc--ccCcccccCC-------CcceEecCCCCcc
Q 046301          223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IV--QLPNDIAELK-------HLRYLDFSHTAIE  292 (404)
Q Consensus       223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~--~lp~~~~~L~-------~L~~L~l~~~~l~  292 (404)
                      ++++|+.|.+..+.       .....+..+.++++|++|++++|. +.  .+|..++.+.       +|++|++++|.+.
T Consensus       489 ~L~~L~~L~Ls~N~-------l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          489 NLKDLTDVELYNCP-------NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             GCTTCCEEEEESCT-------TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             cCCCCCEEECcCCC-------CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            56666666665543       112223445555555555555554 44  2454444443       5555555555555


Q ss_pred             cCCCCCCCccccccccCceeecCCCCccccccccccccccccccCc
Q 046301          293 VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK  338 (404)
Q Consensus       293 ~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~  338 (404)
                      .+|..   ..++++++|++|++++| .+..+| .++++++|+.|++
T Consensus       562 ~ip~~---~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~L  602 (876)
T 4ecn_A          562 EFPAS---ASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKL  602 (876)
T ss_dssp             BCCCH---HHHTTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEEC
T ss_pred             ccCCh---hhhhcCCCCCEEECCCC-Ccccch-hhcCCCcceEEEC
Confidence            44430   02555555555555555 333555 4555555555533

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.29  E-value=1.1e-11  Score=113.21  Aligned_cols=149  Identities=19%  Similarity=0.255  Sum_probs=118.7

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKL  299 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~  299 (404)
                      ....++.|+.|.+..+.       ...+  ..+..+++|++|++++|.+..+++ +..+++|++|++++|.+..+|    
T Consensus        41 ~~~~l~~L~~L~l~~~~-------i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~----  106 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSD-------IKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS----  106 (291)
T ss_dssp             CHHHHHTCCEEECTTSC-------CCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG----
T ss_pred             chhhcCcccEEEccCCC-------cccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh----
Confidence            34567889999887765       1122  237889999999999999998887 999999999999999998765    


Q ss_pred             CccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhc
Q 046301          300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEA  379 (404)
Q Consensus       300 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~  379 (404)
                        .+..+++|++|++++| .+..+| .+..+++|+.|++..   +....+..+..+++|+ .|.+.++.- ....   + 
T Consensus       107 --~l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~---n~l~~~~~l~~l~~L~-~L~L~~N~l-~~~~---~-  173 (291)
T 1h6t_A          107 --SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGN---NKITDITVLSRLTKLD-TLSLEDNQI-SDIV---P-  173 (291)
T ss_dssp             --GGTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCS---SCCCCCGGGGGCTTCS-EEECCSSCC-CCCG---G-
T ss_pred             --hhccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccC---CcCCcchhhccCCCCC-EEEccCCcc-ccch---h-
Confidence              3899999999999999 677775 688999999996543   3333456788899999 999987643 2222   2 


Q ss_pred             cccCccCCCceEEEecC
Q 046301          380 QLNGKEKLEALSLKWVN  396 (404)
Q Consensus       380 ~l~~l~~L~~L~l~~~~  396 (404)
                       +..+++|+.|+++.|.
T Consensus       174 -l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             -GTTCTTCCEEECCSSC
T ss_pred             -hcCCCccCEEECCCCc
Confidence             7889999999998885

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.29  E-value=4e-12  Score=127.04  Aligned_cols=178  Identities=18%  Similarity=0.179  Sum_probs=125.5

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC-cccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP-NDIA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~  276 (404)
                      ++..++.+.+..+.+.... ...+.++++|+.|.+..+.       ...+.+..|.++++|++|++++|.+..+| ..++
T Consensus        26 l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (570)
T ss_dssp             SCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             ccccccEEEccCCccCccC-hhHhhCCCCceEEECCCCc-------CCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence            4567888988887765543 2357789999999998875       34455677899999999999999998765 6789


Q ss_pred             cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc--cccccccccccccccCceEeccCCcCCcccccc
Q 046301          277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE--EMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRS  354 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~  354 (404)
                      .+++|++|++++|.++.+|..    .++++++|++|++++| .+.  .+|..++++++|++|++..+... ......+..
T Consensus        98 ~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~  171 (570)
T 2z63_A           98 GLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV  171 (570)
T ss_dssp             TCTTCCEEECTTSCCCCSTTC----SCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHH
T ss_pred             CccccccccccccccccCCCc----cccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccc-eecHHHccc
Confidence            999999999999999988753    3889999999999998 455  47888999999999965433221 112234555


Q ss_pred             cccc----ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301          355 LMHL----QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       355 L~~L----~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      +++|    . .+.+.++..    ....+..+..+ +|+.|+++.+
T Consensus       172 l~~L~~~~~-~L~l~~n~l----~~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          172 LHQMPLLNL-SLDLSLNPM----NFIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             HHTCTTCCC-EEECTTCCC----CEECTTTTTTC-EEEEEEEESC
T ss_pred             hhccchhhh-hcccCCCCc----eecCHHHhccC-cceeEecccc
Confidence            5555    4 555554321    12222233333 4666665544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.29  E-value=1.8e-11  Score=104.95  Aligned_cols=147  Identities=14%  Similarity=0.244  Sum_probs=115.2

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-cCcccccC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDIAEL  278 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~L  278 (404)
                      ..++.+.+..+.+..   ++.+..+++|+.|.+..+.-       ..  ...+..+++|++|++++|.+.. .|..++.+
T Consensus        44 ~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~l~~n~~-------~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  111 (197)
T 4ezg_A           44 NSLTYITLANINVTD---LTGIEYAHNIKDLTINNIHA-------TN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGL  111 (197)
T ss_dssp             HTCCEEEEESSCCSC---CTTGGGCTTCSEEEEESCCC-------SC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred             CCccEEeccCCCccC---hHHHhcCCCCCEEEccCCCC-------Cc--chhhhcCCCCCEEEeECCccCcccChhhcCC
Confidence            357778888776654   34677889999999987741       11  1257889999999999999984 78899999


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL  358 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L  358 (404)
                      ++|++|++++|.+...    .|..++.+++|++|++++|..+..+| .+..+++|++|++..+   ....+..+..+++|
T Consensus       112 ~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n---~i~~~~~l~~l~~L  183 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD---GVHDYRGIEDFPKL  183 (197)
T ss_dssp             TTCCEEECCSSBCBGG----GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB---CCCCCTTGGGCSSC
T ss_pred             CCCCEEEecCCccCcH----hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC---CCcChHHhccCCCC
Confidence            9999999999998852    23458999999999999995588887 6899999999965433   33344577888889


Q ss_pred             ccceEEcCC
Q 046301          359 QEKLTISGL  367 (404)
Q Consensus       359 ~~~L~l~~~  367 (404)
                      + .|.+.+.
T Consensus       184 ~-~L~l~~N  191 (197)
T 4ezg_A          184 N-QLYAFSQ  191 (197)
T ss_dssp             C-EEEECBC
T ss_pred             C-EEEeeCc
Confidence            8 8999764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.29  E-value=4.4e-12  Score=128.56  Aligned_cols=126  Identities=14%  Similarity=0.169  Sum_probs=87.7

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccch-hhhhhhccC------ccccEEEecCCCcccc
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNN-LVFHVVPRL------RQLRVVSLCGYKIVQL  271 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~-~~~~~~~~l------~~L~~L~l~~~~~~~l  271 (404)
                      ...++.+.+..+.+.. ..+..+.++++|+.|.+..+.      ...+ ..+..+..+      ++|++|++++|.+..+
T Consensus       248 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~------~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i  320 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNR------GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF  320 (636)
T ss_dssp             CTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCT------TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred             cCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCC------CCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence            3567888888876554 223567789999999988764      1222 344445554      8899999999998888


Q ss_pred             Cc--ccccCCCcceEecCCCCcc-cCCCCCCCccccccccCceeecCCCCcccccccccccccc-ccccCc
Q 046301          272 PN--DIAELKHLRYLDFSHTAIE-VLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTS-LRTLAK  338 (404)
Q Consensus       272 p~--~~~~L~~L~~L~l~~~~l~-~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~-L~~L~~  338 (404)
                      |.  .++.+++|++|++++|.+. .+| .     ++++++|++|++++| .+..+|..++++++ |++|++
T Consensus       321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~-----~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~L  384 (636)
T 4eco_A          321 PVETSLQKMKKLGMLECLYNQLEGKLP-A-----FGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSF  384 (636)
T ss_dssp             CCHHHHTTCTTCCEEECCSCCCEEECC-C-----CEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEEC
T ss_pred             CchhhhccCCCCCEEeCcCCcCccchh-h-----hCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEc
Confidence            88  8899999999999999888 776 4     555566666666555 44455555555555 555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.28  E-value=5.2e-12  Score=123.54  Aligned_cols=156  Identities=17%  Similarity=0.154  Sum_probs=121.4

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+..+.       ...+.+..|.++++|++|++++|.+..+ |..+..+++|++|++++|.+..+|..    .+
T Consensus        32 ~~l~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~  100 (477)
T 2id5_A           32 TETRLLDLGKNR-------IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG----VF  100 (477)
T ss_dssp             TTCSEEECCSSC-------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT----SS
T ss_pred             CCCcEEECCCCc-------cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc----cc
Confidence            578899988765       3445567799999999999999999866 77899999999999999999988754    47


Q ss_pred             cccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccC
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNG  383 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~  383 (404)
                      .++++|++|++++|......|..+.++++|++|++..+... ......+..+++|+ .|.+.++.- .   ...+..+.+
T Consensus       101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~l-~---~~~~~~l~~  174 (477)
T 2id5_A          101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLE-QLTLEKCNL-T---SIPTEALSH  174 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCC-EEEEESCCC-S---SCCHHHHTT
T ss_pred             cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCC-EEECCCCcC-c---ccChhHhcc
Confidence            89999999999999444444667999999999965433221 12234678889999 999988643 2   223345778


Q ss_pred             ccCCCceEEEecCC
Q 046301          384 KEKLEALSLKWVNS  397 (404)
Q Consensus       384 l~~L~~L~l~~~~~  397 (404)
                      +++|+.|+++.+.-
T Consensus       175 l~~L~~L~l~~n~i  188 (477)
T 2id5_A          175 LHGLIVLRLRHLNI  188 (477)
T ss_dssp             CTTCCEEEEESCCC
T ss_pred             cCCCcEEeCCCCcC
Confidence            89999999998763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.28  E-value=3.9e-12  Score=116.97  Aligned_cols=176  Identities=20%  Similarity=0.146  Sum_probs=117.5

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhh-hhhccCccccEEEecCCCccc-cCccccc
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVF-HVVPRLRQLRVVSLCGYKIVQ-LPNDIAE  277 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-lp~~~~~  277 (404)
                      ..++.+.+..+.+..+  ...+..+++|+.|.+..+.       ...... ..+..+++|++|++++|.+.. .|..+..
T Consensus        78 ~~L~~L~Ls~n~i~~l--~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  148 (306)
T 2z66_A           78 TSLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSN-------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  148 (306)
T ss_dssp             SCCCEEECCSCSEEEE--EEEEETCTTCCEEECTTSE-------EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred             cccCEEECCCCccccC--hhhcCCCCCCCEEECCCCc-------ccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence            3455666555544332  1235667788888776654       122222 457788888888888888874 4556778


Q ss_pred             CCCcceEecCCCCccc--CCCCCCCccccccccCceeecCCCCccccc-cccccccccccccCceEeccCCcCCcccccc
Q 046301          278 LKHLRYLDFSHTAIEV--LPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNCYGLKELRS  354 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~--lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~  354 (404)
                      +++|++|++++|.+..  +|.     .+..+++|++|++++| .+..+ |..++++++|++|++..+... ......+..
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~  221 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPD-----IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKC  221 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECS-----CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTT
T ss_pred             CcCCCEEECCCCccccccchh-----HHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccC
Confidence            8888888888888764  443     4888999999999988 55555 566888888988855433221 112234677


Q ss_pred             ccccccceEEcCCCCCCCHhHHHhccccCc-cCCCceEEEecC
Q 046301          355 LMHLQEKLTISGLENVNDAEDAKEAQLNGK-EKLEALSLKWVN  396 (404)
Q Consensus       355 L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~  396 (404)
                      +++|+ .|+++++.    +.+..+..+..+ ++|+.|+++.|.
T Consensus       222 l~~L~-~L~L~~N~----l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          222 LNSLQ-VLDYSLNH----IMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CTTCC-EEECTTSC----CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             cccCC-EeECCCCC----CcccCHHHHHhhhccCCEEEccCCC
Confidence            88888 88887754    233445566777 489999987765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.27  E-value=1.2e-11  Score=108.17  Aligned_cols=130  Identities=15%  Similarity=0.135  Sum_probs=92.6

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-ccc
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAE  277 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~  277 (404)
                      +..++.+.+..+.+........+.+++.|+.|.+..+.       ...+.+..|.++++|++|++++|.+..+|+. +..
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  103 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-------ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG  103 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-------CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC
Confidence            44566777777766554333345678888888887665       3344555678888888888888888876654 778


Q ss_pred             CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccccccccccccCceE
Q 046301          278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFV  340 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~  340 (404)
                      +++|++|++++|.+..++.    ..+..+++|++|++++| .+..+ |..+..+++|++|++..
T Consensus       104 l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          104 LESLKTLMLRSNRITCVGN----DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CSSCCEEECTTSCCCCBCT----TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CcCCCEEECCCCcCCeECH----hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecC
Confidence            8888888888888886642    24778888888888888 55555 56688888888885543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.27  E-value=7.7e-12  Score=121.50  Aligned_cols=132  Identities=11%  Similarity=0.107  Sum_probs=94.6

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-Ccccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~  276 (404)
                      .+..++.+.+..+.+.... ...+.++++|+.|.+..+.      ....+.+..|.++++|++|++++|.+..+ |..++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~------~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  100 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQT------PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN  100 (455)
T ss_dssp             CCTTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCS------TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred             CCCccCEEEecCCccCcCC-hhHhccCccccEEECcCCc------ccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence            4567888888887765532 3457788999999887765      22344456688889999999999988855 77888


Q ss_pred             cCCCcceEecCCCCccc-CCCCCCCccccccccCceeecCCCCccccc-ccc-ccccccccccCceE
Q 046301          277 ELKHLRYLDFSHTAIEV-LPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLR-IGKLTSLRTLAKFV  340 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~-lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~-~~~l~~L~~L~~~~  340 (404)
                      .+++|++|++++|.+.. .|..   ..+.++++|++|++++| .+..+ |.. ++++++|++|++..
T Consensus       101 ~l~~L~~L~L~~n~l~~~~~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~  163 (455)
T 3v47_A          101 GLANLEVLTLTQCNLDGAVLSG---NFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTF  163 (455)
T ss_dssp             TCTTCCEEECTTSCCBTHHHHS---STTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTT
T ss_pred             CcccCCEEeCCCCCCCccccCc---ccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCC
Confidence            89999999999988874 2211   12777888888888887 45544 544 67778888775543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.27  E-value=3.2e-12  Score=128.89  Aligned_cols=131  Identities=17%  Similarity=0.143  Sum_probs=106.8

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+.++.       ...+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.+..++    |..+
T Consensus        32 ~~l~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~  100 (606)
T 3vq2_A           32 SSTKNIDLSFNP-------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS----PGSF  100 (606)
T ss_dssp             TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC----TTSS
T ss_pred             CCcCEEECCCCC-------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC----hhhc
Confidence            789999998876       3455666799999999999999999976 567899999999999999998763    2359


Q ss_pred             cccccCceeecCCCCcccccc-ccccccccccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301          304 GNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE  368 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~  368 (404)
                      +++++|++|++++| .+..+| ..++++++|++|++..+.......+..+.++++|+ .|++.++.
T Consensus       101 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~-~L~Ls~n~  164 (606)
T 3vq2_A          101 SGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV-HVDLSYNY  164 (606)
T ss_dssp             TTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC-EEECCSSC
T ss_pred             CCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC-EEEccCCc
Confidence            99999999999999 676666 66999999999976544333223456788999999 89887753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.27  E-value=4.5e-11  Score=111.78  Aligned_cols=168  Identities=19%  Similarity=0.182  Sum_probs=88.0

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK  279 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~  279 (404)
                      .+++.+.+..+.+...   +.+.++++|+.|.+..+.-       ...  ..+..+++|++|++++|.+..+|. +..++
T Consensus        66 ~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~L~~n~i-------~~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~  132 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKI-------TDI--SALQNLTNLRELYLNEDNISDISP-LANLT  132 (347)
T ss_dssp             TTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCC-------CCC--GGGTTCTTCSEEECTTSCCCCCGG-GTTCT
T ss_pred             CCccEEEccCCccccc---hhhhcCCcCCEEEccCCcc-------cCc--hHHcCCCcCCEEECcCCcccCchh-hccCC
Confidence            3455555554443332   2245555566665554430       111  135555666666666666555554 55566


Q ss_pred             CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccc
Q 046301          280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQ  359 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~  359 (404)
                      +|++|++++|.....+     +.+..+++|++|++++| .+..++. +..+++|++|++.   .+....+..+..+++|+
T Consensus       133 ~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~---~n~l~~~~~~~~l~~L~  202 (347)
T 4fmz_A          133 KMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLN---YNQIEDISPLASLTSLH  202 (347)
T ss_dssp             TCCEEECTTCTTCCCC-----GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECT---TSCCCCCGGGGGCTTCC
T ss_pred             ceeEEECCCCCCcccc-----cchhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEcc---CCcccccccccCCCccc
Confidence            6666666665322111     12666666666666666 4555543 5566666666433   22222333455666666


Q ss_pred             cceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          360 EKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       360 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                       .|.+.++.. .....     +..+++|+.|++++|.-
T Consensus       203 -~L~l~~n~l-~~~~~-----~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          203 -YFTAYVNQI-TDITP-----VANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             -EEECCSSCC-CCCGG-----GGGCTTCCEEECCSSCC
T ss_pred             -eeecccCCC-CCCch-----hhcCCcCCEEEccCCcc
Confidence             666665432 11111     66778888888877753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.26  E-value=1.3e-11  Score=124.13  Aligned_cols=129  Identities=16%  Similarity=0.114  Sum_probs=100.1

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAEL  278 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L  278 (404)
                      .+++.+.+..+.+..+. ...+.+++.|+.|.+..+.       ...+++..|..+++|++|++++|.+..+|+. ++.+
T Consensus        51 ~~l~~l~l~~~~l~~lp-~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQ-------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             CCCSEEEESSCEESEEC-THHHHHCCCCSEEECTTSC-------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCceEEEeeCCCCCCcC-HHHHccCCCCcEEECCCCC-------CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            45667777665544432 1235678999999998765       3455666789999999999999999977654 6999


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-ccccccccccccCceEe
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVV  341 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~  341 (404)
                      ++|++|++++|.+..+|..    .++++++|++|++++| .+..+| ..++++++|++|++..+
T Consensus       123 ~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC
Confidence            9999999999999987754    3589999999999999 555555 46999999999966533

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.25  E-value=1.6e-11  Score=125.57  Aligned_cols=156  Identities=19%  Similarity=0.159  Sum_probs=116.3

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~  276 (404)
                      ++..++.+.+..+.+.... ...+.++++|++|.+..+.       .....+..|.++++|++|++++|.+..+|+ .++
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~   94 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNT-------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA   94 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSC-------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCc-------cCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence            4567899999888766543 2457788999999998765       344556778999999999999999998887 599


Q ss_pred             cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccc--c
Q 046301          277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELR--S  354 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~--~  354 (404)
                      .+++|++|++++|.+..+|..    .++++++|++|++++|......|..++++++|++|++..+... ......+.  .
T Consensus        95 ~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~  169 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFA  169 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGT
T ss_pred             cCCCCCEEECCCCccCccChh----HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccc
Confidence            999999999999999877643    5899999999999999444444556889999999965433221 11112222  3


Q ss_pred             ccccccceEEcCC
Q 046301          355 LMHLQEKLTISGL  367 (404)
Q Consensus       355 L~~L~~~L~l~~~  367 (404)
                      +++|+ .|.+.++
T Consensus       170 ~~~L~-~L~L~~n  181 (680)
T 1ziw_A          170 NSSLK-KLELSSN  181 (680)
T ss_dssp             TCEES-EEECTTC
T ss_pred             ccccc-EEECCCC
Confidence            46777 7777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.25  E-value=1e-11  Score=107.38  Aligned_cols=126  Identities=20%  Similarity=0.260  Sum_probs=68.5

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAEL  278 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L  278 (404)
                      ..++.+.+..+.+.... ...+.++++|+.|.+..+.       ...++...|..+++|++|++++|.+..+|.. +..+
T Consensus        28 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   99 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNK-------LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL   99 (208)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCc-------cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence            45556666555544321 1223455666666665543       2233344455666666666666666655543 4566


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK  338 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~  338 (404)
                      ++|++|++++|.+..+|..    .+..+++|++|++++| .+..+|.. +.++++|++|++
T Consensus       100 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEEcCCCcCcccCHh----HhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEe
Confidence            6666666666666654432    3455666666666666 45555543 555666666633

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.24  E-value=7.3e-12  Score=126.59  Aligned_cols=130  Identities=18%  Similarity=0.147  Sum_probs=102.4

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+..+.       ...+++..|.++++|++|+|++|.|..+|+ .|..|++|++|+|++|+++.+|..    .+
T Consensus        52 ~~~~~LdLs~N~-------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~f  120 (635)
T 4g8a_A           52 FSTKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----AF  120 (635)
T ss_dssp             TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG----GG
T ss_pred             cCCCEEEeeCCC-------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH----Hh
Confidence            478889888765       455667778999999999999999998865 588999999999999999987753    57


Q ss_pred             cccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCC
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGL  367 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~  367 (404)
                      .++++|++|++++| .+..+|.. ++++++|++|++..+.......+..+..+++|+ .|.+.++
T Consensus       121 ~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~-~L~L~~N  183 (635)
T 4g8a_A          121 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE-HLDLSSN  183 (635)
T ss_dssp             TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC-EEECCSS
T ss_pred             cCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh-hhcccCc
Confidence            89999999999998 67778764 899999999976544333233345567788888 8888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.24  E-value=8e-12  Score=109.20  Aligned_cols=130  Identities=17%  Similarity=0.164  Sum_probs=97.9

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+.++.       ...+++..|..+++|++|++++|.+..+ |..+..+++|++|+|++|.++.+|..    .+
T Consensus        32 ~~l~~L~l~~n~-------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f  100 (220)
T 2v9t_B           32 ETITEIRLEQNT-------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS----LF  100 (220)
T ss_dssp             TTCCEEECCSSC-------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTT----TT
T ss_pred             cCCCEEECCCCc-------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHh----Hc
Confidence            578888887765       3345556788899999999999999866 77889999999999999999977754    46


Q ss_pred             cccccCceeecCCCCccccc-cccccccccccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301          304 GNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE  368 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~  368 (404)
                      ..+++|++|++++| .+..+ |..+..+++|++|++..+.... .....+..+++|+ .|.+.++.
T Consensus       101 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~-~L~L~~N~  163 (220)
T 2v9t_B          101 EGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQ-TMHLAQNP  163 (220)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCC-EEECCSSC
T ss_pred             cCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCC-EEEeCCCC
Confidence            78999999999998 56666 4558888999998665433221 1223467778888 88887643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.24  E-value=1.4e-11  Score=121.82  Aligned_cols=100  Identities=21%  Similarity=0.232  Sum_probs=49.1

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+..+.       ....++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.++.+|.     . 
T Consensus        21 ~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-----~-   87 (520)
T 2z7x_B           21 QKTTILNISQNY-------ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-----H-   87 (520)
T ss_dssp             TTCSEEECCSSC-------CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-----C-
T ss_pred             ccccEEECCCCc-------ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-----c-
Confidence            455555554443       2223334455555555555555555543 4455555555555555555554442     1 


Q ss_pred             cccccCceeecCCCCcccc--ccccccccccccccCce
Q 046301          304 GNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKF  339 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~  339 (404)
                       .+++|++|++++| .+..  +|..++++++|++|++.
T Consensus        88 -~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~  123 (520)
T 2z7x_B           88 -PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLS  123 (520)
T ss_dssp             -CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEE
T ss_pred             -ccCCccEEeccCC-ccccccchhhhccCCcceEEEec
Confidence             4555555555555 2332  34445555555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.24  E-value=2e-11  Score=127.75  Aligned_cols=182  Identities=18%  Similarity=0.099  Sum_probs=135.2

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-Ccccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~  276 (404)
                      .+..++.|.+..+.+.... ...+.++++|+.|.+..+.      ....+.+..|.++++|++|++++|.+..+ |..++
T Consensus        22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~   94 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ   94 (844)
T ss_dssp             SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred             CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence            6788999999988776542 3567889999999998864      23445567799999999999999999865 88899


Q ss_pred             cCCCcceEecCCCCccc-CCCCCCCccccccccCceeecCCCCcccccc--ccccccccccccCceEeccCCcCCccccc
Q 046301          277 ELKHLRYLDFSHTAIEV-LPESKLFPDVGNLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTLAKFVVGKGNCYGLKELR  353 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~-lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~~~~~~~~~~~~~~~l~  353 (404)
                      .+++|++|++++|.+.. +|..   ..++++++|++|++++| .+..++  ..++++++|++|++..+... ......+.
T Consensus        95 ~l~~L~~L~Ls~n~l~~~~~~~---~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-~~~~~~l~  169 (844)
T 3j0a_A           95 GLFHLFELRLYFCGLSDAVLKD---GYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELE  169 (844)
T ss_dssp             SCSSCCCEECTTCCCSSCCSTT---CCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC-CCCSGGGH
T ss_pred             CCcccCEeeCcCCCCCcccccC---ccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC-eeCHHHcc
Confidence            99999999999999875 3321   23889999999999999 555543  46899999999966543222 22345566


Q ss_pred             cc--cccccceEEcCCCCCCCHhHHHhccccCccC------CCceEEEecC
Q 046301          354 SL--MHLQEKLTISGLENVNDAEDAKEAQLNGKEK------LEALSLKWVN  396 (404)
Q Consensus       354 ~L--~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~  396 (404)
                      .+  ++|+ .|.+.++...    ...+..+..+.+      |+.|+++.|.
T Consensus       170 ~l~~~~L~-~L~L~~n~l~----~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  215 (844)
T 3j0a_A          170 PLQGKTLS-FFSLAANSLY----SRVSVDWGKCMNPFRNMVLEILDVSGNG  215 (844)
T ss_dssp             HHHHCSSC-CCEECCSBSC----CCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred             cccCCccc-eEECCCCccc----cccccchhhcCCccccCceeEEecCCCc
Confidence            66  7888 8888775432    223334444444      9999998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.24  E-value=2.5e-11  Score=127.05  Aligned_cols=158  Identities=18%  Similarity=0.142  Sum_probs=111.8

Q ss_pred             CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-cccc-CcccccCCCcceEecCCCCcccCCCCCCC
Q 046301          223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLF  300 (404)
Q Consensus       223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p  300 (404)
                      -.+.++.|.+..+.       ...+.+..|.++++|++|++++|. +..+ |..++++++|++|+|++|.+..++    |
T Consensus        22 lp~~l~~LdLs~N~-------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~----p   90 (844)
T 3j0a_A           22 VLNTTERLLLSFNY-------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH----P   90 (844)
T ss_dssp             SCTTCCEEEEESCC-------CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC----T
T ss_pred             CCCCcCEEECCCCc-------CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC----H
Confidence            44788888887765       334555678889999999999885 4456 677888999999999999888653    2


Q ss_pred             ccccccccCceeecCCCCcccccccc--ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHh
Q 046301          301 PDVGNLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKE  378 (404)
Q Consensus       301 ~~~~~l~~L~~L~l~~~~~l~~lp~~--~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~  378 (404)
                      ..++++++|++|++++|.....+|..  ++++++|++|++..+..........+.++++|+ .|.+.++...    ...+
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~-~L~Ls~N~i~----~~~~  165 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK-SIDFSSNQIF----LVCE  165 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC-EEEEESSCCC----CCCS
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC-EEECCCCcCC----eeCH
Confidence            35889999999999988433445655  888889999876654433222224678888888 8888875422    2222


Q ss_pred             ccccCc--cCCCceEEEecC
Q 046301          379 AQLNGK--EKLEALSLKWVN  396 (404)
Q Consensus       379 ~~l~~l--~~L~~L~l~~~~  396 (404)
                      ..+..+  ++|+.|+++.|.
T Consensus       166 ~~l~~l~~~~L~~L~L~~n~  185 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAANS  185 (844)
T ss_dssp             GGGHHHHHCSSCCCEECCSB
T ss_pred             HHcccccCCccceEECCCCc
Confidence            334444  688888888775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.24  E-value=3e-11  Score=117.25  Aligned_cols=89  Identities=17%  Similarity=0.129  Sum_probs=41.4

Q ss_pred             ccccccccCceeecCCCCccccc-cccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhc
Q 046301          301 PDVGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEA  379 (404)
Q Consensus       301 ~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~  379 (404)
                      ..++++++|++|++++| .+..+ |..++++++|++|++..+... ......+..+++|+ .|+++++.    +....+.
T Consensus       293 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~-~L~Ls~N~----l~~~~~~  365 (455)
T 3v47_A          293 SVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLE-VLDLSYNH----IRALGDQ  365 (455)
T ss_dssp             TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCC-EEECCSSC----CCEECTT
T ss_pred             hhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCC-EEECCCCc----ccccChh
Confidence            34555566666666665 33333 334556666666644322111 11123344555555 55555432    1222334


Q ss_pred             cccCccCCCceEEEecC
Q 046301          380 QLNGKEKLEALSLKWVN  396 (404)
Q Consensus       380 ~l~~l~~L~~L~l~~~~  396 (404)
                      .+.++++|+.|+++.|.
T Consensus       366 ~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          366 SFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             TTTTCTTCCEEECCSSC
T ss_pred             hccccccccEEECCCCc
Confidence            45555555555555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.24  E-value=5.3e-12  Score=131.16  Aligned_cols=163  Identities=17%  Similarity=0.160  Sum_probs=122.2

Q ss_pred             ccccCCCCccEEEecccCccccc----------cccchhhhhhhc--cCccccEEEecCCCcc-ccCcccccCCCcceEe
Q 046301          219 EGLHKVEYLRTFLALLLGTRKTF----------YVTNNLVFHVVP--RLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLD  285 (404)
Q Consensus       219 ~~~~~~~~L~~L~~~~~~~~~~~----------~~~~~~~~~~~~--~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~  285 (404)
                      ..+.++++|+.|.+..+.-....          ....+..+..+.  ++++|++|++++|.+. .+|..++.|++|++|+
T Consensus       442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred             HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence            45778999999999887611100          000012445555  9999999999999965 8899999999999999


Q ss_pred             cCCCC-ccc--CCCCCCCccccccc-------cCceeecCCCCccccccc--cccccccccccCceEeccCCcCCccccc
Q 046301          286 FSHTA-IEV--LPESKLFPDVGNLV-------NLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVGKGNCYGLKELR  353 (404)
Q Consensus       286 l~~~~-l~~--lp~~~~p~~~~~l~-------~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~  353 (404)
                      +++|+ +..  +|.     .+++++       +|++|++++| .+..+|.  .++++++|++|++..+..   ..++.+.
T Consensus       522 Ls~N~~lsg~~iP~-----~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l---~~lp~~~  592 (876)
T 4ecn_A          522 IACNRGISAAQLKA-----DWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKV---RHLEAFG  592 (876)
T ss_dssp             CTTCTTSCHHHHHH-----HHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCC---CBCCCCC
T ss_pred             CcCCCCcccccchH-----HHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCc---ccchhhc
Confidence            99997 773  554     477666       9999999999 6779999  899999999996643322   2444788


Q ss_pred             cccccccceEEcCCCCCCCHhHHHhccccCccC-CCceEEEecC
Q 046301          354 SLMHLQEKLTISGLENVNDAEDAKEAQLNGKEK-LEALSLKWVN  396 (404)
Q Consensus       354 ~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~  396 (404)
                      .+++|+ .|.+.++...     .+|..+.++++ |+.|+|+.|.
T Consensus       593 ~L~~L~-~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          593 TNVKLT-DLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             TTSEES-EEECCSSCCS-----CCCTTSCEECTTCCEEECCSSC
T ss_pred             CCCcce-EEECcCCccc-----cchHHHhhccccCCEEECcCCC
Confidence            888888 8888775431     34556778888 8888888775

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.24  E-value=9.8e-13  Score=122.56  Aligned_cols=182  Identities=15%  Similarity=0.105  Sum_probs=91.3

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCC-Ccc--ccCcccc
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGY-KIV--QLPNDIA  276 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~--~lp~~~~  276 (404)
                      .+++.+.+..+.+........+..+++|+.|.+.++.       .....+..+..+++|++|++++| .++  .+|..+.
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~  165 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS  165 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence            3455555554433221112234556667777666543       22233444556666666666666 454  2555566


Q ss_pred             cCCCcceEecCCC-CcccCCCCCCCccccccc-cCceeecCCCC-cc--ccccccccccccccccCceEeccCCcCCccc
Q 046301          277 ELKHLRYLDFSHT-AIEVLPESKLFPDVGNLV-NLRHLKDSHSN-LL--EEMPLRIGKLTSLRTLAKFVVGKGNCYGLKE  351 (404)
Q Consensus       277 ~L~~L~~L~l~~~-~l~~lp~~~~p~~~~~l~-~L~~L~l~~~~-~l--~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~  351 (404)
                      .+++|++|++++| .+...   .+|..+..++ +|++|++++|. .+  ..+|..+.++++|++|++..+.......+..
T Consensus       166 ~~~~L~~L~l~~~~~l~~~---~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          166 SCSRLDELNLSWCFDFTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             HCTTCCEEECCCCTTCCHH---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             cCCCCCEEcCCCCCCcChH---HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence            6666666666666 55521   0122355666 66666666652 11  3445445556666666443332111223345


Q ss_pred             cccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301          352 LRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       352 l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      +.++++|+ .|.+.++....   ......+.++++|+.|+++.+
T Consensus       243 l~~l~~L~-~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          243 FFQLNYLQ-HLSLSRCYDII---PETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGCTTCC-EEECTTCTTCC---GGGGGGGGGCTTCCEEECTTS
T ss_pred             HhCCCCCC-EeeCCCCCCCC---HHHHHHHhcCCCCCEEeccCc
Confidence            55556666 66665554211   111123455566666666544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.23  E-value=1.9e-11  Score=116.41  Aligned_cols=133  Identities=17%  Similarity=0.137  Sum_probs=106.7

Q ss_pred             cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCC
Q 046301          222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLF  300 (404)
Q Consensus       222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p  300 (404)
                      ..+++++.+.+.++.       ...++...+..+++|++|++++|.+..+|+ .+..+++|++|++++|.+..+|..   
T Consensus        42 ~~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---  111 (390)
T 3o6n_A           42 ITLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH---  111 (390)
T ss_dssp             GGGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT---
T ss_pred             cccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH---
Confidence            356889999887754       445666778999999999999999997764 899999999999999999977643   


Q ss_pred             ccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301          301 PDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE  368 (404)
Q Consensus       301 ~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~  368 (404)
                       .++++++|++|++++| .+..+|.. ++++++|++|++..+... ......+..+++|+ .|.+.++.
T Consensus       112 -~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~  176 (390)
T 3o6n_A          112 -VFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ-NLQLSSNR  176 (390)
T ss_dssp             -TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCC-EEECCSSC
T ss_pred             -HhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCC-EEECCCCc
Confidence             5899999999999999 78899987 589999999966543322 22234578888898 89987754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.23  E-value=1.6e-12  Score=106.29  Aligned_cols=130  Identities=16%  Similarity=0.170  Sum_probs=81.9

Q ss_pred             cCccccEEEecCCCcc--ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccc-cccccccc
Q 046301          254 RLRQLRVVSLCGYKIV--QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEE-MPLRIGKL  330 (404)
Q Consensus       254 ~l~~L~~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~-lp~~~~~l  330 (404)
                      ..++|+.|++++|.+.  .+|..+..+++|++|++++|.+..+ .     .++++++|++|++++| .+.. +|..++++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l   87 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-A-----NLPKLNKLKKLELSDN-RVSGGLEVLAEKC   87 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-T-----TCCCCTTCCEEECCSS-CCCSCTHHHHHHC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-h-----hhhcCCCCCEEECCCC-cccchHHHHhhhC
Confidence            3466778888888777  6777777778888888888877765 2     3777788888888777 4444 66666667


Q ss_pred             ccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEE
Q 046301          331 TSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSL  392 (404)
Q Consensus       331 ~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l  392 (404)
                      ++|++|++..+.......+..+..+++|+ .|.+.++.- ...+......+..+++|+.|++
T Consensus        88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~-~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           88 PNLTHLNLSGNKIKDLSTIEPLKKLENLK-SLDLFNCEV-TNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TTCCEEECTTSCCCSHHHHGGGGGCTTCC-EEECTTCGG-GGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCEEECCCCcCCChHHHHHHhhCCCCC-EEeCcCCcc-cchHHHHHHHHHHCCCcccccC
Confidence            77777754433221111124566777777 777766432 1112111134666777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.23  E-value=2.4e-11  Score=106.78  Aligned_cols=130  Identities=22%  Similarity=0.264  Sum_probs=107.6

Q ss_pred             ccCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-c
Q 046301          197 RFSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-I  275 (404)
Q Consensus       197 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~  275 (404)
                      .++.+++.+.+..+.+.... ...+.++++|+.|.+..+.       ...++...|..+++|++|++++|.+..+|+. +
T Consensus        37 ~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~-------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  108 (229)
T 3e6j_A           37 GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQ-------LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF  108 (229)
T ss_dssp             CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCC-------CCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence            34577889999888776642 2456788999999998876       3455666789999999999999999988765 6


Q ss_pred             ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceE
Q 046301          276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFV  340 (404)
Q Consensus       276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~  340 (404)
                      ..+++|++|++++|.+..+|..     +..+++|++|++++| .+..+|.. +..+++|+.|.+..
T Consensus       109 ~~l~~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLTELPRG-----IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTT-----GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CcchhhCeEeccCCcccccCcc-----cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeC
Confidence            8899999999999999977765     999999999999999 78888754 88899999986543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.23  E-value=1.6e-11  Score=123.69  Aligned_cols=125  Identities=22%  Similarity=0.232  Sum_probs=56.3

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcc-cccC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPND-IAEL  278 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~-~~~L  278 (404)
                      .++.+.+..+.+..+  ...+.++++|+.|.+..+.       .....+..+..+++|++|++++|.+. .+|.. +..+
T Consensus       279 ~L~~L~l~~n~l~~l--p~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          279 GLQELDLTATHLSEL--PSGLVGLSTLKKLVLSANK-------FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             TCSEEECTTSCCSCC--CSSCCSCTTCCEEECTTCC-------CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             CCCEEeccCCccCCC--ChhhcccccCCEEECccCC-------cCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence            455555555444322  1234556666666665544       12223334455555555555555544 33332 4455


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccccccccc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL  336 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L  336 (404)
                      ++|++|++++|.+..++.  .|..+..+++|++|++++|......|..++++++|++|
T Consensus       350 ~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL  405 (606)
T ss_dssp             TTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred             CcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence            555555555555443320  01224444444444444442222223334444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.22  E-value=5e-11  Score=111.49  Aligned_cols=150  Identities=17%  Similarity=0.205  Sum_probs=77.0

Q ss_pred             ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCC
Q 046301          221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLF  300 (404)
Q Consensus       221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p  300 (404)
                      +..+++|+.|.+..+.-       .....  +..++.|++|++++|.+..++. +..+++|++|++++|.+..++.    
T Consensus       173 ~~~l~~L~~L~l~~n~l-------~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~----  238 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQI-------EDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP----  238 (347)
T ss_dssp             GGGCTTCSEEECTTSCC-------CCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG----
T ss_pred             hccCCCCCEEEccCCcc-------ccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc----
Confidence            44556666666555431       11111  4455555555555555554444 5555666666666665554431    


Q ss_pred             ccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcc
Q 046301          301 PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQ  380 (404)
Q Consensus       301 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~  380 (404)
                        +..+++|++|++++| .+..+| .+..+++|++|++..+   ....++.+..+++|+ .|.+.++.-    .+..+..
T Consensus       239 --~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n---~l~~~~~~~~l~~L~-~L~L~~n~l----~~~~~~~  306 (347)
T 4fmz_A          239 --LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN---QISDISVLNNLSQLN-SLFLNNNQL----GNEDMEV  306 (347)
T ss_dssp             --GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS---CCCCCGGGGGCTTCS-EEECCSSCC----CGGGHHH
T ss_pred             --hhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC---ccCCChhhcCCCCCC-EEECcCCcC----CCcChhH
Confidence              556666666666665 444443 3555566666643322   222234455555666 666655432    2233334


Q ss_pred             ccCccCCCceEEEecC
Q 046301          381 LNGKEKLEALSLKWVN  396 (404)
Q Consensus       381 l~~l~~L~~L~l~~~~  396 (404)
                      +.++++|+.|+++.|.
T Consensus       307 l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          307 IGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             HHTCTTCSEEECCSSS
T ss_pred             hhccccCCEEEccCCc
Confidence            5556666666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.22  E-value=1.7e-11  Score=122.58  Aligned_cols=140  Identities=17%  Similarity=0.170  Sum_probs=75.2

Q ss_pred             hhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCC---------------------CCCccccccccC
Q 046301          251 VVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES---------------------KLFPDVGNLVNL  309 (404)
Q Consensus       251 ~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~---------------------~~p~~~~~l~~L  309 (404)
                      .+..+++|++|++++|.+..+|+.+..+++|++|++++|.+...+..                     ..|..+..+++|
T Consensus       368 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  447 (570)
T 2z63_A          368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  447 (570)
T ss_dssp             HHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             cccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence            35556666666666666665555555666666666666555433220                     122345566666


Q ss_pred             ceeecCCCCcc-ccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCC
Q 046301          310 RHLKDSHSNLL-EEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLE  388 (404)
Q Consensus       310 ~~L~l~~~~~l-~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~  388 (404)
                      ++|++++|... ..+|..++.+++|++|++..+... ...+..+.++++|+ .|.+.++.-    .+..+..+.++++|+
T Consensus       448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~l----~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ-VLNMASNQL----KSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC-EEECCSSCC----SCCCTTTTTTCTTCC
T ss_pred             cEEECcCCcCccccchhhhhcccCCCEEECCCCccc-cCChhhhhcccCCC-EEeCCCCcC----CCCCHHHhhcccCCc
Confidence            66666666222 245656666666666644322111 11233456666666 666665432    222334466677777


Q ss_pred             ceEEEecC
Q 046301          389 ALSLKWVN  396 (404)
Q Consensus       389 ~L~l~~~~  396 (404)
                      .|+++.|.
T Consensus       522 ~L~l~~N~  529 (570)
T 2z63_A          522 KIWLHTNP  529 (570)
T ss_dssp             EEECCSSC
T ss_pred             EEEecCCc
Confidence            77776664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.22  E-value=2.8e-11  Score=121.34  Aligned_cols=148  Identities=20%  Similarity=0.252  Sum_probs=117.6

Q ss_pred             ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCC
Q 046301          221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLF  300 (404)
Q Consensus       221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p  300 (404)
                      ...++.|+.|.+..+.       ...+  ..+..+++|+.|+|++|.+..+|+ +..+++|+.|+|++|.+..+|     
T Consensus        39 ~~~L~~L~~L~l~~n~-------i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----  103 (605)
T 1m9s_A           39 QNELNSIDQIIANNSD-------IKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-----  103 (605)
T ss_dssp             HHHHTTCCCCBCTTCC-------CCCC--TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-----
T ss_pred             hhcCCCCCEEECcCCC-------CCCC--hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-----
Confidence            4567778888776654       1122  247889999999999999998887 999999999999999998765     


Q ss_pred             ccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcc
Q 046301          301 PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQ  380 (404)
Q Consensus       301 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~  380 (404)
                       .+..+++|++|++++| .+..+| .+..+++|+.|++..+   ....+..+..+++|+ .|.+.++.. .   +..+  
T Consensus       104 -~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N---~l~~l~~l~~l~~L~-~L~Ls~N~l-~---~~~~--  170 (605)
T 1m9s_A          104 -SLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNN---KITDITVLSRLTKLD-TLSLEDNQI-S---DIVP--  170 (605)
T ss_dssp             -TSTTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSS---CCCCCGGGGSCTTCS-EEECCSSCC-C---CCGG--
T ss_pred             -hhccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCC---ccCCchhhcccCCCC-EEECcCCcC-C---Cchh--
Confidence             3899999999999999 677775 5889999999966533   333457788999999 999987653 2   2222  


Q ss_pred             ccCccCCCceEEEecC
Q 046301          381 LNGKEKLEALSLKWVN  396 (404)
Q Consensus       381 l~~l~~L~~L~l~~~~  396 (404)
                      +..+++|+.|+|+.|.
T Consensus       171 l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             GTTCTTCCEEECCSSC
T ss_pred             hccCCCCCEEECcCCC
Confidence            7889999999998875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.21  E-value=1.2e-11  Score=108.10  Aligned_cols=130  Identities=15%  Similarity=0.121  Sum_probs=91.8

Q ss_pred             CCccEEEecccCccccccccchh-hhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCcc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNL-VFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPD  302 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~  302 (404)
                      ..++.|.+..+.       .... +...|..+++|++|++++|.++.+++ .+..+++|++|++++|.+..++..    .
T Consensus        32 ~~~~~L~L~~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~  100 (220)
T 2v70_A           32 QYTAELRLNNNE-------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK----M  100 (220)
T ss_dssp             TTCSEEECCSSC-------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGG----G
T ss_pred             CCCCEEEcCCCc-------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHh----H
Confidence            355777777655       2222 23457788889999999998887765 688888999999999988876643    5


Q ss_pred             ccccccCceeecCCCCccccc-cccccccccccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301          303 VGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE  368 (404)
Q Consensus       303 ~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~  368 (404)
                      +..+++|++|++++| .+..+ |..+..+++|++|++..+... ...+..+..+++|+ .|.+.++.
T Consensus       101 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~  164 (220)
T 2v70_A          101 FKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLS-TLNLLANP  164 (220)
T ss_dssp             GTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCC-CBCTTTTTTCTTCC-EEECCSCC
T ss_pred             hcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCC-EECHHHhcCCCCCC-EEEecCcC
Confidence            788889999999888 55555 566888888888855433221 12234577778888 78877643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.21  E-value=4.5e-11  Score=104.40  Aligned_cols=130  Identities=19%  Similarity=0.201  Sum_probs=105.9

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IA  276 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~  276 (404)
                      ++..++.+.+..+.+..+. ...+..+++|+.|.+..+.       ...+.+..|.++++|++|++++|.+..+|+. +.
T Consensus        30 l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~-------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~  101 (220)
T 2v9t_B           30 LPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQ-------ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE  101 (220)
T ss_dssp             CCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSC-------CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred             cCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCc-------CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence            4467888988888776543 2356788999999998876       3455567799999999999999999998876 57


Q ss_pred             cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceE
Q 046301          277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFV  340 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~  340 (404)
                      .+++|++|++++|.+..++.    ..+..+++|++|++++| .+..+|.. +..+++|+.|++..
T Consensus       102 ~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          102 GLFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCC
Confidence            89999999999999997754    36889999999999999 67777764 88899999986543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.21  E-value=3.2e-11  Score=100.52  Aligned_cols=130  Identities=16%  Similarity=0.141  Sum_probs=78.6

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-cCccccc
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDIAE  277 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~  277 (404)
                      +..++.+.+..+.+........+..+++|+.|.+..+.       ....  ..+..+++|++|++++|.+.. +|..+..
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence            34566666666655411111223566777777776654       1111  446667777777777777765 5555556


Q ss_pred             CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc----cccccccccccCceEe
Q 046301          278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL----RIGKLTSLRTLAKFVV  341 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~~~~~  341 (404)
                      +++|++|++++|.++.+|.   +..+..+++|++|++++| .+..+|.    .+..+++|++|++..+
T Consensus        94 l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence            7777777777777766542   123667777777777777 5666665    4666777777755443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.20  E-value=2e-11  Score=108.07  Aligned_cols=174  Identities=11%  Similarity=0.069  Sum_probs=127.5

Q ss_pred             CCCcceEEEEecc-CccccccccccCCCCccEEEecc-cCccccccccchhhhhhhccCccccEEEecCCCccccCcccc
Q 046301          199 SRNLRHLSYLTSQ-FDGIKRFEGLHKVEYLRTFLALL-LGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIA  276 (404)
Q Consensus       199 ~~~~r~l~~~~~~-~~~~~~~~~~~~~~~L~~L~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~  276 (404)
                      ...++.+.+..+. +..+. ...+.++++|+.|.+.+ +.       ...+++..|.++++|++|++++|.+..+|. +.
T Consensus        54 l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~-------l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~  124 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRN-------LTYIDPDALKELPLLKFLGIFNTGLKMFPD-LT  124 (239)
T ss_dssp             CTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETT-------CCEECTTSEECCTTCCEEEEEEECCCSCCC-CT
T ss_pred             CCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCC-------eeEcCHHHhCCCCCCCEEeCCCCCCccccc-cc
Confidence            3568888888875 54432 23567889999999987 44       334556678899999999999999999987 88


Q ss_pred             cCCCcc---eEecCCC-CcccCCCCCCCccccccccCc-eeecCCCCccccccccccccccccccCceEeccCCcCCccc
Q 046301          277 ELKHLR---YLDFSHT-AIEVLPESKLFPDVGNLVNLR-HLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKE  351 (404)
Q Consensus       277 ~L~~L~---~L~l~~~-~l~~lp~~~~p~~~~~l~~L~-~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~  351 (404)
                      .+.+|+   +|++++| .+..+|..    .+..+++|+ +|++++| .+..+|......++|+.|++..+..........
T Consensus       125 ~l~~L~~L~~L~l~~N~~l~~i~~~----~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~  199 (239)
T 2xwt_C          125 KVYSTDIFFILEITDNPYMTSIPVN----AFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA  199 (239)
T ss_dssp             TCCBCCSEEEEEEESCTTCCEECTT----TTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTT
T ss_pred             cccccccccEEECCCCcchhhcCcc----cccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH
Confidence            888888   9999999 99987754    588999999 9999999 677898875555889999554331111112234


Q ss_pred             cccc-cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEe
Q 046301          352 LRSL-MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW  394 (404)
Q Consensus       352 l~~L-~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  394 (404)
                      +..+ ++|+ .|++.++. +..++    ..  .+++|+.|.++.
T Consensus       200 ~~~l~~~L~-~L~l~~N~-l~~l~----~~--~~~~L~~L~l~~  235 (239)
T 2xwt_C          200 FGGVYSGPS-LLDVSQTS-VTALP----SK--GLEHLKELIARN  235 (239)
T ss_dssp             TTTCSBCCS-EEECTTCC-CCCCC----CT--TCTTCSEEECTT
T ss_pred             hhccccCCc-EEECCCCc-cccCC----hh--HhccCceeeccC
Confidence            6778 8899 89998743 22222    11  467888888753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.20  E-value=7.7e-11  Score=109.45  Aligned_cols=134  Identities=18%  Similarity=0.191  Sum_probs=62.3

Q ss_pred             hhhhhccCccccEEEecCCCcc---ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-
Q 046301          248 VFHVVPRLRQLRVVSLCGYKIV---QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-  323 (404)
Q Consensus       248 ~~~~~~~l~~L~~L~l~~~~~~---~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-  323 (404)
                      .+..+.++++|++|++++|.+.   ..|..+..+++|++|++++|.+..+|..     +.  ++|++|++++| .+..+ 
T Consensus       137 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-----~~--~~L~~L~l~~n-~l~~~~  208 (330)
T 1xku_A          137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-----LP--PSLTELHLDGN-KITKVD  208 (330)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-----CC--TTCSEEECTTS-CCCEEC
T ss_pred             CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-----cc--ccCCEEECCCC-cCCccC
Confidence            3444555666666666666554   2344555566666666666665555432     21  45555555555 23333 


Q ss_pred             cccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          324 PLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       324 p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      |..+.++++|++|++..+... ......+..+++|+ .|.+.++.- .    .+|..+..+++|+.|+++.|.
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~-~L~L~~N~l-~----~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLR-ELHLNNNKL-V----KVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCC-EEECCSSCC-S----SCCTTTTTCSSCCEEECCSSC
T ss_pred             HHHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCC-EEECCCCcC-c----cCChhhccCCCcCEEECCCCc
Confidence            334555555555533222111 01112344444555 555544321 1    223334455555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.20  E-value=1.1e-10  Score=113.85  Aligned_cols=126  Identities=20%  Similarity=0.262  Sum_probs=75.2

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT  331 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~  331 (404)
                      +..+++|+.|++++|.+..+|+ +..+++|+.|++++|.+..++.      ++.+++|++|++++| .+..++. ++.++
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n-~l~~~~~-~~~l~  331 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFN-NISDISP-VSSLT  331 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSS-CCSCCGG-GGGCT
T ss_pred             hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCC-cCCCchh-hccCc
Confidence            4555566666666666655554 5566666666666666654432      666777777777777 4554443 56667


Q ss_pred             cccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          332 SLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       332 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +|+.|++..+   ....+..+..+++|+ .|.+.++...    +..+  +..+++|+.|+++.|.
T Consensus       332 ~L~~L~l~~n---~l~~~~~l~~l~~L~-~L~l~~n~l~----~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          332 KLQRLFFYNN---KVSDVSSLANLTNIN-WLSAGHNQIS----DLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             TCCEEECCSS---CCCCCGGGTTCTTCC-EEECCSSCCC----BCGG--GTTCTTCCEEECCCEE
T ss_pred             cCCEeECCCC---ccCCchhhccCCCCC-EEeCCCCccC----ccch--hhcCCCCCEEeccCCc
Confidence            7777744332   222335666777777 7777665432    2222  6677778888777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.19  E-value=4.5e-12  Score=116.98  Aligned_cols=179  Identities=16%  Similarity=0.067  Sum_probs=113.5

Q ss_pred             CCCcceEEEEeccCccccccccc--cCCCCccEEEecccCccccccccchhhhhhhccC-----ccccEEEecCCCcccc
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGL--HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-----RQLRVVSLCGYKIVQL  271 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~l  271 (404)
                      ...++.+.+..+.+.... ...+  ..+++|+.|.+..+.       .... +..+..+     ++|++|++++|.+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~Ls~N~-------l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~  164 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTA-PPPLLEATGPDLNILNLRNVS-------WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF  164 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCC-CCCSSSCCSCCCSEEEEESCB-------CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred             cCCccEEEccCCcccchh-HHHHHHhcCCCccEEEccCCC-------Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence            356788888887765422 1222  678888888887765       1222 2334444     7888888888888866


Q ss_pred             C-cccccCCCcceEecCCCCcccCCCCCCCccc--cccccCceeecCCCCcccccc---cc-ccccccccccCceEeccC
Q 046301          272 P-NDIAELKHLRYLDFSHTAIEVLPESKLFPDV--GNLVNLRHLKDSHSNLLEEMP---LR-IGKLTSLRTLAKFVVGKG  344 (404)
Q Consensus       272 p-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~--~~l~~L~~L~l~~~~~l~~lp---~~-~~~l~~L~~L~~~~~~~~  344 (404)
                      | ..++.+++|++|++++|.+....  .+|..+  +.+++|++|++++| .+..+|   .. +.++++|++|++..+...
T Consensus       165 ~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  241 (312)
T 1wwl_A          165 SCEQVRVFPALSTLDLSDNPELGER--GLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLR  241 (312)
T ss_dssp             CTTTCCCCSSCCEEECCSCTTCHHH--HHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred             hHHHhccCCCCCEEECCCCCcCcch--HHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            5 67888888888888888754210  011123  78888888888888 566433   22 356678888855433322


Q ss_pred             CcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          345 NCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       345 ~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                      .......+..+++|+ .|.++++.- .    .+|..+.  ++|+.|+++.|.-
T Consensus       242 ~~~~~~~~~~l~~L~-~L~Ls~N~l-~----~ip~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          242 DAAGAPSCDWPSQLN-SLNLSFTGL-K----QVPKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             SSCCCSCCCCCTTCC-EEECTTSCC-S----SCCSSCC--SEEEEEECCSSCC
T ss_pred             cccchhhhhhcCCCC-EEECCCCcc-C----hhhhhcc--CCceEEECCCCCC
Confidence            211124455677888 888877542 2    2344444  6888899888763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.19  E-value=1e-11  Score=104.50  Aligned_cols=106  Identities=17%  Similarity=0.105  Sum_probs=70.4

Q ss_pred             ccccCCCCccEEEecccCccccccccchhhhhhhccCc-cccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCC
Q 046301          219 EGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLR-QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES  297 (404)
Q Consensus       219 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~  297 (404)
                      +.+.+++.|+.|.+.++.-       ..+ +. +..+. +|++|++++|.+..+ +.++.+++|++|++++|.+..+|..
T Consensus        13 ~~~~~~~~L~~L~l~~n~l-------~~i-~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~   82 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKI-------PVI-EN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEG   82 (176)
T ss_dssp             CEEECTTSCEEEECTTSCC-------CSC-CC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred             HhcCCcCCceEEEeeCCCC-------chh-HH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcc
Confidence            3445667777777776651       111 22 33333 788888888877766 5677777888888888877766543


Q ss_pred             CCCccccccccCceeecCCCCccccccc--cccccccccccCce
Q 046301          298 KLFPDVGNLVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKF  339 (404)
Q Consensus       298 ~~p~~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~~~  339 (404)
                          .+..+++|++|++++| .+..+|.  .++.+++|++|++.
T Consensus        83 ----~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           83 ----LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             ----HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECC
T ss_pred             ----hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEec
Confidence                2377788888888877 5677775  56777777777543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.19  E-value=7.1e-11  Score=115.17  Aligned_cols=172  Identities=21%  Similarity=0.284  Sum_probs=85.0

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK  279 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~  279 (404)
                      ..++.+.+..+.+....   .+.++++|+.|.+..+.       .....+  +.++++|++|++++|.+..+|+ +..++
T Consensus        68 ~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~l~~n~-------l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~  134 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQ-------IADITP--LANLTNLTGLTLFNNQITDIDP-LKNLT  134 (466)
T ss_dssp             TTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSC-------CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             cCCCEEECCCCccCCch---hhhccccCCEEECCCCc-------cccChh--hcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence            44555655555443322   25556666666665543       111222  5666666666666666666554 66666


Q ss_pred             CcceEecCCCCcccCCCC---------------CCCccccccccCceeecCCCCccccccccccccccccccCceEeccC
Q 046301          280 HLRYLDFSHTAIEVLPES---------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKG  344 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~~---------------~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~  344 (404)
                      +|++|++++|.+..++.-               .....+.++++|++|++++| .+..++ .+.++++|++|.+..+   
T Consensus       135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n---  209 (466)
T 1o6v_A          135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDIS-VLAKLTNLESLIATNN---  209 (466)
T ss_dssp             TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS---
T ss_pred             CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCCh-hhccCCCCCEEEecCC---
Confidence            666666666665544320               00011444455555555555 344443 2445555555533211   


Q ss_pred             CcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          345 NCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       345 ~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      ....+..+..+++|+ .|.+.++.. ...     ..+..+++|+.|+++.|.
T Consensus       210 ~l~~~~~~~~l~~L~-~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~  254 (466)
T 1o6v_A          210 QISDITPLGILTNLD-ELSLNGNQL-KDI-----GTLASLTNLTDLDLANNQ  254 (466)
T ss_dssp             CCCCCGGGGGCTTCC-EEECCSSCC-CCC-----GGGGGCTTCSEEECCSSC
T ss_pred             cccccccccccCCCC-EEECCCCCc-ccc-----hhhhcCCCCCEEECCCCc
Confidence            111222244455555 555555432 111     135556667777666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.18  E-value=4.3e-11  Score=120.56  Aligned_cols=83  Identities=25%  Similarity=0.247  Sum_probs=34.1

Q ss_pred             hccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKL  330 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l  330 (404)
                      +..+++|++|++++|.+..+ |..+..+++|++|++++|.+...+.   +..+.++++|++|++++|......|..++.+
T Consensus       372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  448 (606)
T 3t6q_A          372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHSLLDISSEQLFDGL  448 (606)
T ss_dssp             TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred             cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc---chhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence            33444444444444444322 3334444444444444444432211   0124444555555555442222223334444


Q ss_pred             ccccccC
Q 046301          331 TSLRTLA  337 (404)
Q Consensus       331 ~~L~~L~  337 (404)
                      ++|++|+
T Consensus       449 ~~L~~L~  455 (606)
T 3t6q_A          449 PALQHLN  455 (606)
T ss_dssp             TTCCEEE
T ss_pred             CCCCEEE
Confidence            4555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.18  E-value=5.8e-11  Score=102.66  Aligned_cols=147  Identities=22%  Similarity=0.182  Sum_probs=109.0

Q ss_pred             CCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCcc
Q 046301          224 VEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPD  302 (404)
Q Consensus       224 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~  302 (404)
                      .+.++.|.+.++.       ...++...|..+++|++|++++|.+..+|.. +..+++|++|++++|.+..+|..    .
T Consensus        27 ~~~l~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~   95 (208)
T 2o6s_A           27 PAQTTYLDLETNS-------LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG----V   95 (208)
T ss_dssp             CTTCSEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----T
T ss_pred             CCCCcEEEcCCCc-------cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh----H
Confidence            4688999988765       2345566788999999999999999988765 58899999999999999877643    4


Q ss_pred             ccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccc
Q 046301          303 VGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL  381 (404)
Q Consensus       303 ~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l  381 (404)
                      +..+++|++|++++| .+..+|.. +.++++|++|++..+... ......+..+++|+ .|.+.++..           .
T Consensus        96 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~-~L~l~~N~~-----------~  161 (208)
T 2o6s_A           96 FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQ-YIWLHDNPW-----------D  161 (208)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCC-EEECCSCCB-----------C
T ss_pred             hcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCcc-EEEecCCCe-----------e
Confidence            789999999999998 67777765 788999999966543222 11222367788888 888877532           2


Q ss_pred             cCccCCCceEEEec
Q 046301          382 NGKEKLEALSLKWV  395 (404)
Q Consensus       382 ~~l~~L~~L~l~~~  395 (404)
                      ..+++|+.|+++.+
T Consensus       162 ~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          162 CTCPGIRYLSEWIN  175 (208)
T ss_dssp             CCTTTTHHHHHHHH
T ss_pred             cCCCCHHHHHHHHH
Confidence            34455666655544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.18  E-value=1.6e-11  Score=120.27  Aligned_cols=109  Identities=17%  Similarity=0.176  Sum_probs=47.5

Q ss_pred             ccccCCCcceEecCCCCcccCCCCCCCcccc-ccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccc
Q 046301          274 DIAELKHLRYLDFSHTAIEVLPESKLFPDVG-NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKEL  352 (404)
Q Consensus       274 ~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l  352 (404)
                      .++.+++|++|++++|.+...+    |..+. .+++|++|++++| .+..+|. ...+++|++|++.++...  ..+..+
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~Ls~N~l~--~~~~~~  210 (487)
T 3oja_A          139 DEGCRSRVQYLDLKLNEIDTVN----FAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTLDLSSNKLA--FMGPEF  210 (487)
T ss_dssp             CGGGGSSEEEEECTTSCCCEEE----GGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEEECCSSCCC--EECGGG
T ss_pred             hhcCCCCCCEEECCCCCCCCcC----hHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCEEECCCCCCC--CCCHhH
Confidence            3444444444444444444321    11232 4455555555554 3444432 223445555533322111  122334


Q ss_pred             ccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          353 RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       353 ~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      ..+++|+ .|+++++.- .    .+|..+..+++|+.|+++.|.
T Consensus       211 ~~l~~L~-~L~Ls~N~l-~----~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          211 QSAAGVT-WISLRNNKL-V----LIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             GGGTTCS-EEECTTSCC-C----EECTTCCCCTTCCEEECTTCC
T ss_pred             cCCCCcc-EEEecCCcC-c----ccchhhccCCCCCEEEcCCCC
Confidence            5555555 566655322 1    133445556666666665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.18  E-value=7.1e-11  Score=114.75  Aligned_cols=162  Identities=19%  Similarity=0.212  Sum_probs=125.0

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK  279 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~  279 (404)
                      ..++.+.+..+.+...   +.+..+++|+.|.+..+.       ...+   .+..+++|++|++++|.+..+|  ++.++
T Consensus        42 ~~L~~L~Ls~n~l~~~---~~l~~l~~L~~L~Ls~n~-------l~~~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~  106 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNN-------ITTL---DLSQNTNLTYLACDSNKLTNLD--VTPLT  106 (457)
T ss_dssp             TTCCEEECCSSCCCCC---TTGGGCTTCSEEECCSSC-------CSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred             CCCCEEEccCCCcccC---hhhcccCCCCEEEccCCc-------CCeE---ccccCCCCCEEECcCCCCceee--cCCCC
Confidence            5678888887766553   467888999999998875       1122   1788899999999999999875  88999


Q ss_pred             CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccc
Q 046301          280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQ  359 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~  359 (404)
                      +|++|++++|.++.+|       ++++++|++|++++| .+..+|  ++++++|++|++..+..  ...+ .+..+++|+
T Consensus       107 ~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~--~~~~-~~~~l~~L~  173 (457)
T 3bz5_A          107 KLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKK--ITKL-DVTPQTQLT  173 (457)
T ss_dssp             TCCEEECCSSCCSCCC-------CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSC--CCCC-CCTTCTTCC
T ss_pred             cCCEEECCCCcCCeec-------CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCc--cccc-ccccCCcCC
Confidence            9999999999998764       889999999999998 677775  78889999995543321  1122 577888898


Q ss_pred             cceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          360 EKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       360 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                       .|++.++.- ..+    +  +..+++|+.|+++.|.-
T Consensus       174 -~L~ls~n~l-~~l----~--l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          174 -TLDCSFNKI-TEL----D--VSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             -EEECCSSCC-CCC----C--CTTCTTCCEEECCSSCC
T ss_pred             -EEECCCCcc-cee----c--cccCCCCCEEECcCCcC
Confidence             899987642 222    2  77889999999988763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.18  E-value=1.5e-11  Score=113.35  Aligned_cols=177  Identities=17%  Similarity=0.100  Sum_probs=125.2

Q ss_pred             CCCcceEEEEeccCccccccccccCC-----CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc---
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKV-----EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ---  270 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~-----~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---  270 (404)
                      ...++.+.+..+.+...  ...+..+     ++|+.|.+..+.       ....++..|.++++|++|++++|.+..   
T Consensus       120 l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAH-------SLNFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             SCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCS-------CCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             CCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCC-------CccchHHHhccCCCCCEEECCCCCcCcchH
Confidence            46788999998877664  2333344     899999998876       345566778899999999999999753   


Q ss_pred             cCccc--ccCCCcceEecCCCCcccCCCCCCCc-cccccccCceeecCCCCcccccc--ccccccccccccCceEeccCC
Q 046301          271 LPNDI--AELKHLRYLDFSHTAIEVLPESKLFP-DVGNLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTLAKFVVGKGN  345 (404)
Q Consensus       271 lp~~~--~~L~~L~~L~l~~~~l~~lp~~~~p~-~~~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~~~~~~~~~  345 (404)
                      +|..+  +.+++|++|++++|.+..++.  ++. .+.++++|++|++++| .+...+  ..+..+++|++|++..+... 
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-  266 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSG--VCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLK-  266 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHH--HHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHH--HHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccC-
Confidence            45555  889999999999999885442  121 2357799999999999 565544  34667889999965433222 


Q ss_pred             cCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCCC
Q 046301          346 CYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNST  398 (404)
Q Consensus       346 ~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  398 (404)
                       ..+..+.  ++|+ .|+++++.- ...    |. +..+++|+.|+++.|.-.
T Consensus       267 -~ip~~~~--~~L~-~L~Ls~N~l-~~~----p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          267 -QVPKGLP--AKLS-VLDLSYNRL-DRN----PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             -SCCSSCC--SEEE-EEECCSSCC-CSC----CC-TTTSCEEEEEECTTCTTT
T ss_pred             -hhhhhcc--CCce-EEECCCCCC-CCC----hh-HhhCCCCCEEeccCCCCC
Confidence             2223343  6788 888887542 222    33 788899999999877643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.17  E-value=1.9e-11  Score=99.83  Aligned_cols=124  Identities=19%  Similarity=0.190  Sum_probs=62.4

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-cCcccccCC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDIAELK  279 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~L~  279 (404)
                      .++.+.+..+.+........+..+++|+.|.+..+.       ....  ..+..+++|++|++++|.+.. +|..+..++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-------CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-------CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence            445555544443310111233455566666555543       1111  345555666666666666654 455555566


Q ss_pred             CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc----cccccccccccC
Q 046301          280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL----RIGKLTSLRTLA  337 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~  337 (404)
                      +|++|++++|.++.+|.   |..++.+++|++|++++| .+..+|.    .++.+++|+.|+
T Consensus        89 ~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             TCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEET
T ss_pred             CCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCccccc
Confidence            66666666666554331   123556666666666665 4555543    355555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.17  E-value=1.8e-11  Score=125.64  Aligned_cols=106  Identities=23%  Similarity=0.330  Sum_probs=73.7

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKL  299 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~  299 (404)
                      .+..++.|+.|.+..+.       ...++.. +.++++|++|+|++|.+..+|..++.|++|++|+|++|.|+.+|..  
T Consensus       219 ~~~~l~~L~~L~Ls~n~-------l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~--  288 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQ-------IFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE--  288 (727)
T ss_dssp             ---CCCCCCEEECTTSC-------CSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS--
T ss_pred             hhccCCCCcEEECCCCC-------CCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh--
Confidence            34566777777776655       1122222 3467778888888888777787788888888888888877766554  


Q ss_pred             CccccccccCceeecCCCCccccccccccccccccccCce
Q 046301          300 FPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF  339 (404)
Q Consensus       300 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~  339 (404)
                         +++|++|++|+|++| .+..+|.+|++|++|++|++.
T Consensus       289 ---~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          289 ---LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             ---GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECT
T ss_pred             ---hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCC
Confidence               778888888888877 677777777778888877554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.17  E-value=1.1e-10  Score=104.82  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=78.8

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKH  280 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~  280 (404)
                      .++.+.+..+.+..   ++.+..+++|+.|.+.++.       ....++  +..+++|++|++++|.+..+|....  ++
T Consensus        42 ~L~~L~l~~n~i~~---l~~l~~l~~L~~L~L~~N~-------i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~  107 (263)
T 1xeu_A           42 GVQNFNGDNSNIQS---LAGMQFFTNLKELHLSHNQ-------ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--AC  107 (263)
T ss_dssp             TCSEEECTTSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred             cCcEEECcCCCccc---chHHhhCCCCCEEECCCCc-------cCCChh--hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence            34555554444332   2345566677777766554       122222  6666777777777777666654333  66


Q ss_pred             cceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccccc
Q 046301          281 LRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQE  360 (404)
Q Consensus       281 L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  360 (404)
                      |++|++++|.++.++      .+..+++|++|++++| .+..+| .++.+++|++|++..   +....+..+..+++|+ 
T Consensus       108 L~~L~L~~N~l~~~~------~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~---N~i~~~~~l~~l~~L~-  175 (263)
T 1xeu_A          108 LSRLFLDNNELRDTD------SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHG---NEITNTGGLTRLKKVN-  175 (263)
T ss_dssp             CCEEECCSSCCSBSG------GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTT---SCCCBCTTSTTCCCCC-
T ss_pred             ccEEEccCCccCCCh------hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCC---CcCcchHHhccCCCCC-
Confidence            777777777666543      2666677777777666 556665 466666666664432   2222224455555565 


Q ss_pred             ceEEcC
Q 046301          361 KLTISG  366 (404)
Q Consensus       361 ~L~l~~  366 (404)
                      .|.+.+
T Consensus       176 ~L~l~~  181 (263)
T 1xeu_A          176 WIDLTG  181 (263)
T ss_dssp             EEEEEE
T ss_pred             EEeCCC
Confidence            555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.16  E-value=4.9e-12  Score=117.78  Aligned_cols=164  Identities=15%  Similarity=0.081  Sum_probs=122.8

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccccCCCcceEecCCC-CcccCCCC
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHT-AIEVLPES  297 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~-~l~~lp~~  297 (404)
                      ...++++|+.|.+..+.      ......+..+..+++|++|++++|.+. ..|..++.+++|++|++++| .+...   
T Consensus        88 ~~~~~~~L~~L~L~~~~------l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---  158 (336)
T 2ast_B           88 EHFSPFRVQHMDLSNSV------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---  158 (336)
T ss_dssp             SCCCCBCCCEEECTTCE------ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---
T ss_pred             hhccCCCCCEEEccCCC------cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---
Confidence            35578999999998764      223335667899999999999999987 67888999999999999999 67631   


Q ss_pred             CCCccccccccCceeecCCCCcccc--ccccccccc-cccccCceEecc-CC-cCCccccccccccccceEEcCCCCCCC
Q 046301          298 KLFPDVGNLVNLRHLKDSHSNLLEE--MPLRIGKLT-SLRTLAKFVVGK-GN-CYGLKELRSLMHLQEKLTISGLENVND  372 (404)
Q Consensus       298 ~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~-~L~~L~~~~~~~-~~-~~~~~~l~~L~~L~~~L~l~~~~~~~~  372 (404)
                      .+|..+.++++|++|++++|..+..  +|..+..++ +|++|++..+.. .. ......+.++++|+ .|.+.++..+. 
T Consensus       159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~-~L~l~~~~~l~-  236 (336)
T 2ast_B          159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV-HLDLSDSVMLK-  236 (336)
T ss_dssp             HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS-EEECTTCTTCC-
T ss_pred             HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC-EEeCCCCCcCC-
Confidence            1233488999999999999945553  677788899 999997654421 11 11233456788999 99998876332 


Q ss_pred             HhHHHhccccCccCCCceEEEecC
Q 046301          373 AEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       373 ~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                        +..+..+.++++|+.|++++|.
T Consensus       237 --~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          237 --NDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             --GGGGGGGGGCTTCCEEECTTCT
T ss_pred             --HHHHHHHhCCCCCCEeeCCCCC
Confidence              3344567889999999998885

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.16  E-value=4.7e-11  Score=119.29  Aligned_cols=82  Identities=29%  Similarity=0.378  Sum_probs=39.1

Q ss_pred             hhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc--c
Q 046301          249 FHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP--L  325 (404)
Q Consensus       249 ~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp--~  325 (404)
                      +..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|.     .  .+++|++|++++| .+..+|  .
T Consensus        69 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-----~--~l~~L~~L~Ls~N-~l~~l~~p~  140 (562)
T 3a79_B           69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-----C--PMASLRHLDLSFN-DFDVLPVCK  140 (562)
T ss_dssp             GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS-----C--CCTTCSEEECCSS-CCSBCCCCG
T ss_pred             hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc-----c--ccccCCEEECCCC-CccccCchH
Confidence            33445555555555555555433 3344555555555555555554432     1  4455555555555 333332  3


Q ss_pred             cccccccccccCc
Q 046301          326 RIGKLTSLRTLAK  338 (404)
Q Consensus       326 ~~~~l~~L~~L~~  338 (404)
                      .++++++|++|++
T Consensus       141 ~~~~l~~L~~L~L  153 (562)
T 3a79_B          141 EFGNLTKLTFLGL  153 (562)
T ss_dssp             GGGGCTTCCEEEE
T ss_pred             hhcccCcccEEec
Confidence            4555555555533

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.15  E-value=8e-11  Score=116.35  Aligned_cols=155  Identities=16%  Similarity=0.116  Sum_probs=104.6

Q ss_pred             cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc---cCcccccCCCcceEecCCCCccc-CCCC
Q 046301          222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ---LPNDIAELKHLRYLDFSHTAIEV-LPES  297 (404)
Q Consensus       222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp~~~~~L~~L~~L~l~~~~l~~-lp~~  297 (404)
                      ..++.|+.|.+..+.       .....+..+..+++|++|++++|.+..   +|..++.+++|++|++++|.+.. +|..
T Consensus       321 ~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          321 SKISPFLHLDFSNNL-------LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             SSCCCCCEEECCSSC-------CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred             hhCCcccEEEeECCc-------cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence            466777788777655       223344567788888888888888774   45667888888888888888775 5542


Q ss_pred             CCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHH
Q 046301          298 KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAK  377 (404)
Q Consensus       298 ~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~  377 (404)
                          .+..+++|++|++++|.....+|..+.  ++|++|++..+...  ..+..+..+++|+ .|.+.++.- ..++.  
T Consensus       394 ----~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~-~L~L~~N~l-~~l~~--  461 (520)
T 2z7x_B          394 ----DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK--SIPKQVVKLEALQ-ELNVASNQL-KSVPD--  461 (520)
T ss_dssp             ----SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC--CCCGGGGGCTTCC-EEECCSSCC-CCCCT--
T ss_pred             ----hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc--ccchhhhcCCCCC-EEECCCCcC-CccCH--
Confidence                366778888888888854456665554  57777755433222  2334466788888 888877542 22222  


Q ss_pred             hccccCccCCCceEEEecC
Q 046301          378 EAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       378 ~~~l~~l~~L~~L~l~~~~  396 (404)
                       ..+..+++|+.|+++.|.
T Consensus       462 -~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          462 -GIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             -TTTTTCTTCCEEECCSSC
T ss_pred             -HHhccCCcccEEECcCCC
Confidence             237778889999888775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.14  E-value=1e-10  Score=108.81  Aligned_cols=130  Identities=19%  Similarity=0.214  Sum_probs=59.0

Q ss_pred             hhccCccccEEEecCCCcc---ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-cc
Q 046301          251 VVPRLRQLRVVSLCGYKIV---QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LR  326 (404)
Q Consensus       251 ~~~~l~~L~~L~l~~~~~~---~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~  326 (404)
                      .|.++++|++|++++|.+.   ..|..+..+ +|++|++++|.+..+|..     +.  ++|++|++++| .+..++ ..
T Consensus       142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-----~~--~~L~~L~l~~n-~i~~~~~~~  212 (332)
T 2ft3_A          142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-----LP--ETLNELHLDHN-KIQAIELED  212 (332)
T ss_dssp             GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-----SC--SSCSCCBCCSS-CCCCCCTTS
T ss_pred             HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-----cc--CCCCEEECCCC-cCCccCHHH
Confidence            3444455555555555443   123333333 444444444444443322     21  45555555555 333333 34


Q ss_pred             ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          327 IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       327 ~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +.++++|++|++..+... ......+..+++|+ .|.+.++.- .    .+|..+..+++|+.|+++.|.
T Consensus       213 l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~l-~----~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLR-ELHLDNNKL-S----RVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             STTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCC-EEECCSSCC-C----BCCTTGGGCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCCcCC-cCChhHhhCCCCCC-EEECCCCcC-e----ecChhhhcCccCCEEECCCCC
Confidence            555666666644322211 11112345555555 555554321 1    233345555666666665553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.14  E-value=6.7e-11  Score=111.40  Aligned_cols=155  Identities=17%  Similarity=0.174  Sum_probs=103.3

Q ss_pred             cCCCcceEEEEeccCcccccccccc-CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-cc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLH-KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DI  275 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~  275 (404)
                      ++..++.|.+..+.+..+.. ..+. ++++|+.|.+..+.       ...+.+..|.++++|++|+|++|.+..+|+ .+
T Consensus        37 ~~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~-------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  108 (361)
T 2xot_A           37 LPSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNH-------LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF  108 (361)
T ss_dssp             CCTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCc-------CCccChhhccCCCCCCEEECCCCcCCcCCHHHh
Confidence            34557778777776655332 2233 78888888887765       344555668888888899998888887765 47


Q ss_pred             ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc----cccccccccCceEeccCCcCCccc
Q 046301          276 AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI----GKLTSLRTLAKFVVGKGNCYGLKE  351 (404)
Q Consensus       276 ~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~----~~l~~L~~L~~~~~~~~~~~~~~~  351 (404)
                      ..+++|++|+|++|.|..++.    ..+..+++|++|++++| .+..+|..+    .++++|+.|++..+... ......
T Consensus       109 ~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~  182 (361)
T 2xot_A          109 SDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD  182 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHH
T ss_pred             CCCcCCCEEECCCCcccEECH----HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHH
Confidence            788888889998888886643    25888888888888888 777888764    56778888855433221 111223


Q ss_pred             cccccc--cccceEEcCC
Q 046301          352 LRSLMH--LQEKLTISGL  367 (404)
Q Consensus       352 l~~L~~--L~~~L~l~~~  367 (404)
                      +..+..  ++ .|.+.++
T Consensus       183 ~~~l~~~~l~-~l~l~~N  199 (361)
T 2xot_A          183 LQKLPAWVKN-GLYLHNN  199 (361)
T ss_dssp             HHHSCHHHHT-TEECCSS
T ss_pred             hhhccHhhcc-eEEecCC
Confidence            444544  24 5666553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.14  E-value=3e-10  Score=110.30  Aligned_cols=166  Identities=17%  Similarity=0.143  Sum_probs=90.6

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK  279 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~  279 (404)
                      ..++.+.+..+.+..+    .+..+++|+.|.+..+.       ....   .+.++++|++|++++|.+..+|  ++.++
T Consensus        64 ~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~-------l~~~---~~~~l~~L~~L~L~~N~l~~l~--~~~l~  127 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL----DLSQNTNLTYLACDSNK-------LTNL---DVTPLTKLTYLNCDTNKLTKLD--VSQNP  127 (457)
T ss_dssp             TTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSC-------CSCC---CCTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred             CCCCEEEccCCcCCeE----ccccCCCCCEEECcCCC-------Ccee---ecCCCCcCCEEECCCCcCCeec--CCCCC
Confidence            4456666665554442    14556666666666554       1111   1556666666666666666554  56666


Q ss_pred             CcceEecCCCCcccCCCCCCC---------------ccccccccCceeecCCCCccccccccccccccccccCceEeccC
Q 046301          280 HLRYLDFSHTAIEVLPESKLF---------------PDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKG  344 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~~~~p---------------~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~  344 (404)
                      +|++|++++|.++.++-..++               -.++.+++|++|++++| .+..+|  ++.+++|+.|.+..+.. 
T Consensus       128 ~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~l-  203 (457)
T 3bz5_A          128 LLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNI-  203 (457)
T ss_dssp             TCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSCC-
T ss_pred             cCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCCcC-
Confidence            666666666666554311000               01445555666666555 455555  55555666664332211 


Q ss_pred             CcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          345 NCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       345 ~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                        ..+ .+..+++|+ .|+++++.- ..    ++  +..+++|+.|+++.|.
T Consensus       204 --~~~-~l~~l~~L~-~L~Ls~N~l-~~----ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          204 --TKL-DLNQNIQLT-FLDCSSNKL-TE----ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             --SCC-CCTTCTTCS-EEECCSSCC-SC----CC--CTTCTTCSEEECCSSC
T ss_pred             --Cee-ccccCCCCC-EEECcCCcc-cc----cC--ccccCCCCEEEeeCCc
Confidence              122 356666777 777766432 22    22  6677888888887775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.14  E-value=2.5e-11  Score=120.85  Aligned_cols=126  Identities=21%  Similarity=0.252  Sum_probs=93.1

Q ss_pred             cccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccccccccccc
Q 046301          257 QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL  336 (404)
Q Consensus       257 ~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L  336 (404)
                      .|++|++++|.++.+|. ++.+++|++|++++|.++.+|..     ++++++|++|++++| .+..+| +++++++|++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDN-ALENVD-GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGG-----GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEE
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchh-----hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEE
Confidence            57889999999999887 99999999999999999877654     999999999999998 777888 79999999999


Q ss_pred             CceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEE
Q 046301          337 AKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSL  392 (404)
Q Consensus       337 ~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l  392 (404)
                      ++..+.......+..+..|++|+ .|.+.++.- ...+......+..+++|+.|++
T Consensus       514 ~Ls~N~l~~~~~p~~l~~l~~L~-~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPLVSCPRLV-LLNLQGNSL-CQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCC-EEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ECCCCCCCCCCCcHHHhcCCCCC-EEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence            66544332211156788899999 899887532 1111111122334677887753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.14  E-value=8.9e-11  Score=119.95  Aligned_cols=141  Identities=16%  Similarity=0.217  Sum_probs=84.4

Q ss_pred             hhhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCc----cccccccCceeecCCCCccccc
Q 046301          249 FHVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFP----DVGNLVNLRHLKDSHSNLLEEM  323 (404)
Q Consensus       249 ~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~----~~~~l~~L~~L~l~~~~~l~~l  323 (404)
                      +..+..+++|++|++++|.+..+|+. +..+++|++|++++|.+..++...+|.    .+.++++|++|++++| .+..+
T Consensus       473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i  551 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI  551 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC
T ss_pred             CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC
Confidence            34466667777777777777665543 666777777777777776655443332    2667777777777777 56677


Q ss_pred             ccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcccc-CccCCCceEEEecC
Q 046301          324 PLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN-GKEKLEALSLKWVN  396 (404)
Q Consensus       324 p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~  396 (404)
                      |.. ++++++|++|++..+... ......+..+++|+ .|.+.++.- ...   .+..+. .+++|+.|+++.|.
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~-~L~L~~N~l-~~~---~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLK-SLNLQKNLI-TSV---EKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECTTSCC-CBC---CHHHHHHHHTTCSEEECTTCC
T ss_pred             CHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCC-EEECCCCcC-Ccc---ChhHhcccccccCEEEccCCC
Confidence            754 677777777755332221 11122356677777 777776532 211   122222 45677777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.13  E-value=6.3e-11  Score=109.11  Aligned_cols=177  Identities=16%  Similarity=0.069  Sum_probs=94.1

Q ss_pred             CCcceEEEEeccCccccc-c--ccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc---cC-
Q 046301          200 RNLRHLSYLTSQFDGIKR-F--EGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ---LP-  272 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~-~--~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp-  272 (404)
                      ..++.+.+..+.+..... .  ..+..+++|+.|.+..+.       ....++..+..+++|++|++++|.+..   ++ 
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  189 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-------SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA  189 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-------SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT
T ss_pred             CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-------cchhhHHHhccCCCCCEEECCCCCCccchhhhH
Confidence            345555565555443111 0  122345666666665554       233444556666666677766666532   22 


Q ss_pred             -cccccCCCcceEecCCCCcccCCCCCCCcc-ccccccCceeecCCCCccccc-ccccccc---ccccccCceEeccCCc
Q 046301          273 -NDIAELKHLRYLDFSHTAIEVLPESKLFPD-VGNLVNLRHLKDSHSNLLEEM-PLRIGKL---TSLRTLAKFVVGKGNC  346 (404)
Q Consensus       273 -~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~-~~~l~~L~~L~l~~~~~l~~l-p~~~~~l---~~L~~L~~~~~~~~~~  346 (404)
                       ..++.+++|++|++++|.++.++..  +.. +..+++|++|++++| .+..+ |..++.+   ++|++|++..+...  
T Consensus       190 ~~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--  264 (310)
T 4glp_A          190 ALCPHKFPAIQNLALRNTGMETPTGV--CAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE--  264 (310)
T ss_dssp             TSCTTSSCCCCSCBCCSSCCCCHHHH--HHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC--
T ss_pred             HHhhhcCCCCCEEECCCCCCCchHHH--HHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC--
Confidence             2235666666777766666544321  111 356677777777777 44444 6666665   46777754333221  


Q ss_pred             CCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCC
Q 046301          347 YGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       347 ~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                      ..+..+.  ++|+ .|+++++.- ..+    + .+..+++|+.|+++.|.-
T Consensus       265 ~lp~~~~--~~L~-~L~Ls~N~l-~~~----~-~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          265 QVPKGLP--AKLR-VLDLSSNRL-NRA----P-QPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCCSCCC--SCCS-CEECCSCCC-CSC----C-CTTSCCCCSCEECSSTTT
T ss_pred             chhhhhc--CCCC-EEECCCCcC-CCC----c-hhhhCCCccEEECcCCCC
Confidence            1122232  5677 777766432 221    1 145667788888876653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.13  E-value=5.9e-11  Score=121.79  Aligned_cols=115  Identities=23%  Similarity=0.225  Sum_probs=94.1

Q ss_pred             hhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc
Q 046301          247 LVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR  326 (404)
Q Consensus       247 ~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~  326 (404)
                      .++..+..+..|++|+|++|.+..+|..+..+++|++|+|++|.|+.+|..     +++|++|++|+|++| .+..+|..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~Ls~N-~l~~lp~~  288 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-----IKNLSNLRVLDLSHN-RLTSLPAE  288 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-----GGGGTTCCEEECTTS-CCSSCCSS
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-----hhCCCCCCEEeCcCC-cCCccChh
Confidence            456778999999999999999999999999999999999999999977654     999999999999999 67899999


Q ss_pred             ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCC
Q 046301          327 IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENV  370 (404)
Q Consensus       327 ~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~  370 (404)
                      |++|++|++|++..+...  ..+..+.+|++|+ .|.+.++...
T Consensus       289 ~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~-~L~L~~N~l~  329 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQ-FLGVEGNPLE  329 (727)
T ss_dssp             GGGGTTCSEEECCSSCCC--CCCSSTTSCTTCC-CEECTTSCCC
T ss_pred             hcCCCCCCEEECCCCCCC--ccChhhhcCCCcc-EEeCCCCccC
Confidence            999999999976544332  3445688999999 9999886543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.12  E-value=1.7e-10  Score=108.14  Aligned_cols=181  Identities=19%  Similarity=0.130  Sum_probs=94.9

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccc-------------------cccchhhhhhhccCccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTF-------------------YVTNNLVFHVVPRLRQL  258 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~L  258 (404)
                      ++.+++.|.+..+.+..+. ...+.++++|+.|.+.++.-....                   .....+++..|..+++|
T Consensus        28 l~~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           28 LPRNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             CCTTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             cCCCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence            4566778888777665432 124567788888887765411000                   01122334456666777


Q ss_pred             cEEEecCCCccccCcc-ccc-------------------------C-CCcceEecCCCCcccCCCCCCCccccccccCce
Q 046301          259 RVVSLCGYKIVQLPND-IAE-------------------------L-KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRH  311 (404)
Q Consensus       259 ~~L~l~~~~~~~lp~~-~~~-------------------------L-~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~  311 (404)
                      ++|++++|.+..+|+. +..                         + ..+++|++++|+|+.+|..     +....+|++
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-----~f~~~~L~~  181 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-----AFNGTQLDE  181 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-----SSTTEEEEE
T ss_pred             ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh-----hccccchhH
Confidence            7777776665544321 111                         1 1244455555555544433     555566777


Q ss_pred             eecCCCCcccccccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCce
Q 046301          312 LKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEAL  390 (404)
Q Consensus       312 L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L  390 (404)
                      |++.+++.+..+|.. +..+++|++|++..+   ....++. ..+.+|+ .|.+.++.++..++     .+.++++|+.+
T Consensus       182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N---~l~~lp~-~~~~~L~-~L~~l~~~~l~~lP-----~l~~l~~L~~l  251 (350)
T 4ay9_X          182 LNLSDNNNLEELPNDVFHGASGPVILDISRT---RIHSLPS-YGLENLK-KLRARSTYNLKKLP-----TLEKLVALMEA  251 (350)
T ss_dssp             EECTTCTTCCCCCTTTTTTEECCSEEECTTS---CCCCCCS-SSCTTCC-EEECTTCTTCCCCC-----CTTTCCSCCEE
T ss_pred             HhhccCCcccCCCHHHhccCcccchhhcCCC---CcCccCh-hhhccch-HhhhccCCCcCcCC-----CchhCcChhhC
Confidence            777665567777654 567777777744322   1111111 1233444 44444444443333     25667777777


Q ss_pred             EEEe
Q 046301          391 SLKW  394 (404)
Q Consensus       391 ~l~~  394 (404)
                      ++.+
T Consensus       252 ~l~~  255 (350)
T 4ay9_X          252 SLTY  255 (350)
T ss_dssp             ECSC
T ss_pred             cCCC
Confidence            7653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.12  E-value=6.6e-11  Score=108.97  Aligned_cols=181  Identities=13%  Similarity=-0.042  Sum_probs=124.2

Q ss_pred             CcceEEEEeccCccccccccc--cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC-ccccc
Q 046301          201 NLRHLSYLTSQFDGIKRFEGL--HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP-NDIAE  277 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~--~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~  277 (404)
                      .++.+.+..+.+.... ...+  .++++|+.|.+..+.-..   .........+..+++|++|++++|.+..+| ..++.
T Consensus        92 ~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~Ls~n~i~~---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           92 RLKELTLEDLKITGTM-PPLPLEATGLALSSLRLRNVSWAT---GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             CCCEEEEESCCCBSCC-CCCSSSCCCBCCSSCEEESCCCSS---TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             ceeEEEeeCCEeccch-hhhhhhccCCCCCEEEeecccccc---hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            4788888887765432 2233  678999999998876111   001112234558999999999999998665 67889


Q ss_pred             CCCcceEecCCCCccc---CCCCCCCccccccccCceeecCCCCcccccccc----ccccccccccCceEeccCCcCCcc
Q 046301          278 LKHLRYLDFSHTAIEV---LPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR----IGKLTSLRTLAKFVVGKGNCYGLK  350 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~---lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~----~~~l~~L~~L~~~~~~~~~~~~~~  350 (404)
                      +++|++|++++|++..   ++..   ..++.+++|++|++++| .+..+|..    ++++++|++|++..+.... ..+.
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~---~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~  242 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAA---LCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRA-TVNP  242 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTT---SCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CCCS
T ss_pred             CCCCCEEECCCCCCccchhhhHH---HhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCc-cchh
Confidence            9999999999998653   3221   22578999999999999 67766653    5678999999665443322 1133


Q ss_pred             ccccc---cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCCC
Q 046301          351 ELRSL---MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNST  398 (404)
Q Consensus       351 ~l~~L---~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  398 (404)
                      .+..+   ++|+ .|.++++.- ..    +|..+.  ++|+.|+|++|.-.
T Consensus       243 ~~~~~~~~~~L~-~L~Ls~N~l-~~----lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          243 SAPRCMWSSALN-SLNLSFAGL-EQ----VPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             CCSSCCCCTTCC-CEECCSSCC-CS----CCSCCC--SCCSCEECCSCCCC
T ss_pred             hHHhccCcCcCC-EEECCCCCC-Cc----hhhhhc--CCCCEEECCCCcCC
Confidence            44444   6898 899987543 22    344443  79999999998744

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.12  E-value=3e-11  Score=113.75  Aligned_cols=155  Identities=18%  Similarity=0.119  Sum_probs=109.2

Q ss_pred             CCccEEEecccCccccccccchhhhhhhc-cCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCcc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVP-RLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPD  302 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~  302 (404)
                      +.++.|.+..+.       ...+....+. ++++|++|++++|.+..+|+ .+..+++|++|+|++|.++.++..    .
T Consensus        39 ~~l~~L~Ls~N~-------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~  107 (361)
T 2xot_A           39 SYTALLDLSHNN-------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF----L  107 (361)
T ss_dssp             TTCSEEECCSSC-------CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----T
T ss_pred             CCCCEEECCCCC-------CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH----H
Confidence            457888887765       3445556676 89999999999999998764 589999999999999999987653    5


Q ss_pred             ccccccCceeecCCCCccccc-cccccccccccccCceEeccCCc--CCccccccccccccceEEcCCCCCCCHhHHHhc
Q 046301          303 VGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGKGNC--YGLKELRSLMHLQEKLTISGLENVNDAEDAKEA  379 (404)
Q Consensus       303 ~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~~~~~~~~~~--~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~  379 (404)
                      +.++++|++|++++| .+..+ |..+.++++|+.|++..+.....  ..+..+..+++|+ .|++.++.- ..++   +.
T Consensus       108 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~-~L~L~~N~l-~~l~---~~  181 (361)
T 2xot_A          108 FSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM-LLDLSSNKL-KKLP---LT  181 (361)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC-EEECCSSCC-CCCC---HH
T ss_pred             hCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC-EEECCCCCC-CccC---HH
Confidence            889999999999999 56666 55699999999996654332210  0111125688888 899887542 2322   22


Q ss_pred             cccCccC--CCceEEEecC
Q 046301          380 QLNGKEK--LEALSLKWVN  396 (404)
Q Consensus       380 ~l~~l~~--L~~L~l~~~~  396 (404)
                      .+..+.+  |+.|+|+.|.
T Consensus       182 ~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          182 DLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             HHHHSCHHHHTTEECCSSC
T ss_pred             HhhhccHhhcceEEecCCC
Confidence            3444444  4778887654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=1.4e-12  Score=112.00  Aligned_cols=129  Identities=19%  Similarity=0.212  Sum_probs=98.9

Q ss_pred             hhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccc
Q 046301          250 HVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGK  329 (404)
Q Consensus       250 ~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~  329 (404)
                      ..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|.     .+..+++|++|++++| .+..+| .+++
T Consensus        42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~-----~~~~~~~L~~L~L~~N-~l~~l~-~~~~  113 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN-----LDAVADTLEELWISYN-QIASLS-GIEK  113 (198)
T ss_dssp             HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSS-----HHHHHHHCSEEEEEEE-ECCCHH-HHHH
T ss_pred             HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccc-----hhhcCCcCCEEECcCC-cCCcCC-cccc
Confidence            36788899999999999998888 88999999999999998887664     3788899999999998 777887 6888


Q ss_pred             cccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhc----------cccCccCCCceE
Q 046301          330 LTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEA----------QLNGKEKLEALS  391 (404)
Q Consensus       330 l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~----------~l~~l~~L~~L~  391 (404)
                      +++|++|++..+.......+..+..+++|+ .|.+.++.    +.+..+.          .+..+++|+.|+
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~-~L~l~~N~----l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLE-DLLLAGNP----LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCS-EEEECSCH----HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCC-EEEecCCc----cccccccccchHHHHHHHHHhCCCcEEEC
Confidence            899999976655433212234577888888 88887642    3333332          377888899876

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.12  E-value=7.3e-11  Score=99.22  Aligned_cols=127  Identities=18%  Similarity=0.132  Sum_probs=101.0

Q ss_pred             CCCcceEEEEeccCccccccccccCCC-CccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccc-c
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVE-YLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDI-A  276 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~-~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~  276 (404)
                      ...++.+.+..+.+..+   +.+..+. .|+.|.+.++.       ...+  ..+..+++|++|++++|.+..+|+.+ .
T Consensus        18 ~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~-------l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNE-------IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             TTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSC-------CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             cCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCC-------CCcc--cccccCCCCCEEECCCCcccccCcchhh
Confidence            34677777777766543   3444554 99999998876       1122  46889999999999999999998776 8


Q ss_pred             cCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc----ccccccccccCceEe
Q 046301          277 ELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR----IGKLTSLRTLAKFVV  341 (404)
Q Consensus       277 ~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~----~~~l~~L~~L~~~~~  341 (404)
                      .+++|++|++++|.+..+|.-   ..+..+++|++|++++| .+..+|..    ++.+++|+.|++..+
T Consensus        86 ~l~~L~~L~L~~N~i~~~~~~---~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           86 ALPDLTELILTNNSLVELGDL---DPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HCTTCCEEECCSCCCCCGGGG---GGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             cCCCCCEEECCCCcCCcchhh---HhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            999999999999999877641   14889999999999999 77888875    888999999977654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.11  E-value=4.7e-11  Score=110.34  Aligned_cols=122  Identities=14%  Similarity=0.112  Sum_probs=69.7

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-----
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-----  274 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-----  274 (404)
                      ..++.+.+..+.+.... ...+.++++|+.|.+..+.-       ...++  +..+++|++|++++|.+..+|..     
T Consensus        34 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-------~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~  103 (317)
T 3o53_A           34 WNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVL-------YETLD--LESLSTLRTLDLNNNYVQELLVGPSIET  103 (317)
T ss_dssp             GGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCC-------EEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred             CCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcC-------Ccchh--hhhcCCCCEEECcCCccccccCCCCcCE
Confidence            46788888777665532 24567889999999987751       11222  77889999999999887755421     


Q ss_pred             ------------cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccc-ccccccccc
Q 046301          275 ------------IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRI-GKLTSLRTL  336 (404)
Q Consensus       275 ------------~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~-~~l~~L~~L  336 (404)
                                  ...+++|++|++++|.+..++.    ..++.+++|++|++++| .+..+ |..+ ..+++|++|
T Consensus       104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L  174 (317)
T 3o53_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRD----LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHL  174 (317)
T ss_dssp             EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG----BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEE
T ss_pred             EECCCCccCCcCccccCCCCEEECCCCCCCCccc----hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEE
Confidence                        0112334444444444443322    13555555666666555 33333 2223 244555555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.09  E-value=1.4e-10  Score=99.11  Aligned_cols=106  Identities=25%  Similarity=0.313  Sum_probs=82.6

Q ss_pred             ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc-ccccccccc
Q 046301          256 RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLR  334 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~  334 (404)
                      ++|++|++++|.+..+|..+..+++|++|++++|.|+.++..    .+.++++|++|++++| .+..+|. .+..+++|+
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ----SFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHh----HccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCC
Confidence            579999999999999999999999999999999999877643    5889999999999998 6777765 588999999


Q ss_pred             ccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301          335 TLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE  368 (404)
Q Consensus       335 ~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~  368 (404)
                      +|++..+... ......+..+++|+ .|.+.+..
T Consensus       106 ~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~  137 (193)
T 2wfh_A          106 LLSLHGNDIS-VVPEGAFNDLSALS-HLAIGANP  137 (193)
T ss_dssp             EEECCSSCCC-BCCTTTTTTCTTCC-EEECCSSC
T ss_pred             EEECCCCCCC-eeChhhhhcCcccc-EEEeCCCC
Confidence            9966543222 11122367778888 88887643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.08  E-value=1.3e-10  Score=99.26  Aligned_cols=105  Identities=15%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             cccEEEecCCCccccCcc--cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccc
Q 046301          257 QLRVVSLCGYKIVQLPND--IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL  333 (404)
Q Consensus       257 ~L~~L~l~~~~~~~lp~~--~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L  333 (404)
                      .|++|++++|.+..+|+.  ++.+++|++|++++|.++.++    |..+.++++|++|++++| .+..+|.. ++++++|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L  104 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQL  104 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC----HhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCC
Confidence            789999999999888764  888999999999999988663    235888999999999998 56666554 8888999


Q ss_pred             cccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301          334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE  368 (404)
Q Consensus       334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~  368 (404)
                      ++|++..+... ...+..+..+++|+ .|.+.++.
T Consensus       105 ~~L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~  137 (192)
T 1w8a_A          105 KTLNLYDNQIS-CVMPGSFEHLNSLT-SLNLASNP  137 (192)
T ss_dssp             CEEECCSSCCC-EECTTSSTTCTTCC-EEECTTCC
T ss_pred             CEEECCCCcCC-eeCHHHhhcCCCCC-EEEeCCCC
Confidence            99866543222 22345577788888 88887754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.07  E-value=4.8e-11  Score=110.30  Aligned_cols=169  Identities=11%  Similarity=-0.000  Sum_probs=99.4

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-Cccc-ccC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDI-AEL  278 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~-~~L  278 (404)
                      .++.+.+..+.+....    ...++.|+.|.+..+.       .....+..+..+++|++|++++|.+..+ |..+ ..+
T Consensus       100 ~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  168 (317)
T 3o53_A          100 SIETLHAANNNISRVS----CSRGQGKKNIYLANNK-------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS  168 (317)
T ss_dssp             TCCEEECCSSCCSEEE----ECCCSSCEEEECCSSC-------CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred             CcCEEECCCCccCCcC----ccccCCCCEEECCCCC-------CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence            4444554444433321    1235566777666554       2334444566777777777777777754 3334 357


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL  358 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L  358 (404)
                      ++|++|++++|.++.+|.      ...+++|++|++++| .+..+|..+..+++|++|++..+...  ..+..+..+++|
T Consensus       169 ~~L~~L~L~~N~l~~~~~------~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L  239 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNL  239 (317)
T ss_dssp             TTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTC
T ss_pred             CcCCEEECCCCcCccccc------ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCccc--chhhHhhcCCCC
Confidence            777777777777776643      334777777777777 66777777777777777754332221  122345666777


Q ss_pred             ccceEEcCCCCCCCHhHHHhccccCccCCCceEEE
Q 046301          359 QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLK  393 (404)
Q Consensus       359 ~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  393 (404)
                      + .|.+.++.-.   .+..+..+..+++|+.|+++
T Consensus       240 ~-~L~l~~N~~~---~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          240 E-HFDLRGNGFH---CGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             C-EEECTTCCCB---HHHHHHHHHTCHHHHHHHHH
T ss_pred             C-EEEccCCCcc---CcCHHHHHhccccceEEECC
Confidence            7 7777664321   13444555666666666655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.07  E-value=5.2e-10  Score=111.65  Aligned_cols=155  Identities=14%  Similarity=0.039  Sum_probs=103.0

Q ss_pred             cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccC---cccccCCCcceEecCCCCccc-CCCC
Q 046301          222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLP---NDIAELKHLRYLDFSHTAIEV-LPES  297 (404)
Q Consensus       222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp---~~~~~L~~L~~L~l~~~~l~~-lp~~  297 (404)
                      ..++.|+.|.+..+.       .....+..+.++++|++|++++|.+..+|   ..++.+++|++|++++|.+.. +|..
T Consensus       350 ~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  422 (562)
T 3a79_B          350 PSPSSFTFLNFTQNV-------FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR  422 (562)
T ss_dssp             SSCCCCCEEECCSSC-------CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred             cCCCCceEEECCCCc-------cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence            466777888777665       22334556778888888888888887554   457788888888888888875 5543


Q ss_pred             CCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHH
Q 046301          298 KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAK  377 (404)
Q Consensus       298 ~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~  377 (404)
                          .+..+++|++|++++|.....+|..+.  ++|++|++..+...  ..+..+..+++|+ .|++.++.- ..++.  
T Consensus       423 ----~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~--~ip~~~~~l~~L~-~L~L~~N~l-~~l~~--  490 (562)
T 3a79_B          423 ----TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM--SIPKDVTHLQALQ-ELNVASNQL-KSVPD--  490 (562)
T ss_dssp             ----CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC--CCCTTTTSSCCCS-EEECCSSCC-CCCCT--
T ss_pred             ----hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc--ccChhhcCCCCCC-EEECCCCCC-CCCCH--
Confidence                366778888888888844455555443  57777755433221  2233455777888 888877542 22221  


Q ss_pred             hccccCccCCCceEEEecC
Q 046301          378 EAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       378 ~~~l~~l~~L~~L~l~~~~  396 (404)
                       ..+..+++|+.|+++.|.
T Consensus       491 -~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          491 -GVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             -TSTTTCTTCCCEECCSCC
T ss_pred             -HHHhcCCCCCEEEecCCC
Confidence             237778888888887775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.05  E-value=1.2e-10  Score=114.07  Aligned_cols=169  Identities=11%  Similarity=-0.015  Sum_probs=118.9

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-cCcccc-c
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDIA-E  277 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~-~  277 (404)
                      ..++.|.+..+.+....    ...++.|+.|.+..+.       .....+..+.++++|++|++++|.+.. .|..+. .
T Consensus        99 ~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~  167 (487)
T 3oja_A           99 PSIETLHAANNNISRVS----CSRGQGKKNIYLANNK-------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS  167 (487)
T ss_dssp             TTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSC-------CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             CCcCEEECcCCcCCCCC----ccccCCCCEEECCCCC-------CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence            45566666665554432    1245778888887765       344556667888999999999999885 566665 7


Q ss_pred             CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccc
Q 046301          278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMH  357 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~  357 (404)
                      +++|++|++++|.+..+|.      ...+++|++|++++| .+..+|+.++.+++|+.|++..+...  ..+..+..+++
T Consensus       168 l~~L~~L~Ls~N~l~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~  238 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQN  238 (487)
T ss_dssp             TTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTT
T ss_pred             CCcccEEecCCCccccccc------cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCc--ccchhhccCCC
Confidence            8999999999999887753      446899999999998 78888888888999999865433222  12345677788


Q ss_pred             cccceEEcCCCCCCCHhHHHhccccCccCCCceEE
Q 046301          358 LQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSL  392 (404)
Q Consensus       358 L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l  392 (404)
                      |+ .|.+.++...   .+..+..+..+++|+.|.+
T Consensus       239 L~-~L~l~~N~l~---c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          239 LE-HFDLRGNGFH---CGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             CC-EEECTTCCBC---HHHHHHHHTTCHHHHHHHH
T ss_pred             CC-EEEcCCCCCc---CcchHHHHHhCCCCcEEec
Confidence            88 8888775431   1345555666666666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.02  E-value=2.5e-10  Score=113.62  Aligned_cols=100  Identities=22%  Similarity=0.197  Sum_probs=83.5

Q ss_pred             CccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccc
Q 046301          226 YLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGN  305 (404)
Q Consensus       226 ~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~  305 (404)
                      .|+.|.+.++.       ...+ +. +..+++|++|++++|.+..+|..++.|++|++|+|++|.++.+| .     +++
T Consensus       442 ~L~~L~Ls~n~-------l~~l-p~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~-----l~~  506 (567)
T 1dce_A          442 DVRVLHLAHKD-------LTVL-CH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G-----VAN  506 (567)
T ss_dssp             TCSEEECTTSC-------CSSC-CC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G-----GTT
T ss_pred             CceEEEecCCC-------CCCC-cC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c-----cCC
Confidence            35566665554       2223 33 88999999999999999999999999999999999999999776 3     999


Q ss_pred             cccCceeecCCCCccccc--cccccccccccccCceEe
Q 046301          306 LVNLRHLKDSHSNLLEEM--PLRIGKLTSLRTLAKFVV  341 (404)
Q Consensus       306 l~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~L~~~~~  341 (404)
                      +++|++|++++| .+..+  |..++.+++|++|++..+
T Consensus       507 l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          507 LPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             CSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC
Confidence            999999999999 67777  888999999999966533

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.99  E-value=1.4e-09  Score=92.71  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=86.4

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+..+.       ...+ +..|.++++|++|++++|.++.+++ .+..+++|++|++++|.++.++..    .+
T Consensus        31 ~~l~~L~L~~n~-------i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f   98 (193)
T 2wfh_A           31 RDVTELYLDGNQ-------FTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR----TF   98 (193)
T ss_dssp             TTCCEEECCSSC-------CCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT----TT
T ss_pred             CCCCEEECCCCc-------Cchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH----Hh
Confidence            588999988765       2223 3578999999999999999998764 589999999999999999987743    58


Q ss_pred             cccccCceeecCCCCcccccccc-ccccccccccCceE
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFV  340 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~  340 (404)
                      ..+++|++|++++| .+..+|.. +..+++|+.|++..
T Consensus        99 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           99 DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence            99999999999999 78888875 88899999996543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.98  E-value=1.4e-09  Score=108.05  Aligned_cols=155  Identities=14%  Similarity=0.080  Sum_probs=86.5

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELK  279 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~  279 (404)
                      ..++.|.+..+.+..+   +  ..+++|+.|.+.++.       ...++.  +.+  +|++|++++|.+..+|.   .++
T Consensus        80 ~~L~~L~Ls~N~l~~i---p--~~l~~L~~L~Ls~N~-------l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~  140 (571)
T 3cvr_A           80 PQITVLEITQNALISL---P--ELPASLEYLDACDNR-------LSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPA  140 (571)
T ss_dssp             TTCSEEECCSSCCSCC---C--CCCTTCCEEECCSSC-------CSCCCC--CCT--TCCEEECCSSCCSCCCC---CCT
T ss_pred             CCCCEEECcCCCCccc---c--cccCCCCEEEccCCC-------CCCcch--hhc--CCCEEECCCCcCCCCCC---cCc
Confidence            4566777766665432   2  345777777776654       111222  333  67777777777777666   567


Q ss_pred             CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccc-
Q 046301          280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL-  358 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L-  358 (404)
                      +|++|++++|.++.+|.        .+++|++|++++| .+..+|. ++  ++|+.|++..+..   ..++.++.  +| 
T Consensus       141 ~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N~L---~~lp~~~~--~L~  203 (571)
T 3cvr_A          141 LLEYINADNNQLTMLPE--------LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTNLL---ESLPAVPV--RNH  203 (571)
T ss_dssp             TCCEEECCSSCCSCCCC--------CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSSCC---SSCCCCC------
T ss_pred             cccEEeCCCCccCcCCC--------cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCCCC---CchhhHHH--hhh
Confidence            77777777777765542        3466777777776 5666666 54  5666664432221   12222322  34 


Q ss_pred             ------ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          359 ------QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       359 ------~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                            + .|.+.++.- ..    +|..+..+++|+.|+|+.|.
T Consensus       204 ~~~~~L~-~L~Ls~N~l-~~----lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          204 HSEETEI-FFRCRENRI-TH----IPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             ----CCE-EEECCSSCC-CC----CCGGGGGSCTTEEEECCSSS
T ss_pred             cccccce-EEecCCCcc-ee----cCHHHhcCCCCCEEEeeCCc
Confidence                  5 566655322 22    33345556667777776654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.96  E-value=9.1e-11  Score=111.47  Aligned_cols=190  Identities=13%  Similarity=0.058  Sum_probs=114.9

Q ss_pred             CCcceEEEEeccCccccc--c-------ccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc
Q 046301          200 RNLRHLSYLTSQFDGIKR--F-------EGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ  270 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~--~-------~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  270 (404)
                      ..++.+.+..+....+..  +       ..+..+++|+.|.+..+.-.   .......+..+..+++|++|++++|.+..
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  136 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---PTAQEPLIDFLSKHTPLEHLYLHNNGLGP  136 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC---TTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC---HHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence            456777766543332210  1       12356788888888766510   00111345567788888888888888752


Q ss_pred             -----cCcccccC---------CCcceEecCCCCcc--cCCCCCCCccccccccCceeecCCCCccc------ccccccc
Q 046301          271 -----LPNDIAEL---------KHLRYLDFSHTAIE--VLPESKLFPDVGNLVNLRHLKDSHSNLLE------EMPLRIG  328 (404)
Q Consensus       271 -----lp~~~~~L---------~~L~~L~l~~~~l~--~lp~~~~p~~~~~l~~L~~L~l~~~~~l~------~lp~~~~  328 (404)
                           ++..+..+         ++|++|++++|++.  .+|  .+...+..+++|++|++++| .+.      -.|..+.
T Consensus       137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~  213 (386)
T 2ca6_A          137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK--EWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLA  213 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--HHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGG
T ss_pred             HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--HHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhh
Confidence                 33344444         78888888888775  222  11134667888999999888 454      3444677


Q ss_pred             ccccccccCceEeccCC---cCCccccccccccccceEEcCCCCCCCHhHHHhccc--cCccCCCceEEEecC
Q 046301          329 KLTSLRTLAKFVVGKGN---CYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL--NGKEKLEALSLKWVN  396 (404)
Q Consensus       329 ~l~~L~~L~~~~~~~~~---~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~  396 (404)
                      ++++|++|++..+....   ...+..+..+++|+ .|.++++.-.......++..+  ..+++|+.|+|++|.
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR-ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC-EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC-EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            88888888654332210   11234467778888 888887653221123345555  348889999998775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.96  E-value=1.2e-09  Score=93.01  Aligned_cols=106  Identities=18%  Similarity=0.156  Sum_probs=85.5

Q ss_pred             CCccEEEecccCccccccccchhhh-hhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCcc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVF-HVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPD  302 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~  302 (404)
                      ..++.|.+..+.       ...+++ ..|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.++..    .
T Consensus        29 ~~l~~L~l~~n~-------i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~   97 (192)
T 1w8a_A           29 LHTTELLLNDNE-------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK----M   97 (192)
T ss_dssp             TTCSEEECCSCC-------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS----S
T ss_pred             CCCCEEECCCCc-------CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH----H
Confidence            388999888765       223333 2488999999999999999976 77899999999999999999977643    5


Q ss_pred             ccccccCceeecCCCCccccccccccccccccccCceEe
Q 046301          303 VGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVV  341 (404)
Q Consensus       303 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~  341 (404)
                      +.++++|++|++++|......|..++.+++|++|++..+
T Consensus        98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            889999999999999433444777999999999965433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.95  E-value=1.3e-09  Score=91.49  Aligned_cols=103  Identities=23%  Similarity=0.286  Sum_probs=75.3

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+.++.       ...+++..|..+++|++|++++|.+..+|+. +..+++|++|++++|.++.+|..    .+
T Consensus        28 ~~l~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~   96 (177)
T 2o6r_A           28 SSATRLELESNK-------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG----VF   96 (177)
T ss_dssp             TTCSEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TT
T ss_pred             CCCcEEEeCCCc-------ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH----Hh
Confidence            577777776654       2344455677788888888888888877655 57788888888888888866643    46


Q ss_pred             cccccCceeecCCCCcccccccc-ccccccccccCce
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKF  339 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~  339 (404)
                      ..+++|++|++++| .+..+|.. +..+++|++|++.
T Consensus        97 ~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           97 DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred             hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEec
Confidence            77888888888888 67777765 4677888887554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.94  E-value=2.1e-09  Score=90.22  Aligned_cols=111  Identities=23%  Similarity=0.223  Sum_probs=83.4

Q ss_pred             ccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccc
Q 046301          256 RQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL  333 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L  333 (404)
                      ++|+.|++++|.+..+|+. ++.+++|++|++++|.+..+|..    .+..+++|++|++++| .+..+|.. ++++++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG----VFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh----HccCCCccCEEECCCC-CccccCHHHhhCCccc
Confidence            6889999999999887764 58899999999999999877643    4688999999999998 67777765 6888999


Q ss_pred             cccCceEeccCCcCCccccccccccccceEEcCCCCCCCH
Q 046301          334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDA  373 (404)
Q Consensus       334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~  373 (404)
                      ++|++..+... ......+..+++|+ .|.+.++.-....
T Consensus       103 ~~L~l~~N~l~-~~~~~~~~~l~~L~-~L~l~~N~~~~~~  140 (177)
T 2o6r_A          103 KELALDTNQLK-SVPDGIFDRLTSLQ-KIWLHTNPWDCSC  140 (177)
T ss_dssp             CEEECCSSCCS-CCCTTTTTTCTTCC-EEECCSSCBCCCH
T ss_pred             CEEECcCCcce-EeCHHHhcCCcccC-EEEecCCCeeccC
Confidence            99966543322 11122357788888 8888876544333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.93  E-value=4.2e-09  Score=105.77  Aligned_cols=75  Identities=16%  Similarity=0.015  Sum_probs=46.3

Q ss_pred             ccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccC
Q 046301          307 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEK  386 (404)
Q Consensus       307 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~  386 (404)
                      ++|++|++++| .+..+|   ..+++|+.|++..+   ....++.  .+++|+ .|.+.++.- .    .+|..+.++++
T Consensus       221 ~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N---~L~~lp~--~~~~L~-~L~Ls~N~L-~----~lp~~l~~l~~  285 (622)
T 3g06_A          221 SGLKELIVSGN-RLTSLP---VLPSELKELMVSGN---RLTSLPM--LPSGLL-SLSVYRNQL-T----RLPESLIHLSS  285 (622)
T ss_dssp             TTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS---CCSCCCC--CCTTCC-EEECCSSCC-C----SCCGGGGGSCT
T ss_pred             CCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC---CCCcCCc--ccccCc-EEeCCCCCC-C----cCCHHHhhccc
Confidence            56777777766 566666   33456666644322   2222222  456677 788877532 2    33556888899


Q ss_pred             CCceEEEecC
Q 046301          387 LEALSLKWVN  396 (404)
Q Consensus       387 L~~L~l~~~~  396 (404)
                      |+.|+|+.|.
T Consensus       286 L~~L~L~~N~  295 (622)
T 3g06_A          286 ETTVNLEGNP  295 (622)
T ss_dssp             TCEEECCSCC
T ss_pred             cCEEEecCCC
Confidence            9999998775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.93  E-value=2.2e-10  Score=108.80  Aligned_cols=194  Identities=13%  Similarity=0.065  Sum_probs=122.3

Q ss_pred             CCcceEEEEeccCcccc---ccccccCCCCccEEEecccCccccccccchhhhhhhccC---------ccccEEEecCCC
Q 046301          200 RNLRHLSYLTSQFDGIK---RFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRL---------RQLRVVSLCGYK  267 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~---~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~~~~  267 (404)
                      ..++.|.+..+.+....   ....+.++++|+.|.+..+.-   ...........+..+         ++|++|++++|.
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l---~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL---GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC---HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC---CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            45677777776654421   123456788999998887651   000011223334444         899999999998


Q ss_pred             cc--ccC---cccccCCCcceEecCCCCcccCCCC-CCCccccccccCceeecCCCCcc-----cccccccccccccccc
Q 046301          268 IV--QLP---NDIAELKHLRYLDFSHTAIEVLPES-KLFPDVGNLVNLRHLKDSHSNLL-----EEMPLRIGKLTSLRTL  336 (404)
Q Consensus       268 ~~--~lp---~~~~~L~~L~~L~l~~~~l~~lp~~-~~p~~~~~l~~L~~L~l~~~~~l-----~~lp~~~~~l~~L~~L  336 (404)
                      +.  .+|   ..+..+++|++|++++|.+...--. ..|..+..+++|++|++++|. +     ..+|..+..+++|++|
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEE
Confidence            86  444   5677888999999999988721000 011248889999999999984 5     6678888888999998


Q ss_pred             CceEeccCCc--C-Ccccc--ccccccccceEEcCCCCCCCHhHHHhccc-cCccCCCceEEEecCCC
Q 046301          337 AKFVVGKGNC--Y-GLKEL--RSLMHLQEKLTISGLENVNDAEDAKEAQL-NGKEKLEALSLKWVNST  398 (404)
Q Consensus       337 ~~~~~~~~~~--~-~~~~l--~~L~~L~~~L~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~  398 (404)
                      ++..+.....  . .+..+  ..+++|+ .|.++++.-...-...++..+ .++++|+.|++++|.-.
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~-~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQ-TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCC-EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeE-EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            6543322110  0 11234  3378888 888887543211111355555 56789999999877643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.91  E-value=7.1e-09  Score=100.52  Aligned_cols=120  Identities=19%  Similarity=0.197  Sum_probs=63.7

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLT  331 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~  331 (404)
                      +.++++|++|++++|.+..+|..+   .+|++|++++|.+..+|      .++++++|++|++++| .+..+|...   +
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~------~~~~l~~L~~L~l~~N-~l~~l~~~~---~  215 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP------ELQNLPFLTAIYADNN-SLKKLPDLP---L  215 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC------CCTTCTTCCEEECCSS-CCSSCCCCC---T
T ss_pred             cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc------cccCCCCCCEEECCCC-cCCcCCCCc---C
Confidence            555555555555555555555432   35555555555555443      2666666677766666 455555432   3


Q ss_pred             cccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          332 SLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       332 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +|++|++..+   ....++.+..+++|+ .|.+.++.- ..++    .   ...+|+.|+++.|.
T Consensus       216 ~L~~L~l~~n---~l~~lp~~~~l~~L~-~L~l~~N~l-~~l~----~---~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          216 SLESIVAGNN---ILEELPELQNLPFLT-TIYADNNLL-KTLP----D---LPPSLEALNVRDNY  268 (454)
T ss_dssp             TCCEEECCSS---CCSSCCCCTTCTTCC-EEECCSSCC-SSCC----S---CCTTCCEEECCSSC
T ss_pred             cccEEECcCC---cCCcccccCCCCCCC-EEECCCCcC-Cccc----c---cccccCEEECCCCc
Confidence            5566643322   222334566777777 777766432 2211    1   12456666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.89  E-value=1e-08  Score=102.99  Aligned_cols=66  Identities=23%  Similarity=0.269  Sum_probs=34.2

Q ss_pred             CccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCcccccc--------------ccCceeecCCCCcc
Q 046301          255 LRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNL--------------VNLRHLKDSHSNLL  320 (404)
Q Consensus       255 l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l--------------~~L~~L~l~~~~~l  320 (404)
                      +++|+.|++++|.+..+|..   +++|++|++++|.+..+|..  |..+..|              ++|++|++++| .+
T Consensus       120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l  193 (622)
T 3g06_A          120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QL  193 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CC
T ss_pred             CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc--cCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CC
Confidence            34455555555555555543   25556666666655555431  2223333              66666666666 45


Q ss_pred             cccccc
Q 046301          321 EEMPLR  326 (404)
Q Consensus       321 ~~lp~~  326 (404)
                      ..+|..
T Consensus       194 ~~l~~~  199 (622)
T 3g06_A          194 ASLPTL  199 (622)
T ss_dssp             SCCCCC
T ss_pred             CCCCCc
Confidence            555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.86  E-value=9.5e-09  Score=99.63  Aligned_cols=159  Identities=17%  Similarity=0.177  Sum_probs=107.1

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL  278 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L  278 (404)
                      +..++.+.+..+.+..   ++.+.++++|+.|.+..+.-       ..++ .   ...+|++|++++|.+..+| .++.+
T Consensus       130 ~~~L~~L~L~~n~l~~---lp~~~~l~~L~~L~l~~N~l-------~~lp-~---~~~~L~~L~L~~n~l~~l~-~~~~l  194 (454)
T 1jl5_A          130 PPLLEYLGVSNNQLEK---LPELQNSSFLKIIDVDNNSL-------KKLP-D---LPPSLEFIAAGNNQLEELP-ELQNL  194 (454)
T ss_dssp             CTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCC-------SCCC-C---CCTTCCEEECCSSCCSSCC-CCTTC
T ss_pred             CCCCCEEECcCCCCCC---CcccCCCCCCCEEECCCCcC-------cccC-C---CcccccEEECcCCcCCcCc-cccCC
Confidence            3567777777776654   33577888888888877651       1111 1   2348999999999998887 68899


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL  358 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L  358 (404)
                      ++|++|++++|.+..+|..     .   ++|++|++++| .+..+|. ++.+++|++|++..+..   ..++.  .+++|
T Consensus       195 ~~L~~L~l~~N~l~~l~~~-----~---~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~l---~~l~~--~~~~L  259 (454)
T 1jl5_A          195 PFLTAIYADNNSLKKLPDL-----P---LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLL---KTLPD--LPPSL  259 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCC-----C---TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCC---SSCCS--CCTTC
T ss_pred             CCCCEEECCCCcCCcCCCC-----c---CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCcC---Ccccc--ccccc
Confidence            9999999999988877642     2   48899999988 6778884 88888999886543222   12222  23567


Q ss_pred             ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          359 QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       359 ~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      + .|.+.++.- ..+    +..   .++|+.|++++|.
T Consensus       260 ~-~L~l~~N~l-~~l----~~~---~~~L~~L~ls~N~  288 (454)
T 1jl5_A          260 E-ALNVRDNYL-TDL----PEL---PQSLTFLDVSENI  288 (454)
T ss_dssp             C-EEECCSSCC-SCC----CCC---CTTCCEEECCSSC
T ss_pred             C-EEECCCCcc-ccc----Ccc---cCcCCEEECcCCc
Confidence            7 777776542 222    221   2567777776664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.85  E-value=5.6e-10  Score=105.11  Aligned_cols=190  Identities=10%  Similarity=0.068  Sum_probs=94.3

Q ss_pred             CcceEEEEeccCccccccccccCC-----CCccEEEecccCccccccccchhhhhhhccC-ccccEEEecCCCccccCc-
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKV-----EYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-RQLRVVSLCGYKIVQLPN-  273 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~-----~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~lp~-  273 (404)
                      .++.+.+..+.+.... ...+..+     +.|+.|.+..+.-.   ..........+..+ ++|++|++++|.+...+. 
T Consensus        52 ~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  127 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKN-SDELVQILAAIPANVTSLNLSGNFLS---YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS  127 (362)
T ss_dssp             TCCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGG---GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             ceeEEECcCCCCCHHH-HHHHHHHHhccCCCccEEECcCCcCC---hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH
Confidence            4556666555443321 1112221     66666666555400   00111122233344 667777777777664432 


Q ss_pred             c----cccC-CCcceEecCCCCcccCCCCCCCccccccc-cCceeecCCCCcccccc-ccc----ccc-ccccccCceEe
Q 046301          274 D----IAEL-KHLRYLDFSHTAIEVLPESKLFPDVGNLV-NLRHLKDSHSNLLEEMP-LRI----GKL-TSLRTLAKFVV  341 (404)
Q Consensus       274 ~----~~~L-~~L~~L~l~~~~l~~lp~~~~p~~~~~l~-~L~~L~l~~~~~l~~lp-~~~----~~l-~~L~~L~~~~~  341 (404)
                      .    +..+ .+|++|++++|.+.......++..+..++ +|++|++++| .+...+ ..+    ..+ ++|++|++..+
T Consensus       128 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          128 EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence            2    2222 46777777777666322222223344554 7777777777 444332 222    333 47777754332


Q ss_pred             ccCC--cC-Cccccccc-cccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          342 GKGN--CY-GLKELRSL-MHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       342 ~~~~--~~-~~~~l~~L-~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      ....  .. ....+..+ ++|+ .|+++++.-...-...+...+..+++|+.|++++|.
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVV-SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCC-EEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCChhHHHHHHHHHhcCCCCce-EEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            2111  00 11123332 4677 788777643332334445556777888888887775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.85  E-value=1.6e-10  Score=99.14  Aligned_cols=125  Identities=23%  Similarity=0.241  Sum_probs=98.3

Q ss_pred             ccEEEecCC--CccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccc
Q 046301          258 LRVVSLCGY--KIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  335 (404)
Q Consensus       258 L~~L~l~~~--~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~  335 (404)
                      |+...+.+.  .++.+|..++.+++|++|++++|.+..+| .     +.++++|++|++++| .+..+|..+..+++|++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~-----~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~   97 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S-----LSGMENLRILSLGRN-LIKKIENLDAVADTLEE   97 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-C-----HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-c-----cccCCCCCEEECCCC-CcccccchhhcCCcCCE
Confidence            455555544  45566779999999999999999999776 4     999999999999999 78899988888899999


Q ss_pred             cCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          336 LAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       336 L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      |++..+...   .++.+..+++|+ .|.+.++.- ...+..  ..+..+++|+.|+++.|.
T Consensus        98 L~L~~N~l~---~l~~~~~l~~L~-~L~l~~N~i-~~~~~~--~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A           98 LWISYNQIA---SLSGIEKLVNLR-VLYMSNNKI-TNWGEI--DKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEEEEEECC---CHHHHHHHHHSS-EEEESEEEC-CCHHHH--HHHTTTTTCSEEEECSCH
T ss_pred             EECcCCcCC---cCCccccCCCCC-EEECCCCcC-CchhHH--HHHhcCCCCCEEEecCCc
Confidence            977766443   355788899999 999987643 333321  357889999999998774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.83  E-value=4.5e-09  Score=87.67  Aligned_cols=79  Identities=25%  Similarity=0.391  Sum_probs=55.2

Q ss_pred             ccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccc
Q 046301          256 RQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL  333 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L  333 (404)
                      +.|++|++++|.+..+ |..+..+++|++|+|++|+|+.+|..    .+..+++|++|++++| .+..+|.. +.++++|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG----VFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh----hccCCCCCCEEECCCC-ccCEeCHHHhcCCCCC
Confidence            5677777777777766 44577777777777777777766643    3567777777777777 56666654 6777777


Q ss_pred             cccCce
Q 046301          334 RTLAKF  339 (404)
Q Consensus       334 ~~L~~~  339 (404)
                      ++|++.
T Consensus       105 ~~L~L~  110 (170)
T 3g39_A          105 THIWLL  110 (170)
T ss_dssp             CEEECC
T ss_pred             CEEEeC
Confidence            777554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.82  E-value=1.2e-08  Score=85.05  Aligned_cols=104  Identities=18%  Similarity=0.149  Sum_probs=83.0

Q ss_pred             cccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccc
Q 046301          257 QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRT  335 (404)
Q Consensus       257 ~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~  335 (404)
                      ..+.++++++.++.+|..+.  .+|++|++++|.|+.++.    ..+..+++|++|++++| .+..+|.. +.++++|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEP----GVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccCh----hhhcCcccCCEEECCCC-CcCccChhhccCCCCCCE
Confidence            35789999999999998875  899999999999998753    35899999999999999 78888876 689999999


Q ss_pred             cCceEeccCCcCCccccccccccccceEEcCCCC
Q 046301          336 LAKFVVGKGNCYGLKELRSLMHLQEKLTISGLEN  369 (404)
Q Consensus       336 L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~  369 (404)
                      |++..+... ......+..+++|+ .|.+.++.-
T Consensus        83 L~L~~N~l~-~~~~~~~~~l~~L~-~L~L~~N~~  114 (170)
T 3g39_A           83 LSLNDNQLK-SIPRGAFDNLKSLT-HIWLLNNPW  114 (170)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCC-EEECCSSCB
T ss_pred             EECCCCccC-EeCHHHhcCCCCCC-EEEeCCCCC
Confidence            966544322 11223478888999 899987643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.82  E-value=1.3e-08  Score=85.22  Aligned_cols=81  Identities=21%  Similarity=0.317  Sum_probs=67.5

Q ss_pred             ccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccc
Q 046301          256 RQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL  333 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L  333 (404)
                      +.|++|++++|.+..+ |..+..+++|++|+|++|+|+.+|..    .+.++++|++|++++| .+..+|.. +..+++|
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh----HhCCcchhhEEECCCC-ccceeCHHHhccccCC
Confidence            7889999999999877 56788999999999999999987754    3578999999999998 78888876 8889999


Q ss_pred             cccCceEe
Q 046301          334 RTLAKFVV  341 (404)
Q Consensus       334 ~~L~~~~~  341 (404)
                      ++|++..+
T Consensus       108 ~~L~L~~N  115 (174)
T 2r9u_A          108 THIYLYNN  115 (174)
T ss_dssp             SEEECCSS
T ss_pred             CEEEeCCC
Confidence            99865433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.80  E-value=6.6e-09  Score=86.99  Aligned_cols=95  Identities=18%  Similarity=0.178  Sum_probs=78.7

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.|+.|.+..+.       ...+++..|.++++|++|++++|.+..+|+. +..+++|++|+|++|.|+.+|..    .+
T Consensus        33 ~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~----~~  101 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-------ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG----AF  101 (174)
T ss_dssp             TTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TT
T ss_pred             CCCcEEEeCCCC-------ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH----Hh
Confidence            788999888776       4455667799999999999999999999887 48999999999999999987753    48


Q ss_pred             cccccCceeecCCCCccccccccccccc
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPLRIGKLT  331 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~~~~~l~  331 (404)
                      ..+++|++|++++| .+...|..+..+.
T Consensus       102 ~~l~~L~~L~L~~N-~~~c~~~~~~~l~  128 (174)
T 2r9u_A          102 DNLKSLTHIYLYNN-PWDCECRDIMYLR  128 (174)
T ss_dssp             TTCTTCSEEECCSS-CBCTTBGGGHHHH
T ss_pred             ccccCCCEEEeCCC-CcccccccHHHHH
Confidence            89999999999999 6666665444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.73  E-value=8.6e-10  Score=107.12  Aligned_cols=14  Identities=14%  Similarity=0.062  Sum_probs=8.5

Q ss_pred             CccCCCceEEEecC
Q 046301          383 GKEKLEALSLKWVN  396 (404)
Q Consensus       383 ~l~~L~~L~l~~~~  396 (404)
                      .+++|+.|+++.|.
T Consensus       254 ~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          254 PSSRLRTLWIWECG  267 (461)
T ss_dssp             TTCCCCEEECTTSC
T ss_pred             CCCCceEEECcCCC
Confidence            45666666666553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.73  E-value=3.1e-09  Score=106.58  Aligned_cols=136  Identities=13%  Similarity=0.032  Sum_probs=64.7

Q ss_pred             ccCccccEEEecCCCccc-----cCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc
Q 046301          253 PRLRQLRVVSLCGYKIVQ-----LPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI  327 (404)
Q Consensus       253 ~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~  327 (404)
                      .++++|++|++++|.+..     ++..+..+++|++|++++|.+..+....++..+.++++|++|++++| .+..+|..+
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~  239 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFF  239 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHH
Confidence            345555555555554431     22223344555555555555442222222233444555555555554 344444444


Q ss_pred             cccccccccCce------------------------EeccCC-cCCccccccccccccceEEcCCCCCCCHhHHHhcccc
Q 046301          328 GKLTSLRTLAKF------------------------VVGKGN-CYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  382 (404)
Q Consensus       328 ~~l~~L~~L~~~------------------------~~~~~~-~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~  382 (404)
                      .++++|+.|.+.                        ...... ......+..+++|+ .|.++++. +.  .......+.
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~-~L~Ls~~~-l~--~~~~~~~~~  315 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR-KLDLLYAL-LE--TEDHCTLIQ  315 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC-EEEETTCC-CC--HHHHHHHHT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc-EEecCCCc-CC--HHHHHHHHH
Confidence            444444444322                        111111 11222345667777 78887765 22  122333466


Q ss_pred             CccCCCceEEE
Q 046301          383 GKEKLEALSLK  393 (404)
Q Consensus       383 ~l~~L~~L~l~  393 (404)
                      .+++|+.|+++
T Consensus       316 ~~~~L~~L~L~  326 (592)
T 3ogk_B          316 KCPNLEVLETR  326 (592)
T ss_dssp             TCTTCCEEEEE
T ss_pred             hCcCCCEEecc
Confidence            77888888886

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.72  E-value=1.8e-08  Score=100.02  Aligned_cols=148  Identities=16%  Similarity=0.085  Sum_probs=96.6

Q ss_pred             CCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccC
Q 046301          199 SRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAEL  278 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L  278 (404)
                      ..+++.|.+..+.+..+..   +.+  +|+.|.+..+.       ...++.    .+++|++|++++|.++.+|.   .+
T Consensus        99 l~~L~~L~Ls~N~l~~ip~---l~~--~L~~L~Ls~N~-------l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l  159 (571)
T 3cvr_A           99 PASLEYLDACDNRLSTLPE---LPA--SLKHLDVDNNQ-------LTMLPE----LPALLEYINADNNQLTMLPE---LP  159 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCC---CCT--TCCEEECCSSC-------CSCCCC----CCTTCCEEECCSSCCSCCCC---CC
T ss_pred             cCCCCEEEccCCCCCCcch---hhc--CCCEEECCCCc-------CCCCCC----cCccccEEeCCCCccCcCCC---cC
Confidence            4567778887776655332   332  88888887765       112222    56788999999988888887   56


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccc-------cccCceEeccCCcCCccc
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL-------RTLAKFVVGKGNCYGLKE  351 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L-------~~L~~~~~~~~~~~~~~~  351 (404)
                      ++|++|++++|.++.+|.      +.  ++|++|++++| .+..+|. +..  +|       +.|++.++...  ..+..
T Consensus       160 ~~L~~L~Ls~N~L~~lp~------l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~--~lp~~  225 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTFLPE------LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRIT--HIPEN  225 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC------CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSCCC--CCCGG
T ss_pred             CCcCEEECCCCCCCCcch------hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcce--ecCHH
Confidence            788899999988887663      33  78888888888 6778887 654  66       77755433222  23344


Q ss_pred             cccccccccceEEcCCCCCCCHhHHHhccccCc
Q 046301          352 LRSLMHLQEKLTISGLENVNDAEDAKEAQLNGK  384 (404)
Q Consensus       352 l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l  384 (404)
                      +.++++|+ .|.+.++.    +.+..+..+..+
T Consensus       226 l~~l~~L~-~L~L~~N~----l~~~~p~~l~~l  253 (571)
T 3cvr_A          226 ILSLDPTC-TIILEDNP----LSSRIRESLSQQ  253 (571)
T ss_dssp             GGGSCTTE-EEECCSSS----CCHHHHHHHHHH
T ss_pred             HhcCCCCC-EEEeeCCc----CCCcCHHHHHHh
Confidence            66788888 88887654    334444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.69  E-value=5e-09  Score=98.56  Aligned_cols=191  Identities=13%  Similarity=0.071  Sum_probs=123.6

Q ss_pred             CCcceEEEEeccCccccc--c-ccccCC-CCccEEEecccCccccccccchhhhhhhccC-ccccEEEecCCCcc-----
Q 046301          200 RNLRHLSYLTSQFDGIKR--F-EGLHKV-EYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-RQLRVVSLCGYKIV-----  269 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~--~-~~~~~~-~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~-----  269 (404)
                      ..++.+.+..+.+.....  + ..+..+ +.|+.|.+..+.-   ...........+..+ ++|++|++++|.+.     
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF---SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD  156 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG---GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC---CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence            678888888877654221  1 123444 7899999988761   111111222334453 69999999999987     


Q ss_pred             ccCcccccCC-CcceEecCCCCcccCCCCCCCcccccc-ccCceeecCCCCcccc-----cccccccc-ccccccCceEe
Q 046301          270 QLPNDIAELK-HLRYLDFSHTAIEVLPESKLFPDVGNL-VNLRHLKDSHSNLLEE-----MPLRIGKL-TSLRTLAKFVV  341 (404)
Q Consensus       270 ~lp~~~~~L~-~L~~L~l~~~~l~~lp~~~~p~~~~~l-~~L~~L~l~~~~~l~~-----lp~~~~~l-~~L~~L~~~~~  341 (404)
                      .++..+..++ +|++|++++|.+.......+...+..+ ++|++|++++| .+..     +|..+..+ ++|++|++..+
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence            4455666666 899999999998865432222234445 59999999999 5665     66666664 48999966544


Q ss_pred             ccCCcCCc----cccccccccccceEEcCCC--CCC-CHhHHHhccccCccCCCceEEEecC
Q 046301          342 GKGNCYGL----KELRSLMHLQEKLTISGLE--NVN-DAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       342 ~~~~~~~~----~~l~~L~~L~~~L~l~~~~--~~~-~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      .... ..+    ..+..+++|+ .|.+.++.  .+. .....++..+..+++|+.|++++|.
T Consensus       236 ~l~~-~~~~~l~~~~~~l~~L~-~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          236 CLHG-PSLENLKLLKDSLKHLQ-TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CCCC-CCHHHHHHTTTTTTTCS-EEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             CCCc-HHHHHHHHHHhcCCCcc-EEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            3221 111    2246778888 89998764  111 1234566678888999999998776

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.68  E-value=8.7e-08  Score=89.58  Aligned_cols=148  Identities=16%  Similarity=0.083  Sum_probs=97.7

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccC-ccccEEEecCCCccccCcccccC
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRL-RQLRVVSLCGYKIVQLPNDIAEL  278 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~lp~~~~~L  278 (404)
                      ..++.+.+..+.+...... .......+..+.+....      ....+....|..+ ..+++|++++|.++.+|......
T Consensus       104 ~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~~~------~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~  176 (350)
T 4ay9_X          104 PNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQDNI------NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG  176 (350)
T ss_dssp             TTCCEEEEEEECCSSCCCC-TTCCBSSCEEEEEESCT------TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT
T ss_pred             cccccccccccccccCCch-hhcccchhhhhhhcccc------ccccccccchhhcchhhhhhccccccccCCChhhccc
Confidence            3456666666655443221 11223334444443322      1222334445555 46899999999999999988888


Q ss_pred             CCcceEecCC-CCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccccc
Q 046301          279 KHLRYLDFSH-TAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLM  356 (404)
Q Consensus       279 ~~L~~L~l~~-~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~  356 (404)
                      .+|+.|++++ |.++.+|..    .+..+++|++|++++| .+..+|.. +.+|++|+.+..     .....++.+.+|+
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~----~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~-----~~l~~lP~l~~l~  246 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPND----VFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST-----YNLKKLPTLEKLV  246 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTT----TTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTC-----TTCCCCCCTTTCC
T ss_pred             cchhHHhhccCCcccCCCHH----HhccCcccchhhcCCC-CcCccChhhhccchHhhhccC-----CCcCcCCCchhCc
Confidence            8999999986 579888764    4789999999999999 79999875 777777777732     1223344566777


Q ss_pred             ccccceEEc
Q 046301          357 HLQEKLTIS  365 (404)
Q Consensus       357 ~L~~~L~l~  365 (404)
                      +|+ .+.+.
T Consensus       247 ~L~-~l~l~  254 (350)
T 4ay9_X          247 ALM-EASLT  254 (350)
T ss_dssp             SCC-EEECS
T ss_pred             Chh-hCcCC
Confidence            777 66664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.65  E-value=1.6e-09  Score=105.24  Aligned_cols=193  Identities=14%  Similarity=0.048  Sum_probs=119.3

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-cCccc-cc
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-LPNDI-AE  277 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~-~~  277 (404)
                      ..++.+.+..+.+........+..+++|+.|.+..+.-   ........+..+..+++|++|++++|.+.. .+..+ ..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l---~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL---TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC---CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCC---CHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence            45677888777665543333367789999999987761   011112345667888999999999999864 23333 33


Q ss_pred             CC----CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccc-cccc-----cccccccccCceEeccCCc-
Q 046301          278 LK----HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEM-PLRI-----GKLTSLRTLAKFVVGKGNC-  346 (404)
Q Consensus       278 L~----~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~-----~~l~~L~~L~~~~~~~~~~-  346 (404)
                      +.    +|++|++++|.+....-..+|..+..+++|++|++++|. +... +..+     ...++|++|++..+..... 
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence            55    699999999998742111234458899999999999994 4322 2222     2355788886543322110 


Q ss_pred             --CCccccccccccccceEEcCCCCCCCHhHHHhcccc-CccCCCceEEEecCC
Q 046301          347 --YGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN-GKEKLEALSLKWVNS  397 (404)
Q Consensus       347 --~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~  397 (404)
                        .....+..+++|+ .|.+.++.-.......+...+. .+++|+.|++++|.-
T Consensus       159 ~~~l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  211 (461)
T 1z7x_W          159 CEPLASVLRAKPDFK-ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV  211 (461)
T ss_dssp             HHHHHHHHHHCTTCC-EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred             HHHHHHHHhhCCCCC-EEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence              0123355678899 8999875421111122222222 356899999988753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.59  E-value=2.3e-08  Score=100.23  Aligned_cols=130  Identities=16%  Similarity=0.102  Sum_probs=77.5

Q ss_pred             CcceEEEEeccCcccccccccc-CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-----cCcc
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLH-KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPND  274 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~  274 (404)
                      .++.+.+..+.+... .+..+. .+++|+.|.+..+.     ..........+.++++|++|++++|.+..     ++.-
T Consensus       106 ~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCE-----GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             TCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCE-----EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred             CCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcC-----CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence            566677766544331 122232 57888888887653     12222344555678888999988887653     2333


Q ss_pred             cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccC
Q 046301          275 IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA  337 (404)
Q Consensus       275 ~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~  337 (404)
                      ...+++|+.|++++|. ..+....++..+.++++|++|++++|..+..+|..+.++++|+.|.
T Consensus       180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred             hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence            3456788888888886 2222111222234568888888888755555665566666666663

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.59  E-value=3.6e-08  Score=91.99  Aligned_cols=85  Identities=19%  Similarity=0.128  Sum_probs=42.5

Q ss_pred             ccCCCCccEEEecc-cCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCC
Q 046301          221 LHKVEYLRTFLALL-LGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESK  298 (404)
Q Consensus       221 ~~~~~~L~~L~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~  298 (404)
                      +..+++|+.|.+.+ +.       ...+++..|.++++|++|+|++|.+..+|+ .+..|++|++|+|++|.|..+|.. 
T Consensus        27 l~~~~~L~~L~l~~~n~-------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-   98 (347)
T 2ifg_A           27 LPGAENLTELYIENQQH-------LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK-   98 (347)
T ss_dssp             SCSCSCCSEEECCSCSS-------CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST-
T ss_pred             CCCCCCeeEEEccCCCC-------CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH-
Confidence            44455555555543 32       233344445555555555555555554433 345555555555555555554432 


Q ss_pred             CCccccccccCceeecCCC
Q 046301          299 LFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       299 ~p~~~~~l~~L~~L~l~~~  317 (404)
                          +.....|+.|++.+|
T Consensus        99 ----~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           99 ----TVQGLSLQELVLSGN  113 (347)
T ss_dssp             ----TTCSCCCCEEECCSS
T ss_pred             ----HcccCCceEEEeeCC
Confidence                222222555555555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.42  E-value=1.1e-07  Score=95.11  Aligned_cols=166  Identities=15%  Similarity=0.060  Sum_probs=86.6

Q ss_pred             cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcc-c-------
Q 046301          222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIE-V-------  293 (404)
Q Consensus       222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~-~-------  293 (404)
                      ..++.|+.|.+..+.-.   ..........+.++++|++|++++|.+..+|..+..+++|+.|+++.+... .       
T Consensus       189 ~~~~~L~~L~L~~n~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFA---KISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHCCCCCEEECTTCCCS---SCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             hcCCCccEEEeeccCCC---ccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence            34566777766554410   011233444556677788888887777777777777777777777642111 0       


Q ss_pred             --------------CCCCCCCccccccccCceeecCCCCcccc--ccccccccccccccCceEeccCCcCCccc-ccccc
Q 046301          294 --------------LPESKLFPDVGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGKGNCYGLKE-LRSLM  356 (404)
Q Consensus       294 --------------lp~~~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~~~~~~~~~~~~~~~-l~~L~  356 (404)
                                    .....+|..+..+++|++|++++|. +..  ++..+..+++|++|.+.  .......+.. ...++
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~  342 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCK  342 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCT
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCC
Confidence                          0111234445566666677666663 221  11224556666666443  1101111122 23456


Q ss_pred             ccccceEEcC----------CCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          357 HLQEKLTISG----------LENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       357 ~L~~~L~l~~----------~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +|+ .|.+.+          +..+..  ..+......+++|+.|+++++.
T Consensus       343 ~L~-~L~L~~g~~~~~~~~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~  389 (592)
T 3ogk_B          343 QLK-RLRIERGADEQGMEDEEGLVSQ--RGLIALAQGCQELEYMAVYVSD  389 (592)
T ss_dssp             TCC-EEEEECCCCSSTTSSTTCCCCH--HHHHHHHHHCTTCSEEEEEESC
T ss_pred             CCC-EEEeecCccccccccccCccCH--HHHHHHHhhCccCeEEEeecCC
Confidence            677 777774          433321  2223334557788888885554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.37  E-value=3.8e-07  Score=84.95  Aligned_cols=85  Identities=19%  Similarity=0.198  Sum_probs=71.0

Q ss_pred             hccCccccEEEecC-CCccccC-cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccc
Q 046301          252 VPRLRQLRVVSLCG-YKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGK  329 (404)
Q Consensus       252 ~~~l~~L~~L~l~~-~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~  329 (404)
                      +..+.+|+.|+|++ |.+..+| ..++.|++|++|+|++|.|+.+|..    .|.+|++|++|+|++| .+..+|..+..
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~~~~~~~  101 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD----AFHFTPRLSRLNLSFN-ALESLSWKTVQ  101 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT----GGGSCSCCCEEECCSS-CCSCCCSTTTC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH----HhcCCcCCCEEeCCCC-ccceeCHHHcc
Confidence            88999999999996 9999887 5689999999999999999987643    5899999999999999 78888876433


Q ss_pred             cccccccCceEe
Q 046301          330 LTSLRTLAKFVV  341 (404)
Q Consensus       330 l~~L~~L~~~~~  341 (404)
                      ..+|+.|.+..+
T Consensus       102 ~~~L~~l~l~~N  113 (347)
T 2ifg_A          102 GLSLQELVLSGN  113 (347)
T ss_dssp             SCCCCEEECCSS
T ss_pred             cCCceEEEeeCC
Confidence            334888865433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.35  E-value=8.4e-09  Score=97.22  Aligned_cols=162  Identities=15%  Similarity=0.102  Sum_probs=92.2

Q ss_pred             CCCcceEEEEeccCcccc--ccc-ccc-CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc---
Q 046301          199 SRNLRHLSYLTSQFDGIK--RFE-GLH-KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL---  271 (404)
Q Consensus       199 ~~~~r~l~~~~~~~~~~~--~~~-~~~-~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---  271 (404)
                      ...++.+.+..+.+....  .+. .+. ..+.|+.|.+..+.      ............+++|+.|++++|.+...   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ------LDPAGLRTLLPVFLRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC------CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC------CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence            345667777666554321  111 111 23678888887765      22222333344566788888888887632   


Q ss_pred             --Cccc-ccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc-----cccccccccccccccCceEecc
Q 046301          272 --PNDI-AELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKFVVGK  343 (404)
Q Consensus       272 --p~~~-~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~~~~~~~  343 (404)
                        ...+ ...++|+.|+|++|.+.......++..+...++|++|++++| .+.     .++..+...++|++|++..+..
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence              1222 235678888888888764222223334567788888888888 343     2345566677788886544322


Q ss_pred             CC--c-CCccccccccccccceEEcCCC
Q 046301          344 GN--C-YGLKELRSLMHLQEKLTISGLE  368 (404)
Q Consensus       344 ~~--~-~~~~~l~~L~~L~~~L~l~~~~  368 (404)
                      ..  . .....+...++|+ .|+++++.
T Consensus       224 ~~~g~~~l~~~L~~~~~L~-~L~Ls~N~  250 (372)
T 3un9_A          224 GDTAALALARAAREHPSLE-LLHLYFNE  250 (372)
T ss_dssp             CHHHHHHHHHHHHHCSSCC-EEECTTSS
T ss_pred             CHHHHHHHHHHHHhCCCCC-EEeccCCC
Confidence            21  0 0112244556777 78887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=8.4e-07  Score=82.04  Aligned_cols=99  Identities=16%  Similarity=0.167  Sum_probs=67.0

Q ss_pred             CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-cccccccc-ccCceEeccCCcCC--ccccc
Q 046301          278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLR-TLAKFVVGKGNCYG--LKELR  353 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~-~L~~~~~~~~~~~~--~~~l~  353 (404)
                      +++|+.+++++|+++.+|..    .+.++.+|+.+++.++  +..++.. |.++++|+ .+.+.   . ....  ...|.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~---~-~l~~I~~~aF~  294 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELP---A-SVTAIEFGAFM  294 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEEC---T-TCCEECTTTTT
T ss_pred             cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEc---c-cceEEchhhhh
Confidence            67888888888888887765    6888888888888876  7777655 78888888 77332   2 1111  23466


Q ss_pred             cccccccceEEcCCCCCCCHhHHHhccccCccCCCceE
Q 046301          354 SLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALS  391 (404)
Q Consensus       354 ~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~  391 (404)
                      .+++|+ .+.+.+.    .+.......+.+|++|+.++
T Consensus       295 ~c~~L~-~l~l~~n----~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          295 GCDNLR-YVLATGD----KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCTTEE-EEEECSS----CCCEECTTTTCTTCCCCEEE
T ss_pred             CCccCC-EEEeCCC----ccCccchhhhcCCcchhhhc
Confidence            777777 7776432    22233345678888888875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.22  E-value=1.2e-07  Score=95.08  Aligned_cols=112  Identities=14%  Similarity=0.150  Sum_probs=74.8

Q ss_pred             cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCC-Cccc--cCcccccCCCcceEecCCCCcccCCCCC
Q 046301          222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGY-KIVQ--LPNDIAELKHLRYLDFSHTAIEVLPESK  298 (404)
Q Consensus       222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~--lp~~~~~L~~L~~L~l~~~~l~~lp~~~  298 (404)
                      ..+++|+.|.+..+.      .....+......+++|++|++++| .+..  ++.-+..+++|++|++++|.+.......
T Consensus       102 ~~~~~L~~L~L~~~~------~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~  175 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMV------VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW  175 (594)
T ss_dssp             HHCTTCCEEEEESCB------CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred             HhCCCCCeEEeeCcE------EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence            357899999988754      222223333336899999999999 4553  5665668999999999999876533222


Q ss_pred             CCccccccccCceeecCCCC-cc--ccccccccccccccccCce
Q 046301          299 LFPDVGNLVNLRHLKDSHSN-LL--EEMPLRIGKLTSLRTLAKF  339 (404)
Q Consensus       299 ~p~~~~~l~~L~~L~l~~~~-~l--~~lp~~~~~l~~L~~L~~~  339 (404)
                      ++.....+++|++|++++|. .+  ..++.-+.++++|++|++.
T Consensus       176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence            33335578899999999984 11  1122223456888888654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.08  E-value=9.7e-07  Score=82.55  Aligned_cols=168  Identities=13%  Similarity=0.094  Sum_probs=91.4

Q ss_pred             ccCCCCccEEEecccCccc--cccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCC
Q 046301          221 LHKVEYLRTFLALLLGTRK--TFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESK  298 (404)
Q Consensus       221 ~~~~~~L~~L~~~~~~~~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~  298 (404)
                      ..++++|+.|.+.......  ........+...+..+++|+.|+++++.-..+|+ +. +++|+.|++..|.+..-.   
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~---  209 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSV---  209 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHH---
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHH---
Confidence            3456788888775432100  0001111234556778889999998874234554 43 788888888877654210   


Q ss_pred             CCcccc--ccccCceeecCCCC-------ccccccccc--cccccccccCceEeccCC--cCCccccccccccccceEEc
Q 046301          299 LFPDVG--NLVNLRHLKDSHSN-------LLEEMPLRI--GKLTSLRTLAKFVVGKGN--CYGLKELRSLMHLQEKLTIS  365 (404)
Q Consensus       299 ~p~~~~--~l~~L~~L~l~~~~-------~l~~lp~~~--~~l~~L~~L~~~~~~~~~--~~~~~~l~~L~~L~~~L~l~  365 (404)
                       ...+.  .+|+|++|+|+.+.       .+..+...+  ..+++|++|.+..+....  +..+.+.+.+++|+ .|+++
T Consensus       210 -l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~-~LdLs  287 (362)
T 2ra8_A          210 -VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE-TMDIS  287 (362)
T ss_dssp             -HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS-EEECC
T ss_pred             -HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC-EEECC
Confidence             01132  67888888875321       111221122  246788888654332211  11222234577888 88886


Q ss_pred             CCCCCCC-HhHHHhccccCccCCCceEEEecC
Q 046301          366 GLENVND-AEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       366 ~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      .+. +.. -...+...+..+++|+.|+|+.|.
T Consensus       288 ~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          288 AGV-LTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             SSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence            532 221 123345555677888888887664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.86  E-value=1e-05  Score=71.90  Aligned_cols=81  Identities=14%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             ccCccccEEEecCCCcccc---CcccccCCCcceEecCCCCcccCCCCCCCccccccc--cCceeecCCCCccccccc--
Q 046301          253 PRLRQLRVVSLCGYKIVQL---PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLV--NLRHLKDSHSNLLEEMPL--  325 (404)
Q Consensus       253 ~~l~~L~~L~l~~~~~~~l---p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~--~L~~L~l~~~~~l~~lp~--  325 (404)
                      .+++.|+.|+|++|.+..+   |..+..+++|++|+|++|.|+.+.      .+..+.  +|++|++++|.....+|.  
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~------~l~~l~~l~L~~L~L~~Npl~~~~~~~~  240 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER------ELDKIKGLKLEELWLDGNSLCDTFRDQS  240 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG------GGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch------hhhhcccCCcceEEccCCcCccccCcch
Confidence            5688999999999998754   466778999999999999998763      255555  899999999965555552  


Q ss_pred             -----cccccccccccCce
Q 046301          326 -----RIGKLTSLRTLAKF  339 (404)
Q Consensus       326 -----~~~~l~~L~~L~~~  339 (404)
                           .+..+++|+.|+..
T Consensus       241 ~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          241 TYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHHHHCTTCCEESSC
T ss_pred             hHHHHHHHHCcccCeECCc
Confidence                 26677888888543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.82  E-value=1.1e-06  Score=82.56  Aligned_cols=137  Identities=14%  Similarity=0.031  Sum_probs=83.0

Q ss_pred             CCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhh-ccCccccEEEecCCCccc-----cCc
Q 046301          200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVV-PRLRQLRVVSLCGYKIVQ-----LPN  273 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-----lp~  273 (404)
                      ..++.+.+..+.+.......-...+++|+.|.+..+.-   ...........+ ...+.|+.|++++|.+..     ++.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l---~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~  177 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL---GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME  177 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC---CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC---CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence            46777777766554322111223356788888877651   000111122223 346789999999998753     455


Q ss_pred             ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc-----cccccccccccccccCceE
Q 046301          274 DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKFV  340 (404)
Q Consensus       274 ~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~~~~  340 (404)
                      .+..+++|++|+|++|.|.......++..+...++|++|++++| .+.     .++..+...++|++|++..
T Consensus       178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~  248 (372)
T 3un9_A          178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYF  248 (372)
T ss_dssp             HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred             HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence            66778889999999998764221122334667788999999988 444     2344455667888885543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.69  E-value=1e-05  Score=66.88  Aligned_cols=37  Identities=11%  Similarity=0.153  Sum_probs=22.4

Q ss_pred             ccccEEEecCCCccc-cCcccccCCCcceEecCCC-Ccc
Q 046301          256 RQLRVVSLCGYKIVQ-LPNDIAELKHLRYLDFSHT-AIE  292 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~-lp~~~~~L~~L~~L~l~~~-~l~  292 (404)
                      ..|+.|+++++.++. --..+..+++|+.|+|++| .|+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It   99 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE   99 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence            357777777777652 2233556666777777666 344

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.56  E-value=9.2e-05  Score=68.17  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=65.1

Q ss_pred             ccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccccccccCc-eeecCCCCccccccc-cccc
Q 046301          253 PRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLR-HLKDSHSNLLEEMPL-RIGK  329 (404)
Q Consensus       253 ~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~-~L~l~~~~~l~~lp~-~~~~  329 (404)
                      ..+++|+.+++++|.++.+|.. +..+.+|+.+++.+| ++.++..    .+.++.+|+ .+++..  .+..++. .|.+
T Consensus       223 ~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~--~l~~I~~~aF~~  295 (329)
T 3sb4_A          223 DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA--SVTAIEFGAFMG  295 (329)
T ss_dssp             HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT--TCCEECTTTTTT
T ss_pred             HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc--cceEEchhhhhC
Confidence            3478999999999999988764 788999999999987 8777765    688999999 999987  4777764 4889


Q ss_pred             cccccccCc
Q 046301          330 LTSLRTLAK  338 (404)
Q Consensus       330 l~~L~~L~~  338 (404)
                      +++|+.|.+
T Consensus       296 c~~L~~l~l  304 (329)
T 3sb4_A          296 CDNLRYVLA  304 (329)
T ss_dssp             CTTEEEEEE
T ss_pred             CccCCEEEe
Confidence            999999853

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.51  E-value=8.2e-05  Score=69.43  Aligned_cols=138  Identities=14%  Similarity=0.070  Sum_probs=82.3

Q ss_pred             hhhccCccccEEEecCCCcc----------ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCc
Q 046301          250 HVVPRLRQLRVVSLCGYKIV----------QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNL  319 (404)
Q Consensus       250 ~~~~~l~~L~~L~l~~~~~~----------~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~  319 (404)
                      .....+++|+.|.+......          .++.-+..+++|+.|+++++.-..++     + + .+++|++|++..|..
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~-----~-~-~~~~L~~L~L~~~~l  205 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG-----K-K-PRPNLKSLEIISGGL  205 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC-----S-C-BCTTCSEEEEECSBC
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec-----c-c-cCCCCcEEEEecCCC
Confidence            34567889999998765321          24455567899999999988312232     2 3 389999999987732


Q ss_pred             cccccccc--cccccccccCceEeccC--CcCCcc---c-c--ccccccccceEEcCCCCCCCHhHHHhccccCccCCCc
Q 046301          320 LEEMPLRI--GKLTSLRTLAKFVVGKG--NCYGLK---E-L--RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEA  389 (404)
Q Consensus       320 l~~lp~~~--~~l~~L~~L~~~~~~~~--~~~~~~---~-l--~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~  389 (404)
                      -......+  ..+++|+.|+++.....  ....+.   . +  ..+++|+ .|.+.++.........+.. ...+++|+.
T Consensus       206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr-~L~L~~~~i~~~~~~~la~-a~~~~~L~~  283 (362)
T 2ra8_A          206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK-WLGIVDAEEQNVVVEMFLE-SDILPQLET  283 (362)
T ss_dssp             CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCC-EEEEESCTTHHHHHHHHHH-CSSGGGCSE
T ss_pred             ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcC-EEeCCCCCCchHHHHHHHh-CccCCCCCE
Confidence            11111223  36788999976432111  111121   1 1  2467888 8999876532111122221 235789999


Q ss_pred             eEEEecC
Q 046301          390 LSLKWVN  396 (404)
Q Consensus       390 L~l~~~~  396 (404)
                      |+|++|.
T Consensus       284 LdLs~n~  290 (362)
T 2ra8_A          284 MDISAGV  290 (362)
T ss_dssp             EECCSSC
T ss_pred             EECCCCC
Confidence            9998775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.31  E-value=0.00016  Score=59.72  Aligned_cols=99  Identities=18%  Similarity=0.295  Sum_probs=64.8

Q ss_pred             ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc-cccccc----ccccccCceEeccC
Q 046301          270 QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP-LRIGKL----TSLRTLAKFVVGKG  344 (404)
Q Consensus       270 ~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l----~~L~~L~~~~~~~~  344 (404)
                      .+|.....-.+|+.||+++|.|+..-    -..+..+++|++|+|++|..+..-- ..+..+    ++|++|++..+...
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~G----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIG----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGG----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHH----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            35654322357999999999876321    1236789999999999996554321 113333    36888866655433


Q ss_pred             CcCCccccccccccccceEEcCCCCCCCH
Q 046301          345 NCYGLKELRSLMHLQEKLTISGLENVNDA  373 (404)
Q Consensus       345 ~~~~~~~l~~L~~L~~~L~l~~~~~~~~~  373 (404)
                      ....+..+.++++|+ .|.+.+|..+++.
T Consensus       128 TD~Gl~~L~~~~~L~-~L~L~~c~~Itd~  155 (176)
T 3e4g_A          128 TDKGIIALHHFRNLK-YLFLSDLPGVKEK  155 (176)
T ss_dssp             CHHHHHHGGGCTTCC-EEEEESCTTCCCH
T ss_pred             CHHHHHHHhcCCCCC-EEECCCCCCCCch
Confidence            333455677788888 8999988887764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.29  E-value=1.9e-05  Score=66.33  Aligned_cols=70  Identities=11%  Similarity=0.002  Sum_probs=37.8

Q ss_pred             hhhhhccCccccEEEecCC-Ccc-----ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301          248 VFHVVPRLRQLRVVSLCGY-KIV-----QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       248 ~~~~~~~l~~L~~L~l~~~-~~~-----~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~  317 (404)
                      ....+...+.|+.|+|++| .+.     .+...+...++|++|+|++|.|..---..+...+...++|++|++++|
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            3445556666777777776 554     233445555667777777776542100011122444466777777666

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.27  E-value=5.2e-05  Score=67.34  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=54.1

Q ss_pred             hccCccccE--EEecCCCccccCcc----cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc
Q 046301          252 VPRLRQLRV--VSLCGYKIVQLPND----IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL  325 (404)
Q Consensus       252 ~~~l~~L~~--L~l~~~~~~~lp~~----~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~  325 (404)
                      +...+.|+.  ++++.|....++..    ...+++|+.|+|++|.|..++  .+|..+..+++|+.|+|++| .+..+. 
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N-~i~~~~-  212 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGN-ELKSER-  212 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTS-CCCSGG-
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCC-ccCCch-
Confidence            334444554  55666654444332    246889999999999998775  23455778999999999998 666652 


Q ss_pred             cccccc--cccccC
Q 046301          326 RIGKLT--SLRTLA  337 (404)
Q Consensus       326 ~~~~l~--~L~~L~  337 (404)
                      .+..++  +|++|.
T Consensus       213 ~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          213 ELDKIKGLKLEELW  226 (267)
T ss_dssp             GGGGGTTSCCSEEE
T ss_pred             hhhhcccCCcceEE
Confidence            344444  555553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.23  E-value=0.00063  Score=64.44  Aligned_cols=66  Identities=14%  Similarity=0.118  Sum_probs=42.3

Q ss_pred             hhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301          247 LVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       247 ~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~  317 (404)
                      +....|.++.+|+.+++..|.+..+|.......+|+.+.+..+ ++.++..    .+.++++|+.+++..+
T Consensus       171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~----aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          171 LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQ----AFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTT----TTTTCTTCCCEECCTT
T ss_pred             ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhh----HhhCCCCCCEEecCCC
Confidence            3445677778888888887777777665555567777777633 5555443    4566666666666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.22  E-value=4.9e-05  Score=63.81  Aligned_cols=115  Identities=13%  Similarity=0.012  Sum_probs=72.3

Q ss_pred             cccCCCCccEEEeccc-CccccccccchhhhhhhccCccccEEEecCCCccc-----cCcccccCCCcceEecCCCCccc
Q 046301          220 GLHKVEYLRTFLALLL-GTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPNDIAELKHLRYLDFSHTAIEV  293 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~~~l~~  293 (404)
                      .+...+.|+.|.+..+ .-   ...........+...+.|++|+|++|.+..     +...+...+.|++|+|++|.|..
T Consensus        31 ~l~~~~~L~~L~L~~n~~i---~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNI---PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTC---CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHhcCCCCCEEEecCCCCC---CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3456788899988776 41   111122344566778899999999999863     45556667889999999998874


Q ss_pred             CCCCCCCccccccccCceeec--CCCCcccc-----ccccccccccccccCc
Q 046301          294 LPESKLFPDVGNLVNLRHLKD--SHSNLLEE-----MPLRIGKLTSLRTLAK  338 (404)
Q Consensus       294 lp~~~~p~~~~~l~~L~~L~l--~~~~~l~~-----lp~~~~~l~~L~~L~~  338 (404)
                      ---..+...+...++|++|++  ++| .+..     +...+...++|++|++
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L  158 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGY  158 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEec
Confidence            110112234677788999999  666 3332     2233344455555533

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.09  E-value=0.001  Score=62.98  Aligned_cols=129  Identities=11%  Similarity=0.118  Sum_probs=58.8

Q ss_pred             hhhccCccccEEEecCCCccccCcc-cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc-----cc
Q 046301          250 HVVPRLRQLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE-----EM  323 (404)
Q Consensus       250 ~~~~~l~~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~-----~l  323 (404)
                      ..|.++.+|+.+.+..+ +..++.. +.. .+|+.+.+ .+.++.++..    .+.++++|+.+.+.++ ...     .+
T Consensus       220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~----aF~~c~~L~~l~l~~~-~~~~~~~~~I  291 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASR----AFYYCPELAEVTTYGS-TFNDDPEAMI  291 (401)
T ss_dssp             TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTT----TTTTCTTCCEEEEESS-CCCCCTTCEE
T ss_pred             hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChh----HhhCCCCCCEEEeCCc-cccCCcccEE
Confidence            34445555555555432 3333222 222 34444444 2233333332    4566667777766654 222     34


Q ss_pred             ccc-ccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301          324 PLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       324 p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      +.. |..+++|+.+.+-.  ....-.-..+..+++|+ .+.+..  ++.   ......+.+| +|+.+.+..+
T Consensus       292 ~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~-~l~lp~--~l~---~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          292 HPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVT-QLTIPA--NVT---QINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             CTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCC-EEEECT--TCC---EECTTSSSSS-CCCEEEECCS
T ss_pred             CHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCcc-EEEECc--ccc---EEcHHhCCCC-CCCEEEEcCC
Confidence            433 66666666664320  00000112344555666 666632  122   2223456667 7777777554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.73  E-value=0.0024  Score=49.93  Aligned_cols=54  Identities=17%  Similarity=0.183  Sum_probs=45.3

Q ss_pred             cEEEecCCCcc--ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCC
Q 046301          259 RVVSLCGYKIV--QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSN  318 (404)
Q Consensus       259 ~~L~l~~~~~~--~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~  318 (404)
                      ..++.+++.++  .+|..+.  .+|++|+|++|.|+.+|.+    .+..+++|++|+|.+|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPG----LLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChh----hhhhccccCEEEecCCC
Confidence            47888888888  8897755  4799999999999988865    57889999999999883

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.27  E-value=0.043  Score=50.25  Aligned_cols=148  Identities=10%  Similarity=0.020  Sum_probs=84.5

Q ss_pred             CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccch
Q 046301            2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRS   81 (404)
Q Consensus         2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~   81 (404)
                      ++.+|+.+|+.+++.... +.......   .+.+..+++.|+|.|+++..++..+....+...+-   ....   .....
T Consensus       199 ~l~pl~~~e~~~~l~~~~-~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~---~~~~~  268 (350)
T 2qen_A          199 LVKPFDKDTSVEFLKRGF-REVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL---EVAKG  268 (350)
T ss_dssp             ECCCCCHHHHHHHHHHHH-HTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH---HHHHH
T ss_pred             eCCCCCHHHHHHHHHHHH-HHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHH---HHHH---HHHHH
Confidence            578999999999997643 21111111   35778999999999999999988654322332221   1110   00000


Q ss_pred             hHHH-HHHHHHhcCChhhhhhhhhcccCCCCceeChhHHHHHHHHCCCcccCCCCCcHHHHHHHHHHHHhhCCCcccccC
Q 046301           82 SIMG-ALRVSYHYLPSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEELGRKSFQVLHSRSFFQWSKI  160 (404)
Q Consensus        82 ~i~~-~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~~~~  160 (404)
                      .+.. +-.+.+ . ++..+..+..+|+   + ..+...+........-      ... ......+++.|++.+++...+ 
T Consensus       269 ~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~~------~~~-~~~~~~~l~~L~~~gli~~~~-  334 (350)
T 2qen_A          269 LIMGELEELRR-R-SPRYVDILRAIAL---G-YNRWSLIRDYLAVKGT------KIP-EPRLYALLENLKKMNWIVEED-  334 (350)
T ss_dssp             HHHHHHHHHHH-H-CHHHHHHHHHHHT---T-CCSHHHHHHHHHHTTC------CCC-HHHHHHHHHHHHHTTSEEEET-
T ss_pred             HHHHHHHHHHh-C-ChhHHHHHHHHHh---C-CCCHHHHHHHHHHHhC------CCC-HHHHHHHHHHHHhCCCEEecC-
Confidence            1111 111222 2 6778889888887   3 2344555443322110      011 144567899999999997542 


Q ss_pred             CCceEE-echHHHHHH
Q 046301          161 DASRFL-MHDLIHDLA  175 (404)
Q Consensus       161 ~~~~~~-mhdli~~~~  175 (404)
                        ..+. .|.++++..
T Consensus       335 --~~y~~~~p~~~~~~  348 (350)
T 2qen_A          335 --NTYKIADPVVATVL  348 (350)
T ss_dssp             --TEEEESSHHHHHHH
T ss_pred             --CEEEEecHHHHHHH
Confidence              3444 467777654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.75  E-value=0.032  Score=51.26  Aligned_cols=146  Identities=11%  Similarity=0.046  Sum_probs=84.0

Q ss_pred             CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccch
Q 046301            2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDRS   81 (404)
Q Consensus         2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~~   81 (404)
                      ++.+|+.+|+.+++...+ +...... +..    ..+++.|+|.|+++..++..+....+...|-.   ...   .....
T Consensus       205 ~l~~l~~~e~~~~l~~~~-~~~~~~~-~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~---~~~~~  272 (357)
T 2fna_A          205 ELKPFSREEAIEFLRRGF-QEADIDF-KDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTL---EYAKK  272 (357)
T ss_dssp             EECCCCHHHHHHHHHHHH-HHHTCCC-CCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHH---HHHHH
T ss_pred             ecCCCCHHHHHHHHHHHH-HHcCCCC-CcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHH---HHH---HHHHH
Confidence            578999999999998743 2111111 122    78999999999999999988754323333321   110   00001


Q ss_pred             hHHHHHH-HHHh--cCChhhhhhhhhcccCCCCceeChhHHHHHHH-HCCCcccCCCCCcHHHHHHHHHHHHhhCCCccc
Q 046301           82 SIMGALR-VSYH--YLPSYVKRCFAYCSFLPKGYRFDERQIVLLWM-AEGLLQHETYGKQMEELGRKSFQVLHSRSFFQW  157 (404)
Q Consensus        82 ~i~~~l~-~sy~--~L~~~~k~cfl~~a~fp~~~~i~~~~li~~w~-~~g~~~~~~~~~~~~~~~~~~~~~L~~~sli~~  157 (404)
                      .+...+. ..++  .+++..+..+..+|+   +.  +...+....- ..|.       .........+++.|+++++|..
T Consensus       273 ~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~  340 (357)
T 2fna_A          273 LILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIK  340 (357)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEe
Confidence            1212222 1111  577888999988887   32  4444433211 1121       0011345678999999999975


Q ss_pred             ccCCCceEE-echHHHHH
Q 046301          158 SKIDASRFL-MHDLIHDL  174 (404)
Q Consensus       158 ~~~~~~~~~-mhdli~~~  174 (404)
                      .+   ..+. .|.++++.
T Consensus       341 ~~---~~y~f~~~~~~~~  355 (357)
T 2fna_A          341 EG---EKYCPSEPLISLA  355 (357)
T ss_dssp             SS---SCEEESSHHHHHH
T ss_pred             cC---CEEEecCHHHHHh
Confidence            43   3344 57788765

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=93.47  E-value=0.15  Score=47.77  Aligned_cols=141  Identities=10%  Similarity=-0.065  Sum_probs=79.2

Q ss_pred             CCCCCCChhhHHHHHHHc---ccCCCCCCCCccHHHHHHHHHHhcC------CCchhHHHHHHHhh------cC--CChh
Q 046301            1 HSLRNLLRDDCLCIFVQH---SLGRTDFVAHQYLSEIGEKIVDRCN------GSPLAAKTLGSLLR------DK--YDPK   63 (404)
Q Consensus         1 y~~~~L~~~~a~~Lf~~~---af~~~~~~~~~~~~~l~~~i~~~c~------GlPLal~~~g~~L~------~~--~~~~   63 (404)
                      +++++++.++++++|...   +|....  ..   .+.+..+++.|+      |.|..+..+.....      +.  -+.+
T Consensus       210 i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~  284 (412)
T 1w5s_A          210 LHLPAYKSRELYTILEQRAELGLRDTV--WE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSED  284 (412)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHBCTTS--CC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred             eeeCCCCHHHHHHHHHHHHHhcCCCCC--CC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence            368899999999999755   443221  11   366788888998      99976655544221      11  1123


Q ss_pred             HHHHHHhhhhhhccccchhHHHHHHHHHhcCChhhhhhhhhcccCC--CCceeChhHHHHHHHHC--CCcccCCCCCcHH
Q 046301           64 DWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLP--KGYRFDERQIVLLWMAE--GLLQHETYGKQME  139 (404)
Q Consensus        64 ~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp--~~~~i~~~~li~~w~~~--g~~~~~~~~~~~~  139 (404)
                      .+..++....        . ...+.-.+..||...+.++..+|.++  .+..++..++...+...  .....   .....
T Consensus       285 ~v~~~~~~~~--------~-~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  352 (412)
T 1w5s_A          285 LVRKAVSENE--------A-ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV---KPRGY  352 (412)
T ss_dssp             HHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC---CCCCH
T ss_pred             HHHHHHHHHh--------c-cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC---CCCCH
Confidence            3333322210        0 22344466789999999998888764  23345555555444210  00000   00112


Q ss_pred             HHHHHHHHHHhhCCCcccc
Q 046301          140 ELGRKSFQVLHSRSFFQWS  158 (404)
Q Consensus       140 ~~~~~~~~~L~~~sli~~~  158 (404)
                      .....+++.|.+.++|...
T Consensus       353 ~~~~~~l~~L~~~gli~~~  371 (412)
T 1w5s_A          353 TQYHIYLKHLTSLGLVDAK  371 (412)
T ss_dssp             HHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHhCCCEEee
Confidence            4456789999999999764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.12  E-value=0.48  Score=44.17  Aligned_cols=128  Identities=15%  Similarity=0.163  Sum_probs=76.7

Q ss_pred             hhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-c
Q 046301          249 FHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-I  327 (404)
Q Consensus       249 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~  327 (404)
                      ...|.++..|+.+.+..+...--...+..+..|+.+.+. +.++.++..    .+.++.+|+.+.+..+  +..+... |
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~aF  330 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPES----VFAGCISLKSIDIPEG--ITQILDDAF  330 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTT
T ss_pred             cceeeecccccEEecccccceecCcccccccccccccCC-CcccccCce----eecCCCCcCEEEeCCc--ccEehHhHh
Confidence            345777788888887654432223456677888888885 456666654    5778889999998764  6667654 8


Q ss_pred             cccccccccCceEeccCCcCCc--cccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301          328 GKLTSLRTLAKFVVGKGNCYGL--KELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       328 ~~l~~L~~L~~~~~~~~~~~~~--~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      .++++|+.+.+   .. +...+  ..+.++++|+ .+.+.+.     ...  ...+..+.+|+.+.+.-+
T Consensus       331 ~~C~~L~~i~i---p~-sv~~I~~~aF~~C~~L~-~i~~~~~-----~~~--~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          331 AGCEQLERIAI---PS-SVTKIPESAFSNCTALN-NIEYSGS-----RSQ--WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TTCTTCCEEEE---CT-TCCBCCGGGGTTCTTCC-EEEESSC-----HHH--HHTCBCCCCC--------
T ss_pred             hCCCCCCEEEE---Cc-ccCEEhHhHhhCCCCCC-EEEECCc-----eee--hhhhhccCCCCEEEeCCC
Confidence            88888888733   21 11122  3466777888 7777541     111  234677888888877543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.08  E-value=0.3  Score=45.25  Aligned_cols=79  Identities=16%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             hhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-cc
Q 046301          251 VVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IG  328 (404)
Q Consensus       251 ~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~  328 (404)
                      .|.++..|+.+.+.. .+..++ ..+..+.+|+.+.+.++.++.++..    .+.++.+|+.+.+..+  +..++.. |.
T Consensus       258 aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~--l~~I~~~aF~  330 (379)
T 4h09_A          258 LLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTA--LKTIQVYAFK  330 (379)
T ss_dssp             TTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTT
T ss_pred             ccceeehhccccccc-cceeccccccccccccccccccccccceehhh----hhcCCCCCCEEEcCcc--ccEEHHHHhh
Confidence            445555555555543 233333 2345556666666666666655543    4566666666666543  4555433 55


Q ss_pred             cccccccc
Q 046301          329 KLTSLRTL  336 (404)
Q Consensus       329 ~l~~L~~L  336 (404)
                      ++++|+.+
T Consensus       331 ~C~~L~~i  338 (379)
T 4h09_A          331 NCKALSTI  338 (379)
T ss_dssp             TCTTCCCC
T ss_pred             CCCCCCEE
Confidence            66666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.31  E-value=0.12  Score=40.14  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=31.6

Q ss_pred             cccEEEecCCCccccCcc-cccCCCcceEecCCCCcc
Q 046301          257 QLRVVSLCGYKIVQLPND-IAELKHLRYLDFSHTAIE  292 (404)
Q Consensus       257 ~L~~L~l~~~~~~~lp~~-~~~L~~L~~L~l~~~~l~  292 (404)
                      +|+.|+|++|.|+.+|.. +..+++|++|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            689999999999999865 578999999999999764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=90.94  E-value=0.28  Score=45.80  Aligned_cols=83  Identities=12%  Similarity=0.095  Sum_probs=61.9

Q ss_pred             hhhhhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc
Q 046301          248 VFHVVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR  326 (404)
Q Consensus       248 ~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~  326 (404)
                      ....|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+++..+ ++.+...    .+.++.+|+.+.+..+  +..++..
T Consensus       289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~c~~L~~i~lp~~--l~~I~~~  360 (394)
T 4fs7_A          289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKR----SFRGCTSLSNINFPLS--LRKIGAN  360 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT----TTTTCTTCCEECCCTT--CCEECTT
T ss_pred             ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHH----hccCCCCCCEEEECcc--ccEehHH
Confidence            3456788889999998754 55554 45778889999998644 6666554    5888999999999765  6777654


Q ss_pred             -ccccccccccCc
Q 046301          327 -IGKLTSLRTLAK  338 (404)
Q Consensus       327 -~~~l~~L~~L~~  338 (404)
                       +.++++|+.+.+
T Consensus       361 aF~~C~~L~~i~l  373 (394)
T 4fs7_A          361 AFQGCINLKKVEL  373 (394)
T ss_dssp             TBTTCTTCCEEEE
T ss_pred             HhhCCCCCCEEEE
Confidence             888889988843

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=90.93  E-value=0.65  Score=43.28  Aligned_cols=16  Identities=19%  Similarity=0.142  Sum_probs=8.1

Q ss_pred             hhccCccccEEEecCC
Q 046301          251 VVPRLRQLRVVSLCGY  266 (404)
Q Consensus       251 ~~~~l~~L~~L~l~~~  266 (404)
                      .+..+..|+.+.+..+
T Consensus       248 ~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          248 VFYGCTDLESISIQNN  263 (394)
T ss_dssp             TTTTCSSCCEEEECCT
T ss_pred             cccccccceeEEcCCC
Confidence            3445555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.08  E-value=0.68  Score=43.12  Aligned_cols=103  Identities=15%  Similarity=0.187  Sum_probs=73.2

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCCC
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPESK  298 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~  298 (404)
                      .+.++..|+.+.+....        ..+....|.++..|+.+.+. +.+..++. .+..+.+|+.+++..+ ++.+... 
T Consensus       260 aF~~c~~L~~i~lp~~~--------~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~-  328 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSV--------VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD-  328 (394)
T ss_dssp             TTTTCSSCCEEECCTTC--------CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT-
T ss_pred             eeeecccccEEeccccc--------ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh-
Confidence            34566777777664322        23445568888999999986 45666654 4677889999999754 6655544 


Q ss_pred             CCccccccccCceeecCCCCcccccccc-ccccccccccCc
Q 046301          299 LFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK  338 (404)
Q Consensus       299 ~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~  338 (404)
                         .+.++.+|+.+.+..+  +..++.. |.++++|+.+.+
T Consensus       329 ---aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          329 ---AFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             ---TTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEE
T ss_pred             ---HhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEE
Confidence               5888999999999764  6777654 888999998843

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.11  E-value=0.67  Score=42.82  Aligned_cols=81  Identities=14%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             hhhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-c
Q 046301          250 HVVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-I  327 (404)
Q Consensus       250 ~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~  327 (404)
                      ..|.++..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++..    .+.++.+|+.+.+..+ .+..++.. +
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~----aF~~c~~L~~i~l~~~-~i~~I~~~aF  306 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL----LCSGCSNLTKVVMDNS-AIETLEPRVF  306 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT----TTTTCTTCCEEEECCT-TCCEECTTTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc----cccccccccccccccc-ccceehhhhh
Confidence            34555666666666543 33332 23445666777666433 4444433    4667777888877665 56666544 6


Q ss_pred             cccccccccC
Q 046301          328 GKLTSLRTLA  337 (404)
Q Consensus       328 ~~l~~L~~L~  337 (404)
                      .++++|+.+.
T Consensus       307 ~~c~~L~~i~  316 (379)
T 4h09_A          307 MDCVKLSSVT  316 (379)
T ss_dssp             TTCTTCCEEE
T ss_pred             cCCCCCCEEE
Confidence            7777777663

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=84.42  E-value=0.16  Score=42.51  Aligned_cols=70  Identities=17%  Similarity=0.199  Sum_probs=41.0

Q ss_pred             hhhhhccCccccEEEecCC-Ccc-----ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301          248 VFHVVPRLRQLRVVSLCGY-KIV-----QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       248 ~~~~~~~l~~L~~L~l~~~-~~~-----~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~  317 (404)
                      +...+.+-+.|+.|+|+++ .|.     .+-..+..=..|+.|+|++|.|..---..+-..+..-+.|++|+|+.|
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN  108 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence            3444556677888888875 554     233445555678888888887752110011112334467888888877

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=83.96  E-value=1.2  Score=39.97  Aligned_cols=137  Identities=15%  Similarity=0.046  Sum_probs=73.7

Q ss_pred             CCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcC--------CChhHHHHHHhhhh
Q 046301            2 SLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDK--------YDPKDWEDVLTSKI   73 (404)
Q Consensus         2 ~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~--------~~~~~w~~~l~~~~   73 (404)
                      ++.+++.+|..+++.+.+..... ...   .+....++++|+|.|-.+..+...+...        -+.+..+.++... 
T Consensus       164 ~l~~~~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~-  238 (324)
T 1hqc_A          164 HLEYYTPEELAQGVMRDARLLGV-RIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL-  238 (324)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH-
T ss_pred             ecCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-
Confidence            57889999999998887643321 111   3667889999999998887776654321        1222333322221 


Q ss_pred             hhccccchhHHHHHHHHHhcCChhhhhhhhhcccCCCCc-----------eeChhHHHH----HHHHCCCcccCCCCCcH
Q 046301           74 WDLAEDRSSIMGALRVSYHYLPSYVKRCFAYCSFLPKGY-----------RFDERQIVL----LWMAEGLLQHETYGKQM  138 (404)
Q Consensus        74 ~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~-----------~i~~~~li~----~w~~~g~~~~~~~~~~~  138 (404)
                                    ...+..++..++..+..++....+-           .+++..+.+    +-+..|++.....+...
T Consensus       239 --------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~  304 (324)
T 1hqc_A          239 --------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVP  304 (324)
T ss_dssp             --------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEE
T ss_pred             --------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCcccee
Confidence                          1123344444555554433222221           233333322    34567787654455566


Q ss_pred             HHHHHHHHH-HHhhCCCccc
Q 046301          139 EELGRKSFQ-VLHSRSFFQW  157 (404)
Q Consensus       139 ~~~~~~~~~-~L~~~sli~~  157 (404)
                      .+.|..+++ ++.+|+|||+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~  324 (324)
T 1hqc_A          305 TELAYRHLGYPPPVGPLLEP  324 (324)
T ss_dssp             CHHHHHHTTCCCCC------
T ss_pred             cHHHHHHHhcCCCCCCCCCC
Confidence            677888887 8888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	404
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.4 bits (174), Expect = 1e-14
 Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 7/104 (6%)

Query: 1   HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKY 60
             + +L  D+C      + +        +    +  K ++  +G+P              
Sbjct: 180 IEVTSLEIDECYDFLEAYGMPMPVGEKEED---VLNKTIELSSGNPATLMMFFKSCE--- 233

Query: 61  DPKDWEDVLTSKIWDLAEDRSSIMGALRVSYHYLPSYVKRCFAY 104
            PK +E +        +     +      SY  L   ++RC   
Sbjct: 234 -PKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEV 276

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 19/147 (12%)

Query: 200 RNLRHLSYLTSQFDGIKRFEGLHKVEYLR----------TFLALLLGTRKTFYVTNNLVF 249
            NL  L    +Q   +    GL K+  L+              L   T            
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 250 HVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNL 309
             +  L+ L  ++L    I  +   ++ L  L+ L F++  +  +        + NL N+
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSS------LANLTNI 353

Query: 310 RHLKDSHSNLLEEMPLRIGKLTSLRTL 336
             L   H+ + +  PL    LT +  L
Sbjct: 354 NWLSAGHNQISDLTPL--ANLTRITQL 378

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 245 NNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVG 304
           +N +  +      L  +++   K+++LP   A    L  L  S   +  +PE        
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEVPEL------- 322

Query: 305 NLVNLRHLKDSHSNLLEEMPLRIGKLTSLR 334
              NL+ L   + N L E P     +  LR
Sbjct: 323 -PQNLKQLHVEY-NPLREFPDIPESVEDLR 350

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 245 NNLVFHVVPRL--RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPD 302
            NL   V  RL  + +         + Q   +      ++++D S++ IE    S L   
Sbjct: 10  KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE---VSTLHGI 66

Query: 303 VGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 336
           +     L++L      L + +   + K ++L  L
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 257 QLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSH 316
            LRVV      + ++P D+        LD  +  I  + +     D  NL NL  L   +
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDG----DFKNLKNLHTLILIN 64

Query: 317 SNLLEEMPLRIGKLTSLRTL 336
           + + +  P     L  L  L
Sbjct: 65  NKISKISPGAFAPLVKLERL 84

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 271 LPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL 325
           LP  + +LK L  L+ S   +         P  GNL        +++  L   PL
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNL-----CGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 258 LRVVSLCGY--KIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDS 315
              V L G    I ++   ++ LK  ++L  S   IE +        +  + NLR L   
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI------SSLSGMENLRILSLG 78

Query: 316 H 316
            
Sbjct: 79  R 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	404
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.29
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.29
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.27
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.2
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.17
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.16
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.15
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.14
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.12
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.08
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.06
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.04
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.98
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.96
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.95
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.83
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.78
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.66
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.12
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.84
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.29
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.26
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.19
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.33

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.60  E-value=5.7e-17  Score=144.78  Aligned_cols=97  Identities=12%  Similarity=0.116  Sum_probs=82.8

Q ss_pred             CCCCCCChhhHHHHHHHcccCCCCCCCCccHHHHHHHHHHhcCCCchhHHHHHHHhhcCCChhHHHHHHhhhhhhccccc
Q 046301            1 HSLRNLLRDDCLCIFVQHSLGRTDFVAHQYLSEIGEKIVDRCNGSPLAAKTLGSLLRDKYDPKDWEDVLTSKIWDLAEDR   80 (404)
Q Consensus         1 y~~~~L~~~~a~~Lf~~~af~~~~~~~~~~~~~l~~~i~~~c~GlPLal~~~g~~L~~~~~~~~w~~~l~~~~~~~~~~~   80 (404)
                      |+|++|+.+|||+||+.+||+...   .+..++++++|+++|+|+||||+++|+.|+.+ +.+.|....+.+..   ...
T Consensus       180 ~~l~~L~~~ea~~Lf~~~~~~~~~---~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~~~~~L~~---~~~  252 (277)
T d2a5yb3         180 IEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLES---RGL  252 (277)
T ss_dssp             EECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHHHHH---HCS
T ss_pred             EECCCCCHHHHHHHHHHHhCCccC---chhhHHHHHHHHHHhCCCHHHHHHHHHHhccC-CHHHHHHHHHHHhc---CcH
Confidence            679999999999999999986653   34568999999999999999999999999988 78899887776632   223


Q ss_pred             hhHHHHHHHHHhcCChhhhhhhhh
Q 046301           81 SSIMGALRVSYHYLPSYVKRCFAY  104 (404)
Q Consensus        81 ~~i~~~l~~sy~~L~~~~k~cfl~  104 (404)
                      ..+..++++||++||+++|.||-+
T Consensus       253 ~~v~~il~~sY~~L~~~lk~c~~~  276 (277)
T d2a5yb3         253 VGVECITPYSYKSLAMALQRCVEV  276 (277)
T ss_dssp             STTCCCSSSSSSSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHh
Confidence            578899999999999999999965

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.7e-13  Score=109.60  Aligned_cols=131  Identities=21%  Similarity=0.139  Sum_probs=85.2

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-cccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKL  330 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l  330 (404)
                      +.++..+|.|+|++|+|+.+|..+..+++|++||+++|.|+.++      .+..+++|++|++++| .+..+|.+ +..+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~------~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l   86 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD------GFPLLRRLKTLLVNNN-RICRIGEGLDQAL   86 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC------CCCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC------CcccCcchhhhhcccc-cccCCCccccccc
Confidence            44566778888888888877766667788888888888887764      2777888888888887 67777765 4567


Q ss_pred             ccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceE
Q 046301          331 TSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALS  391 (404)
Q Consensus       331 ~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~  391 (404)
                      ++|++|++.++.......+..+..+++|+ .|.+.++.- ...+...+..+..+++|+.|+
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~-~L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLT-YLCILRNPV-TNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCC-EEECCSSGG-GGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccceeccccccccccccccccccccc-hhhcCCCcc-ccccchHHHHHHHCCCcCeeC
Confidence            77888755433322222334566677777 777776532 122222222355667777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=5.5e-13  Score=103.40  Aligned_cols=99  Identities=25%  Similarity=0.327  Sum_probs=58.0

Q ss_pred             cEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCc
Q 046301          259 RVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK  338 (404)
Q Consensus       259 ~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~  338 (404)
                      |+|++++|.++.+|. ++.+++|++|++++|.|+.+|..     ++.+++|++|++++| .+..+| +++++++|++|++
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~-----~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGG-----GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhh-----hhhhhcccccccccc-cccccC-ccccccccCeEEC
Confidence            466666666666653 66666666666666666655433     666666666666666 566665 3666666666644


Q ss_pred             eEeccCCcCCccccccccccccceEEcC
Q 046301          339 FVVGKGNCYGLKELRSLMHLQEKLTISG  366 (404)
Q Consensus       339 ~~~~~~~~~~~~~l~~L~~L~~~L~l~~  366 (404)
                      ..+.......+..+..+++|+ .|++.+
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~-~L~l~~   99 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLV-LLNLQG   99 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCC-EEECTT
T ss_pred             CCCccCCCCCchhhcCCCCCC-EEECCC
Confidence            433222222234455556666 666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.3e-12  Score=112.18  Aligned_cols=177  Identities=18%  Similarity=0.101  Sum_probs=130.8

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCccccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAE  277 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~  277 (404)
                      ++.+++.|.+..+.+..+. ...+.++++|+.|.+..+.       ...+  +.+..+++|++|++++|++...|..+..
T Consensus        29 lp~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~-------l~~l--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   98 (266)
T d1p9ag_          29 LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-------LTKL--QVDGTLPVLGTLDLSHNQLQSLPLLGQT   98 (266)
T ss_dssp             CCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-------CCEE--ECCSCCTTCCEEECCSSCCSSCCCCTTT
T ss_pred             cCcCCCEEECcCCcCCCcC-HHHhhcccccccccccccc-------cccc--cccccccccccccccccccccccccccc
Confidence            4567888888887766543 2456789999999998765       1122  1356789999999999999988989999


Q ss_pred             CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCceEeccCCcCCcccccccc
Q 046301          278 LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCYGLKELRSLM  356 (404)
Q Consensus       278 L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~  356 (404)
                      +++|++|+++++.+..++..    .+..+.++++|++++| .+..+|.. +..+++|+.|++..+... ......+..++
T Consensus        99 l~~L~~L~l~~~~~~~~~~~----~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~-~~~~~~~~~l~  172 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLE  172 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCT
T ss_pred             ccccccccccccccceeecc----cccccccccccccccc-ccceeccccccccccchhccccccccc-ccCcccccccc
Confidence            99999999999988876654    5778899999999988 67777765 667788888855433221 22234477888


Q ss_pred             ccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          357 HLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       357 ~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +|+ .|+++++. +..    +|..+..+++|+.|+|+.|.
T Consensus       173 ~L~-~L~Ls~N~-L~~----lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         173 NLD-TLLLQENS-LYT----IPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TCC-EEECCSSC-CCC----CCTTTTTTCCCSEEECCSCC
T ss_pred             ccc-eeecccCC-Ccc----cChhHCCCCCCCEEEecCCC
Confidence            999 89998754 333    34456678899999998664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=1.4e-11  Score=104.77  Aligned_cols=163  Identities=20%  Similarity=0.278  Sum_probs=120.8

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKH  280 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~  280 (404)
                      .++.+.+..+.+.   .+.++..+++|+.|.+.++.       ...+.  .+..+++|++|++++|+++.+| .+..+++
T Consensus        47 ~L~~L~l~~~~i~---~l~~l~~l~~L~~L~L~~n~-------i~~l~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~  113 (210)
T d1h6ta2          47 SIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGNK-------LTDIK--PLANLKNLGWLFLDENKVKDLS-SLKDLKK  113 (210)
T ss_dssp             TCCEEECTTSCCC---CCTTGGGCTTCCEEECCSSC-------CCCCG--GGTTCTTCCEEECCSSCCCCGG-GGTTCTT
T ss_pred             CccEEECcCCCCC---CchhHhhCCCCCEEeCCCcc-------ccCcc--ccccCccccccccccccccccc-ccccccc
Confidence            3455555444443   34456788999999998765       12222  2678999999999999999887 5888999


Q ss_pred             cceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccccc
Q 046301          281 LRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQE  360 (404)
Q Consensus       281 L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  360 (404)
                      |+.|++++|.+..++      .+..+++|+.+++++| .+...+ .+.++++|+++.+.   .+....+..+.++++|+ 
T Consensus       114 L~~L~l~~~~~~~~~------~l~~l~~l~~l~~~~n-~l~~~~-~~~~l~~L~~l~l~---~n~l~~i~~l~~l~~L~-  181 (210)
T d1h6ta2         114 LKSLSLEHNGISDIN------GLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLE---DNQISDIVPLAGLTKLQ-  181 (210)
T ss_dssp             CCEEECTTSCCCCCG------GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECC---SSCCCCCGGGTTCTTCC-
T ss_pred             ccccccccccccccc------cccccccccccccccc-cccccc-cccccccccccccc---cccccccccccCCCCCC-
Confidence            999999999887654      3889999999999988 566654 47778888888554   33334456688899999 


Q ss_pred             ceEEcCCCCCCCHhHHHhccccCccCCCceEEEe
Q 046301          361 KLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW  394 (404)
Q Consensus       361 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  394 (404)
                      .|.++++. +..+    + .+.++++|+.|+|+.
T Consensus       182 ~L~Ls~N~-i~~l----~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         182 NLYLSKNH-ISDL----R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSC-CCBC----G-GGTTCTTCSEEEEEE
T ss_pred             EEECCCCC-CCCC----h-hhcCCCCCCEEEccC
Confidence            99998763 3332    2 488899999999963

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=1.9e-11  Score=102.94  Aligned_cols=159  Identities=23%  Similarity=0.275  Sum_probs=96.1

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKH  280 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~  280 (404)
                      .++.+.+..+.+..   +.++..+++|++|.+.++.       .....  .+.++++|++|++++|.+..+|. +..+++
T Consensus        41 ~l~~L~l~~~~i~~---l~~l~~l~nL~~L~Ls~N~-------l~~~~--~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~  107 (199)
T d2omxa2          41 QVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQ-------LTDIT--PLKNLTKLVDILMNNNQIADITP-LANLTN  107 (199)
T ss_dssp             TCCEEECTTSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCG--GGTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             CCCEEECCCCCCCC---ccccccCCCcCcCcccccc-------ccCcc--cccCCcccccccccccccccccc-cccccc
Confidence            34455554444332   3445567777777776654       11222  26677777777777777776653 677777


Q ss_pred             cceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCcccccccccccc
Q 046301          281 LRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQE  360 (404)
Q Consensus       281 L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~  360 (404)
                      |+.|+++++.+..++      .+..+++|+.|++++| .+..+| .+..+++|+.|.+.   .+....+..+.++++|+ 
T Consensus       108 L~~L~l~~~~~~~~~------~~~~l~~L~~L~l~~n-~l~~~~-~l~~~~~L~~L~l~---~n~l~~l~~l~~l~~L~-  175 (199)
T d2omxa2         108 LTGLTLFNNQITDID------PLKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLNFS---SNQVTDLKPLANLTTLE-  175 (199)
T ss_dssp             CSEEECCSSCCCCCG------GGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEECC---SSCCCCCGGGTTCTTCC-
T ss_pred             ccccccccccccccc------ccchhhhhHHhhhhhh-hhcccc-cccccccccccccc---cccccCCccccCCCCCC-
Confidence            777777777666443      2667777777777777 455554 46667777777443   22233445566777777 


Q ss_pred             ceEEcCCCCCCCHhHHHhccccCccCCCce
Q 046301          361 KLTISGLENVNDAEDAKEAQLNGKEKLEAL  390 (404)
Q Consensus       361 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L  390 (404)
                      .|.++++. +..++     .+.++++|+.|
T Consensus       176 ~L~ls~N~-i~~i~-----~l~~L~~L~~L  199 (199)
T d2omxa2         176 RLDISSNK-VSDIS-----VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSC-CCCCG-----GGGGCTTCSEE
T ss_pred             EEECCCCC-CCCCc-----cccCCCCCCcC
Confidence            77777653 33322     25566666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=2.8e-11  Score=101.87  Aligned_cols=147  Identities=20%  Similarity=0.275  Sum_probs=113.8

Q ss_pred             cCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCc
Q 046301          222 HKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFP  301 (404)
Q Consensus       222 ~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~  301 (404)
                      ..++.++.|.+..+.-       ..+  +.+..+++|++|++++|.++.+++ ++.+++|++|++++|.+..++      
T Consensus        37 ~~l~~l~~L~l~~~~i-------~~l--~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~------  100 (199)
T d2omxa2          37 TDLDQVTTLQADRLGI-------KSI--DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT------  100 (199)
T ss_dssp             HHHTTCCEEECTTSCC-------CCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG------
T ss_pred             HHhcCCCEEECCCCCC-------CCc--cccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc------
Confidence            4567888898877651       111  237789999999999999998875 999999999999999988765      


Q ss_pred             cccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccc
Q 046301          302 DVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL  381 (404)
Q Consensus       302 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l  381 (404)
                      .+.++++|++|++++| ....++ .+..+++|+.|.+.   .+....++.+..+++++ .|.+.++.- ..++     .+
T Consensus       101 ~l~~l~~L~~L~l~~~-~~~~~~-~~~~l~~L~~L~l~---~n~l~~~~~l~~~~~L~-~L~l~~n~l-~~l~-----~l  168 (199)
T d2omxa2         101 PLANLTNLTGLTLFNN-QITDID-PLKNLTNLNRLELS---SNTISDISALSGLTSLQ-QLNFSSNQV-TDLK-----PL  168 (199)
T ss_dssp             GGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEECC---SSCCCCCGGGTTCTTCS-EEECCSSCC-CCCG-----GG
T ss_pred             cccccccccccccccc-cccccc-ccchhhhhHHhhhh---hhhhccccccccccccc-ccccccccc-cCCc-----cc
Confidence            2889999999999988 455554 47888899988553   33334556688888898 899887542 3332     37


Q ss_pred             cCccCCCceEEEecC
Q 046301          382 NGKEKLEALSLKWVN  396 (404)
Q Consensus       382 ~~l~~L~~L~l~~~~  396 (404)
                      .++++|+.|+++.|.
T Consensus       169 ~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         169 ANLTTLERLDISSNK  183 (199)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCC
Confidence            889999999999886

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.7e-11  Score=108.16  Aligned_cols=153  Identities=20%  Similarity=0.134  Sum_probs=115.8

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCcccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVG  304 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~  304 (404)
                      +.++.|.+.++.       ...+++..|.++++|++|++++|.++.+|. ++.+++|++|++++|++...+..     +.
T Consensus        31 ~~l~~L~Ls~N~-------i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~-----~~   97 (266)
T d1p9ag_          31 KDTTILHLSENL-------LYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLL-----GQ   97 (266)
T ss_dssp             TTCCEEECTTSC-------CSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCC-----TT
T ss_pred             cCCCEEECcCCc-------CCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccc-----cc
Confidence            578999988765       345666789999999999999999998875 57899999999999999876654     89


Q ss_pred             ccccCceeecCCCCcccccc-ccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccC
Q 046301          305 NLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNG  383 (404)
Q Consensus       305 ~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~  383 (404)
                      ++++|++|++++| ....++ ..+..+.++++|.+..+... ......+..+++++ .+.+.++.    +....+..+..
T Consensus        98 ~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~-~l~l~~N~----l~~~~~~~~~~  170 (266)
T d1p9ag_          98 TLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLE-KLSLANNN----LTELPAGLLNG  170 (266)
T ss_dssp             TCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC-EEECTTSC----CSCCCTTTTTT
T ss_pred             ccccccccccccc-ccceeeccccccccccccccccccccc-eeccccccccccch-hccccccc----ccccCcccccc
Confidence            9999999999998 455554 44778888888854322211 11223356778888 88887753    23334456888


Q ss_pred             ccCCCceEEEecCC
Q 046301          384 KEKLEALSLKWVNS  397 (404)
Q Consensus       384 l~~L~~L~l~~~~~  397 (404)
                      +++|+.|+|+.|.-
T Consensus       171 l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         171 LENLDTLLLQENSL  184 (266)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             ccccceeecccCCC
Confidence            99999999998863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.9e-11  Score=107.76  Aligned_cols=187  Identities=16%  Similarity=0.104  Sum_probs=131.9

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCcc------------------ccccccchhhhhhhccCcccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTR------------------KTFYVTNNLVFHVVPRLRQLR  259 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~L~  259 (404)
                      ++..++.|.+..+.+..+. ...+.+++.|+.|.+..+.-.                  ........+.+..|.++++|+
T Consensus        30 ip~~~~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~  108 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (284)
T ss_dssp             CCTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCEEECcCCcCCCCC-HHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCC
Confidence            4556777877777665433 234667777887777654311                  000112233355688899999


Q ss_pred             EEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc-cccccccccccC
Q 046301          260 VVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLA  337 (404)
Q Consensus       260 ~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~  337 (404)
                      +|++++|.+..++ ..+..+.+|+.+++++|.++.+|..    .+..+++|++|++++| .+..+|+ .+.++++|+.|.
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~----~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred             EEecCCcccccccccccchhcccchhhhccccccccChh----HhccccchhhcccccC-cccccchhhhccccccchhh
Confidence            9999999988664 4567788999999999999987754    5778899999999999 6777765 478899999985


Q ss_pred             ceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          338 KFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       338 ~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      +..+... ...+..+..+++|+ .|+++++.-    ....+..+.++.+|+.|+++.|.
T Consensus       184 l~~N~l~-~i~~~~f~~l~~L~-~L~l~~N~i----~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         184 LHQNRVA-HVHPHAFRDLGRLM-TLYLFANNL----SALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCSSCCC-EECTTTTTTCTTCC-EEECCSSCC----SCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hhhcccc-ccChhHhhhhhhcc-ccccccccc----ccccccccccccccCEEEecCCC
Confidence            5433222 22345678888898 899987543    23344557788999999998764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=2.6e-11  Score=93.67  Aligned_cols=81  Identities=23%  Similarity=0.262  Sum_probs=66.1

Q ss_pred             hccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccc--cccc
Q 046301          252 VPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPL--RIGK  329 (404)
Q Consensus       252 ~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~--~~~~  329 (404)
                      +.++.+|++|++++|.++.+|+.++.+++|+.|++++|.|+.+|      .+.++++|++|++++| .+..+|.  .++.
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~------~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~   88 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD------GVANLPRLQELLLCNN-RLQQSAAIQPLVS   88 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCSSCCEEECCSS-CCCSSSTTGGGGG
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC------ccccccccCeEECCCC-ccCCCCCchhhcC
Confidence            67788899999999999988888888999999999999888765      2888899999999888 6777763  4677


Q ss_pred             cccccccCce
Q 046301          330 LTSLRTLAKF  339 (404)
Q Consensus       330 l~~L~~L~~~  339 (404)
                      +++|++|++.
T Consensus        89 ~~~L~~L~l~   98 (124)
T d1dcea3          89 CPRLVLLNLQ   98 (124)
T ss_dssp             CTTCCEEECT
T ss_pred             CCCCCEEECC
Confidence            7778877543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=7e-11  Score=100.29  Aligned_cols=146  Identities=21%  Similarity=0.298  Sum_probs=110.1

Q ss_pred             CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCcc
Q 046301          223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPD  302 (404)
Q Consensus       223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~  302 (404)
                      .+..++.|.+..+.       ...+  ..+..+++|++|++++|.++.+++ ++.+++|++|++++|+++.+|      .
T Consensus        44 ~L~~L~~L~l~~~~-------i~~l--~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~------~  107 (210)
T d1h6ta2          44 ELNSIDQIIANNSD-------IKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS------S  107 (210)
T ss_dssp             HHHTCCEEECTTSC-------CCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG------G
T ss_pred             HhcCccEEECcCCC-------CCCc--hhHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc------c
Confidence            45677788776654       1111  136789999999999999998874 789999999999999999776      2


Q ss_pred             ccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhcccc
Q 046301          303 VGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  382 (404)
Q Consensus       303 ~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~  382 (404)
                      +.++++|+.|++++| ....++ .+..+++|+.+.+   ..+....+..+..+++|+ .+.+.++.- ..+.     .+.
T Consensus       108 l~~l~~L~~L~l~~~-~~~~~~-~l~~l~~l~~l~~---~~n~l~~~~~~~~l~~L~-~l~l~~n~l-~~i~-----~l~  175 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYL---GNNKITDITVLSRLTKLD-TLSLEDNQI-SDIV-----PLA  175 (210)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEEC---CSSCCCCCGGGGGCTTCS-EEECCSSCC-CCCG-----GGT
T ss_pred             ccccccccccccccc-cccccc-ccccccccccccc---cccccccccccccccccc-ccccccccc-cccc-----ccc
Confidence            889999999999998 566665 4777788887743   333333455677788888 888887643 3322     278


Q ss_pred             CccCCCceEEEecC
Q 046301          383 GKEKLEALSLKWVN  396 (404)
Q Consensus       383 ~l~~L~~L~l~~~~  396 (404)
                      ++++|+.|+++.|.
T Consensus       176 ~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         176 GLTKLQNLYLSKNH  189 (210)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCC
Confidence            89999999999885

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.14  E-value=2.8e-10  Score=97.72  Aligned_cols=169  Identities=19%  Similarity=0.252  Sum_probs=108.5

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKH  280 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~  280 (404)
                      +++.+.+..+.+.   .++++..+++|+.|.+.++.       .....  .+..++.|+++++++|.++.++ .+..+++
T Consensus        42 ~L~~L~l~~~~i~---~l~~l~~l~~L~~L~ls~n~-------i~~~~--~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~  108 (227)
T d1h6ua2          42 GITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQ-------ITDLA--PLKNLTKITELELSGNPLKNVS-AIAGLQS  108 (227)
T ss_dssp             TCCEEECTTSCCC---CCTTGGGCTTCCEEECCSSC-------CCCCG--GGTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred             CcCEEECCCCCCC---cchhHhcCCCCcEeecCCce-------eeccc--cccccccccccccccccccccc-ccccccc
Confidence            3455555544433   33455667777777776654       11111  2667777777777777776654 3666777


Q ss_pred             cceEecCCCCcccCCCC----------------CCCccccccccCceeecCCCCccccccccccccccccccCceEeccC
Q 046301          281 LRYLDFSHTAIEVLPES----------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKG  344 (404)
Q Consensus       281 L~~L~l~~~~l~~lp~~----------------~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~  344 (404)
                      |++++++++....++..                .....+.++++|++|++++| .+...+ .++++++|+.|++.++   
T Consensus       109 L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~Ls~n---  183 (227)
T d1h6ua2         109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLT-PLANLSKLTTLKADDN---  183 (227)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS---
T ss_pred             ccccccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccc-ccccch-hhcccccceecccCCC---
Confidence            77777777654433221                11224678888999999888 555554 3788889999965433   


Q ss_pred             CcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEe
Q 046301          345 NCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW  394 (404)
Q Consensus       345 ~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  394 (404)
                      ....+..+.++++|+ .|.+.++. +..++     .+.++++|+.|+++.
T Consensus       184 ~l~~l~~l~~l~~L~-~L~Ls~N~-lt~i~-----~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         184 KISDISPLASLPNLI-EVHLKNNQ-ISDVS-----PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCCGGGGGCTTCC-EEECTTSC-CCBCG-----GGTTCTTCCEEEEEE
T ss_pred             ccCCChhhcCCCCCC-EEECcCCc-CCCCc-----ccccCCCCCEEEeeC
Confidence            333456688888999 89998863 44432     277889999999863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.12  E-value=6.2e-11  Score=107.06  Aligned_cols=107  Identities=19%  Similarity=0.199  Sum_probs=50.0

Q ss_pred             CcceEEEEeccCcccc-ccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccC
Q 046301          201 NLRHLSYLTSQFDGIK-RFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAEL  278 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~-~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L  278 (404)
                      +++.+.+......... ....+.++++|++|.+..+.      ...+..+..|.++++|++|++++|.+..+ |..+..+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N------~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~  124 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET------TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccc------ccccccccccccccccchhhhccccccccccccccch
Confidence            3455555554443321 22455566666666665421      01112334456666666666666655532 3334455


Q ss_pred             CCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301          279 KHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       279 ~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~  317 (404)
                      .+|+++++++|.+..    .+|..++++++|+++++++|
T Consensus       125 ~~L~~l~l~~N~~~~----~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_         125 KTLVTLDFSYNALSG----TLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             TTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSS
T ss_pred             hhhcccccccccccc----cCchhhccCcccceeecccc
Confidence            555555555554331    11223444444444444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=2e-10  Score=103.16  Aligned_cols=69  Identities=14%  Similarity=0.222  Sum_probs=47.1

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPND  274 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~  274 (404)
                      ++.+++.|.+..+.+..+.. ..+.+++.|+.|.+..+.       ...+.+..|.+++.|++|++++|+++.+|..
T Consensus        29 l~~~l~~L~Ls~N~i~~l~~-~~f~~l~~L~~L~l~~n~-------~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~   97 (305)
T d1xkua_          29 LPPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNK-------ISKISPGAFAPLVKLERLYLSKNQLKELPEK   97 (305)
T ss_dssp             CCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSC-------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred             CCCCCCEEECcCCcCCCcCh-hHhhcccccccccccccc-------ccccchhhhhCCCccCEecccCCccCcCccc
Confidence            45678888887776655431 246677888888877665       3344456677888888888888877766643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=8.4e-11  Score=95.34  Aligned_cols=107  Identities=18%  Similarity=0.114  Sum_probs=75.0

Q ss_pred             ccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCC
Q 046301          219 EGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESK  298 (404)
Q Consensus       219 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~  298 (404)
                      +.+.+...+|.|.+.++.       ...+ +..+..+++|++|++++|.+..++ .+..+++|++|++++|.++.+|.. 
T Consensus        12 ~~~~n~~~lr~L~L~~n~-------I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~-   81 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYK-------IPVI-ENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEG-   81 (162)
T ss_dssp             CEEECTTSCEEEECTTSC-------CCSC-CCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSC-
T ss_pred             HhccCcCcCcEEECCCCC-------CCcc-CccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcc-
Confidence            344566677888877765       1122 234566788888888888888774 477888888888888888877643 


Q ss_pred             CCccccccccCceeecCCCCccccccc--cccccccccccCce
Q 046301          299 LFPDVGNLVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKF  339 (404)
Q Consensus       299 ~p~~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~~~  339 (404)
                         .+..+++|++|++++| .+..++.  .+..+++|++|.+.
T Consensus        82 ---~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~  120 (162)
T d1a9na_          82 ---LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCIL  120 (162)
T ss_dssp             ---HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECC
T ss_pred             ---ccccccccccceeccc-cccccccccccccccccchhhcC
Confidence               2456888888888888 6666653  46677777777544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.04  E-value=4.4e-12  Score=106.72  Aligned_cols=134  Identities=19%  Similarity=0.204  Sum_probs=94.4

Q ss_pred             hhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccccc
Q 046301          249 FHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIG  328 (404)
Q Consensus       249 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~  328 (404)
                      +..+..+++|+.|++++|.|+.++ .+..+++|++|++++|.|+.+|..     ...+++|++|++++| .+..++ .+.
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~-----~~~~~~L~~L~l~~N-~i~~l~-~~~  112 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENL-----DAVADTLEELWISYN-QIASLS-GIE  112 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSH-----HHHHHHCCEEECSEE-ECCCHH-HHH
T ss_pred             hhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccc-----ccccccccccccccc-cccccc-ccc
Confidence            345778889999999999998886 588899999999999988877642     556678999999988 677775 478


Q ss_pred             ccccccccCceEeccCCcCCccccccccccccceEEcCCCC------CCCHhHHHhccccCccCCCceE
Q 046301          329 KLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLEN------VNDAEDAKEAQLNGKEKLEALS  391 (404)
Q Consensus       329 ~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~------~~~~~~~~~~~l~~l~~L~~L~  391 (404)
                      ++++|++|++.++.......+..+..+++|+ .|.+.++.-      ...........+..+++|+.|+
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLE-DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCS-EEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccchhccccccccccCCCccc-eeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888999876655443322344577888888 888876421      0011111122255678888775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.00  E-value=1.5e-10  Score=104.46  Aligned_cols=85  Identities=15%  Similarity=0.186  Sum_probs=51.1

Q ss_pred             CCcceEEEEe-ccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCccccc
Q 046301          200 RNLRHLSYLT-SQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAE  277 (404)
Q Consensus       200 ~~~r~l~~~~-~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~  277 (404)
                      ..++.+.+.. +.+.+ ..+..+.++++|++|.+..+.       .....+..+..+..|++++++.|.+. .+|..++.
T Consensus        76 ~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~-------l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTN-------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             TTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEEC-------CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             cccccccccccccccc-ccccccccccccchhhhcccc-------ccccccccccchhhhcccccccccccccCchhhcc
Confidence            4677777764 44332 123456778888888887765       22333444556666666666666644 45666666


Q ss_pred             CCCcceEecCCCCcc
Q 046301          278 LKHLRYLDFSHTAIE  292 (404)
Q Consensus       278 L~~L~~L~l~~~~l~  292 (404)
                      +++|+++++++|.+.
T Consensus       148 l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         148 LPNLVGITFDGNRIS  162 (313)
T ss_dssp             CTTCCEEECCSSCCE
T ss_pred             Ccccceeeccccccc
Confidence            666666666666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.98  E-value=4.5e-10  Score=100.83  Aligned_cols=157  Identities=17%  Similarity=0.157  Sum_probs=104.6

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCC------
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPES------  297 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~------  297 (404)
                      +.++.|.+..+.       ...+++..|.++++|++|++++|.+..+ |..+..+++|++|++++|+++.+|..      
T Consensus        31 ~~l~~L~Ls~N~-------i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~  103 (305)
T d1xkua_          31 PDTALLDLQNNK-------ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ  103 (305)
T ss_dssp             TTCCEEECCSSC-------CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCC
T ss_pred             CCCCEEECcCCc-------CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhh
Confidence            678999988765       4455566799999999999999999977 55699999999999999999988865      


Q ss_pred             -------------------------------------CCCccccccccCceeecCCCCccccccc---------------
Q 046301          298 -------------------------------------KLFPDVGNLVNLRHLKDSHSNLLEEMPL---------------  325 (404)
Q Consensus       298 -------------------------------------~~p~~~~~l~~L~~L~l~~~~~l~~lp~---------------  325 (404)
                                                           ..+..+..+++|+.+++++| .+..+|.               
T Consensus       104 ~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~~~~L~~L~l~~n~  182 (305)
T d1xkua_         104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNK  182 (305)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSC
T ss_pred             hhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCcccCCccCEEECCCCc
Confidence                                                 22233445566666666655 3444443               


Q ss_pred             -------cccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          326 -------RIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       326 -------~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                             .+.+++.+++|.+..+... ......+..+++|+ .|.+.++. +..    ++..+.++++|+.|+|+.|.
T Consensus       183 ~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~-~L~L~~N~-L~~----lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         183 ITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLR-ELHLNNNK-LVK----VPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCC-EEECCSSC-CSS----CCTTTTTCSSCCEEECCSSC
T ss_pred             CCCCChhHhhcccccccccccccccc-ccccccccccccce-eeeccccc-ccc----cccccccccCCCEEECCCCc
Confidence                   3334444444422111110 11123355677777 88887753 222    34568888999999998875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=6.5e-10  Score=92.74  Aligned_cols=104  Identities=16%  Similarity=0.114  Sum_probs=66.4

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcccc-CcccccCCCcceEecCCCCcccCCCCCCCccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQL-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDV  303 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~  303 (404)
                      +.++.|.+.++.      .........|.++++|+.|++++|.+..+ +..+..+++|++|++++|+++.+|..    .|
T Consensus        29 ~~l~~L~Ls~N~------i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~----~F   98 (192)
T d1w8aa_          29 LHTTELLLNDNE------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK----MF   98 (192)
T ss_dssp             TTCSEEECCSCC------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS----SS
T ss_pred             CCCCEEEeCCCC------CcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHH----HH
Confidence            456666666554      12223344566777777777777777644 34566677777777777777766543    46


Q ss_pred             cccccCceeecCCCCcccccccc-ccccccccccCce
Q 046301          304 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKF  339 (404)
Q Consensus       304 ~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~  339 (404)
                      .++++|++|+|++| .+..+|+. +..+++|++|++.
T Consensus        99 ~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          99 LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECT
T ss_pred             hCCCcccccccCCc-cccccCHHHhcCCccccccccc
Confidence            67777777777777 56666554 6667777777443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=1.4e-09  Score=100.44  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=97.7

Q ss_pred             ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCC---
Q 046301          221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPES---  297 (404)
Q Consensus       221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~---  297 (404)
                      ...++.|+.|.+.++.       ....  ..+..+++|+.|++++|.+..+++ ++.+++|++|+++++.+..++..   
T Consensus       215 ~~~~~~L~~L~l~~n~-------l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~  284 (384)
T d2omza2         215 LGILTNLDELSLNGNQ-------LKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGL  284 (384)
T ss_dssp             GGGCTTCCEEECCSSC-------CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             ccccCCCCEEECCCCC-------CCCc--chhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCccccc
Confidence            3445666666665543       1111  235566667777777776665553 55666677777766665544321   


Q ss_pred             -------------CCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEE
Q 046301          298 -------------KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTI  364 (404)
Q Consensus       298 -------------~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l  364 (404)
                                   .-+..+..++++++|++++| .+..++. +..+++|++|++.++   ....++.+..+++|+ .|++
T Consensus       285 ~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n---~l~~l~~l~~l~~L~-~L~l  358 (384)
T d2omza2         285 TALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN---KVSDVSSLANLTNIN-WLSA  358 (384)
T ss_dssp             TTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS---CCCCCGGGGGCTTCC-EEEC
T ss_pred             cccccccccccccccccccchhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC---CCCCChhHcCCCCCC-EEEC
Confidence                         11234777888999999888 6777763 788888998855433   333456788888888 8888


Q ss_pred             cCCCCCCCHhHHHhccccCccCCCceEEEec
Q 046301          365 SGLENVNDAEDAKEAQLNGKEKLEALSLKWV  395 (404)
Q Consensus       365 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  395 (404)
                      .+++ +..+   .+  +.++++|+.|+|+.|
T Consensus       359 ~~N~-l~~l---~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         359 GHNQ-ISDL---TP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSC-CCBC---GG--GTTCTTCSEEECCCE
T ss_pred             CCCc-CCCC---hh--hccCCCCCEeeCCCC
Confidence            7753 2222   22  778889999988754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=4.1e-10  Score=94.01  Aligned_cols=106  Identities=14%  Similarity=0.171  Sum_probs=80.9

Q ss_pred             ccccEEEecCCCccc-c-CcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-cccccc
Q 046301          256 RQLRVVSLCGYKIVQ-L-PNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTS  332 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~-l-p~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~  332 (404)
                      +.+++|+|++|.|+. + +..+..+++|+.|++++|.+..++..    .+..+++|++|++++| .+..+|+. |.++++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~----~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~  103 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN----AFEGASHIQELQLGEN-KIKEISNKMFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSC-CCCEECSSSSTTCTT
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccc----ccccccccceeeeccc-cccccCHHHHhCCCc
Confidence            578999999999974 4 45568899999999999998877643    6888999999999999 78888765 888999


Q ss_pred             ccccCceEeccCCcCCccccccccccccceEEcCCC
Q 046301          333 LRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLE  368 (404)
Q Consensus       333 L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~  368 (404)
                      |++|++..+... ......|..+++|+ .|.+.+..
T Consensus       104 L~~L~L~~N~l~-~i~~~~f~~l~~L~-~l~L~~N~  137 (192)
T d1w8aa_         104 LKTLNLYDNQIS-CVMPGSFEHLNSLT-SLNLASNP  137 (192)
T ss_dssp             CCEEECCSSCCC-EECTTSSTTCTTCC-EEECTTCC
T ss_pred             ccccccCCcccc-ccCHHHhcCCcccc-cccccccc
Confidence            999966543322 11233477888888 88887654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=2.6e-09  Score=91.43  Aligned_cols=150  Identities=19%  Similarity=0.249  Sum_probs=104.9

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCC
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKL  299 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~  299 (404)
                      ...++.+|+.|.+.++.       ...+  +.+..+++|++|++++|.+..+++ +..+++|+++++++|.++.++    
T Consensus        36 ~~~~l~~L~~L~l~~~~-------i~~l--~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~----  101 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTG-------VTTI--EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS----  101 (227)
T ss_dssp             CHHHHHTCCEEECTTSC-------CCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG----
T ss_pred             CHHHcCCcCEEECCCCC-------CCcc--hhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc----
Confidence            34567788999888765       2222  247889999999999999987765 899999999999999988765    


Q ss_pred             CccccccccCceeecCCCCcccccc---------------------ccccccccccccCceEeccCCcCCcccccccccc
Q 046301          300 FPDVGNLVNLRHLKDSHSNLLEEMP---------------------LRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHL  358 (404)
Q Consensus       300 p~~~~~l~~L~~L~l~~~~~l~~lp---------------------~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L  358 (404)
                        .+..+++|+.+++++|. ...++                     ..+.+.++|+.|.+.   .+.......+.++++|
T Consensus       102 --~l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~---~n~~~~~~~l~~l~~L  175 (227)
T d1h6ua2         102 --AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG---NAQVSDLTPLANLSKL  175 (227)
T ss_dssp             --GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC---SSCCCCCGGGTTCTTC
T ss_pred             --ccccccccccccccccc-ccccchhccccchhhhhchhhhhchhhhhcccccccccccc---ccccccchhhcccccc
Confidence              37788889998888773 22221                     123444555555332   2222334457788888


Q ss_pred             ccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          359 QEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       359 ~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      + .|++.++. +.+++     .+.++++|+.|+|+.|.
T Consensus       176 ~-~L~Ls~n~-l~~l~-----~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         176 T-TLKADDNK-ISDIS-----PLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             C-EEECCSSC-CCCCG-----GGGGCTTCCEEECTTSC
T ss_pred             e-ecccCCCc-cCCCh-----hhcCCCCCCEEECcCCc
Confidence            8 88887763 34432     26788899999998775

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.4e-09  Score=94.94  Aligned_cols=136  Identities=22%  Similarity=0.214  Sum_probs=99.2

Q ss_pred             ccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCc-ccccCCCcceEecCCCCcccCCCC
Q 046301          219 EGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPN-DIAELKHLRYLDFSHTAIEVLPES  297 (404)
Q Consensus       219 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~  297 (404)
                      ..+.++++|+.|.+..+.       ........+..+.+|+.+++++|.++.+|+ .+..+.+|+.|++++|+++.+|..
T Consensus        99 ~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCG-------LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TTTTTCTTCCEEECTTSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             hhhcccccCCEEecCCcc-------cccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            356678889988887765       233345567778889999999999988764 467788899999999998877654


Q ss_pred             CCCccccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCC
Q 046301          298 KLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGL  367 (404)
Q Consensus       298 ~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~  367 (404)
                          .+.++++|+++++++|......|..|.++++|++|++..+... ......+..+.+|+ .|.+.+.
T Consensus       172 ----~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~-~L~l~~N  235 (284)
T d1ozna_         172 ----AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQ-YLRLNDN  235 (284)
T ss_dssp             ----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCC-EEECCSS
T ss_pred             ----hhccccccchhhhhhccccccChhHhhhhhhcccccccccccc-cccccccccccccC-EEEecCC
Confidence                5778899999999988444444677888888988866543322 22234577788888 8888764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=1.6e-08  Score=93.14  Aligned_cols=171  Identities=18%  Similarity=0.215  Sum_probs=110.0

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCC
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKH  280 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~  280 (404)
                      .++.+.+....+..   ++++..+++|+.|.+.++.       ...++  .+.++++|++|++++|.+..+++ ++.+++
T Consensus        45 ~l~~L~l~~~~I~~---l~gl~~L~nL~~L~Ls~N~-------l~~l~--~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~  111 (384)
T d2omza2          45 QVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQ-------LTDIT--PLKNLTKLVDILMNNNQIADITP-LANLTN  111 (384)
T ss_dssp             TCCEEECCSSCCCC---CTTGGGCTTCCEEECCSSC-------CCCCG--GGTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             CCCEEECCCCCCCC---ccccccCCCCCEEeCcCCc-------CCCCc--cccCCcccccccccccccccccc-cccccc
Confidence            46667766655543   4566778889999888765       22232  28888999999999999887764 888999


Q ss_pred             cceEecCCCCcccCCCC-----------------------------------------------------------CCCc
Q 046301          281 LRYLDFSHTAIEVLPES-----------------------------------------------------------KLFP  301 (404)
Q Consensus       281 L~~L~l~~~~l~~lp~~-----------------------------------------------------------~~p~  301 (404)
                      |+.|+++++.+..++..                                                           ..+.
T Consensus       112 L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (384)
T d2omza2         112 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS  191 (384)
T ss_dssp             CCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            99999988776644322                                                           2233


Q ss_pred             cccccccCceeecCCCCccccccccccccccccccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccc
Q 046301          302 DVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL  381 (404)
Q Consensus       302 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l  381 (404)
                      ....+++++.+++++| .+..+++ ++..++|++|.+.   .+....+..+..+++|+ .|.+.++.- ....     .+
T Consensus       192 ~~~~l~~~~~l~l~~n-~i~~~~~-~~~~~~L~~L~l~---~n~l~~~~~l~~l~~L~-~L~l~~n~l-~~~~-----~~  259 (384)
T d2omza2         192 VLAKLTNLESLIATNN-QISDITP-LGILTNLDELSLN---GNQLKDIGTLASLTNLT-DLDLANNQI-SNLA-----PL  259 (384)
T ss_dssp             GGGGCTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECC---SSCCCCCGGGGGCTTCS-EEECCSSCC-CCCG-----GG
T ss_pred             ccccccccceeeccCC-ccCCCCc-ccccCCCCEEECC---CCCCCCcchhhcccccc-hhccccCcc-CCCC-----cc
Confidence            4556777777777777 4555543 4555677777432   22233345566666777 777766432 2221     25


Q ss_pred             cCccCCCceEEEecC
Q 046301          382 NGKEKLEALSLKWVN  396 (404)
Q Consensus       382 ~~l~~L~~L~l~~~~  396 (404)
                      ..+++|+.|+++.+.
T Consensus       260 ~~~~~L~~L~l~~~~  274 (384)
T d2omza2         260 SGLTKLTELKLGANQ  274 (384)
T ss_dssp             TTCTTCSEEECCSSC
T ss_pred             cccccCCEeeccCcc
Confidence            566777777776554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.78  E-value=3.3e-10  Score=94.96  Aligned_cols=127  Identities=23%  Similarity=0.249  Sum_probs=98.2

Q ss_pred             ccccEEEecCC--CccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccccccccc
Q 046301          256 RQLRVVSLCGY--KIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL  333 (404)
Q Consensus       256 ~~L~~L~l~~~--~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L  333 (404)
                      ..++.+++++.  .++.+|..+..|++|++|++++|+|+.++ +     +..+++|++|++++| .+..+|.....+.+|
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~-----l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L   95 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S-----LSGMENLRILSLGRN-LIKKIENLDAVADTL   95 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-C-----HHHHTTCCEEECCEE-EECSCSSHHHHHHHC
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-c-----ccCCccccChhhccc-ccccccccccccccc
Confidence            34556666654  46788889999999999999999999875 3     999999999999999 788888656666789


Q ss_pred             cccCceEeccCCcCCccccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecC
Q 046301          334 RTLAKFVVGKGNCYGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVN  396 (404)
Q Consensus       334 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  396 (404)
                      ++|.+..+..   ..++.+..+++|+ .|.++++. +..+...  ..+..+++|+.|+++.|.
T Consensus        96 ~~L~l~~N~i---~~l~~~~~l~~L~-~L~L~~N~-i~~~~~~--~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          96 EELWISYNQI---ASLSGIEKLVNLR-VLYMSNNK-ITNWGEI--DKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             CEEECSEEEC---CCHHHHHHHHHSS-EEEESEEE-CCCHHHH--HHHTTTTTCSEEEECSSH
T ss_pred             cccccccccc---ccccccccccccc-ccccccch-hcccccc--ccccCCCccceeecCCCc
Confidence            9996655433   3456788899999 99998754 3344332  347889999999998763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.2e-09  Score=97.02  Aligned_cols=180  Identities=15%  Similarity=0.107  Sum_probs=91.2

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCC-ccc--cCccccc
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYK-IVQ--LPNDIAE  277 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~~~~  277 (404)
                      .++++.+....+.......-+..+++|+.|.+.++.       ........+..+++|++|+++++. ++.  +..-...
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-------l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-------CCcHHHHHHhcCCCCcCccccccccccccccchhhHH
Confidence            455665543332221111234567778888776654       223334456677788888887753 542  2333445


Q ss_pred             CCCcceEecCCC-CcccCCCCCCCccccc-cccCceeecCCCCc-cc--cccccccccccccccCceEeccCCcCCcccc
Q 046301          278 LKHLRYLDFSHT-AIEVLPESKLFPDVGN-LVNLRHLKDSHSNL-LE--EMPLRIGKLTSLRTLAKFVVGKGNCYGLKEL  352 (404)
Q Consensus       278 L~~L~~L~l~~~-~l~~lp~~~~p~~~~~-l~~L~~L~l~~~~~-l~--~lp~~~~~l~~L~~L~~~~~~~~~~~~~~~l  352 (404)
                      +++|++|++++| .+..-   .++..+.. .++|+.|++++|.. +.  .++.-..++++|++|++..+.......+..+
T Consensus       120 ~~~L~~L~ls~c~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEK---HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             CTTCCEEECCCCTTCCHH---HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             HHhccccccccccccccc---cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh
Confidence            677888888776 34310   00111222 24566666665521 11  1222233455666665443322222344555


Q ss_pred             ccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEe
Q 046301          353 RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW  394 (404)
Q Consensus       353 ~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  394 (404)
                      .++++|+ .|.+++|.++.   +.....+.++++|+.|+++.
T Consensus       197 ~~~~~L~-~L~L~~C~~i~---~~~l~~L~~~~~L~~L~l~~  234 (284)
T d2astb2         197 FQLNYLQ-HLSLSRCYDII---PETLLELGEIPTLKTLQVFG  234 (284)
T ss_dssp             GGCTTCC-EEECTTCTTCC---GGGGGGGGGCTTCCEEECTT
T ss_pred             cccCcCC-EEECCCCCCCC---hHHHHHHhcCCCCCEEeeeC
Confidence            6666666 66666665443   22223355666677666643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.1e-09  Score=95.39  Aligned_cols=162  Identities=16%  Similarity=0.123  Sum_probs=110.8

Q ss_pred             CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCcc-ccCcccccCCCcceEecCCC-CcccCCCCCCC
Q 046301          223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIV-QLPNDIAELKHLRYLDFSHT-AIEVLPESKLF  300 (404)
Q Consensus       223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~L~~L~~L~l~~~-~l~~lp~~~~p  300 (404)
                      ....|+.|.+.++.      .....+...+.++++|++|+++++.+. ..+..++.+++|++|++++| .++.-   .+.
T Consensus        44 ~~~~L~~LdLs~~~------i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~---~l~  114 (284)
T d2astb2          44 SPFRVQHMDLSNSV------IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---ALQ  114 (284)
T ss_dssp             CCBCCCEEECTTCE------ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---HHH
T ss_pred             cCCCCCEEECCCCc------cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc---ccc
Confidence            45678889887654      344555667889999999999999986 56778889999999999997 56521   111


Q ss_pred             ccccccccCceeecCCCCcccc--cccccccc-ccccccCceEeccC-CcCCcccc-ccccccccceEEcCCCCCCCHhH
Q 046301          301 PDVGNLVNLRHLKDSHSNLLEE--MPLRIGKL-TSLRTLAKFVVGKG-NCYGLKEL-RSLMHLQEKLTISGLENVNDAED  375 (404)
Q Consensus       301 ~~~~~l~~L~~L~l~~~~~l~~--lp~~~~~l-~~L~~L~~~~~~~~-~~~~~~~l-~~L~~L~~~L~l~~~~~~~~~~~  375 (404)
                      .-..++++|++|++++|..+..  ++..+... ++|+.|.+..+... ....+..+ .++++|+ .|++.++..++   +
T Consensus       115 ~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~-~L~L~~~~~it---d  190 (284)
T d2astb2         115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV-HLDLSDSVMLK---N  190 (284)
T ss_dssp             HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS-EEECTTCTTCC---G
T ss_pred             hhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccc-ccccccccCCC---c
Confidence            1245789999999999865532  23333333 57888754432111 11122222 4677899 99998876654   3


Q ss_pred             HHhccccCccCCCceEEEecCC
Q 046301          376 AKEAQLNGKEKLEALSLKWVNS  397 (404)
Q Consensus       376 ~~~~~l~~l~~L~~L~l~~~~~  397 (404)
                      .....+.++++|+.|+++++..
T Consensus       191 ~~~~~l~~~~~L~~L~L~~C~~  212 (284)
T d2astb2         191 DCFQEFFQLNYLQHLSLSRCYD  212 (284)
T ss_dssp             GGGGGGGGCTTCCEEECTTCTT
T ss_pred             hhhhhhcccCcCCEEECCCCCC
Confidence            4455678899999999988654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=6.3e-08  Score=77.37  Aligned_cols=63  Identities=19%  Similarity=0.163  Sum_probs=29.8

Q ss_pred             hhhccCccccEEEecCCCccccC-cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301          250 HVVPRLRQLRVVSLCGYKIVQLP-NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       250 ~~~~~l~~L~~L~l~~~~~~~lp-~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~  317 (404)
                      ..|.++++|+.|++++|.+..++ ..+..+++|++|+|++|+|+.+|.+     +....+|++|++++|
T Consensus        50 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~-----~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK-----TVQGLSLQELVLSGN  113 (156)
T ss_dssp             GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST-----TTCSCCCCEEECCSS
T ss_pred             hhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChh-----hhccccccccccCCC
Confidence            34445555555555555555442 2244455555555555555544433     222334555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.2e-08  Score=80.10  Aligned_cols=85  Identities=20%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             hhhccCccccEEEecCCC-ccccCc-ccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccccccccc
Q 046301          250 HVVPRLRQLRVVSLCGYK-IVQLPN-DIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLRI  327 (404)
Q Consensus       250 ~~~~~l~~L~~L~l~~~~-~~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~  327 (404)
                      ..+..+++|+.|++.+++ ++.++. .+..+++|+.|++++|+|+.++..    .+..+++|++|+|++| .+..+|.++
T Consensus        25 ~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~Ls~N-~l~~l~~~~   99 (156)
T d2ifga3          25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD----AFHFTPRLSRLNLSFN-ALESLSWKT   99 (156)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT----GGGSCSCCCEEECCSS-CCSCCCSTT
T ss_pred             ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc----cccccccccceeccCC-CCcccChhh
Confidence            347788899999998775 888864 588999999999999999988654    6899999999999999 789999875


Q ss_pred             cccccccccCce
Q 046301          328 GKLTSLRTLAKF  339 (404)
Q Consensus       328 ~~l~~L~~L~~~  339 (404)
                      ....+|+.|++.
T Consensus       100 ~~~~~l~~L~L~  111 (156)
T d2ifga3         100 VQGLSLQELVLS  111 (156)
T ss_dssp             TCSCCCCEEECC
T ss_pred             hccccccccccC
Confidence            555578888554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.6e-08  Score=82.73  Aligned_cols=187  Identities=19%  Similarity=0.156  Sum_probs=100.1

Q ss_pred             cCCCcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecC-CCcccc-Cccc
Q 046301          198 FSRNLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCG-YKIVQL-PNDI  275 (404)
Q Consensus       198 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l-p~~~  275 (404)
                      ++.+++.+.+..+.+..+. ...+.++++|+.|.+..+.      ....+....|.+++.++.+.+.. +.+..+ +..+
T Consensus        27 l~~~l~~L~Ls~n~i~~l~-~~~f~~l~~L~~L~ls~n~------~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          27 LPRNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQND------VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCSCCSEEEEESCCCCEEC-TTTTTTCTTCCEEEEESCT------TCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CCCCCCEEECcCCcCCccC-hhHhhccchhhhhhhcccc------ccceeeccccccccccccccccccccccccccccc
Confidence            4557788888877665433 1346778888888887765      12223344566777777776654 445433 3446


Q ss_pred             ccCCCcceEecCCCCcccCCCC--------------------CCC-cccccc-ccCceeecCCCCccccccccccccccc
Q 046301          276 AELKHLRYLDFSHTAIEVLPES--------------------KLF-PDVGNL-VNLRHLKDSHSNLLEEMPLRIGKLTSL  333 (404)
Q Consensus       276 ~~L~~L~~L~l~~~~l~~lp~~--------------------~~p-~~~~~l-~~L~~L~l~~~~~l~~lp~~~~~l~~L  333 (404)
                      ..+++|+++++++|.+...+..                    .++ ..+..+ ..++.|++++| .+..++....+..++
T Consensus       100 ~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~~~~~~~~~l  178 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNCAFNGTQL  178 (242)
T ss_dssp             ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTTTTTCCE
T ss_pred             cccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccc-cccccccccccchhh
Confidence            7777777777777776655432                    000 112222 24555566555 455555544444444


Q ss_pred             cccCceEeccCCcCCc--cccccccccccceEEcCCCCCCCHhHHHhccccCccCCCceEEEecCCCC
Q 046301          334 RTLAKFVVGKGNCYGL--KELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWVNSTT  399 (404)
Q Consensus       334 ~~L~~~~~~~~~~~~~--~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  399 (404)
                      +.+..  ...+....+  ..+.++++|+ .|++++.. +..++   +..+.++++|+.|++..-+..|
T Consensus       179 ~~~~~--l~~n~l~~l~~~~f~~l~~L~-~L~Ls~N~-l~~l~---~~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         179 DELNL--SDNNNLEELPNDVFHGASGPV-ILDISRTR-IHSLP---SYGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             EEEEC--TTCTTCCCCCTTTTTTSCCCS-EEECTTSC-CCCCC---SSSCTTCCEEESSSEESSSCSC
T ss_pred             hcccc--ccccccccccHHHhcCCCCCC-EEECCCCc-CCccC---HHHHcCCcccccCcCCCCCcCC
Confidence            33311  111111122  2256677777 77776643 22221   2346666777776664434333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=9e-07  Score=75.75  Aligned_cols=52  Identities=23%  Similarity=0.170  Sum_probs=22.2

Q ss_pred             CcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-cccccccccc
Q 046301          280 HLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTL  336 (404)
Q Consensus       280 ~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L  336 (404)
                      .++.|++++|.++.++..     ..+.++++.+....+..++++|.. +.++++|++|
T Consensus       154 ~l~~L~l~~n~l~~i~~~-----~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L  206 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNC-----AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  206 (242)
T ss_dssp             SCEEEECCSSCCCEECTT-----TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred             cceeeecccccccccccc-----cccchhhhccccccccccccccHHHhcCCCCCCEE
Confidence            344455555544444332     333344433333222244444433 3444455554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.12  E-value=3.9e-06  Score=75.48  Aligned_cols=91  Identities=19%  Similarity=0.175  Sum_probs=68.8

Q ss_pred             CCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCcccc
Q 046301          225 EYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVG  304 (404)
Q Consensus       225 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~  304 (404)
                      .+++.|.+..++       ...++ +   ..++|++|++++|+++++|..+   .+|+.|++++|+++.++.  +|    
T Consensus        38 ~~l~~LdLs~~~-------L~~lp-~---~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~--lp----   97 (353)
T d1jl5a_          38 RQAHELELNNLG-------LSSLP-E---LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD--LP----   97 (353)
T ss_dssp             HTCSEEECTTSC-------CSCCC-S---CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS--CC----
T ss_pred             cCCCEEEeCCCC-------CCCCC-C---CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhh--hc----
Confidence            467788887665       12222 2   2468999999999999999764   578899999999887653  22    


Q ss_pred             ccccCceeecCCCCccccccccccccccccccCce
Q 046301          305 NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF  339 (404)
Q Consensus       305 ~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~~~  339 (404)
                        ++|++|++++| .+..+|. ++++++|++|++.
T Consensus        98 --~~L~~L~L~~n-~l~~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          98 --PLLEYLGVSNN-QLEKLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             --TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECC
T ss_pred             --ccccccccccc-ccccccc-hhhhccceeeccc
Confidence              46999999998 7889985 7889999999654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.12  E-value=7.3e-06  Score=73.61  Aligned_cols=61  Identities=23%  Similarity=0.320  Sum_probs=35.3

Q ss_pred             ccccEEEecCCCccccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc
Q 046301          256 RQLRVVSLCGYKIVQLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR  326 (404)
Q Consensus       256 ~~L~~L~l~~~~~~~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~  326 (404)
                      .+|+.|++.+|.++.++.-.   +.|++|++++|.+..+|.      ++++++|++|++++| .+...|..
T Consensus        78 ~~L~~L~l~~n~l~~l~~lp---~~L~~L~L~~n~l~~lp~------~~~l~~L~~L~l~~~-~~~~~~~~  138 (353)
T d1jl5a_          78 QSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLPE------LQNSSFLKIIDVDNN-SLKKLPDL  138 (353)
T ss_dssp             TTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCCC------CTTCTTCCEEECCSS-CCSCCCCC
T ss_pred             hhhhhhhhhhcccchhhhhc---cccccccccccccccccc------hhhhccceeeccccc-cccccccc
Confidence            45666666666665554311   346667777666665552      456666777766665 44444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.8e-06  Score=69.03  Aligned_cols=90  Identities=14%  Similarity=0.153  Sum_probs=64.9

Q ss_pred             hhhhhccCccccEEEecCCCccccC---cccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccc
Q 046301          248 VFHVVPRLRQLRVVSLCGYKIVQLP---NDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMP  324 (404)
Q Consensus       248 ~~~~~~~l~~L~~L~l~~~~~~~lp---~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp  324 (404)
                      ....+..++.|++|++++|.++.++   ..+..+++|++|++++|.|+.++.-    ......+|+.|++++|.......
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l----~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL----DKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH----HHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhh----hhhhccccceeecCCCCcCcCcc
Confidence            3445567899999999999998664   4577899999999999999987642    12344679999999984322222


Q ss_pred             -------ccccccccccccCceEe
Q 046301          325 -------LRIGKLTSLRTLAKFVV  341 (404)
Q Consensus       325 -------~~~~~l~~L~~L~~~~~  341 (404)
                             .-+..+++|+.|+...+
T Consensus       133 ~~~~y~~~i~~~~P~L~~LDg~~v  156 (162)
T d1koha1         133 DQSTYISAIRERFPKLLRLDGHEL  156 (162)
T ss_dssp             SHHHHHHHHHTTSTTCCEETTEEC
T ss_pred             cchhHHHHHHHHCCCCCEECcCCC
Confidence                   11556788888865443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.29  E-value=1.8e-05  Score=71.20  Aligned_cols=194  Identities=13%  Similarity=0.084  Sum_probs=110.0

Q ss_pred             CCcceEEEEeccCcccc--c-cccccCCCCccEEEecccCccccc--cc----cchhhhhhhccCccccEEEecCCCcc-
Q 046301          200 RNLRHLSYLTSQFDGIK--R-FEGLHKVEYLRTFLALLLGTRKTF--YV----TNNLVFHVVPRLRQLRVVSLCGYKIV-  269 (404)
Q Consensus       200 ~~~r~l~~~~~~~~~~~--~-~~~~~~~~~L~~L~~~~~~~~~~~--~~----~~~~~~~~~~~l~~L~~L~l~~~~~~-  269 (404)
                      ..++.+.+..+.+....  . ...+...+.|+.|.+.++.-....  ..    ............+.|+.|.+++|.+. 
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            35677777666544321  1 123345678888888765410000  00    00000111235678889999888765 


Q ss_pred             ----ccCcccccCCCcceEecCCCCcccCC-CCCCCccccccccCceeecCCCCccc-----cccccccccccccccCce
Q 046301          270 ----QLPNDIAELKHLRYLDFSHTAIEVLP-ESKLFPDVGNLVNLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKF  339 (404)
Q Consensus       270 ----~lp~~~~~L~~L~~L~l~~~~l~~lp-~~~~p~~~~~l~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~~~  339 (404)
                          .+...+...+.|+.|++++|.+..-. ...+...+...++|++|++++|. +.     .+...+...++|++|.+.
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhh
Confidence                23455667788999999999875310 00112347788999999999884 32     244556777888888554


Q ss_pred             EeccCC--cC-Ccccccc--ccccccceEEcCCCCCCC-HhHHHhcccc-CccCCCceEEEecC
Q 046301          340 VVGKGN--CY-GLKELRS--LMHLQEKLTISGLENVND-AEDAKEAQLN-GKEKLEALSLKWVN  396 (404)
Q Consensus       340 ~~~~~~--~~-~~~~l~~--L~~L~~~L~l~~~~~~~~-~~~~~~~~l~-~l~~L~~L~l~~~~  396 (404)
                      .+....  .. ....+..  ...|+ .|+++++. +.. -...+...+. ++++|+.|+|++|.
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~-~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQ-TLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCC-EEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cCccCchhhHHHHHHhhhccCCCCC-EEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            332211  00 1112222  24677 88888754 221 1223344453 56789999998775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.26  E-value=1.2e-05  Score=72.51  Aligned_cols=171  Identities=12%  Similarity=0.017  Sum_probs=95.5

Q ss_pred             ccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-----cCc---------ccccCCCcceEec
Q 046301          221 LHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPN---------DIAELKHLRYLDF  286 (404)
Q Consensus       221 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~---------~~~~L~~L~~L~l  286 (404)
                      +...++|+.|.+..+.-   ...........+...+.|+.|++++|.+..     +..         .....+.|+.+++
T Consensus        89 l~~~~~L~~L~L~~n~i---~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l  165 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAF---GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  165 (344)
T ss_dssp             HTTCTTCCEEECCSCCC---CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             HhhCCCccccccccccc---ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeec
Confidence            44567777777765541   011122234445667788888888776541     001         1134566788888


Q ss_pred             CCCCcccCCCCCCCccccccccCceeecCCCCcccc------ccccccccccccccCceEeccCC--cC-Cccccccccc
Q 046301          287 SHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEE------MPLRIGKLTSLRTLAKFVVGKGN--CY-GLKELRSLMH  357 (404)
Q Consensus       287 ~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~------lp~~~~~l~~L~~L~~~~~~~~~--~~-~~~~l~~L~~  357 (404)
                      ++|.+..---..+...+...++|++|+++.| .+..      +...+...++|+.|++..+....  +. ....+...++
T Consensus       166 ~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~  244 (344)
T d2ca6a1         166 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  244 (344)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             ccccccccccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhccccccccccccccccccccccccccc
Confidence            8776642111122233566788999999988 3332      33446677788888554322110  11 1134567778


Q ss_pred             cccceEEcCCCCCCCHhHHHhccccC--ccCCCceEEEecC
Q 046301          358 LQEKLTISGLENVNDAEDAKEAQLNG--KEKLEALSLKWVN  396 (404)
Q Consensus       358 L~~~L~l~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~  396 (404)
                      |+ .|.+.+|.-...-...+...+..  ...|+.|++++|.
T Consensus       245 L~-~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         245 LR-ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             CC-EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             ch-hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            88 88888765321112223333433  3579999998886

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=2.5e-05  Score=72.49  Aligned_cols=117  Identities=12%  Similarity=0.060  Sum_probs=78.8

Q ss_pred             CcceEEEEeccCccccccccccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-----cCccc
Q 046301          201 NLRHLSYLTSQFDGIKRFEGLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPNDI  275 (404)
Q Consensus       201 ~~r~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~  275 (404)
                      +++.+.+..+.+.......-++.++++++|.+.++.-   ...........+..+++|++|+|++|.+..     +...+
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i---~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL---TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC---CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCC---CHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            4566777777776644445567789999999987751   111122345567888999999999998852     23333


Q ss_pred             cc-CCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCccc
Q 046301          276 AE-LKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLE  321 (404)
Q Consensus       276 ~~-L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~  321 (404)
                      .. ..+|+.|++++|.+....-..++..+..+++|++|++++| .+.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccc-cch
Confidence            22 3479999999998864322223345778899999999998 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=8.3e-05  Score=68.83  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=18.2

Q ss_pred             cccEEEecCCCccc-----cCcccccCCCcceEecCCCCcc
Q 046301          257 QLRVVSLCGYKIVQ-----LPNDIAELKHLRYLDFSHTAIE  292 (404)
Q Consensus       257 ~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~~~l~  292 (404)
                      .|++|++++|.++.     ++..+..+++|++|++++|.+.
T Consensus        85 ~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          85 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            45555555555432     2334444555555555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=1.5e-05  Score=63.52  Aligned_cols=62  Identities=21%  Similarity=0.044  Sum_probs=43.7

Q ss_pred             cccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCCCcccccccc-ccccccccccCce
Q 046301          275 IAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKF  339 (404)
Q Consensus       275 ~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~~~  339 (404)
                      ...+++|++|+|++|+|+.++.  ++..+..+++|+.|++++| .+..+++- .....+|+.|.+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~--~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~  123 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLD  123 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSG--GGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCT
T ss_pred             HHhCCCCCEeeCCCccccCCch--hHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecC
Confidence            3568899999999999987652  2334678899999999998 77777652 2222356666443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.66  E-value=0.0007  Score=53.53  Aligned_cols=69  Identities=12%  Similarity=-0.007  Sum_probs=36.8

Q ss_pred             hhhhccCccccEEEecCC-Ccc-----ccCcccccCCCcceEecCCCCcccCCCCCCCccccccccCceeecCCC
Q 046301          249 FHVVPRLRQLRVVSLCGY-KIV-----QLPNDIAELKHLRYLDFSHTAIEVLPESKLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       249 ~~~~~~l~~L~~L~l~~~-~~~-----~lp~~~~~L~~L~~L~l~~~~l~~lp~~~~p~~~~~l~~L~~L~l~~~  317 (404)
                      .....+.+.|+.|+++++ .+.     .+-..+...++|+.|++++|.+..-....+-..+...++++.+++++|
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            334455677777777763 343     123445566677777777776542110011122445566666666665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.55  E-value=0.0064  Score=47.76  Aligned_cols=42  Identities=19%  Similarity=0.174  Sum_probs=20.9

Q ss_pred             hhccCccccEEEecCCCcc-----ccCcccccCCCcceEecCCCCcc
Q 046301          251 VVPRLRQLRVVSLCGYKIV-----QLPNDIAELKHLRYLDFSHTAIE  292 (404)
Q Consensus       251 ~~~~l~~L~~L~l~~~~~~-----~lp~~~~~L~~L~~L~l~~~~l~  292 (404)
                      .+...+.|+.|++++|.+.     .+...+...+.|+.|++++|.+.
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3445555666666665543     11223333455556666555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.38  E-value=0.0096  Score=46.57  Aligned_cols=93  Identities=12%  Similarity=-0.004  Sum_probs=57.6

Q ss_pred             CCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-----cCcccccCCCcceEecCCCCcccCCCC
Q 046301          223 KVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPNDIAELKHLRYLDFSHTAIEVLPES  297 (404)
Q Consensus       223 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~~~l~~lp~~  297 (404)
                      +.+.|+.|.+.+...  ............+...++|+.|++++|.+..     +-..+...+.++.+++++|.+..-.-.
T Consensus        15 ~~~~L~~L~L~~~~~--i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          15 NDPDLEEVNLNNIMN--IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TCTTCCEEECTTCTT--CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             cCCCCcEEEcCCCCC--CCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            457777787765321  1111222345566788999999999998752     334566778899999999876421100


Q ss_pred             CCCccccccccCceeecCCC
Q 046301          298 KLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       298 ~~p~~~~~l~~L~~L~l~~~  317 (404)
                      .+-..+...++|+.++++.+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCC
T ss_pred             HHHHHHHhCccccEEeeccC
Confidence            12233667788887776543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.33  E-value=0.034  Score=43.30  Aligned_cols=95  Identities=9%  Similarity=0.041  Sum_probs=61.6

Q ss_pred             cccCCCCccEEEecccCccccccccchhhhhhhccCccccEEEecCCCccc-----cCcccccCCCcceEecCCCCcccC
Q 046301          220 GLHKVEYLRTFLALLLGTRKTFYVTNNLVFHVVPRLRQLRVVSLCGYKIVQ-----LPNDIAELKHLRYLDFSHTAIEVL  294 (404)
Q Consensus       220 ~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~L~~L~~L~l~~~~l~~l  294 (404)
                      .+...+.|+.|.+.++.-   ...........+...+.|+.|++++|.+..     +-..+..-+.|+.|++++|.+..+
T Consensus        39 ~L~~n~~L~~L~Ls~n~l---~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAI---SDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHTTCSCCCEEECTTSCC---BHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHhhCCccceeecccccc---chhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCc
Confidence            456678899999887651   111123344566778999999999999863     334566667899999998866543


Q ss_pred             CCC---CCCccccccccCceeecCCC
Q 046301          295 PES---KLFPDVGNLVNLRHLKDSHS  317 (404)
Q Consensus       295 p~~---~~p~~~~~l~~L~~L~l~~~  317 (404)
                      -..   .+...+..-++|+.|+++.+
T Consensus       116 g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         116 GNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            211   12223445677777777665