Citrus Sinensis ID: 046336

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAPFTLVILMGLLLQipffihsqtyvlgrpfimtrSFIFTTAIMSIFAFVNGLlkdlpdvegdkafGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKvdldsfesQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR
Flexible Loop (DISEMBL)
MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR
Low Complexity Region (SEG)
MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLigyggaiiagsssssiisKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR
Disordered region (IsUnstruct)
***FTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFL*
Disordered Region (DISOPRED)
MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR
Disordered Region (DISEMBL)
MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR
Disordered Region (DISPRO)
MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	no	no	0.952	0.393	0.419	1e-33
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.952	0.404	0.419	1e-33
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.850	0.346	0.44	3e-30
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.940	0.383	0.366	5e-24
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.814	0.352	0.313	3e-10
Q0D576	379	Probable homogentisate ph	no	no	0.736	0.324	0.282	8e-07

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 109/167 (65%), Gaps = 8/167 (4%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A   ++ +  +++Q+ FF+H QT+V  RP + TR  IF TA M+ F+ V  L KD+PD+
Sbjct: 246 VAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDI 305

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAF 120
           EGD+ FG+++  V LG++KV  +CV L+ + Y  AI+ G++S+ + SK  T++GH+ILA 
Sbjct: 306 EGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAA 365

Query: 121 MVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           ++W RSR +DL S  +  SFYM++WK        L Y EY LI  +R
Sbjct: 366 ILWNRSRSIDLTSKTAITSFYMFIWK--------LFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 107/167 (64%), Gaps = 8/167 (4%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A   ++ +  +++QI F++H QT+V GRP + TR  IF TA MS F+ V  L KD+PD+
Sbjct: 235 VAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDI 294

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAF 120
           EGDK FG+++  V LG+++V   CV L+ + Y  AI+ G++S  I SK+++++GH ILA 
Sbjct: 295 EGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILAT 354

Query: 121 MVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
            +W R++ VDL S     S YM++WK        L Y EY L+ FL+
Sbjct: 355 TLWARAKSVDLSSKTEITSCYMFIWK--------LFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 98/150 (65%), Gaps = 8/150 (5%)

Query: 18  FFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 77
           FF+H QT V  RP    R  IF TAI+SI+A V  L KD+PD+EGD+ FG+Q+L + LG 
Sbjct: 269 FFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGP 328

Query: 78  EKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQ 137
           ++V  +CV+L+ + YG  I+ G++S  + SK++T++GH++LA ++W  ++ VDL S    
Sbjct: 329 KRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVL 388

Query: 138 FSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
            SFYM++WK        L+  EYFLI   R
Sbjct: 389 HSFYMFIWK--------LHTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  110 bits (274), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 95/169 (56%), Gaps = 12/169 (7%)

Query: 3   PFTLVILM----GLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLP 58
           PF   + M     L L I +F H QT VL RP    RS  F  A M+ ++    L KD+P
Sbjct: 249 PFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIP 308

Query: 59  DVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSIL 118
           DVEGDK  G+ +  V LG+++   +CV+   + +G  I+AG+S S   +K+ T +G+++L
Sbjct: 309 DVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCSHFWTKIFTGMGNAVL 368

Query: 119 AFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           A ++W +++ VDL    S  SFYM++WK        L Y  +FL+  +R
Sbjct: 369 ASILWYQAKSVDLSDKASTGSFYMFIWK--------LLYAGFFLMALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 14/150 (9%)

Query: 21  HSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 80
           H+    LG PF  +    F T+ +++FA V  + KDLPDVEGD+ F + TL   LG   +
Sbjct: 247 HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNI 306

Query: 81  LPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILA----FMVWLRSRKVDLDSFES 136
             L   L+L+ Y  AI        +    + I  H ILA    F  W+  +       E+
Sbjct: 307 AFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTK--EA 364

Query: 137 QFSFYMYLWKASDYSTSVLNYIEYFLIHFL 166
              +Y ++W         L Y EY L  FL
Sbjct: 365 ISGYYRFIWN--------LFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 21  HSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 80
           ++    LG  F  +    F T  +++FA V  + KDLPDVEGD+ + + TL   LG   +
Sbjct: 240 YATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNI 299

Query: 81  LPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILA----FMVW-LRSRKVDLDSFE 135
             L   L++  Y  AI           + V +  H+ LA    F  W L   K   D+  
Sbjct: 300 AFLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAIS 359

Query: 136 SQFSFYMYLWK 146
               +Y ++W 
Sbjct: 360 ---QYYRFIWN 367

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
224143266	284	predicted protein [Populus trichocarpa]	0.874	0.514	0.479	3e-36
219842170	411	homogentisate geranylgeranyl transferase	0.952	0.386	0.443	1e-34
295656253	401	homogentisate geranylgeranyl transferase	0.952	0.396	0.437	6e-34
147858275	406	hypothetical protein VITISV_043992 [Viti	0.952	0.391	0.419	6e-34
225446000	406	PREDICTED: homogentisate phytyltransfera	0.952	0.391	0.419	6e-34
56126261	406	homogentisate geranylgeranyl transferase	0.952	0.391	0.419	7e-34
302807704	302	hypothetical protein SELMODRAFT_34027 [S	0.892	0.493	0.458	1e-33
359476155	397	PREDICTED: probable homogentisate phytyl	0.952	0.400	0.437	2e-33
171190284	317	homogentisate geranylgeranyl transferase	0.952	0.501	0.473	4e-33
185487419	407	homogentisate phytyltransferase [Manihot	0.952	0.390	0.425	5e-33

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 108/146 (73%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A   ++I+  +++Q+ FF+H Q +VLG+  ++TRS +F TA M  F+ V  L KD+PDV
Sbjct: 139 LAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATAFMCFFSAVIALFKDIPDV 198

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAF 120
           +GD+ +G+Q+  V LG+E+V  LCVN++LI YG A++ G+SS+ + SK +TI+GH  LAF
Sbjct: 199 DGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASSTFLPSKFITILGHCTLAF 258

Query: 121 MVWLRSRKVDLDSFESQFSFYMYLWK 146
           ++WLR+R VDL S +S  SFYM++WK
Sbjct: 259 ILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 117/169 (69%), Gaps = 10/169 (5%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A   ++I+  +++Q+ FF+H Q +VLG+   + RS +F TA M  F+    L KD+PDV
Sbjct: 251 LAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPDV 310

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSS--IISKLVTIIGHSIL 118
           EGD+ +G+Q+  V LG+E+VL LCVN++L+ YG A++ G+SS S  +  KL+T+IGHS +
Sbjct: 311 EGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIGHSTI 370

Query: 119 AFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           A+++W++++ VDL S +S  SFYM++WK        L Y EYFLI F+R
Sbjct: 371 AWILWMKAQFVDLTSQKSITSFYMFIWK--------LFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  149 bits (375), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 8/167 (4%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A F+++++  + + + FF H Q YVLGRP +  RS  F T  +S+F  V  L KD+PDV
Sbjct: 243 LAAFSILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDV 302

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAF 120
           +GD+ FG+Q+  V LG+++V  LC+ ++LI Y  A++ G+SSS ++SKLVT+IGH  LA 
Sbjct: 303 DGDRDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKLVTVIGHCTLAS 362

Query: 121 MVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           ++W R+  V+L+   S  SFYM +WK        L Y EY LI F+R
Sbjct: 363 ILWRRANSVNLEDNSSMTSFYMSIWK--------LFYAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 113/167 (67%), Gaps = 8/167 (4%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A   ++ +  +++QI F++H QT+V GRP + +R  IF TA MS F+ V  L KD+PD+
Sbjct: 248 VAAMCILAVRAVIVQIAFYMHVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDI 307

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAF 120
           EGDK FG+++  V LG+++V  +C+ L+ + YG A+  G++SS + SKLVT++GH++LA 
Sbjct: 308 EGDKIFGIRSFSVRLGQKRVFWICILLLEMAYGAAVSVGATSSCLWSKLVTVLGHAVLAS 367

Query: 121 MVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           ++W R++ +DL S  +  SFYM++W+        L Y EYFLI  +R
Sbjct: 368 ILWTRAKSIDLKSKAAITSFYMFIWQ--------LFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446000|ref|XP_002267306.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic [Vitis vinifera] gi|297735423|emb|CBI17863.3| unnamed protein product [Vitis vinifera]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 113/167 (67%), Gaps = 8/167 (4%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A   ++ +  +++QI F++H QT+V GRP + +R  IF TA MS F+ V  L KD+PD+
Sbjct: 248 VAAMCILAVRAVIVQIAFYMHVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDI 307

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAF 120
           EGD+ FG+++  V LG+++V  +C+ L+ + YG A+  G++SS + SKLVT++GH++LA 
Sbjct: 308 EGDRIFGIRSFSVRLGQKRVFWICILLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLAS 367

Query: 121 MVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           ++W R++ VDL S  +  SFYM++W+        L Y EYFLI  +R
Sbjct: 368 ILWTRAKSVDLKSKAAITSFYMFIWQ--------LFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56126261|gb|AAV74623.1| homogentisate geranylgeranyl transferase [Vitis vinifera]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 113/167 (67%), Gaps = 8/167 (4%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A   ++ +  +++QI F++H QT+V GRP + +R  IF TA MS F+ V  L KD+PD+
Sbjct: 248 VAAMCILAVRAVIVQIAFYMHVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDI 307

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAF 120
           EGD+ FG+++  V LG+++V  +C+ L+ + YG A+  G++SS + SKLVT++GH++LA 
Sbjct: 308 EGDRIFGIRSFSVRLGQKRVFWICILLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLAS 367

Query: 121 MVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           ++W R++ VDL S  +  SFYM++W+        L Y EYFLI  +R
Sbjct: 368 ILWTRAKSVDLKSKAAITSFYMFIWQ--------LFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302807704|ref|XP_002985546.1| hypothetical protein SELMODRAFT_34027 [Selaginella moellendorffii] gi|302810665|ref|XP_002987023.1| hypothetical protein SELMODRAFT_34021 [Selaginella moellendorffii] gi|300145188|gb|EFJ11866.1| hypothetical protein SELMODRAFT_34021 [Selaginella moellendorffii] gi|300146752|gb|EFJ13420.1| hypothetical protein SELMODRAFT_34027 [Selaginella moellendorffii]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 102/157 (64%), Gaps = 8/157 (5%)

Query: 11  GLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQT 70
            +++Q+ FF+H Q +VL RP    RS +F TA M  F+ V  L KD+PDVEGD+ FG+Q+
Sbjct: 154 AIVVQLAFFLHMQAFVLKRPAFYPRSLLFATAFMCFFSVVIALFKDIPDVEGDQTFGIQS 213

Query: 71  LCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVD 130
             V LG+EKV  LC+ L+   Y  A+I G+ SS + SK+   +GHS++A ++W+RS+ VD
Sbjct: 214 FSVRLGQEKVFWLCIGLLEAAYASAVIFGAMSSCLWSKIAMTVGHSVIAAILWMRSQSVD 273

Query: 131 LDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           L S  +  SFYM++WK        L Y EYFLI F+R
Sbjct: 274 LSSKAAISSFYMFVWK--------LFYAEYFLIPFMR 302

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 8/167 (4%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A   ++I+  +++Q+ FF H Q +VLGR  + T+S +F  A M  F+ V  L KD+PDV
Sbjct: 239 LAASCILIVRAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDV 298

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAF 120
           +GD+ FG+Q+  V LG++KV  LCVN++L+ YG A + G+SSSS+  K  T+  H  LA 
Sbjct: 299 DGDREFGIQSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALAL 358

Query: 121 MVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           ++W+R++ VDL S E+  SFYM++WK        L Y EYFLI  +R
Sbjct: 359 VLWVRAQSVDLSSKEAVTSFYMFIWK--------LFYAEYFLIPLVR 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 112/167 (67%), Gaps = 8/167 (4%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A   +VI+  + +Q+  F H Q YVLGRP + +RS  F    M++F  V  L KD+PDV
Sbjct: 159 LAAMCIVIVRAITVQLTVFYHIQQYVLGRPVLFSRSLAFAIICMTLFVTVIALFKDIPDV 218

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAF 120
           +GD+ FG+QT+ V LGK++V  LC+ ++LI YG A++ GSSSS ++SKLVT+ GH ILA 
Sbjct: 219 DGDRDFGIQTITVTLGKKRVFWLCITILLIAYGSAVVIGSSSSLLLSKLVTVTGHCILAS 278

Query: 121 MVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           ++W R+  VDL+S +S  SFYM++WK        L Y EY LI F+R
Sbjct: 279 ILWSRAISVDLESNKSITSFYMFIWK--------LFYAEYLLIPFVR 317

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 110/167 (65%), Gaps = 8/167 (4%)

Query: 1   MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
           +A   ++ +  +++Q+ F++H QT+V GRP + +R  IF TA MS F+ V  L KD+PD+
Sbjct: 249 VAAMCILAVRAVIVQLAFYLHMQTHVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDI 308

Query: 61  EGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAF 120
           EGDK FG+++  V LG+E+V   C++L+ I YG AI+ G++SS   SK +T++GH+ILA 
Sbjct: 309 EGDKIFGIRSFTVRLGQERVFWTCISLLEIAYGVAILVGAASSHTWSKCITVLGHAILAS 368

Query: 121 MVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           ++W R++ VDL S  +  S YM++WK        L Y EY LI  +R
Sbjct: 369 ILWNRAKSVDLKSKAAITSCYMFIWK--------LFYAEYLLIPLVR 407

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.952	0.404	0.377	3.1e-28
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.850	0.346	0.4	4.6e-25
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.772	0.316	0.410	1.3e-23
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.928	0.394	0.292	2.5e-10

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 63/167 (37%), Positives = 96/167 (57%)

Query:     1 MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDV 60
             +A   ++ +  +++QI F++H QT+V GRP + TR  IF TA MS F+ V  L KD+PD+
Sbjct:   235 VAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDI 294

Query:    61 EGDKAFGMQTLCVLLGKEKVLPLCVNLMLXXXXXXXXXXXXXXXXXXKLVTIIGHSILAF 120
             EGDK FG+++  V LG+++V   CV L+                   K+++++GH ILA 
Sbjct:   295 EGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILAT 354

Query:   121 MVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
              +W R++ VDL S     S YM++WK        L Y EY L+ FL+
Sbjct:   355 TLWARAKSVDLSSKTEITSCYMFIWK--------LFYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 60/150 (40%), Positives = 87/150 (58%)

Query:    18 FFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 77
             FF+H QT V  RP    R  IF TAI+SI+A V  L KD+PD+EGD+ FG+Q+L + LG 
Sbjct:   269 FFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGP 328

Query:    78 EKVLPLCVNLMLXXXXXXXXXXXXXXXXXXKLVTIIGHSILAFMVWLRSRKVDLDSFESQ 137
             ++V  +CV+L+                   K++T++GH++LA ++W  ++ VDL S    
Sbjct:   329 KRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVL 388

Query:   138 FSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
              SFYM++WK        L+  EYFLI   R
Sbjct:   389 HSFYMFIWK--------LHTAEYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 272 (100.8 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 53/129 (41%), Positives = 78/129 (60%)

Query:    18 FFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 77
             FF+H QT V  RP    R  IF TAI+SI+A V  L KD+PD+EGD+ FG+Q+L + LG 
Sbjct:   266 FFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGP 325

Query:    78 EKVLPLCVNLMLXXXXXXXXXXXXXXXXXXKLVTIIGHSILAFMVWLRSRKVDLDSFESQ 137
             ++V  +CV+L+                   K++T++GH+ILA ++W  ++  DL S    
Sbjct:   326 KRVFWICVSLLEMAYGVTILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVL 385

Query:   138 FSFYMYLWK 146
              SFYM++WK
Sbjct:   386 QSFYMFIWK 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 50/171 (29%), Positives = 73/171 (42%)

Query:     1 MAPFTLVILM-GLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPD 59
             +A F ++  + G LL    + H+    LG PF  +    F T+ +++FA V  + KDLPD
Sbjct:   234 VAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPD 292

Query:    60 VEGDKAFGMQTLCVLLGKEKVLPLCVNLMLXXXXXXXXXXXXXXXXXXKLVTIIGHSILA 119
             VEGD+ F + TL   LG   +  L   L+L                    + I  H ILA
Sbjct:   293 VEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILA 352

Query:   120 ----FMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFL 166
                 F  W+   K +    E+   +Y ++W         L Y EY L  FL
Sbjct:   353 SGLIFQTWVLE-KANYTK-EAISGYYRFIWN--------LFYAEYLLFPFL 393


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.334   0.146   0.447    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      167       149   0.00078  104 3  11 21  0.46    30
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  133 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.98u 0.12s 13.10t   Elapsed:  00:00:01
  Total cpu time:  12.98u 0.12s 13.10t   Elapsed:  00:00:01
  Start:  Sat May 11 07:34:39 2013   End:  Sat May 11 07:34:40 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-51
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	6e-24
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	0.004

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  165 bits (420), Expect = 1e-51
 Identities = 76/166 (45%), Positives = 112/166 (67%), Gaps = 8/166 (4%)

Query: 2   APFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVE 61
           A   ++ +  +++Q+ FF+H QT+VLGRP + TR  IF TA M  F+ V  L KD+PDVE
Sbjct: 123 AASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVE 182

Query: 62  GDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFM 121
           GD+ FG+++  V LG+++V  LCVNL+ + Y  AI+ G+SSS + SK++T++GH ILA +
Sbjct: 183 GDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASI 242

Query: 122 VWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYFLIHFLR 167
           +W R++ VDL S  +  SFYM++WK        L Y EYFLI  +R
Sbjct: 243 LWQRAQSVDLSSKAAITSFYMFIWK--------LFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 94.7 bits (236), Expect = 6e-24
 Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 9/152 (5%)

Query: 11  GLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQT 70
           G+++ +  F+H Q  + G   I   +    T  + +F F   + KD+PD+EGD+ + + T
Sbjct: 159 GVIVNLGLFLHFQWLLGGSVLIPP-TVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITT 217

Query: 71  LCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVD 130
             + LGK+ V  L   ++   Y G I  G  S   ++    I+ H IL  ++W RS++VD
Sbjct: 218 FTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVD 277

Query: 131 LDSFESQFSFYMYLWKASDYSTSVLNYIEYFL 162
           L   ++   FY ++WK        L ++EY L
Sbjct: 278 LQDKQAIAQFYQFIWK--------LFFLEYLL 301

Length = 308

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 8   ILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFG 67
           +L  L   I    + Q  +     +     +F         F+  ++ D+ D+EGD+  G
Sbjct: 141 LLWALSPLILGVYYYQLTIFSLLLLY---AVFIFLKS----FIREIVFDIKDIEGDRKSG 193

Query: 68  MQTLCVLLGKEKVLPLCVNLMLI 90
           ++TL ++LGKE+ L   + L L+
Sbjct: 194 LKTLPIVLGKERTLKFLLILNLL 216

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12872	285	ubiA prenyltransferase; Reviewed	99.42
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.4
PRK13591	307	ubiA prenyltransferase; Provisional	99.33
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.31
PRK13105	282	ubiA prenyltransferase; Reviewed	99.26
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.2
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.18
PRK13595	292	ubiA prenyltransferase; Provisional	99.16
PRK12895	286	ubiA prenyltransferase; Reviewed	99.16
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.16
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.14
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.13
PRK12882	276	ubiA prenyltransferase; Reviewed	99.11
PRK12884	279	ubiA prenyltransferase; Reviewed	99.09
PRK13106	300	ubiA prenyltransferase; Reviewed	99.07
PRK05951	296	ubiA prenyltransferase; Reviewed	99.06
PLN00012	375	chlorophyll synthetase; Provisional	99.04
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.03
PRK12888	284	ubiA prenyltransferase; Reviewed	99.03
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.01
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.0
PRK12876	300	ubiA prenyltransferase; Reviewed	98.93
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	98.91
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	98.89
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.84
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	98.81
PRK12871	297	ubiA prenyltransferase; Reviewed	98.8
PRK12886	291	ubiA prenyltransferase; Reviewed	98.73
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	98.72
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	98.7
PRK12874	291	ubiA prenyltransferase; Reviewed	98.7
PRK12875	282	ubiA prenyltransferase; Reviewed	98.67
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	98.64
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	98.62
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	98.6
PRK13592	299	ubiA prenyltransferase; Provisional	98.57
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	98.57
PLN02922	315	prenyltransferase	98.5
PRK12873	294	ubiA prenyltransferase; Reviewed	98.34
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	97.96
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	97.78
PRK04375	296	protoheme IX farnesyltransferase; Provisional	97.58
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	97.15
PRK13362	306	protoheme IX farnesyltransferase; Provisional	96.77

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=1e-57  Score=393.46  Aligned_cols=159  Identities=48%  Similarity=0.878  Sum_probs=156.7

Q ss_pred             CcchHHHHHHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhH
Q 046336            1 MAPFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV   80 (167)
Q Consensus         1 ~Aa~cI~~vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~   80 (167)
                      +|++|+++|||+++|+|+|+|+|++++|+|..+|+++++.++|+++|+.+||++||+||+||||++|++|+|+++|+|++
T Consensus       122 ~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~  201 (280)
T PLN02878        122 AAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRV  201 (280)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCCCchhHHHHH
Q 046336           81 LPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEY  160 (167)
Q Consensus        81 ~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~sk~si~sFYmfIWk~~~~~~~~LFy~EY  160 (167)
                      +++|..++.+||++++++|++++..++|++|+.||++++++||+|+++||++||++++||||||||        |||+||
T Consensus       202 ~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~vD~~sk~~i~~fY~fiwk--------lfy~ey  273 (280)
T PLN02878        202 FWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFYMFIWK--------LFYAEY  273 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhcCcccHHHHHHHHHHHHH--------HHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999        999999


Q ss_pred             HhhhhcC
Q 046336          161 FLIHFLR  167 (167)
Q Consensus       161 ll~P~~r  167 (167)
                      +++|+.|
T Consensus       274 ~l~p~~~  280 (280)
T PLN02878        274 FLIPLVR  280 (280)
T ss_pred             HHHHhcC
Confidence            9999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=4.6e-45  Score=314.99  Aligned_cols=157  Identities=29%  Similarity=0.588  Sum_probs=150.5

Q ss_pred             cchHHHHHHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHH
Q 046336            2 APFTLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVL   81 (167)
Q Consensus         2 Aa~cI~~vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~   81 (167)
                      +.+|++.+||+++|+|+|.|++... +.+..+|+++++.++++.+++++++++||+||+||||+.|+||+|+++|+|++.
T Consensus       150 ~~~~i~~~~g~i~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~  228 (308)
T PRK12887        150 AALCIFTVRGVIVNLGLFLHFQWLL-GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVF  228 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHH
Confidence            4589999999999999999998764 447789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCCCchhHHHHHH
Q 046336           82 PLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWKASDYSTSVLNYIEYF  161 (167)
Q Consensus        82 ~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~sk~si~sFYmfIWk~~~~~~~~LFy~EYl  161 (167)
                      +++..++.++|+++++.|+.+...+++.+++.||++++..+|+|++++|++||+||+||||||||        |||+||+
T Consensus       229 ~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~--------l~~~ey~  300 (308)
T PRK12887        229 KLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK--------LFFLEYL  300 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH--------HHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999        9999999


Q ss_pred             hhhhcC
Q 046336          162 LIHFLR  167 (167)
Q Consensus       162 l~P~~r  167 (167)
                      ++|+.|
T Consensus       301 ~~~~~~  306 (308)
T PRK12887        301 LFPIAC  306 (308)
T ss_pred             HHHHHH
Confidence            999975

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.42  E-value=4.2e-12  Score=106.54  Aligned_cols=92  Identities=23%  Similarity=0.303  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHH
Q 046336            5 TLVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLC   84 (167)
Q Consensus         5 cI~~vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~   84 (167)
                      ++..+.|....++-+.+.+       ..++.+.+....++....+.++++||+||+||||+.|++|+|+++|+|++.+++
T Consensus       138 ~vg~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~  210 (285)
T PRK12872        138 VVSLLWALSPLILGVYYYQ-------LTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFL  210 (285)
T ss_pred             HHHHHHHHHHHHHHHHhcc-------cccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHH
Confidence            3444555555544433311       124566777778888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhch
Q 046336           85 VNLMLIGYGGAIIAGSSSS  103 (167)
Q Consensus        85 ~~ll~~~Y~~aI~~g~~~~  103 (167)
                      ..+....|+..+.......
T Consensus       211 ~~~~~~~~~~~~~~~~~~~  229 (285)
T PRK12872        211 LILNLLFLILLILGVYTGL  229 (285)
T ss_pred             HHHHHHHHHHHHHHHHHhH
Confidence            9999999988886655443

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.40  E-value=1.2e-11  Score=104.97  Aligned_cols=111  Identities=18%  Similarity=0.297  Sum_probs=93.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 046336           33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTI  112 (167)
Q Consensus        33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~  112 (167)
                      .+.+.+++..+..+.+.+.+++||+||+||||+.|++|+|+.+|+|++.+++.... .++.....+|.......  ..-.
T Consensus       165 ~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~~  241 (289)
T COG0382         165 LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLLG--LIYL  241 (289)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhch--HHHH
Confidence            67889999999999999999999999999999999999999999999999998777 55666655555544222  5677


Q ss_pred             HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcc
Q 046336          113 IGHSILAFMVWLRSRKVDLDSFESQFSFYMYLWK  146 (167)
Q Consensus       113 ~gH~ila~~lw~ra~~vdl~sk~si~sFYmfIWk  146 (167)
                      .++...+..+++|...+|.++++....++..-..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (289)
T COG0382         242 LGLLVAALLLLYQILIVDVRDPPACFALFDVNLL  275 (289)
T ss_pred             HHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhH
Confidence            8888999999999999999888888888777665

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.33  E-value=4e-12  Score=111.68  Aligned_cols=88  Identities=22%  Similarity=0.200  Sum_probs=72.8

Q ss_pred             HHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 046336           47 FAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRS  126 (167)
Q Consensus        47 Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra  126 (167)
                      ..++++++||++|+|||++.|.+|+|+++|++++.++...+...+|+..++.....--.+...+.+-+-.+-...+|+.+
T Consensus       191 ~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~  270 (307)
T PRK13591        191 KLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYS  270 (307)
T ss_pred             HHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHc
Confidence            33888899999999999999999999999999999999999999999888776665555556666666666777778777


Q ss_pred             hhcCCCCh
Q 046336          127 RKVDLDSF  134 (167)
Q Consensus       127 ~~vdl~sk  134 (167)
                      ++.|-+++
T Consensus       271 ~~~~~~~~  278 (307)
T PRK13591        271 SPFENEPS  278 (307)
T ss_pred             CCcccCcH
Confidence            77766655

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.31  E-value=5.7e-11  Score=102.48  Aligned_cols=125  Identities=18%  Similarity=0.115  Sum_probs=90.0

Q ss_pred             HHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHH
Q 046336            9 LMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLM   88 (167)
Q Consensus         9 vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll   88 (167)
                      +.|+..+++...+.. .+.|.+ . +.+...+.....+-+..-+++++.+|+|+||+.|++|+|+++|+|+..+++. +.
T Consensus       143 ~lg~~~~~~~l~g~~-av~g~~-~-~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~  218 (289)
T PLN02809        143 FLGLTFNWGALLGWA-AVKGSL-D-PAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FG  218 (289)
T ss_pred             HHHHHHHHHHHHHHH-HHhCCC-C-hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HH
Confidence            568888888877764 344422 1 1222212222222355677999999999999999999999999998888884 66


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHH
Q 046336           89 LIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLDSFESQFSF  140 (167)
Q Consensus        89 ~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~sk~si~sF  140 (167)
                      ..+|+....+|...  ..+.... .+|++.+..+++|.+.||++|+++..+.
T Consensus       219 ~~~~~~l~~~g~~~--~~~~~~~-~~~~~~~~~l~~~~~~v~~~~~~~~~~~  267 (289)
T PLN02809        219 AASIGGLALSGYNA--GLGWPYY-AGLAAAAGHLAWQIQTVDLSSRADCNRK  267 (289)
T ss_pred             HHHHHHHHHHHHHh--cCcHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            66788777777654  2334444 4899999999999999999999877554

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.26  E-value=8.6e-11  Score=101.60  Aligned_cols=68  Identities=16%  Similarity=0.241  Sum_probs=62.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046336           32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAG   99 (167)
Q Consensus        32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g   99 (167)
                      .++++.++....+.+++.+++++||+||+||||+.|.+|+|+++|+|++.+++..+..++|+..+..|
T Consensus       157 ~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        157 PFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667788888899999999999999999999999999999999999999999999999998888655

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.20  E-value=6.2e-10  Score=94.31  Aligned_cols=93  Identities=12%  Similarity=0.146  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 046336           44 MSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVW  123 (167)
Q Consensus        44 ~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw  123 (167)
                      ..+.+..++++||+||+|||++.|++|+|+++|+|++.++...+..+.+...++.|......   ..-..+..+.+..++
T Consensus       167 ~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g---~~y~~~~~~~~~~l~  243 (282)
T TIGR01475       167 VGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNG---YIALLALILIGLILA  243 (282)
T ss_pred             HHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCc---HHHHHHHHHHHHHHH
Confidence            34445677899999999999999999999999999999999888888888887777765432   233346666677788


Q ss_pred             HHHhhcCCCChhhHHH
Q 046336          124 LRSRKVDLDSFESQFS  139 (167)
Q Consensus       124 ~ra~~vdl~sk~si~s  139 (167)
                      ++.+.+|.+++++..+
T Consensus       244 ~~~~~~~~~~~~~~~~  259 (282)
T TIGR01475       244 YEHYIVDPGDQSKIQR  259 (282)
T ss_pred             HHHHHcCCCCHHHHHH
Confidence            8888999988876654

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.18  E-value=8.5e-10  Score=93.37  Aligned_cols=68  Identities=24%  Similarity=0.246  Sum_probs=57.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHh
Q 046336           33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGS  100 (167)
Q Consensus        33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~  100 (167)
                      ++.+.++...-+++++..++.+||++|+||||+.|.+|+|+++|+|++.+++..++.+.|...+....
T Consensus       159 ~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~  226 (283)
T TIGR01476       159 LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLL  226 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555566666777889999999999999999999999999999999999999999998877664333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.16  E-value=2e-10  Score=100.31  Aligned_cols=94  Identities=13%  Similarity=0.130  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 046336           43 IMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMV  122 (167)
Q Consensus        43 F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~l  122 (167)
                      ...+++.+++++||+||+||||+.|+||+|+++|+|++.++|..+..++=.....  ...+..   +.....-.+.+.-+
T Consensus       177 a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~--~~~~~~---~~~~~~~~~~~~~~  251 (292)
T PRK13595        177 ALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWP--VSRLTA---LALWLICGGMALAL  251 (292)
T ss_pred             HHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHH--hcchHH---HHHHHHHHHHHHHH
Confidence            3356779999999999999999999999999999999999997655543332221  112221   11222223333334


Q ss_pred             HHHHhhcCCCChhhHHHHHHHhcc
Q 046336          123 WLRSRKVDLDSFESQFSFYMYLWK  146 (167)
Q Consensus       123 w~ra~~vdl~sk~si~sFYmfIWk  146 (167)
                      |     -|.+..++=..+=.|+|-
T Consensus       252 ~-----~~~~~~~~~~~~~~~~~~  270 (292)
T PRK13595        252 W-----RRPTPETAHRLYPLSIVT  270 (292)
T ss_pred             h-----cCCCHHHHhccchHHHHH
Confidence            4     455555555556566774

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.16  E-value=1.1e-09  Score=94.96  Aligned_cols=99  Identities=18%  Similarity=0.155  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 046336           39 FTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSIL  118 (167)
Q Consensus        39 f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~il  118 (167)
                      .+-....+-+.+.++++|.+|+|+|++.|++|+|+++|+|+..+++..+...+-...++.|....   + ..-..|=.+.
T Consensus       163 ~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---~-~~y~~~~~~~  238 (286)
T PRK12895        163 IIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---T-LWYLAALIII  238 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---h-HHHHHHHHHH
Confidence            34444555667788999999999999999999999999999988876666666555556665442   2 3333566677


Q ss_pred             HHHHHHHHhhcCCCChhhH-HHHH
Q 046336          119 AFMVWLRSRKVDLDSFESQ-FSFY  141 (167)
Q Consensus       119 a~~lw~ra~~vdl~sk~si-~sFY  141 (167)
                      +..+.+|.+.+|.+|.++. ..|+
T Consensus       239 ~~~l~~q~~~~~~~~~~~~~~~~F  262 (286)
T PRK12895        239 YTLVIYQHLIIDPRNPINKRMSFF  262 (286)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHH
Confidence            7888889999999988877 5543

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.16  E-value=4.1e-10  Score=95.36  Aligned_cols=70  Identities=19%  Similarity=0.260  Sum_probs=64.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 046336           33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSS  102 (167)
Q Consensus        33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~  102 (167)
                      ++.+.++....+.+++..+.+.||++|+||||+.|++|+|+++|+|++.++...+..++|+..+......
T Consensus       166 ~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~  235 (293)
T PRK06080        166 VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG  235 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677888888999999999999999999999999999999999999999999999999999888776654

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.14  E-value=3.4e-10  Score=99.64  Aligned_cols=71  Identities=17%  Similarity=0.280  Sum_probs=59.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhch
Q 046336           33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSS  103 (167)
Q Consensus        33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~  103 (167)
                      ++.+.+...++..+.+.+++++||+||+|||++.|+||+|+++|+|++++++..++.+..+..+..|....
T Consensus       178 ~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~  248 (331)
T PRK12392        178 IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWG  248 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45566666777788889999999999999999999999999999999999998777677776666666554

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.13  E-value=2.3e-09  Score=86.51  Aligned_cols=49  Identities=29%  Similarity=0.438  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHH
Q 046336           34 TRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLP   82 (167)
Q Consensus        34 ~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~   82 (167)
                      +.+.+....+...+.+.+...+|++|+|||++.|.+|+|+++|+|++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  145 PPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            6777777788788999999999999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.11  E-value=1.4e-09  Score=91.68  Aligned_cols=92  Identities=20%  Similarity=0.266  Sum_probs=56.9

Q ss_pred             HHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHH
Q 046336           46 IFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLR  125 (167)
Q Consensus        46 ~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~r  125 (167)
                      +-.+.++++||+||+|||++.|++|+|+++|+|++.+++.......-..... +.. ....+....+..=...+..++..
T Consensus       168 l~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~-~~~-~~~~~~~y~~~~~~~~~~~l~~~  245 (276)
T PRK12882        168 LATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL-PYL-LSTFGLWYLVLVAPADLVMLAAA  245 (276)
T ss_pred             HHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHH-HHH-HHHhhHHHHHHHHHHHHHHHHHH
Confidence            3456889999999999999999999999999999999877665544433322 111 01112222222222223334444


Q ss_pred             HhhcCCCChhhHHH
Q 046336          126 SRKVDLDSFESQFS  139 (167)
Q Consensus       126 a~~vdl~sk~si~s  139 (167)
                      .+.+|.+++++..+
T Consensus       246 ~~~~~~~~~~~~~~  259 (276)
T PRK12882        246 YRSLKKTDPTASQK  259 (276)
T ss_pred             HHHHcCCCHHHHHH
Confidence            55666666654443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.09  E-value=1.4e-09  Score=91.42  Aligned_cols=66  Identities=23%  Similarity=0.350  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 046336           36 SFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSS  101 (167)
Q Consensus        36 ~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~  101 (167)
                      +.+....++.+.+...++.||++|+|||++.|++|+|+++|+|++.+++..+....++..++.+..
T Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~  221 (279)
T PRK12884        156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLF  221 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555556667778899999999999999999999999999999999988888887766554443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.07  E-value=3.5e-09  Score=92.09  Aligned_cols=102  Identities=14%  Similarity=0.135  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 046336           40 TTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILA  119 (167)
Q Consensus        40 ~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila  119 (167)
                      +.....+.+.+.+++||.||+|||++.|++|+|+++| |++..++..+...+-....+.|......  .... .+=.+.+
T Consensus       182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg--~~y~-~~~~~~~  257 (300)
T PRK13106        182 FVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLG--PIAI-AATILHG  257 (300)
T ss_pred             HHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHH-HHHHHHH
Confidence            3334556677899999999999999999999999999 8888888776666666666666544321  1111 2333555


Q ss_pred             HHHHHHHhhcCCCChhhHHHHHHHhcc
Q 046336          120 FMVWLRSRKVDLDSFESQFSFYMYLWK  146 (167)
Q Consensus       120 ~~lw~ra~~vdl~sk~si~sFYmfIWk  146 (167)
                      ..+.++.+.+|.+ ++--..|.+..|-
T Consensus       258 ~~l~~~~~~~~~~-~~~~~~F~~n~~i  283 (300)
T PRK13106        258 LIMAYAYYLASKK-GDFGRAFYYNIYS  283 (300)
T ss_pred             HHHHHHHHHhCCc-hHHHHHHHHccHH
Confidence            6666778888877 5566777666654

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.06  E-value=8e-09  Score=88.81  Aligned_cols=105  Identities=19%  Similarity=0.247  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 046336           38 IFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSI  117 (167)
Q Consensus        38 ~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~i  117 (167)
                      +....-..+.+..+-..++++|+|+||+.|.+|+|+++|+|++ ++-..+...+|+..+.........+......+++..
T Consensus       174 ~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~  252 (296)
T PRK05951        174 LLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLV  252 (296)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3333344455566678999999999999999999999999999 655566777888777666554333334556667766


Q ss_pred             HHHHHHHHHhhcCCCChhhHHHHHHH
Q 046336          118 LAFMVWLRSRKVDLDSFESQFSFYMY  143 (167)
Q Consensus       118 la~~lw~ra~~vdl~sk~si~sFYmf  143 (167)
                      ....+.++.++.|.++++...+.++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        253 AYALCLWQLRKFPPDPDEATVQLFML  278 (296)
T ss_pred             HHHHHHHHHhhCcccccHHHHHHHHH
Confidence            66667777777787777766666654

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.04  E-value=1.8e-09  Score=96.68  Aligned_cols=64  Identities=28%  Similarity=0.418  Sum_probs=54.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHH
Q 046336           33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAI   96 (167)
Q Consensus        33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI   96 (167)
                      ++.+.+....++.+.+.+++++||++|+|||++.|++|+|+++|+|++.+++..++.+.+...+
T Consensus       250 ~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~  313 (375)
T PLN00012        250 LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA  313 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence            4556667777888899999999999999999999999999999999999999876776655433

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.03  E-value=2.9e-09  Score=92.00  Aligned_cols=66  Identities=30%  Similarity=0.383  Sum_probs=56.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHH
Q 046336           32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAII   97 (167)
Q Consensus        32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~   97 (167)
                      .++...+.....+.+.+.+++++||++|+|||++.|.+|+|+++|+|++.+++..++...|...+.
T Consensus       180 ~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~  245 (306)
T TIGR02056       180 ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAA  245 (306)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHH
Confidence            345556666777778999999999999999999999999999999999999999888877765443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.03  E-value=3.3e-09  Score=91.19  Aligned_cols=109  Identities=13%  Similarity=0.068  Sum_probs=77.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 046336           34 TRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTII  113 (167)
Q Consensus        34 ~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~  113 (167)
                      +.+.++...-+.+.+...++++|++|.|+|++.|++|+|+++|+|++.+++..+..+.++...+.|......+--.   .
T Consensus       158 ~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~---~  234 (284)
T PRK12888        158 SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW---I  234 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---H
Confidence            3344444445556677788999999999999999999999999999998877776677666666666543322222   2


Q ss_pred             HHHHHHHHHHHHHhhcCCCChhhHH-HHH-HHhc
Q 046336          114 GHSILAFMVWLRSRKVDLDSFESQF-SFY-MYLW  145 (167)
Q Consensus       114 gH~ila~~lw~ra~~vdl~sk~si~-sFY-mfIW  145 (167)
                      +=.+.+..+.+|.+.+|.+|.+... .|+ +.-|
T Consensus       235 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~  268 (284)
T PRK12888        235 GLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGF  268 (284)
T ss_pred             HHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhH
Confidence            3346666777888899999877664 644 4443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.01  E-value=1.5e-08  Score=86.21  Aligned_cols=104  Identities=12%  Similarity=0.059  Sum_probs=71.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 046336           33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTI  112 (167)
Q Consensus        33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~  112 (167)
                      ++.+.++......+-+...++++|++|+|+|++.|++|+|+++|+|++.+++.......|+..++ +......   ...-
T Consensus       163 ~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~-~~~~~~~---~~~y  238 (285)
T PRK12847        163 LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL-GIISSLH---NIFY  238 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-HHHhcCc---HHHH
Confidence            34455555555566677778999999999999999999999999999999888777666665443 2222110   1111


Q ss_pred             HHHHHHHHHHHHHHhhcCCCChhhHHHH
Q 046336          113 IGHSILAFMVWLRSRKVDLDSFESQFSF  140 (167)
Q Consensus       113 ~gH~ila~~lw~ra~~vdl~sk~si~sF  140 (167)
                      .++++.+..++++.+.+|.+++++..+.
T Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~  266 (285)
T PRK12847        239 LAILAAAGIFYYQYKLLDFDNPANCMYA  266 (285)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            2444445677777788888877654433

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.00  E-value=2.2e-08  Score=84.78  Aligned_cols=56  Identities=20%  Similarity=0.214  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHH
Q 046336           40 TTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGA   95 (167)
Q Consensus        40 ~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~a   95 (167)
                      +.....+.++.++++||+||+|||++.|++|+|+++|+|++.+++...........
T Consensus       159 l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~  214 (279)
T PRK09573        159 LFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLS  214 (279)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHH
Confidence            33344455678999999999999999999999999999999998765555444433

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=98.93  E-value=5.2e-08  Score=85.43  Aligned_cols=115  Identities=12%  Similarity=0.203  Sum_probs=70.5

Q ss_pred             HHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHH-HHHHHHHHHHHHHHHHH
Q 046336           46 IFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIIS-KLVTIIGHSILAFMVWL  124 (167)
Q Consensus        46 ~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~-~~~~~~gH~ila~~lw~  124 (167)
                      +...+.+++++.+|+||||+.|++|+|+++|++++..++..+..+.-+..+++|......+. -...+.+.+ ....+.+
T Consensus       183 ~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~-~~l~~~~  261 (300)
T PRK12876        183 MIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLT-VILKTIK  261 (300)
T ss_pred             HHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-HHHHHHH
Confidence            33446789999999999999999999999999998777776666665555556655433221 111121222 2222345


Q ss_pred             HHhhcCCCChhhHHHHH-HHhcccCCCCCchhHHHHHHhhhhcC
Q 046336          125 RSRKVDLDSFESQFSFY-MYLWKASDYSTSVLNYIEYFLIHFLR  167 (167)
Q Consensus       125 ra~~vdl~sk~si~sFY-mfIWk~~~~~~~~LFy~EYll~P~~r  167 (167)
                      |.+.+|-++++.-..|+ +..|=      +.++++-.+.-|.+|
T Consensus       262 ~~~~~~~~~~~~~~~~F~~N~~i------g~~~~~~~~~~~~~~  299 (300)
T PRK12876        262 HYSLIDKKKSTLEQKFFLGNIYL------ALSFFVNMIGLFLLR  299 (300)
T ss_pred             HHHHcCCCchHHHHHHHHhcCHH------HHHHHHHHHHHHccC
Confidence            55666666555444444 33554      455566555555544

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=98.91  E-value=9.7e-09  Score=89.07  Aligned_cols=65  Identities=20%  Similarity=0.297  Sum_probs=56.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHH
Q 046336           32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAI   96 (167)
Q Consensus        32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI   96 (167)
                      .++...++...+..+.+..+..+||++|+||||+.|++|+|+++|+|++.+++..++.+.|+..+
T Consensus       186 ~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~  250 (314)
T PRK07566        186 LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI  250 (314)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence            34556666667777778889999999999999999999999999999999999888888888764

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=98.89  E-value=5.5e-08  Score=82.99  Aligned_cols=104  Identities=13%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 046336           34 TRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTII  113 (167)
Q Consensus        34 ~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~  113 (167)
                      +.+.+.......+.+...+++++++|+|+|++.|++|+|+++|+|+..+.+.......+.. .+.+....  .+.... .
T Consensus       159 ~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~y~-~  234 (281)
T TIGR01474       159 STAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLL-ALAGLIAG--LGPVYY-L  234 (281)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHH-HHHHHHhC--CcHHHH-H
Confidence            4444434444556677889999999999999999999999999998765544444333333 33343322  122222 2


Q ss_pred             HHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 046336          114 GHSILAFMVWLRSRKVDLDSFESQFSFY  141 (167)
Q Consensus       114 gH~ila~~lw~ra~~vdl~sk~si~sFY  141 (167)
                      +=.+.+..+.++...+|.+++++..+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F  262 (281)
T TIGR01474       235 GLAAAALLLIRQIATLDIRDPENCLKLF  262 (281)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            2334455555666777777666544443

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.84  E-value=4e-08  Score=84.50  Aligned_cols=109  Identities=15%  Similarity=0.106  Sum_probs=68.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 046336           34 TRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTII  113 (167)
Q Consensus        34 ~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~  113 (167)
                      +.+.+++...+.+.+...+++++++|+|+|++.|++|+|+++|+|+..+++.... +.-......|.....  +.... .
T Consensus       165 ~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~-~~~~~l~~~~~~~~~--~~~y~-~  240 (290)
T PRK12870        165 DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFA-LTVGFLAILGVLLEL--HLPFW-I  240 (290)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHH-HHHHHHHHHHHHhCC--cHHHH-H
Confidence            3444555555666678888999999999999999999999999999888776322 222223334443321  11111 2


Q ss_pred             HHHHHHHHHHHHHhhc--CCCChhhH-HHHHHHhcc
Q 046336          114 GHSILAFMVWLRSRKV--DLDSFESQ-FSFYMYLWK  146 (167)
Q Consensus       114 gH~ila~~lw~ra~~v--dl~sk~si-~sFYmfIWk  146 (167)
                      +=.+.+..+.++.+.+  |.+|++.- +-|.+-.|-
T Consensus       241 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~  276 (290)
T PRK12870        241 GLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWI  276 (290)
T ss_pred             HHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHH
Confidence            2224445555676777  87777655 445444443

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=98.81  E-value=6.2e-08  Score=81.83  Aligned_cols=43  Identities=30%  Similarity=0.539  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHH
Q 046336           45 SIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNL   87 (167)
Q Consensus        45 ~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~l   87 (167)
                      .+..+.+++.||++|+|||++.|++|+|+++|+|++.+++...
T Consensus       164 fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        164 FLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             HHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence            3445678899999999999999999999999999998876554

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=98.80  E-value=5.8e-08  Score=84.19  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 046336           38 IFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSI  117 (167)
Q Consensus        38 ~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~i  117 (167)
                      +..-.+..+-+..++.+||++|.|||++.|++|+|+++|++++.++...+..+.....+  |...  ..+.......=.+
T Consensus       178 ~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~--~~g~~~~~~~~~~  253 (297)
T PRK12871        178 LLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR--ELGPIALYGFLAG  253 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH--HhhHHHHHHHHHH
Confidence            33334445557888999999999999999999999999999888665544444443333  3222  2222222222244


Q ss_pred             HHHHHHHHHhhcCCCChhhH
Q 046336          118 LAFMVWLRSRKVDLDSFESQ  137 (167)
Q Consensus       118 la~~lw~ra~~vdl~sk~si  137 (167)
                      .+..+.+|.+..+-++|++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~  273 (297)
T PRK12871        254 FVLLAGANLYLWKEKSQDAG  273 (297)
T ss_pred             HHHHHHHHHHHhcCCCHHHH
Confidence            55556677777777777654

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=98.73  E-value=1.7e-07  Score=80.82  Aligned_cols=89  Identities=16%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             HHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 046336           48 AFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSR  127 (167)
Q Consensus        48 a~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~  127 (167)
                      ....+++++++|.|+|++.|++|+|+++|++++.+++.......+....+.+......  .... .+-.+.+..+.++.+
T Consensus       175 ~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~-~~~~~~~~~~l~~~~  251 (291)
T PRK12886        175 VAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLG--PWFL-AGLAVTGILLLYEHW  251 (291)
T ss_pred             HHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHH-HHHHHHHHHHHHHHH
Confidence            4557789999999999999999999999999999988776666666666555543211  1111 122233333335667


Q ss_pred             hcCCCC-hhhHHH
Q 046336          128 KVDLDS-FESQFS  139 (167)
Q Consensus       128 ~vdl~s-k~si~s  139 (167)
                      .++.+| +++-.+
T Consensus       252 ~~~~~~~~~~~~~  264 (291)
T PRK12886        252 LLRGGDLTRLDAA  264 (291)
T ss_pred             HhCCCChhHHHHH
Confidence            777776 334444

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=98.72  E-value=4.5e-07  Score=78.24  Aligned_cols=69  Identities=17%  Similarity=0.155  Sum_probs=57.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 046336           33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSS  101 (167)
Q Consensus        33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~  101 (167)
                      ++...+....-..+.+..+...|+++|+|+|++.|.+|+|+++|+|++.++-..++..+|...+.....
T Consensus       162 ~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~  230 (284)
T TIGR00751       162 VDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLA  230 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555556777889999999999999999999999999999999999999999999877665443

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=98.70  E-value=2e-07  Score=80.47  Aligned_cols=89  Identities=16%  Similarity=0.111  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHH
Q 046336            6 LVILMGLLLQIPFFIHSQTYVLGRPFIMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCV   85 (167)
Q Consensus         6 I~~vRg~ivnlg~f~H~q~~~~~~p~~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~   85 (167)
                      .+...|.+.-+|-| ..|+      ..++.+.+....-+.+.+..+-..++++|+|.|++.|.+|+|+++|+|++.++-.
T Consensus       139 v~l~~G~l~v~g~~-yvqt------~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~  211 (285)
T TIGR02235       139 CWLCFGPLAIAAAL-YAQS------QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVP  211 (285)
T ss_pred             HHHHHHHHHHHHHH-HHhC------CcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHH
Confidence            34455655555553 2343      2567777778888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 046336           86 NLMLIGYGGAIIAGSS  101 (167)
Q Consensus        86 ~ll~~~Y~~aI~~g~~  101 (167)
                      .++..+|+..+..-..
T Consensus       212 ~l~~~~y~~~i~~v~~  227 (285)
T TIGR02235       212 WVISLSYVVLLIAVIG  227 (285)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999977655443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=98.70  E-value=3.1e-07  Score=79.33  Aligned_cols=100  Identities=18%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 046336           38 IFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSI  117 (167)
Q Consensus        38 ~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~i  117 (167)
                      +++...+.+-+...+++++++|+|+|++.|++|+|+++|+|++.+++........+..+..|.....   ......+-.+
T Consensus       170 ~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  246 (291)
T PRK12874        170 VFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHL---GLFAYLGVIV  246 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHH
Confidence            3333444566677789999999999999999999999999998877654444444444443433221   1222344555


Q ss_pred             HHHHHHHHHhhcCCCChhhHHHH
Q 046336          118 LAFMVWLRSRKVDLDSFESQFSF  140 (167)
Q Consensus       118 la~~lw~ra~~vdl~sk~si~sF  140 (167)
                      .+..++++-+.++.+++++-..|
T Consensus       247 ~~~~l~~~~~~~~~~~~~~~~~f  269 (291)
T PRK12874        247 SALILLYEHYLVRKDFKKIDKAF  269 (291)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHH
Confidence            56666777777766555544443

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=98.67  E-value=5.8e-08  Score=83.86  Aligned_cols=65  Identities=18%  Similarity=0.361  Sum_probs=51.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHH
Q 046336           33 MTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAG   99 (167)
Q Consensus        33 ~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g   99 (167)
                      +|+..++...  .+.+.++.+++|++|+|+|++.|+||+|+++|+|++.+++......+-..-+.+|
T Consensus       165 ~~~~~l~~a~--~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        165 LPPLLAVAGG--WLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             CcHHHHHHHH--HHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4555555444  3778888999999999999999999999999999999888776666655555554

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=98.64  E-value=3.4e-07  Score=79.92  Aligned_cols=70  Identities=16%  Similarity=0.093  Sum_probs=62.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 046336           32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSS  101 (167)
Q Consensus        32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~  101 (167)
                      .++.+.+....-+.+.+..+-..+|++|+|.||+.|.+|+|+++|+|++.++-..+...+|+..+.....
T Consensus       171 ~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~  240 (304)
T PRK07419        171 SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL  240 (304)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777788888899999999999999999999999999999999999999999999987765554

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=98.62  E-value=5.7e-07  Score=78.54  Aligned_cols=95  Identities=14%  Similarity=0.076  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 046336           44 MSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVW  123 (167)
Q Consensus        44 ~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw  123 (167)
                      ..+-+...+.+++++|.|+|++.|++|+|+++|++++.++.......... ..+++......+--.+..   ..+...+.
T Consensus       201 ~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~---~~~~~~l~  276 (314)
T PRK12878        201 SIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLL-MGLAFWLAGVPLLALLGL---LAAAAHLA  276 (314)
T ss_pred             HHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHH-HHHHHHHhcCcHHHHHHH---HHHHHHHH
Confidence            33445566788999999999999999999999999998877544444433 233333222111112222   22333466


Q ss_pred             HHHhhcCCCChhhHHHHHH
Q 046336          124 LRSRKVDLDSFESQFSFYM  142 (167)
Q Consensus       124 ~ra~~vdl~sk~si~sFYm  142 (167)
                      ++-+++|.+++++-.++++
T Consensus       277 ~~~~~~~~~~~~~~~~~F~  295 (314)
T PRK12878        277 WQIARLDIDDPDQCLRLFK  295 (314)
T ss_pred             HHHHHcccCChHHHHHHHH
Confidence            7788888887776444443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=98.60  E-value=6.3e-07  Score=76.45  Aligned_cols=89  Identities=13%  Similarity=0.080  Sum_probs=56.1

Q ss_pred             HHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 046336           50 VNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKV  129 (167)
Q Consensus        50 ~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~v  129 (167)
                      ......+++|.|+|++.|++|+|+++|.|++.+++..... ........+.....  +... ..+=.+....+.++.+.+
T Consensus       177 ~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~y-~~~~~~~~~~~~~~~~~~  252 (282)
T PRK12848        177 AYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLA-TLALLAWAGWLLGL--GWAY-YWGLLVAAALFVYQQKLI  252 (282)
T ss_pred             HHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHH-HHHHHHHHHHHhcC--cHHH-HHHHHHHHHHHHHHHHHc
Confidence            4445566889999999999999999999998877643333 33333333433221  2221 233335556666778899


Q ss_pred             CCCChhhH-HHHHH
Q 046336          130 DLDSFESQ-FSFYM  142 (167)
Q Consensus       130 dl~sk~si-~sFYm  142 (167)
                      |.+++++. ..|++
T Consensus       253 ~~~~~~~~~~~F~~  266 (282)
T PRK12848        253 RDREREACFKAFLN  266 (282)
T ss_pred             CCCCHHHHHHHHHh
Confidence            98887654 33433

>PRK13592 ubiA prenyltransferase; Provisional

Probab=98.57  E-value=9.1e-08  Score=84.26  Aligned_cols=54  Identities=13%  Similarity=0.130  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHH
Q 046336           38 IFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYG   93 (167)
Q Consensus        38 ~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~   93 (167)
                      +.+.....+.++++||.||+|| |||++. .+|+|+++|.|++.+++..+..+..+
T Consensus       178 ~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~  231 (299)
T PRK13592        178 VLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDIL  231 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHH
Confidence            3445566778899999999999 899975 99999999999999999877665544

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=98.57  E-value=2.5e-07  Score=80.85  Aligned_cols=62  Identities=19%  Similarity=0.116  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhh
Q 046336           40 TTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSS  101 (167)
Q Consensus        40 ~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~  101 (167)
                      ...-+.+....+.+.||++|+|+||+.|.+|+|+++|+|++.++-..+...+|+..+..-..
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~  255 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLM  255 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556667789999999999999999999999999999999999999999876654443

>PLN02922 prenyltransferase

Probab=98.50  E-value=3.7e-06  Score=73.75  Aligned_cols=71  Identities=18%  Similarity=0.212  Sum_probs=62.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 046336           32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSS  102 (167)
Q Consensus        32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~  102 (167)
                      .++.+.+....=+.+.+..+-..++++|+|.||+.|.+|+|+++|+|++.++-..++..+|+..+...+..
T Consensus       185 ~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~  255 (315)
T PLN02922        185 PLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLK  255 (315)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35667777888888889999999999999999999999999999999999999999999999887665554

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=98.34  E-value=1.1e-05  Score=70.56  Aligned_cols=100  Identities=11%  Similarity=-0.038  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 046336           43 IMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMV  122 (167)
Q Consensus        43 F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~l  122 (167)
                      .+.+-+...+++++++|.|+|++.|++|+|++.|++ ...++..+-.+.-.....+|......  .... .+=++.+..+
T Consensus       178 ~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~--~~y~-~~~~~~~~~l  253 (294)
T PRK12873        178 ATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVG--FIFW-PFWLIASIGM  253 (294)
T ss_pred             HHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCc--HHHH-HHHHHHHHHH
Confidence            334445557799999999999999999999999975 44544444444444445556554321  1111 2334455666


Q ss_pred             HHHHhhcCCCC---hhhHHHHHHHhcc
Q 046336          123 WLRSRKVDLDS---FESQFSFYMYLWK  146 (167)
Q Consensus       123 w~ra~~vdl~s---k~si~sFYmfIWk  146 (167)
                      .++.+.+|.++   ++-..-|.+..|-
T Consensus       254 ~~~~~~~~~~~~~~~~c~~~F~~n~~~  280 (294)
T PRK12873        254 QRDILKLFPEKQSIKTIGNHFSNQVIL  280 (294)
T ss_pred             HHHHHHhCcCcccHHHHHHHHHhccHH
Confidence            67888898876   4455777776663

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=97.96  E-value=0.00011  Score=62.82  Aligned_cols=34  Identities=15%  Similarity=0.085  Sum_probs=27.8

Q ss_pred             cCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHH
Q 046336           56 DLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLML   89 (167)
Q Consensus        56 DieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~   89 (167)
                      +..|.|.|++.|++|+|+++|+|++.++...+..
T Consensus       180 ~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~  213 (279)
T PRK12869        180 ALKYREDYRRAGVPMLPAVVGEKTSVRAISISNA  213 (279)
T ss_pred             HHHhHHhHHHcCCeecceeecHHHHHHHHHHHHH
Confidence            5567788999999999999999999877654433

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=97.78  E-value=0.00038  Score=59.10  Aligned_cols=89  Identities=13%  Similarity=0.036  Sum_probs=49.6

Q ss_pred             cCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHhhcCCC-Ch
Q 046336           56 DLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIAGSSSSSIISKLVTIIGHSILAFMVWLRSRKVDLD-SF  134 (167)
Q Consensus        56 DieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~g~~~~~~~~~~~~~~gH~ila~~lw~ra~~vdl~-sk  134 (167)
                      ..+|.|.||+.|++|+|+++|.|++.+++.......-....+.+....  .+....+.+=.+.+..++++.+.+|.+ ++
T Consensus       179 a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~  256 (280)
T TIGR01473       179 ALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG--TGWLYLIVATLLGALFLYLAFKFYRDPTDR  256 (280)
T ss_pred             HHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            357888999999999999999999887665444433333333333221  112222222233344455555566555 33


Q ss_pred             -hhHHHHHHHhcc
Q 046336          135 -ESQFSFYMYLWK  146 (167)
Q Consensus       135 -~si~sFYmfIWk  146 (167)
                       ++-+.|..-.|-
T Consensus       257 ~~~~~~f~~s~~~  269 (280)
T TIGR01473       257 KKARKLFKFSLIY  269 (280)
T ss_pred             HHHHHHHHHHHHH
Confidence             234445444443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=97.58  E-value=0.00081  Score=57.92  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=26.3

Q ss_pred             hccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHH
Q 046336           54 LKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLI   90 (167)
Q Consensus        54 vKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~   90 (167)
                      +||.||   |++.|++|+|+++|.|++.+++.....+
T Consensus       189 ~~d~~D---~~~~G~~tlpv~~G~~~~~~~~~~~~~~  222 (296)
T PRK04375        189 IFRKDD---YAAAGIPMLPVVKGIRVTKRQILLYTVL  222 (296)
T ss_pred             HHHHhh---HHHcCCCccceeeCHHHHHHHHHHHHHH
Confidence            566555   6999999999999999988766544333

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=97.15  E-value=0.0051  Score=54.70  Aligned_cols=67  Identities=24%  Similarity=0.333  Sum_probs=55.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHHHHHHHHHHHHHHHH
Q 046336           32 IMTRSFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNLMLIGYGGAIIA   98 (167)
Q Consensus        32 ~~~~~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~~~ll~~~Y~~aI~~   98 (167)
                      .++........-..+-+..+...+.+-|+|=|++.|-+|+|+|+|+++....=..++..+|...++.
T Consensus       173 ~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~  239 (303)
T COG1575         173 RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIF  239 (303)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666677777889999999999999999999999999999999888988888877653

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=96.77  E-value=0.022  Score=49.81  Aligned_cols=49  Identities=14%  Similarity=0.106  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCchhhhhcCCcchhhhHhHHhHHHHH
Q 046336           36 SFIFTTAIMSIFAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLC   84 (167)
Q Consensus        36 ~~~f~t~F~~~Fa~~iaIvKDieDieGD~~~Gi~Tl~i~lG~~~~~~i~   84 (167)
                      ..+++..++.+-+......++++|.|+|++.|++|+|++.|+|++.+..
T Consensus       171 ~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~  219 (306)
T PRK13362        171 GALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI  219 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence            3333333333334444466788888889999999999999999888744

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00