Citrus Sinensis ID: 046354
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SY02 | 781 | Pentatricopeptide repeat- | yes | no | 0.958 | 0.626 | 0.342 | 1e-88 | |
| Q56XI1 | 705 | Pentatricopeptide repeat- | no | no | 0.966 | 0.699 | 0.347 | 3e-83 | |
| O64766 | 627 | Pentatricopeptide repeat- | no | no | 0.937 | 0.762 | 0.339 | 2e-80 | |
| Q9FXB9 | 704 | Pentatricopeptide repeat- | no | no | 0.947 | 0.686 | 0.330 | 3e-79 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.825 | 0.604 | 0.331 | 1e-71 | |
| Q9M4P3 | 656 | Pentatricopeptide repeat- | no | no | 0.870 | 0.676 | 0.329 | 8e-70 | |
| Q9FHF9 | 697 | Pentatricopeptide repeat- | no | no | 0.937 | 0.685 | 0.311 | 5e-68 | |
| O04590 | 656 | Pentatricopeptide repeat- | no | no | 0.894 | 0.695 | 0.319 | 3e-67 | |
| Q9LS72 | 600 | Pentatricopeptide repeat- | no | no | 0.798 | 0.678 | 0.337 | 9e-67 | |
| Q9C8L6 | 717 | Pentatricopeptide repeat- | no | no | 0.921 | 0.655 | 0.285 | 1e-64 |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 202/590 (34%), Positives = 303/590 (51%), Gaps = 101/590 (17%)
Query: 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
G+ + A KLFDEM + D VS MI ++RN +L KA LF MPE R++ + + M+
Sbjct: 108 NGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPE--RDVCSWNTMLS 165
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY------------FKARQ---------- 104
GY + G VD+AR VFD + E N SW +L+S Y FK+R+
Sbjct: 166 GYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCL 225
Query: 105 ---------VDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------EVIS 145
+ E R+ FD M +++VVSW T++ G A +G I + +V +
Sbjct: 226 LGGFVKKKKIVEARQFFDSM--NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT 283
Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
WT M +G +N M + ARE F +MP ++ V+WNAM+ YV M A ELF++MP RNV
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNV 343
Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLM---------------------FQSRFM------- 237
TWN MI YA+ G A L + M F++ +
Sbjct: 344 STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMERE 403
Query: 238 ---PNETTCTSILTSCEGMLENMLAHALAIRL---GFEQ-----ETSLTYKCTCHYVFWD 286
N ++ +S L++C ++ L L RL G+E L C C
Sbjct: 404 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG----- 458
Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
+ A F+ + KD+VSW MI YS HG G R F M + G KPD+ T
Sbjct: 459 -----SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513
Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
V VLS CSH GLV+KGR+ F M++ YG P ++HY+C+ D+L RAG +++A ++ M
Sbjct: 514 VAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM- 572
Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
P E D + G LLGA R+HG+ +A+ +++ ++P +SG YVL +N++A+ G W +
Sbjct: 573 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 632
Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
++R +M ++ VKKV +S IE++ K HT P ++ + L+E+D
Sbjct: 633 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELD 682
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 309 bits (792), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 183/526 (34%), Positives = 295/526 (56%), Gaps = 33/526 (6%)
Query: 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
G++ EA K+FD M + + VS +++ ++ N + AE+LF MPE +N V+ + M+
Sbjct: 92 NGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE--KNKVSWTVMLI 149
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
G+++ GR+D+A K+++ I + + + TS+I G K +VDE R +FD M ++V++WT
Sbjct: 150 GFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM--SERSVITWT 207
Query: 127 TVVLGCAHNGLI-----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175
T+V G N + K EV SWT+M G +N + A E F MP K ++
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMPEKTEV-SWTSMLMGYVQNGRIEDAEELFEVMPVKPVI 266
Query: 176 AWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235
A NAMI+ G +A+A +F+ M +RN +W +I + RNG E A+ L LM +
Sbjct: 267 ACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQG 326
Query: 236 FMPNETTCTSILTSCEGML---ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
P T SIL+ C + HA +R F+ + + Y+ +
Sbjct: 327 VRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCG-----E 381
Query: 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLS 351
+ ++L F+R +KD++ W ++I Y++HG G + ++F M SG TKP+E+TFV LS
Sbjct: 382 LVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLS 441
Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
CS+AG+VE+G K + M +G KP HY+C+ D+L RAG+ EAM ++ M E D
Sbjct: 442 ACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTV-EPD 500
Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
V G+LLGACR H + +A++ ++LIE++P +SG Y+L +N++A++G W + A++RK
Sbjct: 501 AAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKL 560
Query: 472 MERR-VKKVASFSQIEVKGKDHTLL------APMREMGYVVLKEVD 510
M+ R V+K S EV+ K H P +E +L E+D
Sbjct: 561 MKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELD 606
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 172/506 (33%), Positives = 283/506 (55%), Gaps = 28/506 (5%)
Query: 8 GKVKEATKLFDEM-SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
G ++EA +LFD + S+ + V+ +M++ +LR+ L AE LF+ MPE RN+V+ + MID
Sbjct: 91 GDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPE--RNVVSWNTMID 148
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
GY ++GR+D+A ++FDE+ E N+ SW S++ + ++DE LF+RMP + +VVSWT
Sbjct: 149 GYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR--DVVSWT 206
Query: 127 TVVLGCAHNGLI----------AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
+V G A NG + + +ISW M TG +N A + F MP +D +
Sbjct: 207 AMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFAS 266
Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-R 235
WN MIT ++ M +A LF+ MP++NV +W MI Y N A+ + + M +
Sbjct: 267 WNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGS 326
Query: 236 FMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
PN T SIL++C G++E H L + ++ +T Y +
Sbjct: 327 VKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMY-----SKSGE 381
Query: 293 VNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
+ +AR F+ + +D++SW +MI Y++HGHG + ++ +M K G KP +T++ +L
Sbjct: 382 LIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLL 441
Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
CSHAGLVEKG + F + R R EHY+CL D+ RAG++K+ ++
Sbjct: 442 FACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFIN-CDDARL 500
Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
GA+L AC +H +V +A + ++++E +G YVL +N++AA G+ +E A++R
Sbjct: 501 SRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRM 560
Query: 471 KM-ERRVKKVASFSQIEVKGKDHTLL 495
KM E+ +KK S ++V ++H +
Sbjct: 561 KMKEKGLKKQPGCSWVKVGKQNHLFV 586
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 177/536 (33%), Positives = 280/536 (52%), Gaps = 53/536 (9%)
Query: 1 TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA 60
S + G KEA +LFDEMS+ + VS +++ +++N + +A +F MPE RN+V+
Sbjct: 55 VSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPE--RNVVS 112
Query: 61 ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-- 118
+AM+ GY++ G V EA +F + E N SWT + G ++D+ R+L+D MP+K
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDV 172
Query: 119 ---------------------------LKNVVSWTTVVLGCAHNGLI-----------AK 140
+NVV+WTT++ G N + K
Sbjct: 173 VASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK 232
Query: 141 LEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM 200
EV SWT+M G + + A E+F MP K ++A NAMI + + G +++A +F+LM
Sbjct: 233 TEV-SWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLM 291
Query: 201 PQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NM 257
R+ TW MI Y R G E A+ L M + P+ + SIL+ C +
Sbjct: 292 EDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGR 351
Query: 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317
HA +R F+ + + YV ++ A+L F+R +KD++ W ++I
Sbjct: 352 QVHAHLVRCQFDDDVYVASVLMTMYVKCG-----ELVKAKLVFDRFSSKDIIMWNSIISG 406
Query: 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377
Y++HG G + ++F M SGT P+++T + +L+ CS+AG +E+G + F M + P
Sbjct: 407 YASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTP 466
Query: 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437
EHYSC D+L RAGQV +AM ++ M + D V GALLGAC+ H + +A+ ++
Sbjct: 467 TVEHYSCTVDMLGRAGQVDKAMELIESMTI-KPDATVWGALLGACKTHSRLDLAEVAAKK 525
Query: 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDH 492
L E +P ++G YVL ++++A+R +W + A VRK M V K S IEV K H
Sbjct: 526 LFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVH 581
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 155/468 (33%), Positives = 253/468 (54%), Gaps = 47/468 (10%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRM------ 115
SA++D Y K G V++A++VFDE+ + NV SW SLI+ + + E +F M
Sbjct: 191 SALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVE 250
Query: 116 --PLKLKNVVS----WTTVVLGCAHNGLIAKLE-----VISWTTMCTGLERNAMTKLARE 164
+ L +V+S + + +G +G + K + +I + + K AR
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARF 310
Query: 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAA 224
F MP ++++A +MI+ Y A + A +F M +RNV +WNA+I Y +NG A
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQET--------- 272
+ L L+ + P + +IL +C + E M AH ++ GF+ ++
Sbjct: 371 LSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVG 430
Query: 273 ----SLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328
+ KC C V L F ++ +D VSW AMI+ ++ +G+G +
Sbjct: 431 NSLIDMYVKCGC------------VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478
Query: 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388
LF ML+SG KPD IT +GVLS C HAG VE+GR F+ M+R +G P +HY+C+ D+
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538
Query: 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
L RAG ++EA ++ +M P + D V+ G+LL AC++H ++ + Y+ E+L+E++PS+SG
Sbjct: 539 LGRAGFLEEAKSMIEEM-PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGP 597
Query: 449 YVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTLL 495
YVL +N++A G+W++ VRK M + V K S I+++G DH +
Sbjct: 598 YVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFM 645
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 160/486 (32%), Positives = 256/486 (52%), Gaps = 42/486 (8%)
Query: 31 MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK-AGRVDEARKVFDEIYEGNV 89
+I +R+ D+ A +F M +N + ++++ G K R+ EA ++FDEI E +
Sbjct: 67 IIARCVRSGDIDGALRVFHGM--RAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124
Query: 90 YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-------- 141
+S+ ++S Y + ++ + FDRMP K + SW T++ G A G + K
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFK--DAASWNTMITGYARRGEMEKARELFYSMM 182
Query: 142 --EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNL 199
+SW M +G + A +F P + +VAW AMIT Y+ A + A +F
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKD 242
Query: 200 MP-QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENML 258
M +N+ TWNAMI Y N +KL M + PN + +S L C +
Sbjct: 243 MTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELS---- 298
Query: 259 AHALAIRLGFEQETSLTYKCTCHYV---------FWDWGFQLDVNSARLAFERLEAKDVV 309
A++LG + ++ C+ V + G ++ A FE ++ KDVV
Sbjct: 299 ----ALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCG---ELGDAWKLFEVMKKKDVV 351
Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
+W AMI Y+ HG+ + LF M+ + +PD ITFV VL C+HAGLV G F M
Sbjct: 352 AWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESM 411
Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGD 427
R Y +P+ +HY+C+ D+L RAG+++EA++++ MP PH V G LLGACR+H +
Sbjct: 412 VRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHA---AVFGTLLGACRVHKN 468
Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIE 486
V +A++ E+L++L ++ YV AN++A++ W++ A+VRK+M E V KV +S IE
Sbjct: 469 VELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIE 528
Query: 487 VKGKDH 492
++ K H
Sbjct: 529 IRNKVH 534
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 169/542 (31%), Positives = 276/542 (50%), Gaps = 64/542 (11%)
Query: 9 KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY 68
++ EA ++F+++ P MIT + R++ L A LF MP R++V+ ++MI G
Sbjct: 50 RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMP--VRDVVSWNSMISGC 107
Query: 69 VKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128
V+ G ++ A K+FDE+ E +V SWT++++G F++ +VD+ RLF +MP +K+ +W ++
Sbjct: 108 VECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMP--VKDTAAWNSM 165
Query: 129 VLGCAHNGLI---AKL-------EVISWTTMCTGLERNAMTKLAREYFVQM--------- 169
V G G + KL VISWTTM GL++N + A + F M
Sbjct: 166 VHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTS 225
Query: 170 -PNKDIVAWNA-----------------------------MITAYVDAGNMAQASELFNL 199
P ++ A +IT Y + + + ++F+
Sbjct: 226 RPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDE 285
Query: 200 MPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-N 256
V W A++ Y+ N A+ + + M ++ +PN++T S L SC G L+
Sbjct: 286 KVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWG 345
Query: 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316
H +A++LG E + + Y D G +VN A F ++ K +VSW ++I+
Sbjct: 346 KEMHGVAVKLGLETDAFVGNSLVVMYS--DSG---NVNDAVSVFIKIFKKSIVSWNSIIV 400
Query: 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376
+ HG G F +F +M++ +PDEITF G+LS CSH G +EKGRK F MS
Sbjct: 401 GCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHI 460
Query: 377 PRA-EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIG 435
R +HY+C+ DIL R G++KEA ++ +M + V L ALL ACR+H DV +
Sbjct: 461 DRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWL-ALLSACRMHSDVDRGEKAA 519
Query: 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKVASFSQIEVKGKDHTL 494
+ L SS AYVL +N++A+ G W +++R KM++ + K S + ++GK H
Sbjct: 520 AAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEF 579
Query: 495 LA 496
+
Sbjct: 580 FS 581
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 172/538 (31%), Positives = 262/538 (48%), Gaps = 82/538 (15%)
Query: 10 VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
++EA KLFDEM D S +MI+ + +N + +A LF MPE RN V+ SAMI G+
Sbjct: 121 LEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPE--RNAVSWSAMITGFC 178
Query: 70 KAGRVDEARKVFDEI-------------------------------------YEGNVYSW 92
+ G VD A +F ++ E VY++
Sbjct: 179 QNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAY 238
Query: 93 TSLISGYFKARQVDEGRRLFDRMP-------------LKLKNVVSWTTVVLGCAHNGLI- 138
+LI GY + QV+ R LFD++P KNVVSW +++ G +
Sbjct: 239 NTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVV 298
Query: 139 -AKL--------EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
A+L + ISW TM G + + A F +MPN+D +WN M++ Y GN
Sbjct: 299 SARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGN 358
Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
+ A F P+++ +WN++I Y +N A+ L M P+ T TS+L++
Sbjct: 359 VELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSA 418
Query: 250 CEGMLE---NMLAHALAIRLGFE----QETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302
G++ M H + ++ +T C ++ +R F+
Sbjct: 419 STGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCG----------EIMESRRIFDE 468
Query: 303 LEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361
++ K +V++W AMI Y+ HG+ + LF M +G P ITFV VL+ C+HAGLV++
Sbjct: 469 MKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDE 528
Query: 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421
+ F M Y +P+ EHYS L ++ GQ +EAM +++ M P E D V GALL A
Sbjct: 529 AKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSM-PFEPDKTVWGALLDA 587
Query: 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKK 478
CR++ +V +A E + L+P SS YVL N++A G WDE +QVR ME +R+KK
Sbjct: 588 CRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKK 645
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 150/444 (33%), Positives = 232/444 (52%), Gaps = 37/444 (8%)
Query: 57 NIVAESAMIDGYVKAGR--VDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDR 114
+I +A+ID Y + G V +A K+F+++ E + SW S++ G KA ++ + RRLFD
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDE 210
Query: 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174
MP + ++ISW TM G R A E F +MP ++
Sbjct: 211 MPQR-----------------------DLISWNTMLDGYARCREMSKAFELFEKMPERNT 247
Query: 175 VAWNAMITAYVDAGNMAQASELFNLMP--QRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
V+W+ M+ Y AG+M A +F+ MP +NV TW +I YA G A +L++ M
Sbjct: 248 VSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMV 307
Query: 233 QSRFMPNETTCTSILTSC--EGMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289
S + SIL +C G+L M H++ R + Y
Sbjct: 308 ASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCG--- 364
Query: 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349
++ A F + KD+VSW M+ HGHG + LF+RM + G +PD++TF+ V
Sbjct: 365 --NLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAV 422
Query: 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409
L C+HAGL+++G F M + Y P+ EHY CL D+L R G++KEA++VV M P E
Sbjct: 423 LCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTM-PME 481
Query: 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469
+ V+ GALLGACR+H +V +A + + L++L P G Y L +N++AA +W+ A +R
Sbjct: 482 PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIR 541
Query: 470 KKMERR-VKKVASFSQIEVKGKDH 492
KM+ V+K + S +E++ H
Sbjct: 542 SKMKSMGVEKPSGASSVELEDGIH 565
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 165/577 (28%), Positives = 274/577 (47%), Gaps = 107/577 (18%)
Query: 12 EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE---------- 61
+A +LF ++ + + VS A+MIT F+R +AE L+ P R+ VA
Sbjct: 131 KAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRA 190
Query: 62 ---------------------SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYF 100
S+M+ GY K GR+ +AR +FD + E NV +WT++I GYF
Sbjct: 191 GKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYF 250
Query: 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVL-------------GCAHNGLIAKL------ 141
KA ++G LF RM + V+ T+ + G +GL++++
Sbjct: 251 KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDL 310
Query: 142 -----------------------------EVISWTTMCTGLERNAMTKLAREYFVQMPNK 172
+ +SW ++ TGL + A E F +MP K
Sbjct: 311 FLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGK 370
Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232
D+V+W MI + G +++ ELF +MP+++ TW AMI + NG A+ + M
Sbjct: 371 DMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKML 430
Query: 233 QSRFMPNETTCTSILT---SCEGMLENMLAHALAIRLGFEQETSL-----TYKCTCHYVF 284
Q PN T +S+L+ S ++E + H +++ + S+ + C C
Sbjct: 431 QKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCG--- 487
Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
+ N A F + ++VS+ MI YS +G G + +LF+ + SG +P+ +
Sbjct: 488 -------NTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGV 540
Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
TF+ +LS C H G V+ G K F M +Y +P +HY+C+ D+L R+G + +A ++S
Sbjct: 541 TFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLIST 600
Query: 405 MP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG-- 460
MP PH V G+LL A + H V +A+ ++LIEL+P S+ YV+ + +++ G
Sbjct: 601 MPCKPHSG---VWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKN 657
Query: 461 -EWDEFAQVRKKMERRVKKVASFSQIEVKGKDHTLLA 496
+ D ++K +R+KK S I +KG+ H LA
Sbjct: 658 RDCDRIMNIKK--SKRIKKDPGSSWIILKGEVHNFLA 692
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | ||||||
| 297734691 | 674 | unnamed protein product [Vitis vinifera] | 0.980 | 0.741 | 0.559 | 1e-165 | |
| 255559617 | 656 | pentatricopeptide repeat-containing prot | 0.970 | 0.754 | 0.528 | 1e-164 | |
| 147861249 | 932 | hypothetical protein VITISV_018985 [Viti | 0.905 | 0.495 | 0.562 | 1e-154 | |
| 356532382 | 669 | PREDICTED: pentatricopeptide repeat-cont | 0.958 | 0.730 | 0.499 | 1e-149 | |
| 125550574 | 661 | hypothetical protein OsI_18181 [Oryza sa | 0.933 | 0.720 | 0.405 | 1e-108 | |
| 115461705 | 661 | Os05g0112900 [Oryza sativa Japonica Grou | 0.933 | 0.720 | 0.405 | 1e-107 | |
| 357114699 | 640 | PREDICTED: pentatricopeptide repeat-cont | 0.949 | 0.756 | 0.417 | 1e-100 | |
| 308044597 | 580 | uncharacterized protein LOC100501159 [Ze | 0.911 | 0.801 | 0.406 | 2e-98 | |
| 414873978 | 701 | TPA: hypothetical protein ZEAMMB73_89645 | 0.911 | 0.663 | 0.406 | 1e-97 | |
| 297809863 | 776 | pentatricopeptide repeat-containing prot | 0.958 | 0.630 | 0.337 | 2e-88 |
| >gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 326/583 (55%), Positives = 382/583 (65%), Gaps = 83/583 (14%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
SQ G G V+ A KLFDEM D VS +MIT +L+N++L KAE LF+ MP+ R IVAE
Sbjct: 77 SQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPD--RTIVAE 134
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQV---------------- 105
SAMIDGY KAG +D A+KVFD + + NV+SWTSLISGYF+ QV
Sbjct: 135 SAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVV 194
Query: 106 ---------------DEGRRLFDRMP-----------------------LKL------KN 121
D+ R +F++MP LKL +N
Sbjct: 195 SWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRN 254
Query: 122 VVSWTTVVLGCAHNG----------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN 171
+ SW T++ GC L+ +SWT M +GL RN TKLAREYF QMPN
Sbjct: 255 LYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPN 314
Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
KDI AWNAMITAYVD + +ASELFNLM +RN+ TWNAMID YAR+ P+G AMK L LM
Sbjct: 315 KDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHLILM 374
Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL 291
+S PNETT T ILTSC GMLE M AHALAI +G E ETSL+ Y
Sbjct: 375 LRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALITMYSRIG----- 429
Query: 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351
D++S+R+AFE L+AKDVVSWTAM+LA++ HGHG +F MLKSGTKPDEITFVGVLS
Sbjct: 430 DISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLS 489
Query: 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411
CSHAGLV+KG+K F+ MSRAYG +PRAEHYSCL DIL RAGQV EAM VV KMP ERD
Sbjct: 490 ACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECERD 549
Query: 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471
VLGALLGACRLHG+V MADYIG++LIELQP+SSG YVL ANV AARG WDEFA+VRKK
Sbjct: 550 GAVLGALLGACRLHGNVEMADYIGQKLIELQPNSSGGYVLLANVFAARGNWDEFAEVRKK 609
Query: 472 M-ERRVKKVASFSQIEVKGKDHTLLA-----PMREMGYVVLKE 508
M +R V+KV FSQIEVKGK H A P E Y +L+E
Sbjct: 610 MKDRNVRKVPGFSQIEVKGKCHAFFAGDKSHPQVEEIYELLRE 652
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 315/596 (52%), Positives = 387/596 (64%), Gaps = 101/596 (16%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
S G GKVKEA K+FDEM + D VS ASMITV+L+N DLP+AE LFR +PE RN+VA+
Sbjct: 59 SNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPE--RNVVAD 116
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL---------- 111
SAMI GYV+AGR+D+AR+VFD++ E NV+SWTSL+SGYFK VDE RL
Sbjct: 117 SAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVV 176
Query: 112 ---------------------FDRMPLK-----------------------------LKN 121
F++MP K +N
Sbjct: 177 SWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRN 236
Query: 122 VVSWTTVVLGCAH-----------NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP 170
+ SW ++ GC + N + + EV SWTT+ TGL RN M +LAR+YF MP
Sbjct: 237 LYSWNIMISGCINANRLNEAIQLFNSMPQRNEV-SWTTLVTGLARNGMMELARKYFDHMP 295
Query: 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230
KDI AWNAMITAYVD G+MA+AS LFNLMP++N+ +WNA+ID YARNGPE +++ L L
Sbjct: 296 TKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLIL 355
Query: 231 MFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290
M +S F PNETT TS+LT+C+ +LE M AH L I LGFEQ+ L Y
Sbjct: 356 MLRSNFKPNETTITSVLTACDSILELMQAHGLVIHLGFEQDKVLANGLVTTYSRCG---- 411
Query: 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
DV SAR F++LE KD+VSWTAMILAYSNHG G ++FARML+SG KPD ITFVG+L
Sbjct: 412 -DVLSARFIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLL 470
Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
S CSHAGLV+KG+ F+ MS AYG +PRAEHYSCL DIL RAG++ +AM+VVS+MPPHE
Sbjct: 471 SACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHEC 530
Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470
D VLGALLGACRLH DV +A++IGE+LIE +P+SSG+YVL AN +AA G+W+EFA+VRK
Sbjct: 531 DGAVLGALLGACRLHKDVGLANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRK 590
Query: 471 KM-ERRVKKVASFSQIEVKGKDHT---------------------LLAPMREMGYV 504
+M ER VKK FSQIEVKGK H LL MREMGY
Sbjct: 591 EMKERNVKKEPGFSQIEVKGKSHVFFVRDRSHPQLEEIYLFLDEKLLPLMREMGYT 646
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 304/540 (56%), Positives = 358/540 (66%), Gaps = 78/540 (14%)
Query: 20 MSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARK 79
M D VS +MIT +L+N++L KAE LF+ MP+ R IVAESAMIDGY KAG +D A+K
Sbjct: 1 MPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPD--RTIVAESAMIDGYAKAGLMDSAQK 58
Query: 80 VFDEIYEGNVYSWTSLISGYFKARQV-------------------------------DEG 108
VFD + + NV+SWTSLISGYF+ QV D+
Sbjct: 59 VFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQA 118
Query: 109 RRLFDRMP-----------------------LKL------KNVVSWTTVVLGCAHNG--- 136
R +F++MP LKL +N+ SW T++ GC
Sbjct: 119 RSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVN 178
Query: 137 -------LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGN 189
L+ +SWT M +GL RN TKLAREYF QMPNKDI AWNAMITAYVD
Sbjct: 179 EAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDECL 238
Query: 190 MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS 249
+ +ASELFNLM +RN+ TWNAMID YAR+ P+G AMK L LM +S PNETT T ILTS
Sbjct: 239 IVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTS 298
Query: 250 CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309
C GMLE M AHALAI +G E ETSL+ Y D++S+R+AFE L+AKDVV
Sbjct: 299 CWGMLELMQAHALAIVVGCECETSLSNALITMYSRIG-----DISSSRIAFESLKAKDVV 353
Query: 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
SWTAM+LA++ HGHG +F MLKSGTKPDEITFVGVLS CSHAGLV+KG+K F+ M
Sbjct: 354 SWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSM 413
Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
SRAYG +PRAEHYSCL DIL RAGQV EAM VV KMP ERD VLGALLGACRLHG+V
Sbjct: 414 SRAYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECERDGAVLGALLGACRLHGNVE 473
Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVK 488
MADYIG++LIELQP+SSG YVL ANV AARG WDEFA+VRKKM +R V+KV FSQIE +
Sbjct: 474 MADYIGQKLIELQPNSSGGYVLLANVFAARGNWDEFAEVRKKMKDRNVRKVPGFSQIEFQ 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09410-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 283/567 (49%), Positives = 359/567 (63%), Gaps = 78/567 (13%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
G GK+ EA KLFDEM Q D VS SMI V+L+N DL +AE +F+ MP QRN+VAESA
Sbjct: 75 LGRHGKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMP--QRNVVAESA 132
Query: 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP------- 116
MIDGY K GR+D+ARKVFD + + N +SWTSLISGYF +++E LFD+MP
Sbjct: 133 MIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMPERNVVSW 192
Query: 117 ----------------------LKLKNVVSWTTVVLGCAHNGLIAK-----LEV------ 143
+ KN+++WT +V NG ++ LE+
Sbjct: 193 TMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPERNVR 252
Query: 144 ------------------------------ISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
+SWT M +GL +N M +AR+YF MP KD
Sbjct: 253 SWNIMISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFDLMPYKD 312
Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
+ AW AMITA VD G M +A +LF+ +P++NV +WN MID YARN G A+ L LM +
Sbjct: 313 MAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNLFVLMLR 372
Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
S F PNETT TS++TSC+GM+E M AHA+ I LGFE T LT Y D+
Sbjct: 373 SCFRPNETTMTSVVTSCDGMVELMQAHAMVIHLGFEHNTWLTNALITLY-----SKSGDL 427
Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
SARL FE+L++KDVVSWTAMI+AYSNHGHG ++FARML SG KPDE+TFVG+LS C
Sbjct: 428 CSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSAC 487
Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
SH GLV +GR+ F+ + Y P+AEHYSCL DIL RAG V EAM VV+ +PP RD
Sbjct: 488 SHVGLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDEAMDVVATIPPSARDEA 547
Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM- 472
VL ALLGACRLHGDV +A+ IGE+L+EL+PSSSG YVL AN +AA G+WDEFA+VRK+M
Sbjct: 548 VLVALLGACRLHGDVAIANSIGEKLLELEPSSSGGYVLLANTYAAEGQWDEFAKVRKRMR 607
Query: 473 ERRVKKVASFSQIEVKGKDHTLLAPMR 499
ER VK++ +SQI++ GK+H + R
Sbjct: 608 ERNVKRIPGYSQIQITGKNHVFVVGER 634
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125550574|gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/553 (40%), Positives = 302/553 (54%), Gaps = 77/553 (13%)
Query: 16 LFDEMSQ-PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74
+FD M + D V+ A+M+ + L + DLP AEAL+RA P R I ++ M+DGYVKAG+V
Sbjct: 80 MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGYVKAGQV 139
Query: 75 DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP------------------ 116
D AR++FD + NV +WT ++SGY +A VDE RRLFD MP
Sbjct: 140 DRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNG 199
Query: 117 -----------LKLKNVVSWTTVVLGCAHNGLIAK-LE---------------------- 142
+ +NVV+WT +V NG I + LE
Sbjct: 200 MLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMS 259
Query: 143 ------------------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
V+SWT M TGL +N ARE+F +MP KDI AWN+MITAY
Sbjct: 260 AGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAY 319
Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
+ G + A LF++MP +N+ TWN +ID Y+ N + A++L LM +S P+ TT
Sbjct: 320 TNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLI 379
Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
S+L E +E H L+ +LG++ ET+L Y D++SA LAF RL
Sbjct: 380 SVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMY-----SRSGDLSSAWLAFRRLN 434
Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
KD ++WT+MI A +NHG + FA+ML+ G KP TF VLS C+H GLVEKGRK
Sbjct: 435 EKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRK 494
Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
F +S YG +P EHYSCL D+L RAG V+EA VV M D +LG LLG+C
Sbjct: 495 IFKSISHVYGLEPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLLGSCMT 554
Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFS 483
H +V + +GE L+++ PS SG Y L ANV A+ G W+E A V K M+ +VKK FS
Sbjct: 555 HNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWNEVASVWKIMKGSKVKKTPGFS 614
Query: 484 QIEVKGKDHTLLA 496
QIEV ++H +
Sbjct: 615 QIEVNARNHVFYS 627
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115461705|ref|NP_001054452.1| Os05g0112900 [Oryza sativa Japonica Group] gi|45680436|gb|AAS75237.1| unknown protein [Oryza sativa Japonica Group] gi|113578003|dbj|BAF16366.1| Os05g0112900 [Oryza sativa Japonica Group] gi|215715346|dbj|BAG95097.1| unnamed protein product [Oryza sativa Japonica Group] gi|215736909|dbj|BAG95838.1| unnamed protein product [Oryza sativa Japonica Group] gi|222629956|gb|EEE62088.1| hypothetical protein OsJ_16872 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/553 (40%), Positives = 301/553 (54%), Gaps = 77/553 (13%)
Query: 16 LFDEMSQ-PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74
+FD M + D V+ A+M+ + L + DLP AEAL+RA P R I ++ M+DGYVKAG+V
Sbjct: 80 MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGYVKAGQV 139
Query: 75 DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP------------------ 116
D AR++FD + NV +WT ++SGY +A VDE RRLFD MP
Sbjct: 140 DRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNG 199
Query: 117 -----------LKLKNVVSWTTVVLGCAHNGLIAK-LE---------------------- 142
+ +NVV+WT +V NG I + LE
Sbjct: 200 MLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMS 259
Query: 143 ------------------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
V+SWT M TGL +N ARE+F +MP KDI AWN+MITAY
Sbjct: 260 AGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAY 319
Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
+ G + A LF++MP +N+ TWN +ID Y+ N + A++L LM +S P+ TT
Sbjct: 320 TNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLMLRSAVSPDSTTLI 379
Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
S+L E +E H L+ +LG++ ET+L Y D++SA LAF RL
Sbjct: 380 SVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMY-----SRSGDLSSAWLAFRRLN 434
Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
KD ++WT+MI A +NHG + FA+ML+ G KP TF VLS C+H GLVEKGRK
Sbjct: 435 EKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACNHVGLVEKGRK 494
Query: 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424
F +S YG P EHYSCL D+L RAG V+EA VV M D +LG LLG+C
Sbjct: 495 IFKSISHVYGLGPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRDMCDEAILGTLLGSCMT 554
Query: 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFS 483
H +V + +GE L+++ PS SG Y L ANV A+ G W+E A V K M+ +VKK FS
Sbjct: 555 HNEVEVGRAVGEDLVKIDPSGSGGYTLLANVFASGGMWNEVASVWKIMKGSKVKKTPGFS 614
Query: 484 QIEVKGKDHTLLA 496
QIEV ++H +
Sbjct: 615 QIEVNARNHVFYS 627
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357114699|ref|XP_003559133.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 211/505 (41%), Positives = 283/505 (56%), Gaps = 21/505 (4%)
Query: 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA 63
+ G+V A +LFD M V+ M+ + R + +A LF AMPE R++V+ +A
Sbjct: 110 YAKAGRVHRARRLFDGMLTRGVVAWTCMVDAYCRAGRVSEARELFDAMPE--RSVVSWTA 167
Query: 64 MIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123
M+ GY +AG EAR++FD + E NV SWT ++ Y + LFDRMP + N
Sbjct: 168 MMHGYARAGMPREAREMFDRMPERNVVSWTVMVKAYADGGYFQDAMGLFDRMPQR--NSY 225
Query: 124 SWTTVVLGCAHNGLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMPNKD 173
SW V+ G G + + V+SWT M TGL +N +ARE+F MP KD
Sbjct: 226 SWNAVISGSFRAGRVDEAVRLFERMPHRNVVSWTAMVTGLAQNGRVSMAREFFDVMPCKD 285
Query: 174 IVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233
I AWNAMITAY + G M +A LF+ MP +++ +WN +ID YA+ + A L M +
Sbjct: 286 ITAWNAMITAYANNGEMNEARRLFDSMPAKDLVSWNTVIDGYAKKELKDEASGLFLDMLR 345
Query: 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293
S PN TT S+L E M+E + H LA LG ETSL Y D+
Sbjct: 346 SAASPNSTTLISVLVISESMVEVVQIHGLATTLGLLSETSLGNALLTMYSRIG-----DL 400
Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
SA LAF+RLE KD ++WT+MI A++NHGH + FA+ML+ G P TF VLS C
Sbjct: 401 PSAWLAFKRLEEKDAITWTSMIQAFANHGHASYALQAFAQMLEHGKNPSSTTFTAVLSAC 460
Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
SHAGLVE+G+ F + YG + EHY+CL DIL RAG ++EAM VV+ MPP D
Sbjct: 461 SHAGLVEEGKSVFRSIRHVYGLERTIEHYTCLIDILGRAGNMREAMDVVNAMPPDICDDA 520
Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS-ANVHAARGEWDEFAQVRKKM 472
+L LLGAC +H +V A +GE L + PS SG Y + ANV A+ G WDE A V K M
Sbjct: 521 ILRTLLGACMMHKEVDAAREVGEVLAKSDPSGSGGYYMVLANVLASGGLWDEMADVWKAM 580
Query: 473 E-RRVKKVASFSQIEVKGKDHTLLA 496
+ V+K SQI V ++H +
Sbjct: 581 KGSNVRKTPGVSQITVDARNHAFFS 605
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|308044597|ref|NP_001182884.1| uncharacterized protein LOC100501159 [Zea mays] gi|238007964|gb|ACR35017.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 201/494 (40%), Positives = 280/494 (56%), Gaps = 29/494 (5%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
G+V+EA +LFD M + + S +++ + RN L +A +F MP QRN+VA +AM+
Sbjct: 73 GRVQEARELFDVMPERNDYSWTTVVQGYARNGMLREAREMFDRMP--QRNVVAWTAMVKA 130
Query: 68 YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
YV G++ +A ++FD + E N YSW ++ISG+ +V E +LF+RMP + KNVVSWTT
Sbjct: 131 YVDCGQIQQAWELFDMMPERNSYSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTT 190
Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
M GL N + ARE+F +MP KD AWNA+IT Y +
Sbjct: 191 ---------------------MVAGLANNGLACRAREFFDRMPAKDTAAWNAIITVYANN 229
Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
G + +A LF+ M +++ TW+ +I+ Y++N + A+ + LM S PN T SIL
Sbjct: 230 GQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSAVSPNIRTLISIL 289
Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
E +E H L I LGF ETSL Y D+ SA AF+RLE KD
Sbjct: 290 VISESTVEVKQIHGLVIALGFLSETSLGNALLTMY-----SRSGDLMSAWFAFKRLEQKD 344
Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
++WT+++ A+++HG G+ FA+ML+ G KP TF VLS C H GLV KGRK F
Sbjct: 345 AITWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFK 404
Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
+ YG +P EHYSCL D+L RAG V+EA +V M RD +L LLGAC +H +
Sbjct: 405 SIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKELVDGMQQGMRDEAILATLLGACVVHNE 464
Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIE 486
V +A +GE L+ PS +G Y L ANV A+ G WDE A V K M + K+ FSQIE
Sbjct: 465 VEVAREVGEDLVRFDPSGTGGYRLLANVFASHGMWDETANVWKVMRGSKAKRTPGFSQIE 524
Query: 487 VKGKDHTLLAPMRE 500
V ++H + +E
Sbjct: 525 VNMRNHVFYSRDQE 538
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414873978|tpg|DAA52535.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays] gi|414873979|tpg|DAA52536.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 201/494 (40%), Positives = 280/494 (56%), Gaps = 29/494 (5%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
G+V+EA +LFD M + + S +++ + RN L +A +F MP QRN+VA +AM+
Sbjct: 194 GRVQEARELFDVMPERNDYSWTTVVQGYARNGMLREAREMFDRMP--QRNVVAWTAMVKA 251
Query: 68 YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
YV G++ +A ++FD + E N YSW ++ISG+ +V E +LF+RMP + KNVVSWTT
Sbjct: 252 YVDCGQIQQAWELFDMMPERNSYSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTT 311
Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
M GL N + ARE+F +MP KD AWNA+IT Y +
Sbjct: 312 ---------------------MVAGLANNGLACRAREFFDRMPAKDTAAWNAIITVYANN 350
Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
G + +A LF+ M +++ TW+ +I+ Y++N + A+ + LM S PN T SIL
Sbjct: 351 GQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSAVSPNIRTLISIL 410
Query: 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD 307
E +E H L I LGF ETSL Y D+ SA AF+RLE KD
Sbjct: 411 VISESTVEVKQIHGLVIALGFLSETSLGNALLTMY-----SRSGDLMSAWFAFKRLEQKD 465
Query: 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367
++WT+++ A+++HG G+ FA+ML+ G KP TF VLS C H GLV KGRK F
Sbjct: 466 AITWTSIVQAFADHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFK 525
Query: 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427
+ YG +P EHYSCL D+L RAG V+EA +V M RD +L LLGAC +H +
Sbjct: 526 SIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKELVDGMQQGMRDEAILATLLGACVVHNE 585
Query: 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQIE 486
V +A +GE L+ PS +G Y L ANV A+ G WDE A V K M + K+ FSQIE
Sbjct: 586 VEVAREVGEDLVRFDPSGTGGYRLLANVFASHGMWDETANVWKVMRGSKAKRTPGFSQIE 645
Query: 487 VKGKDHTLLAPMRE 500
V ++H + +E
Sbjct: 646 VNMRNHVFYSRDQE 659
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 199/590 (33%), Positives = 307/590 (52%), Gaps = 101/590 (17%)
Query: 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
G+ + A LFDEM + D VS MI ++RN +L KA LF MPE R++ + + ++
Sbjct: 103 NGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPE--RDVCSWNTILS 160
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLIS----------------------------- 97
GY + G VD+AR+VFD + E N SW +L+S
Sbjct: 161 GYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCL 220
Query: 98 --GYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------EVIS 145
G+ K +++ E R+ FD M K+++VVSW T++ G A NG I + +V +
Sbjct: 221 LGGFVKKKKIVEARQFFDSM--KVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFT 278
Query: 146 WTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
WT M +G +N M + ARE F +MP ++ V+WNAM+ YV + A ELF++MP RNV
Sbjct: 279 WTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNV 338
Query: 206 WTWN-------------------------------AMIDRYARNGPEGAAMKLLNLMFQS 234
TWN AMI Y+++G A++L LM +
Sbjct: 339 STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMERE 398
Query: 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRL---GFEQ-----ETSLTYKCTCHYVFWD 286
N ++ +S L++C ++ L L RL G+E L C C
Sbjct: 399 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG----- 453
Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
+ A F+ + KD+VSW MI YS HG G + R F M + G KPD+ T
Sbjct: 454 -----SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATM 508
Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406
V VLS CSH GLV+KGR+ F+ M++ YG +P ++HY+C+ D+L RAG ++EA ++ M
Sbjct: 509 VAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM- 567
Query: 407 PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
P E D + G LLGA R+HG+ +A+ +++ ++P +SG YVL +N++A+ G W +
Sbjct: 568 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 627
Query: 467 QVRKKM-ERRVKKVASFSQIEVKGKDHTL-----LAPMREMGYVVLKEVD 510
++R +M ++ VKKV +S IE++ K HT P ++ + L+++D
Sbjct: 628 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLD 677
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | ||||||
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 0.882 | 0.638 | 0.352 | 2.5e-74 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.972 | 0.635 | 0.316 | 3.1e-74 | |
| TAIR|locus:2044797 | 627 | AT2G35030 [Arabidopsis thalian | 0.882 | 0.717 | 0.343 | 2.8e-73 | |
| TAIR|locus:2027554 | 704 | AT1G56690 [Arabidopsis thalian | 0.876 | 0.634 | 0.340 | 1.1e-69 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.874 | 0.604 | 0.314 | 6.1e-60 | |
| TAIR|locus:2151501 | 697 | AT5G46460 [Arabidopsis thalian | 0.931 | 0.681 | 0.307 | 1.7e-59 | |
| TAIR|locus:2007116 | 787 | AT1G69350 "AT1G69350" [Arabido | 0.709 | 0.459 | 0.295 | 5.1e-58 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.809 | 0.557 | 0.339 | 2.2e-57 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.874 | 0.639 | 0.302 | 3.6e-57 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.837 | 0.591 | 0.299 | 3.7e-55 |
| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 167/474 (35%), Positives = 275/474 (58%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDG 67
G++ EA K+FD M + + VS +++ ++ N + AE+LF MPE +N V+ + M+ G
Sbjct: 93 GEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE--KNKVSWTVMLIG 150
Query: 68 YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
+++ GR+D+A K+++ I + + + TS+I G K +VDE R +FD M ++V++WTT
Sbjct: 151 FLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM--SERSVITWTT 208
Query: 128 VVLGCAHNGLI--AK--LEV------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAW 177
+V G N + A+ +V +SWT+M G +N + A E F MP K ++A
Sbjct: 209 MVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIAC 268
Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
NAMI+ G +A+A +F+ M +RN +W +I + RNG E A+ L LM +
Sbjct: 269 NAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVR 328
Query: 238 PNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294
P T SIL+ C + HA +R F+ + + Y+ G ++
Sbjct: 329 PTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYI--KCG---ELV 383
Query: 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLSDC 353
++L F+R +KD++ W ++I Y++HG G + ++F M SG TKP+E+TFV LS C
Sbjct: 384 KSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSAC 443
Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
S+AG+VE+G K + M +G KP HY+C+ D+L RAG+ EAM ++ M E D
Sbjct: 444 SYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTV-EPDAA 502
Query: 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
V G+LLGACR H + +A++ ++LIE++P +SG Y+L +N++A++G W + A+
Sbjct: 503 VWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAE 556
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 167/528 (31%), Positives = 290/528 (54%)
Query: 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAE 61
+Q GC V +A +FD M + + VS ++++ +++N + +A LF++ E+ +V+
Sbjct: 168 AQNGC---VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSR-ENWA-LVSW 222
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
+ ++ G+VK ++ EAR+ FD + +V SW ++I+GY ++ ++DE R+LFD P++ +
Sbjct: 223 NCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ--D 280
Query: 122 VVSWTTVVLGCAHNGLIAKL-EV---------ISWTTMCTGLERNAMTKLAREYFVQMPN 171
V +WT +V G N ++ + E+ +SW M G + ++A+E F MP
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPC 340
Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM 231
+++ WN MIT Y G +++A LF+ MP+R+ +W AMI Y+++G A++L M
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400
Query: 232 FQSRFMPNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWDWG 288
+ N ++ +S L++C ++ L H ++ G+E T ++ G
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYE--TGCFVGNALLLMYCKCG 458
Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
+ A F+ + KD+VSW MI YS HG G R F M + G KPD+ T V
Sbjct: 459 ---SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 515
Query: 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408
VLS CSH GLV+KGR+ F M++ YG P ++HY+C+ D+L RAG +++A ++ MP
Sbjct: 516 VLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMP-F 574
Query: 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQX 468
E D + G LLGA R+HG+ +A+ +++ ++P +SG YVL +N++A+ G W + +
Sbjct: 575 EPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKL 634
Query: 469 XXXXXXXXXXXA-SFSQIEVKGKDHTLLA-----PMREMGYVVLKEVD 510
+S IE++ K HT P ++ + L+E+D
Sbjct: 635 RVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELD 682
|
|
| TAIR|locus:2044797 AT2G35030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 164/477 (34%), Positives = 269/477 (56%)
Query: 8 GKVKEATKLFDEM-SQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
G ++EA +LFD + S+ + V+ +M++ +LR+ L AE LF+ MPE RN+V+ + MID
Sbjct: 91 GDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPE--RNVVSWNTMID 148
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
GY ++GR+D+A ++FDE+ E N+ SW S++ + ++DE LF+RMP + +VVSWT
Sbjct: 149 GYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRR--DVVSWT 206
Query: 127 TVVLGCAHNGLIAKLE----------VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA 176
+V G A NG + + +ISW M TG +N A + F MP +D +
Sbjct: 207 AMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFAS 266
Query: 177 WNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236
WN MIT ++ M +A LF+ MP++NV +W MI Y N A+ + + M +
Sbjct: 267 WNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGS 326
Query: 237 M-PNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292
+ PN T SIL++C G++E H L I Q+ + + ++ G +
Sbjct: 327 VKPNVGTYVSILSACSDLAGLVEGQQIHQL-ISKSVHQKNEIVTSALLN-MYSKSG---E 381
Query: 293 VNSARLAFER--LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350
+ +AR F+ + +D++SW +MI Y++HGHG + ++ +M K G KP +T++ +L
Sbjct: 382 LIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLL 441
Query: 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410
CSHAGLVEKG + F + R R EHY+CL D+ RAG++K+ ++
Sbjct: 442 FACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFIN-CDDARL 500
Query: 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467
GA+L AC +H +V +A + ++++E +G YVL +N++AA G+ +E A+
Sbjct: 501 SRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAE 557
|
|
| TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 160/470 (34%), Positives = 265/470 (56%)
Query: 10 VKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYV 69
+ EA +F+ M + + VS +M+ +++ + +AE+LF MPE RN V+ + M G +
Sbjct: 95 IVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPE--RNEVSWTVMFGGLI 152
Query: 70 KAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129
GR+D+ARK++D + +V + T++I G + +VDE R +FD M + +NVV+WTT++
Sbjct: 153 DDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEM--RERNVVTWTTMI 210
Query: 130 LGCAHNGLI---AKL-EV------ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179
G N + KL EV +SWT+M G + + A E+F MP K ++A NA
Sbjct: 211 TGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNA 270
Query: 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239
MI + + G +++A +F+LM R+ TW MI Y R G E A+ L M + P+
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPS 330
Query: 240 ETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSA 296
+ SIL+ C + HA +R F+ + + YV G ++ A
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYV--KCG---ELVKA 385
Query: 297 RLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356
+L F+R +KD++ W ++I Y++HG G + ++F M SGT P+++T + +L+ CS+A
Sbjct: 386 KLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYA 445
Query: 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLG 416
G +E+G + F M + P EHYSC D+L RAGQV +AM ++ M + D V G
Sbjct: 446 GKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTI-KPDATVWG 504
Query: 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466
ALLGAC+ H + +A+ ++L E +P ++G YVL ++++A+R +W + A
Sbjct: 505 ALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVA 554
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 151/480 (31%), Positives = 237/480 (49%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116
++ +++I Y G +D A KVF I E +V SW S+I+G+ + D+ LF +M
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 117 LK-LK-NVVSWTTVVLGCAH-NGLIAKLEVISW---TTMCTGLE-RNAM----TKL---- 161
+ +K + V+ V+ CA L +V S+ + L NAM TK
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 162 -AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG- 219
A+ F M KD V W M+ Y + + A E+ N MPQ+++ WNA+I Y +NG
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344
Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTY 276
P A + L Q N+ T S L++C G LE H+ + G +T
Sbjct: 345 PNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVT- 403
Query: 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336
H ++ G D+ +R F +E +DV W+AMI + HG G + +F +M +
Sbjct: 404 SALIH-MYSKCG---DLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQE 459
Query: 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396
+ KP+ +TF V CSH GLV++ F+ M YG P +HY+C+ D+L R+G ++
Sbjct: 460 ANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLE 519
Query: 397 EAMRVVSKMP-PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455
+A++ + MP P V GALLGAC++H ++ +A+ RL+EL+P + GA+VL +N+
Sbjct: 520 KAVKFIEAMPIPPSTS--VWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNI 577
Query: 456 HAARGEWDEFAQXXXXXXXXXXXXA-SFSQIEVKGKDHTLLA-----PMREMGYVVLKEV 509
+A G+W+ ++ S IE+ G H L+ PM E Y L EV
Sbjct: 578 YAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEV 637
|
|
| TAIR|locus:2151501 AT5G46460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 157/510 (30%), Positives = 261/510 (51%)
Query: 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMID 66
+ ++ +A LFDEM D VS SMI+ + D+ A LF MPE R++V+ +AM++
Sbjct: 79 SNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPE--RSVVSWTAMVN 136
Query: 67 GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126
G ++G+VD+A ++F ++ + +W S++ GY + +VD+ +LF +MP K NV+SWT
Sbjct: 137 GCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGK--NVISWT 194
Query: 127 TVVLGCAHNGLIAK-LEVIS-------------WT---TMCTGLERNAMTKLAREYFVQM 169
T++ G N + L++ +T T C M +++
Sbjct: 195 TMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKL 254
Query: 170 P--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKL 227
++ V+ ++IT Y + + + ++F+ V W A++ Y+ N A+ +
Sbjct: 255 GFLYEEYVS-ASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSI 313
Query: 228 LNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLTYKCTCHYVF 284
+ M ++ +PN++T S L SC G L+ H +A++LG E + + Y
Sbjct: 314 FSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYS- 372
Query: 285 WDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI 344
D G +VN A F ++ K +VSW ++I+ + HG G F +F +M++ +PDEI
Sbjct: 373 -DSG---NVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEI 428
Query: 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-EHYSCLADILRRAGQVKEAMRVVS 403
TF G+LS CSH G +EKGRK F MS R +HY+C+ DIL R G++KEA ++
Sbjct: 429 TFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIE 488
Query: 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463
+M + V L ALL ACR+H DV + + L SS AYVL +N++A+ G W
Sbjct: 489 RMVVKPNEMVWL-ALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWS 547
Query: 464 EFAQXXXXXXXXXXXXASFSQ-IEVKGKDH 492
++ S + ++GK H
Sbjct: 548 NVSKLRVKMKKNGIMKKPGSSWVVIRGKKH 577
|
|
| TAIR|locus:2007116 AT1G69350 "AT1G69350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 5.1e-58, Sum P(2) = 5.1e-58
Identities = 116/393 (29%), Positives = 202/393 (51%)
Query: 120 KNVVSWTTVVLGCAHNGLIA--------------KLEVISWTTMCTGLERNAMTKLARE- 164
+N+V+W +++ AH G++ K + + + + E + L ++
Sbjct: 368 RNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQI 427
Query: 165 --YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
+ ++ D N++I Y +G++ AS +FN + R+V TWN+M+ +++NG
Sbjct: 428 HGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSV 487
Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLEN--MLAHALAIRLGFEQETSLTYKC 278
A+ L + M+ S NE T +++ +C G LE + H L I G + + T
Sbjct: 488 EAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIIS-GLKDLFTDTALI 546
Query: 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338
++ G D+N+A F + ++ +VSW++MI AY HG F +M++SG
Sbjct: 547 D---MYAKCG---DLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESG 600
Query: 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398
TKP+E+ F+ VLS C H+G VE+G+ FNLM +++G P +EH++C D+L R+G +KEA
Sbjct: 601 TKPNEVVFMNVLSACGHSGSVEEGKYYFNLM-KSFGVSPNSEHFACFIDLLSRSGDLKEA 659
Query: 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458
R + +MP D V G+L+ CR+H + + I L ++ +G Y L +N++A
Sbjct: 660 YRTIKEMP-FLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAE 718
Query: 459 RGEWDEFAQXXXXXXXXXXXXA-SFSQIEVKGK 490
GEW+EF + +S IE+ K
Sbjct: 719 EGEWEEFRRLRSAMKSSNLKKVPGYSAIEIDQK 751
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 151/445 (33%), Positives = 233/445 (52%)
Query: 30 SMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV 89
S+I+++++N L A +F P R++V+ +A+I GY G ++ A+K+FDEI +V
Sbjct: 174 SLISMYVQNGRLEDAHKVFDKSPH--RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV 231
Query: 90 YSWTSLISGYFKARQVDEGRRLF-DRMPLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWT 147
SW ++ISGY + E LF D M ++ + + TVV CA +G I
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE-------- 283
Query: 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT 207
L R + F N IV NA+I Y G + A LF +P ++V +
Sbjct: 284 -----LGRQVHLWIDDHGFGS--NLKIV--NALIDLYSKCGELETACGLFERLPYKDVIS 334
Query: 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLE-NMLAHA-LA 263
WN +I Y A+ L M +S PN+ T SIL +C G ++ H +
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 394
Query: 264 IRL-GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322
RL G +SL Y G D+ +A F + K + SW AMI ++ HG
Sbjct: 395 KRLKGVTNASSLRTSLIDMYA--KCG---DIEAAHQVFNSILHKSLSSWNAMIFGFAMHG 449
Query: 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382
F LF+RM K G +PD+ITFVG+LS CSH+G+++ GR F M++ Y P+ EHY
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHY 509
Query: 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ 442
C+ D+L +G KEA +++ M E D V+ +LL AC++HG+V + + E LI+++
Sbjct: 510 GCMIDLLGHSGLFKEAEEMINMMEM-EPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 568
Query: 443 PSSSGAYVLSANVHAARGEWDEFAQ 467
P + G+YVL +N++A+ G W+E A+
Sbjct: 569 PENPGSYVLLSNIYASAGRWNEVAK 593
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 144/476 (30%), Positives = 249/476 (52%)
Query: 29 ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88
++++ ++ + ++ A+ +F M + RN+V+ +++I + + G EA VF + E
Sbjct: 191 SALVDMYSKCGNVNDAQRVFDEMGD--RNVVSWNSLITCFEQNGPAVEALDVFQMMLESR 248
Query: 89 V----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144
V + S+IS + G+ + R+ +KN ++L A + AK
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQEVHGRV---VKNDKLRNDIILSNAFVDMYAK---- 301
Query: 145 SWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN 204
C+ + K AR F MP ++++A +MI+ Y A + A +F M +RN
Sbjct: 302 -----CSRI------KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERN 350
Query: 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHA 261
V +WNA+I Y +NG A+ L L+ + P + +IL +C + E M AH
Sbjct: 351 VVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHV 410
Query: 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLD-VNSARLAFERLEAKDVVSWTAMILAYSN 320
++ GF+ ++ D + V L F ++ +D VSW AMI+ ++
Sbjct: 411 HVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQ 470
Query: 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE 380
+G+G + LF ML+SG KPD IT +GVLS C HAG VE+GR F+ M+R +G P +
Sbjct: 471 NGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRD 530
Query: 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
HY+C+ D+L RAG ++EA ++ +MP + D V+ G+LL AC++H ++ + Y+ E+L+E
Sbjct: 531 HYTCMVDLLGRAGFLEEAKSMIEEMPM-QPDSVIWGSLLAACKVHRNITLGKYVAEKLLE 589
Query: 441 LQPSSSGAYVLSANVHAARGEWDEFAQXXXXXXXXXXXXA-SFSQIEVKGKDHTLL 495
++PS+SG YVL +N++A G+W++ S I+++G DH +
Sbjct: 590 VEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFM 645
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 137/457 (29%), Positives = 228/457 (49%)
Query: 61 ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
E+ +D Y GR++ AR VFDE+ +V +W ++I Y + VDE +LF+ M K
Sbjct: 149 ETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEM--KDS 206
Query: 121 NVVS----WTTVVLGCAHNG-----------LI---AKLEVISWTTMCTGLERNAMTKLA 162
NV+ +V C G LI +++ T + T +A
Sbjct: 207 NVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMA 266
Query: 163 REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
RE+F +M +++ AM++ Y G + A +F+ ++++ W MI Y +
Sbjct: 267 REFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQ 326
Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSCE--GMLENML-AHALAIRLGFEQETSLTYKCT 279
A+++ M S P+ + S++++C G+L+ H+ G E E S+
Sbjct: 327 EALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALI 386
Query: 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339
Y G +++ R FE++ ++VVSW++MI A S HG LFARM +
Sbjct: 387 NMYA--KCG---GLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENV 441
Query: 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399
+P+E+TFVGVL CSH+GLVE+G+K F M+ Y P+ EHY C+ D+ RA ++EA+
Sbjct: 442 EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREAL 501
Query: 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459
V+ MP + V+ G+L+ ACR+HG++ + + +R++EL+P GA VL +N++A
Sbjct: 502 EVIESMPVAS-NVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYARE 560
Query: 460 GEWDEFAQXXXXXXXXXXXXAS-FSQIEVKGKDHTLL 495
W++ S+I+ GK H L
Sbjct: 561 QRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFL 597
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00018969001 | SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (644 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 510 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-69 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-61 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-33 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 8e-69
Identities = 156/528 (29%), Positives = 247/528 (46%), Gaps = 60/528 (11%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMI 65
G V A +FD M + D +S +MI+ + N + + LF M E +++ +++I
Sbjct: 236 GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295
Query: 66 DGYVKAGRVDEARKVFDEI----YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
G R++ + + +V SLI Y E ++F RM + K+
Sbjct: 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM--ETKD 353
Query: 122 VVSWTTVVLGCAHNGLIAK-----------------LEVISWTTMCTGLERNAMT----K 160
VSWT ++ G NGL K + + S + C L + +
Sbjct: 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
Query: 161 LA-REYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNG 219
LA R+ + +V NA+I Y + +A E+F+ +P+++V +W ++I N
Sbjct: 414 LAERKGLISY----VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469
Query: 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCE--GML---ENMLAHALAIRLGFE----- 269
A+ M + PN T + L++C G L + + AH L +GF+
Sbjct: 470 RCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528
Query: 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFR 329
L +C W+ Q + + KDVVSW ++ Y HG G
Sbjct: 529 ALLDLYVRCGRMNYAWN---QFNSH----------EKDVVSWNILLTGYVAHGKGSMAVE 575
Query: 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389
LF RM++SG PDE+TF+ +L CS +G+V +G + F+ M Y P +HY+C+ D+L
Sbjct: 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635
Query: 390 RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449
RAG++ EA ++KMP D V GALL ACR+H V + + + + EL P+S G Y
Sbjct: 636 GRAGKLTEAYNFINKMPI-TPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694
Query: 450 VLSANVHAARGEWDEFAQVRKKM-ERRVKKVASFSQIEVKGKDHTLLA 496
+L N++A G+WDE A+VRK M E + S +EVKGK H L
Sbjct: 695 ILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLT 742
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 1e-61
Identities = 130/436 (29%), Positives = 213/436 (48%), Gaps = 33/436 (7%)
Query: 68 YVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTT 127
+VK G + +AR++FDE+ E N+ SW ++I G A E LF M + T
Sbjct: 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227
Query: 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187
VV+ A GL C T + + FV A+I Y
Sbjct: 228 VVMLRASAGL-GSARAGQQLHCCV-----LKTGVVGDTFVSC---------ALIDMYSKC 272
Query: 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247
G++ A +F+ MP++ WN+M+ YA +G A+ L M S ++ T + ++
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 248 TSCE--GMLENM-LAHALAIRLGFEQE----TSLTYKCTCHYVFWDWGFQLDVNSARLAF 300
+LE+ AHA IR GF + T+L ++ WG + AR F
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD------LYSKWGR---MEDARNVF 383
Query: 301 ERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360
+R+ K+++SW A+I Y NHG G + +F RM+ G P+ +TF+ VLS C ++GL E
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG 420
+G + F MS + KPRA HY+C+ ++L R G + EA ++ + P + + ALL
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN-MWAALLT 502
Query: 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR-VKKV 479
ACR+H ++ + E+L + P YV+ N++ + G E A+V + ++R+ +
Sbjct: 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562
Query: 480 ASFSQIEVKGKDHTLL 495
+ + IEVK +DH+
Sbjct: 563 PACTWIEVKKQDHSFF 578
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 3e-36
Identities = 108/393 (27%), Positives = 180/393 (45%), Gaps = 37/393 (9%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121
+AM+ +V+ G + A VF ++ E +++SW L+ GY KA DE L+ RM
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM------ 178
Query: 122 VVSWTTVVLGCAHNGLIAKLEVISWTTM---CTGLERNAMTKLAREYFVQMP-NKDIVAW 177
W V + +V ++ + C G+ A + + V+ D+
Sbjct: 179 --LWAGV-----------RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
Query: 178 NAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237
NA+IT YV G++ A +F+ MP+R+ +WNAMI Y NG ++L M +
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 238 PNETTCTSILTSCEGMLENMLA---HALAIRLGFEQETSLTYKCTCHYVFWD-WGFQLDV 293
P+ T TS++++CE + + L H ++ GF + S+ Y+ WG
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG----- 340
Query: 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353
A F R+E KD VSWTAMI Y +G + +A M + PDEIT VLS C
Sbjct: 341 -EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV 413
+ G ++ G K L R G + L ++ + + +A+ V +P E+D +
Sbjct: 400 ACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP--EKDVI 456
Query: 414 VLGALLGACRL-HGDVRMADYIGERLIELQPSS 445
+++ RL + + + L+ L+P+S
Sbjct: 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 4e-33
Identities = 108/396 (27%), Positives = 178/396 (44%), Gaps = 56/396 (14%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK- 120
+A+I YVK G V AR VFD + + SW ++ISGYF+ + EG LF M +L
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-RELSV 284
Query: 121 --NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178
++++ T+V+ C E++ + + + + V D+ N
Sbjct: 285 DPDLMTITSVISAC---------ELLGDERLGREMHGYVVK---TGFAV-----DVSVCN 327
Query: 179 AMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238
++I Y+ G+ +A ++F+ M ++ +W AMI Y +NG A++ LM Q P
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387
Query: 239 NETTCTSILTSCE--GMLE-NMLAHALAIRLGFEQETSLT-------YKCTCHYVFWDWG 288
+E T S+L++C G L+ + H LA R G + KC C
Sbjct: 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-------- 439
Query: 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348
++ A F + KDV+SWT++I + F+ F +ML + KP+ +T +
Sbjct: 440 ----IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIA 494
Query: 349 VLSDCSHAGLVEKGRKTFNLMSRA----YGFKPRAEHYSCLADILRRAGQVKEAMRVVSK 404
LS C+ G + G++ + R GF P A L D+ R G++ A ++
Sbjct: 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRCGRMNYAW---NQ 546
Query: 405 MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE 440
HE+D V LL HG MA + R++E
Sbjct: 547 FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 2e-19
Identities = 67/268 (25%), Positives = 120/268 (44%), Gaps = 28/268 (10%)
Query: 8 GKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAM------PESQRNIVAE 61
G + +A +LFDEM + + S ++I + + +A ALFR M E + +V
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
Query: 62 SAMID-GYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK 120
A G +AG+ + + G+ + +LI Y K +++ R +FD MP K
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-- 288
Query: 121 NVVSWTTVVLGCAHNGLI--------------AKLEVISWTTM---CTGLERNAMTKLAR 163
V+W +++ G A +G ++ +++ M + L K A
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 164 EYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222
++ DIVA A++ Y G M A +F+ MP++N+ +WNA+I Y +G
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408
Query: 223 AAMKLLNLMFQSRFMPNETTCTSILTSC 250
A+++ M PN T ++L++C
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 9e-19
Identities = 77/342 (22%), Positives = 137/342 (40%), Gaps = 35/342 (10%)
Query: 106 DEGRRLFD----RMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161
E LF+ P L ++ +V C I ++ + W +G E
Sbjct: 104 REALELFEILEAGCPFTL-PASTYDALVEACIALKSIRCVKAVYWHVESSGFE------- 155
Query: 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE 221
D N ++ +V G + A LF+ MP+RN+ +W +I G
Sbjct: 156 ----------PDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY 205
Query: 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA----HALAIRLGFEQETSLTYK 277
A L M++ T +L + G L + A H ++ G +T ++
Sbjct: 206 REAFALFREMWEDGSDAEPRTFVVMLRASAG-LGSARAGQQLHCCVLKTGVVGDTFVS-- 262
Query: 278 CTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337
C ++ G D+ AR F+ + K V+W +M+ Y+ HG+ + L+ M S
Sbjct: 263 CALIDMYSKCG---DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397
G D+ TF ++ S L+E ++ + R GF + L D+ + G++++
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMED 378
Query: 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439
A V +MP ++ + AL+ HG A + ER+I
Sbjct: 379 ARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 34/269 (12%)
Query: 8 GKVKEATKLFDEMSQP----DPVSCASMITVFLRNHDLPKAE----ALFRAMPESQRNIV 59
G +EA L+ EM D + + MI +F R L A+ L R +IV
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL--DIV 361
Query: 60 AESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK- 118
A +A++D Y K GR+++AR VFD + N+ SW +LI+GY + + +F+RM +
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 119 -LKNVVSWTTVVLGCAHNGLI---------------AKLEVISWTTMCTGLERNAMTKLA 162
N V++ V+ C ++GL K + + M L R + A
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 163 REYFVQMPNKDIV-AWNAMITAYVDAGNMA----QASELFNLMPQRNVWTWNAMIDRYAR 217
+ P K V W A++TA N+ A +L+ + P++ + + +++ Y
Sbjct: 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYVVLLNLYNS 540
Query: 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSI 246
+G + A K++ + + + + CT I
Sbjct: 541 SGRQAEAAKVVETL-KRKGLSMHPACTWI 568
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 62/308 (20%), Positives = 121/308 (39%), Gaps = 51/308 (16%)
Query: 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAI- 264
N+ + +G A+KLL M + R +E ++ CE + E + A+
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 265 ---RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH 321
LG ++ +F +G ++ A F ++ +D+ SW ++ Y+
Sbjct: 115 SHPSLGVRLGNAML------SMFVRFG---ELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165
Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
G+ + L+ RML +G +PD TF VL C + +GR+ + R +GF+ +
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDV 224
Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHER------------------------------- 410
+ L + + G V A V +MP +
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 411 --DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS-ANVHAARGEWDEFAQ 467
D + + +++ AC L GD R+ + +++ + + S ++ + G W E +
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 468 VRKKMERR 475
V +ME +
Sbjct: 345 VFSRMETK 352
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQR----NVWTWNAMIDRYAR 217
D+V +N +I Y G + +A +LFN M +R NV+T++ +ID +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
DVV++ +I Y G + +LF M K G KP+ T+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFK 101
++V + +IDGY K G+V+EA K+F+E+ + NVY+++ LI G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 54/261 (20%), Positives = 96/261 (36%), Gaps = 47/261 (18%)
Query: 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQR-----NVWTWNAMIDRYARNGPEGAAMK 226
K V+ + I V G +A ELF ++ T++A+++
Sbjct: 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKA 144
Query: 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286
+ + S F P++ +L L H KC
Sbjct: 145 VYWHVESSGFEPDQYMMNRVL----------LMHV---------------KC-------- 171
Query: 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346
G +D AR F+ + +++ SW +I + G+ + F LF M + G+ + TF
Sbjct: 172 -GMLID---ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227
Query: 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC-LADILRRAGQVKEAMRVVSKM 405
V +L + G G++ + + SC L D+ + G +++A V M
Sbjct: 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDT--FVSCALIDMYSKCGDIEDARCVFDGM 285
Query: 406 PPHERDHVVLGALLGACRLHG 426
P E+ V ++L LHG
Sbjct: 286 P--EKTTVAWNSMLAGYALHG 304
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 88 NVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LK-NVVSWTTVVLGCAH 134
+V ++ +LI GY K +V+E +LF+ M + +K NV +++ ++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250
+V T+N +ID Y + G A+KL N M + PN T + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384
+V RL + ++G K D + ++S C+ +G V+ + F+ M A G + +
Sbjct: 457 LRVLRL---VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGA 512
Query: 385 LADILRRAGQVKEA------MRVVSKMPPHERDHVVLGALLGACRLHGDV-RMADYIGER 437
L D RAGQV +A MR + P D VV AL+ AC G V R D + E
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKP----DRVVFNALISACGQSGAVDRAFDVLAEM 568
Query: 438 LIELQP 443
E P
Sbjct: 569 KAETHP 574
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 6e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 88 NVYSWTSLISGYFKARQVDEGRRLFDRMP 116
+V ++ +LI G +A +VDE L D M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 4e-04
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 62 SAMIDGYVKAGRVDEARKVFDE 83
+ +IDG +AGRVDEA ++ DE
Sbjct: 11 NTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 90 YSWTSLISGYFKARQVDEGRRLFDRM 115
++ SLISGY KA +++E LF M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 175 VAWNAMITAYVDAGNMAQASELFNLMPQRNV 205
V +N++I+ Y AG + +A ELF M ++ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEI 84
+++I GY KAG+++EA ++F E+
Sbjct: 4 NSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 90 YSWTSLISGYFKARQVDEGRRLFDRM 115
++ +LI G KA +V+E LF M
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 60/293 (20%), Positives = 116/293 (39%), Gaps = 35/293 (11%)
Query: 164 EYFVQMPNKDIVA----WNAMITAYVDAGNMAQASELFNLMPQRNV----WTWNAMIDRY 215
E F +M N + A + A+I AG +A+A + +M +NV +NA+I
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 216 ARNGPEGAAMKLLNLMFQSR--FMPNETTCTSILTSC------EGMLE--NMLAHALAIR 265
++G A +L M P+ T +++ +C + E M+ H I+
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI-HEYNIK 611
Query: 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDV----VSWTAMILAYSNH 321
E T C+ DW F A ++ ++ K V V ++A++ +
Sbjct: 612 GTPEVYTIAVNSCS---QKGDWDF------ALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381
G + F + K G K +++ ++ CS+A +K + + + ++ +P
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVST 721
Query: 382 YSCLADILRRAGQVKEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMAD 432
+ L L Q+ +A+ V+S+M + + LL A D +
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 62 SAMIDGYVKAGRVDEARKVFDEIYEGNV 89
+ +IDG KAGRV+EA ++F E+ E +
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.58 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.37 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.19 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.18 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.17 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.14 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.08 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.08 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.99 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.97 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.93 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.86 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.84 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.77 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.77 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.76 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.75 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.66 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.65 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.57 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.56 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.56 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.55 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.51 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.51 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.47 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.38 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.34 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.28 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.25 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.18 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.17 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.13 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.11 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.08 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.07 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.97 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.95 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.92 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.91 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.9 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.89 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.89 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.88 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.86 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.81 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.8 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.8 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.79 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.78 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.76 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.74 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.73 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.69 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.68 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.6 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.59 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.49 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.47 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.44 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.33 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.33 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.32 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.28 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.27 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.26 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.24 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.2 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.18 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.17 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.11 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.1 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.07 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.06 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.99 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.98 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.87 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.86 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.85 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.84 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.78 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.77 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.77 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.72 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.72 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.71 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.66 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.54 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.5 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.48 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.42 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.41 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.35 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.33 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.25 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.15 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.03 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.01 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.96 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.95 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.93 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.86 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.79 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.77 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.76 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.72 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.72 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.63 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.6 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.37 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.27 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.25 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.21 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.01 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.0 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.0 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.96 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.88 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.72 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.59 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.26 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.94 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.87 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.86 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.84 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.7 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.69 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.67 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.57 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.51 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.44 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.42 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.4 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.32 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.29 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.24 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.19 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.92 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 92.51 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.46 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.2 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.2 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.12 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 91.99 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.69 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 91.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.44 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.41 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.38 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.19 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.17 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.85 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.52 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.45 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.4 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.19 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.11 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.07 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.02 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.96 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.81 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.78 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.55 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.38 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.25 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 89.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.15 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.03 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.94 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.84 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.54 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 88.47 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.35 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.66 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.33 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 87.32 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.09 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.81 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 86.73 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.65 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.44 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.72 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.63 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 85.62 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.38 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 85.25 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.12 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.07 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.64 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.0 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.62 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.55 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.34 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 82.98 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.64 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.6 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 82.21 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.21 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.92 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 81.67 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.63 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 81.47 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.37 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 80.94 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.94 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.82 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.8 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 80.61 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 80.51 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.45 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-73 Score=584.79 Aligned_cols=498 Identities=30% Similarity=0.483 Sum_probs=477.4
Q ss_pred CCcccCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCChhhHH
Q 046354 1 TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 1 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
|++|++.|++++|.++|++|++||..+||++|.+|++.|++++|.++|++|.+. .||..+|+.++.+|++.|+.+.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 457899999999999999999999999999999999999999999999999876 699999999999999999999999
Q ss_pred HHHHhhc----cCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh-------------
Q 046354 79 KVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL------------- 141 (510)
Q Consensus 79 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a------------- 141 (510)
+++..+. .||..+||.|+.+|++.|++++|.++|++|.. ||..+|++++.+|++.|+.++|
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 9999994 48999999999999999999999999999998 9999999999999999999988
Q ss_pred -hHHHHHHHHHHHHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 046354 142 -EVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216 (510)
Q Consensus 142 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 216 (510)
+..+|..++.+|++.|+++.|.++++.+. .++..+|+.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|+
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 78899999999999999999999999887 7899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh---hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccCh
Q 046354 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293 (510)
Q Consensus 217 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (510)
+.|+.++|+.+|++|.. ++.||..||+.++.+|.+ +.....++..+.+.|+.++..++++++.+| +++|++
T Consensus 467 ~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y-----~k~G~~ 540 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY-----VRCGRM 540 (857)
T ss_pred HCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH-----HHcCCH
Confidence 99999999999999986 699999999999999864 566788899999999999999999999999 999999
Q ss_pred hhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhh
Q 046354 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373 (510)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 373 (510)
++|.++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+
T Consensus 541 ~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 541 NYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999999999666
Q ss_pred CCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
|+.|+..+|++++++|++.|++++|.+++++|+ ..||..+|++|+.+|..+|+.+.++...+++.+++|+++..|..++
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Confidence 999999999999999999999999999999997 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHH-HhhccccceeEEEeCCeeeEeeccc-----cccceeeccc
Q 046354 454 NVHAARGEWDEFAQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPM-----REMGYVVLKE 508 (510)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 508 (510)
++|...|+|++|.++.+.|+ +|+++.||.||+++++++|.|++++ .++||.+|++
T Consensus 699 n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~ 759 (857)
T PLN03077 699 NLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759 (857)
T ss_pred HHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999854 5677777764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-70 Score=553.38 Aligned_cols=480 Identities=26% Similarity=0.429 Sum_probs=433.7
Q ss_pred CcccCCCChHHHHHHHhhcC-----CCChhhHHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCCh
Q 046354 2 SQFGCTGKVKEATKLFDEMS-----QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRV 74 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~ 74 (510)
..|.+.|++++|+++|+.|. .||..+|+.++.+|.+.++++.+.+++..|.+. .||..+|+.|+.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 35677888888888888885 467888888888888888888888888888765 57888888888888888888
Q ss_pred hhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHH
Q 046354 75 DEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG 152 (510)
Q Consensus 75 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~ 152 (510)
+.|.++|++|.+||..+||.+|.+|++.|++++|.++|++|.+. .||..||+.++.+++..
T Consensus 175 ~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~----------------- 237 (697)
T PLN03081 175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL----------------- 237 (697)
T ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC-----------------
Confidence 88888888888888888888888888888888888888888765 67777777766666554
Q ss_pred HHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 046354 153 LERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLL 228 (510)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 228 (510)
|..+.+.+++..+. .+|..+|++++.+|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|
T Consensus 238 ----~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 ----GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred ----CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 45555666655443 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhhh---hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC
Q 046354 229 NLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305 (510)
Q Consensus 229 ~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 305 (510)
++|.+.|+.||..||+.++.+|.+ +.....++..+.+.|++++..+++.++.+| +++|++++|.++|++|.+
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y-----~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY-----SKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH-----HHCCCHHHHHHHHHhCCC
Confidence 999999999999999999999864 456778888899999999999999999999 999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
+|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (510)
+++|++.|++++|.+++++|. ..|+..+|++|+.+|..+|+++.|..+++++.++.|+++.+|..++++|.+.|+|++|
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAP-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 999999999999999999997 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhccccceeEEEeCCeeeEeeccc-----cccceeeccc
Q 046354 466 AQVRKKME-RRVKKVASFSQIEVKGKDHTLLAPM-----REMGYVVLKE 508 (510)
Q Consensus 466 ~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 508 (510)
.++++.|+ +|+.+.|+.||+++++++|.|+++. .+++|..|++
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 99999999 9999999999999999999999853 4456655543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=515.33 Aligned_cols=468 Identities=24% Similarity=0.351 Sum_probs=442.3
Q ss_pred CCcccCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCChhhHH
Q 046354 1 TSQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 1 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
|++|++.|+++.|.++|++|.+||..+|+.+|.+|++.|++++|+++|++|... .||..+|+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 356899999999999999999999999999999999999999999999999865 699999999999999999999999
Q ss_pred HHHHhhc----cCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh-------------
Q 046354 79 KVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL------------- 141 (510)
Q Consensus 79 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a------------- 141 (510)
+++..+. .||..+||.||.+|++.|+++.|.++|++|.. ||..+|++++.+|++.|+.+++
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999984 48999999999999999999999999999998 9999999999999999999988
Q ss_pred -hHHHHHHHHHHHHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 046354 142 -EVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA 216 (510)
Q Consensus 142 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 216 (510)
+..+|+.++.++.+.|+.+.+.+++..+. .||..+|+.++.+|++.|++++|.++|++|..||..+|+.+|.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 88999999999999999999999999887 7999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh---hhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccCh
Q 046354 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE---GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293 (510)
Q Consensus 217 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (510)
+.|++++|+++|++|.+.|+.||..||+.++.+|. .......++..+.+.|..++..+++.++.+| ++.|++
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y-----~k~g~~ 440 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY-----SKCKCI 440 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-----HHcCCH
Confidence 99999999999999999999999999999999886 4566778888899999999999999999999 999999
Q ss_pred hhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhh
Q 046354 294 NSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373 (510)
Q Consensus 294 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 373 (510)
++|.++|++|.++|..+|++++.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+.
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~- 518 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT- 518 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999986 59999999999999999999999999999999998
Q ss_pred CCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHh--cCCCCchhHHH
Q 046354 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIE--LQPSSSGAYVL 451 (510)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~ 451 (510)
|+.++..++++|+++|+++|++++|.++|+.+ .||..+|++++.+|.++|+.++|.++|++|.+ ..|+ ..+|..
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ 594 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFIS 594 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHH
Confidence 99999999999999999999999999999998 68999999999999999999999999999985 4455 468999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhccccc
Q 046354 452 SANVHAARGEWDEFAQVRKKMERRVKKVAS 481 (510)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 481 (510)
++.+|.+.|++++|.++|+.|.+.....|+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999854555554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-60 Score=478.70 Aligned_cols=467 Identities=16% Similarity=0.226 Sum_probs=425.1
Q ss_pred cccCCCChHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhH
Q 046354 3 QFGCTGKVKEATKLFDEMSQ-----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEA 77 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 77 (510)
.|++.|++++|+++|++|.+ ++...++.++.+|.+.|.+++|..+|+.|.. ||..+|+.++.+|++.|+++.|
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHHHH
Confidence 46788999999999999984 4556677888899999999999999999998 9999999999999999999999
Q ss_pred HHHHHhhc----cCChhhHHHHHHHHHcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchh----------
Q 046354 78 RKVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKL---------- 141 (510)
Q Consensus 78 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a---------- 141 (510)
.++|+.|. .||..+|+.||.+|++.|+++.|.++|++|.+. .||..||+.+|.+|++.|+++.|
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 99999995 489999999999999999999999999999976 79999999999999999999988
Q ss_pred ----hHHHHHHHHHHHHhcCchHHHHHHHhhCC------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhh
Q 046354 142 ----EVISWTTMCTGLERNAMTKLAREYFVQMP------NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ----RNVWT 207 (510)
Q Consensus 142 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 207 (510)
+..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+ |+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 78999999999999999999999999984 68999999999999999999999999999986 78899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh---hhhhhHHHHHHHHhCCCcchhhhhhhhhhccc
Q 046354 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284 (510)
Q Consensus 208 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (510)
|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.++.. ......++..+.+.|..|+..+++.++.+|
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay-- 694 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC-- 694 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999998864 455677788888999999999999999999
Q ss_pred cccccccChhhHHHHhcccC----CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHH
Q 046354 285 WDWGFQLDVNSARLAFERLE----AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360 (510)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 360 (510)
++.|++++|.++|++|. .|+..+||+||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++
T Consensus 695 ---~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 695 ---SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred ---HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999995 48999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cC-------------------ChHHHHHHHhhCCCC--CCcHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AG-------------------QVKEAMRVVSKMPPH--ERDHVVL 415 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g-------------------~~~~A~~~~~~~~~~--~p~~~~~ 415 (510)
.|.++++.|.+. |+.||..+|++++..|.+ ++ ..++|..+|++|.+. .||..+|
T Consensus 772 ~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 772 VGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 999999999998 999999999999876432 21 236799999999865 8999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHH-hcCCCCchhHHHHHHHHHHcCCC-hHHHHHHHHHH-Hhhcccc
Q 046354 416 GALLGACRLHGDVRMADYIGERLI-ELQPSSSGAYVLSANVHAARGEW-DEFAQVRKKME-RRVKKVA 480 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~-~~~~~~p 480 (510)
+.++.++...+....+..+++.+. .-.+.+..+|..++..+ |++ ++|..++++|. .|+.+.-
T Consensus 851 ~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 851 SQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 999988888889999988888775 33345556799998876 443 58999999999 7766544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=445.72 Aligned_cols=445 Identities=15% Similarity=0.180 Sum_probs=402.9
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhcccc---CCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHH
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPES---QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 98 (510)
.++...|..++..+++.|++++|.++|++|.+. .++...++.++..|.+.|.+++|.++|+.|.+||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 467888999999999999999999999999886 35777888899999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchh--------------hHHHHHHHHHHHHhcCchHHH
Q 046354 99 YFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKL--------------EVISWTTMCTGLERNAMTKLA 162 (510)
Q Consensus 99 ~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a--------------~~~~~~~l~~~~~~~~~~~~a 162 (510)
|++.|+++.|.++|++|.+. .||..+|+.++.+|++.|+.+.+ +..+|+.++.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999987 89999999999999999999888 789999999999999999999
Q ss_pred HHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 163 REYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMP------QRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 163 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999986 7999999999999999999999999999985 3899999999999999999999999999999
Q ss_pred HCCCCCCHhhHHHHHHHhhh---hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC----
Q 046354 233 QSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---- 305 (510)
Q Consensus 233 ~~g~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---- 305 (510)
+.|+.|+..+|+.+|.++.+ ......++..+...|+.|+..+++.++.+| ++.|++++|.++|+.|.+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~-----~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA-----GHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999998864 455667777788899999999999999999 999999999999999875
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.+
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSIL 760 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999887 999999999999
Q ss_pred HhHHhhcCChHHHHHHHhhCCCC--CCcHHHHHHHHHHHHh----h-------------------CCHHHHHHHHHHHHh
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPH--ERDHVVLGALLGACRL----H-------------------GDVRMADYIGERLIE 440 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~----~-------------------~~~~~A~~~~~~~~~ 440 (510)
+.+|++.|++++|.+++++|.+. .||..+|+.++..|.+ . +..+.|..+|++|++
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999764 8899999999876542 1 124679999999995
Q ss_pred cC--CCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 441 LQ--PSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 441 ~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.. |+ ..+|..++.++...+.++.+..+++.|.
T Consensus 841 ~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 841 AGTLPT-MEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred CCCCCC-HHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 43 44 4678888888888888888888888776
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-51 Score=410.99 Aligned_cols=408 Identities=19% Similarity=0.210 Sum_probs=371.7
Q ss_pred CcccCCCChHHHHHHHhhcC----CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhH
Q 046354 2 SQFGCTGKVKEATKLFDEMS----QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEA 77 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 77 (510)
.+|++.++++.|..++..|. .||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|
T Consensus 131 ~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHH
Confidence 56889999999999999996 69999999999999999999999999999987 9999999999999999999999
Q ss_pred HHHHHhhc----cCChhhHHHHHHHHHcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 046354 78 RKVFDEIY----EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151 (510)
Q Consensus 78 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~ 151 (510)
.++|++|. .|+..+|+.++.++++.|+.+.+.+++..+.+. .||..+++.++.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~--------------------- 267 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID--------------------- 267 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH---------------------
Confidence 99999994 488999999999999999999999999988876 667666665554
Q ss_pred HHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChHHHHHH
Q 046354 152 GLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGPEGAAMKL 227 (510)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~ 227 (510)
+|++.|++++|.++|+.|.++|..+|+.++.+|++.|++++|.++|++|.+ ||..||+.++.+|++.|++++|.++
T Consensus 268 ~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 556677888999999999999999999999999999999999999999954 8999999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--
Q 046354 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-- 305 (510)
Q Consensus 228 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 305 (510)
+..|.+.|+.||..+++.++..+++............+ -..++..+|+.++..| ++.|+.++|.++|++|.+
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~-m~~~d~~t~n~lI~~y-----~~~G~~~~A~~lf~~M~~~g 421 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR-MPRKNLISWNALIAGY-----GNHGRGTKAVEMFERMIAEG 421 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh-CCCCCeeeHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999988765554444443332 2457899999999999 999999999999999875
Q ss_pred --CChhhHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchh
Q 046354 306 --KDVVSWTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382 (510)
Q Consensus 306 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (510)
||..||++++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++.++++.|++++|.++++++ ++.|+..+|
T Consensus 422 ~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~ 497 (697)
T PLN03081 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMW 497 (697)
T ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHH
Confidence 8999999999999999999999999999986 699999999999999999999999999998876 788999999
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQ 442 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 442 (510)
++|+.+|...|+++.|..+++++.+..| +..+|..++..|.+.|++++|.+++++|.+..
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987878 46799999999999999999999999999543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-30 Score=273.25 Aligned_cols=460 Identities=15% Similarity=0.061 Sum_probs=381.2
Q ss_pred cccCCCChHHHHHHHhhcCC--C-ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHH
Q 046354 3 QFGCTGKVKEATKLFDEMSQ--P-DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~ 78 (510)
.+...|++++|.+.|+.+.+ | +...+..++..+.+.|++++|..+++.+....| +..++..+...+...|++++|.
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHH
Confidence 35678999999999998872 2 345667788889999999999999999987755 5678888999999999999999
Q ss_pred HHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchh-------------
Q 046354 79 KVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKL------------- 141 (510)
Q Consensus 79 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a------------- 141 (510)
+.|+++.+ .+...+..+...+...|++++|.+.|+++... +.+..++..+...+...|+.+.+
T Consensus 486 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 565 (899)
T TIGR02917 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565 (899)
T ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999854 34567788889999999999999999999877 55677888888889899988887
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRY 215 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 215 (510)
+...+..++..+...|++++|.++++.+. +.+..+|..+..+|.+.|++++|...|+.+.+ .+...+..+...+
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44567778899999999999999999987 55678899999999999999999999998765 4567788999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh---hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccC
Q 046354 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG---MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292 (510)
Q Consensus 216 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (510)
.+.|++++|...++++.+.. +.+..++..+...+.. ..........+... .+.+...+..+...+ ...|+
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~g~ 718 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-HPKAALGFELEGDLY-----LRQKD 718 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcCChHHHHHHHHHH-----HHCCC
Confidence 99999999999999998743 2234444444444433 33333333333333 345666777778888 89999
Q ss_pred hhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHH
Q 046354 293 VNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 293 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 370 (510)
+++|...|+.+.. |+..++..++.++.+.|++++|...++.+.+.. +.+...+..+...+...|+.++|.++|+++.
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999998865 555778888999999999999999999998863 5667788888899999999999999999998
Q ss_pred HhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
+. .++++.+++.++..+...|+ .+|...++++.+..| +...+..+...+...|++++|...++++++.+|.++.++
T Consensus 798 ~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 874 (899)
T TIGR02917 798 KK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874 (899)
T ss_pred Hh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 74 45678888999999999999 889999999877666 566778888889999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHH
Q 046354 450 VLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++.++.+.|++++|.+++++|.
T Consensus 875 ~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 875 YHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-29 Score=266.19 Aligned_cols=461 Identities=14% Similarity=0.087 Sum_probs=308.9
Q ss_pred ccCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~ 79 (510)
+.+.|++++|...++.+. +.+...+..+...+.+.|++++|.++|+++.+..| +...+..+...+...|++++|.+
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHH
Confidence 345566666666666654 23445556666666666666666666666655544 23344444445555555555555
Q ss_pred HHHhhcc-------------------------------------CChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCC
Q 046354 80 VFDEIYE-------------------------------------GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKN 121 (510)
Q Consensus 80 ~~~~~~~-------------------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~ 121 (510)
.++.+.+ ++..++..+...+...|++++|.+.|+++.+. +.+
T Consensus 419 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 498 (899)
T TIGR02917 419 DLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498 (899)
T ss_pred HHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Confidence 5544422 23345555556666666666666666665554 233
Q ss_pred hhhHHHHHHHHHhcCCcchh-------------hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHH
Q 046354 122 VVSWTTVVLGCAHNGLIAKL-------------EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYV 185 (510)
Q Consensus 122 ~~~~~~ll~~~~~~~~~~~a-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 185 (510)
...+..+...+...|+++.+ +...+..+...+.+.|+.++|...++++. +.+...+..++..|.
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 44455555555555555554 34455556666666667777766666654 334455666667777
Q ss_pred hcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh---hHH
Q 046354 186 DAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN---MLA 259 (510)
Q Consensus 186 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~~ 259 (510)
+.|++++|..+++.+.+ .+...|..+..++...|++++|...|+++.+.. +.+...+..+...+....+. ...
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776654 355667777777777777777777777776542 12223333333333222222 222
Q ss_pred HHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046354 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336 (510)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 336 (510)
...... ..+.+...+..+...+ ...|++++|.++++.+.+ .+...+..+...+...|++++|...|+.+..
T Consensus 658 ~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 658 LKRALE-LKPDNTEAQIGLAQLL-----LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHh-cCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 222221 2234456667777777 788888888888887765 3455677788888888899999998888887
Q ss_pred cCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHH
Q 046354 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVL 415 (510)
Q Consensus 337 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 415 (510)
. .|+..++..+..++...|++++|.+.++.+.+. .+.++..+..++..|...|++++|.+.|+++.+..| +..++
T Consensus 732 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 732 R--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred h--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5 455577777888888889999999998888873 455777888888999999999999999998876655 66788
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRV 476 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 476 (510)
+.+...+...|+ .+|...++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888899999999 789999999999999999889999999999999999999999888433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-21 Score=207.63 Aligned_cols=462 Identities=16% Similarity=0.070 Sum_probs=257.6
Q ss_pred ccCCCChHHHHHHHhhcCC--CChhhH-----------------HHHHHHHHhcCChhhHHHHHHhccccCCChhHHHH-
Q 046354 4 FGCTGKVKEATKLFDEMSQ--PDPVSC-----------------ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESA- 63 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~- 63 (510)
+.+.|+.++|.+.+++..+ |+...+ ..+.+.+.+.|++++|++.|+.+.+..|+......
T Consensus 72 ~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~ 151 (1157)
T PRK11447 72 LLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVE 151 (1157)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHH
Confidence 4567778888888777762 332211 22334566778888888888887776554332211
Q ss_pred HH-HHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCCh----hhH----------
Q 046354 64 MI-DGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSW---------- 125 (510)
Q Consensus 64 li-~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~---------- 125 (510)
.. ......|+.++|.+.++++.+ | +...+..+...+...|+.++|+..|+++....+.. ..|
T Consensus 152 y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~ 231 (1157)
T PRK11447 152 YWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVS 231 (1157)
T ss_pred HHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCC
Confidence 11 112234778888888888754 3 44567778888888888888888888875431110 000
Q ss_pred -------HH----------------------------------HHHHHHhcCCcchh-------------hHHHHHHHHH
Q 046354 126 -------TT----------------------------------VVLGCAHNGLIAKL-------------EVISWTTMCT 151 (510)
Q Consensus 126 -------~~----------------------------------ll~~~~~~~~~~~a-------------~~~~~~~l~~ 151 (510)
.. ....+...|+++.| +...+..+..
T Consensus 232 ~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~ 311 (1157)
T PRK11447 232 DASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQ 311 (1157)
T ss_pred hhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 00 01112233333333 3344444445
Q ss_pred HHHhcCchHHHHHHHhhCC--CCCh---hHH------------HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHH
Q 046354 152 GLERNAMTKLAREYFVQMP--NKDI---VAW------------NAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAM 211 (510)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~--~~~~---~~~------------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 211 (510)
.+.+.|++++|.+.|++.. .|+. ..+ ......+.+.|++++|...|+++.+ .+...+..+
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~L 391 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGL 391 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5555555555555554443 1111 001 0112234445555555555554443 223344455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHhhhhhhhhHHHHHHHHhC-----------CCcchhhhhhhh
Q 046354 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNE-TTCTSILTSCEGMLENMLAHALAIRLG-----------FEQETSLTYKCT 279 (510)
Q Consensus 212 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~ 279 (510)
...+...|++++|++.|+++.+. .|+. ..+..+...+... ............. .......+..+.
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55555666666666666665542 2221 1111111111100 0000000000000 000011222334
Q ss_pred hhccccccccccChhhHHHHhcccCC--C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC
Q 046354 280 CHYVFWDWGFQLDVNSARLAFERLEA--K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356 (510)
Q Consensus 280 ~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 356 (510)
..+ ...|++++|...|++..+ | +...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...
T Consensus 469 ~~~-----~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 469 EAL-----ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHH-----HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhC
Confidence 445 678889999998888765 3 44567778888889999999999998887642 22222222222233344
Q ss_pred CcHHHHHHHHHHHHHh-------------------------------------h-CCCCCcchhHhHHhHHhhcCChHHH
Q 046354 357 GLVEKGRKTFNLMSRA-------------------------------------Y-GFKPRAEHYSCLADILRRAGQVKEA 398 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~-------------------------------------~-~~~~~~~~~~~l~~~~~~~g~~~~A 398 (510)
++.++|...++.+... . ..++++..+..+...+.+.|++++|
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 4445444444332110 0 1234555666777778888888888
Q ss_pred HHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 399 MRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 399 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+..|++..+..| +...+..++..+...|++++|+..++++.+..|+++..+..++.++...|++++|.++++++..
T Consensus 623 ~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 623 RAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 888887776666 5667777788888888888888888888777787777777788888888888888888887763
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=208.55 Aligned_cols=252 Identities=16% Similarity=0.122 Sum_probs=187.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhh
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 253 (510)
+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|...++++.+.. |+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~------------- 528 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PND------------- 528 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC-------------
Confidence 34455666677777777777777654 3 34556667777777777777777777765522 221
Q ss_pred hhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC----Ch---------hhHHHHHHHHHh
Q 046354 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK----DV---------VSWTAMILAYSN 320 (510)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~---------~~~~~l~~~~~~ 320 (510)
+.....+...+ ...++.++|...++.+... +. ..+..+...+..
T Consensus 529 ------------------~~~~~a~al~l-----~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 529 ------------------PEQVYAYGLYL-----SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred ------------------HHHHHHHHHHH-----HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 11111122222 6678888888888887642 11 112345667888
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHH
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (510)
.|+.++|..+++. .+++...+..+...+...|+.++|...|+.+.+. -+.++..+..++..|...|++++|.+
T Consensus 586 ~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 586 SGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999872 3556667778888899999999999999999974 34467888999999999999999999
Q ss_pred HHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch------hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 401 VVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG------AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 401 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.++...+..| +...+..+..++...|++++|.+++++++...|+++. .+..++.++...|++++|+..|++..
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887766 4556777888888999999999999999987766543 46667899999999999999999887
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=183.47 Aligned_cols=412 Identities=14% Similarity=0.139 Sum_probs=236.0
Q ss_pred CCCChHHHHHHHhhcCC--CC-hhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHH
Q 046354 6 CTGKVKEATKLFDEMSQ--PD-PVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVF 81 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~ 81 (510)
+.|++++|++-....-. |+ ......+-..+.+..+.+.....-....+..| -..+|+.+...+-..|++++|...+
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y 139 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALY 139 (966)
T ss_pred hccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 45666666655544431 21 11112222334444455544443333333333 4566777777777777777777777
Q ss_pred Hhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCc
Q 046354 82 DEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM 158 (510)
Q Consensus 82 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 158 (510)
+.+++ | .+..|..+..++...|+.+.|.+.|.+..+..|+..-.. ..+...+...|+
T Consensus 140 ~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~--------------------s~lgnLlka~Gr 199 (966)
T KOG4626|consen 140 RAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCAR--------------------SDLGNLLKAEGR 199 (966)
T ss_pred HHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhh--------------------cchhHHHHhhcc
Confidence 77754 2 345677777777777777777777777666544432211 112233344566
Q ss_pred hHHHHHHHhhCC--CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 159 TKLAREYFVQMP--NKD-IVAWNAMITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 159 ~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
..+|...+.+.. +|. ...|+.|...+-..|+...|++.|++..+ |+ ...|-.|...|...+.+++|...|.+..
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 666666666655 333 34566666677777777777777776665 32 3456666666777777777776666654
Q ss_pred HCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CC-hh
Q 046354 233 QSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KD-VV 309 (510)
Q Consensus 233 ~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~-~~ 309 (510)
. ..|+ ...++..+...| -.+|.++.|+..+++..+ |+ ..
T Consensus 280 ~--lrpn-------------------------------~A~a~gNla~iY-----yeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 280 N--LRPN-------------------------------HAVAHGNLACIY-----YEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred h--cCCc-------------------------------chhhccceEEEE-----eccccHHHHHHHHHHHHhcCCCchH
Confidence 4 2222 223333444444 566666666666666554 22 34
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHh
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLAD 387 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 387 (510)
.|+.|..++-..|++.+|...|+..... .|+ ....+.|...+...|.+++|..+|..... +.| -...++.|..
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLAS 396 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHH
Confidence 6666666666666666666666666553 333 23556666666666666666666666553 233 2445566666
Q ss_pred HHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHH
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (510)
.|-.+|++++|+..+++.....|+ ...++.+...|...|+...|.+.+.+++..+|.-..++..|+.+|...|+..+|+
T Consensus 397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 666666666666666666655553 3366666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhcccc
Q 046354 467 QVRKKMERRVKKVA 480 (510)
Q Consensus 467 ~~~~~~~~~~~~~p 480 (510)
.-|+...+-.+..|
T Consensus 477 ~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 477 QSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHccCCCCc
Confidence 66665543333333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-20 Score=188.24 Aligned_cols=403 Identities=12% Similarity=0.022 Sum_probs=252.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHcCC
Q 046354 27 SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFKAR 103 (510)
Q Consensus 27 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 103 (510)
.+......+.+.|++++|+..|++.....|+...|..+..+|...|++++|.+.++..++ | +..+|..+..+|...|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 344556667777777777777777777777777777777777777777777777777754 2 3346666777777777
Q ss_pred ChHHHHHHHHhccccCC-ChhhHHHHHHHHHhc-----------CCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-
Q 046354 104 QVDEGRRLFDRMPLKLK-NVVSWTTVVLGCAHN-----------GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP- 170 (510)
Q Consensus 104 ~~~~A~~~~~~m~~~~~-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 170 (510)
++++|+.-|.......+ +......++...... .... +...+..+.. +......+....-+....
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPE--NLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 77777766655433211 111111111100000 0000 0000001111 111111111111111111
Q ss_pred -CCC-hhHHHHHHHH---HHhcCCHHHHHHHHhhCCC-----C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 046354 171 -NKD-IVAWNAMITA---YVDAGNMAQASELFNLMPQ-----R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPN 239 (510)
Q Consensus 171 -~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 239 (510)
.+. ...+..+... ....+++++|.+.|+...+ | +...|+.+...+...|++++|+..+++..+. .|+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~ 363 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPR 363 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Confidence 111 1111111111 1234677788877776653 2 3455777777777888888888888887653 333
Q ss_pred HhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHH
Q 046354 240 ETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMIL 316 (510)
Q Consensus 240 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 316 (510)
.. ..+..+...+ ...|++++|...|++..+ .+...|..+..
T Consensus 364 ~~-------------------------------~~~~~la~~~-----~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 407 (615)
T TIGR00990 364 VT-------------------------------QSYIKRASMN-----LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407 (615)
T ss_pred cH-------------------------------HHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 21 1122222233 667778888887776654 34567888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChH
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 396 (510)
.+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+. .+.++..++.+..++...|+++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence 8999999999999999988753 334556777778888999999999999998863 3446788888999999999999
Q ss_pred HHHHHHhhCCCCCCcH-HH-------HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHH
Q 046354 397 EAMRVVSKMPPHERDH-VV-------LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 397 ~A~~~~~~~~~~~p~~-~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
+|.+.|++.....|+. .. ++..+..+...|++++|...++++++++|++...+..++.++...|++++|+++
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999877665531 11 111222334468999999999999999999888899999999999999999999
Q ss_pred HHHHH
Q 046354 469 RKKME 473 (510)
Q Consensus 469 ~~~~~ 473 (510)
|++..
T Consensus 565 ~e~A~ 569 (615)
T TIGR00990 565 FERAA 569 (615)
T ss_pred HHHHH
Confidence 98876
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-19 Score=184.05 Aligned_cols=459 Identities=14% Similarity=0.066 Sum_probs=260.1
Q ss_pred CCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 046354 6 CTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
..|++++|...|+... +.++.++..|...|.+.|++++|+..+++..+..|+...|..++..+ +++++|..+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 3588888888888886 23566778888888888888888888888888777555554444222 77777777777
Q ss_pred hhcc--CC-hhhHHH----------------------------------------HHHHHHcCCChHHHHHHHHhccccC
Q 046354 83 EIYE--GN-VYSWTS----------------------------------------LISGYFKARQVDEGRRLFDRMPLKL 119 (510)
Q Consensus 83 ~~~~--~~-~~~~~~----------------------------------------li~~~~~~g~~~~A~~~~~~m~~~~ 119 (510)
++.+ |+ ..++.. +.+.|.+.|++++|++++.++.+..
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~ 212 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN 212 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 7733 21 222222 2455555666666666666666653
Q ss_pred CChh-hHHHHHHHHHhc-CCcchh----------hHHHHHHHHHHHHhcCchHHHHHHHhhCC-----CCChhHH-----
Q 046354 120 KNVV-SWTTVVLGCAHN-GLIAKL----------EVISWTTMCTGLERNAMTKLAREYFVQMP-----NKDIVAW----- 177 (510)
Q Consensus 120 ~~~~-~~~~ll~~~~~~-~~~~~a----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~----- 177 (510)
|... -...+..+|... ++ +.+ ++.....++..+.+.|+.++|.++++++. .|+..++
T Consensus 213 pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~ 291 (987)
T PRK09782 213 TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLS 291 (987)
T ss_pred CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHH
Confidence 3222 233333344431 22 111 44555566666677777777777766665 1221111
Q ss_pred -------------------------HHHHHHHHhcCCHHHHHHHHhhCCC------------------------------
Q 046354 178 -------------------------NAMITAYVDAGNMAQASELFNLMPQ------------------------------ 202 (510)
Q Consensus 178 -------------------------~~li~~~~~~g~~~~A~~~~~~~~~------------------------------ 202 (510)
-.++..+.+.++++-+.++...-+.
T Consensus 292 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~ 371 (987)
T PRK09782 292 KYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ 371 (987)
T ss_pred hccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc
Confidence 1113444555555555444321110
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHhhhhhh---hhHH----------------
Q 046354 203 --RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-R-FMPNETTCTSILTSCEGMLE---NMLA---------------- 259 (510)
Q Consensus 203 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~---~~~~---------------- 259 (510)
.+......+.....+.|+.++|.++++..... + ..++......++..+..-.. ...+
T Consensus 372 ~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 451 (987)
T PRK09782 372 EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQ 451 (987)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHH
Confidence 01122222333345667788888888777652 1 12222222223322111000 0000
Q ss_pred ---------HHHH-HHhCC-Cc--chhhhhhhhhhc---------------------------cccccccccChhhHHHH
Q 046354 260 ---------HALA-IRLGF-EQ--ETSLTYKCTCHY---------------------------VFWDWGFQLDVNSARLA 299 (510)
Q Consensus 260 ---------~~~~-~~~~~-~~--~~~~~~~l~~~~---------------------------~~~~~~~~~~~~~a~~~ 299 (510)
.... ...+. ++ +...+..+..++ +.......|++++|...
T Consensus 452 ~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 452 SQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 0000 00011 11 222222222222 00000356666666666
Q ss_pred hcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc-hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC
Q 046354 300 FERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE-ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376 (510)
Q Consensus 300 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (510)
|+++.. ++...+..+..++.+.|++++|...+++..+.+ |+. ..+..+.......|++++|...+++..+. .
T Consensus 532 ~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~ 606 (987)
T PRK09782 532 WQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---A 606 (987)
T ss_pred HHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---C
Confidence 665543 233345555566666777777777777766643 332 22222333334557777787777777753 5
Q ss_pred CCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
|+...+..+..++.+.|++++|...+++..+..| +...+..+...+...|++++|+..++++++..|+++..+..++.+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a 686 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV 686 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6677777778888888888888888888877777 455667777778888888888888888888888888888888888
Q ss_pred HHHcCCChHHHHHHHHHH
Q 046354 456 HAARGEWDEFAQVRKKME 473 (510)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~ 473 (510)
+...|++++|+..+++..
T Consensus 687 l~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 687 NQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 888888888888888665
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=177.22 Aligned_cols=379 Identities=15% Similarity=0.163 Sum_probs=314.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHH-HHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWT-SLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~li~~~ 99 (510)
-..+|+.+...+-..|++++|+..++.+.+..| ....|..+..++...|+.+.|.+.|...++ |+..... .+-..+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 357899999999999999999999999999888 567899999999999999999999999966 4444333 344455
Q ss_pred HcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCC--CC-hhH
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN--KD-IVA 176 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~ 176 (510)
-..|++++|...|.+..+..|.- ..+|..+...+...|+...|++-|++..+ |+ ...
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~f--------------------AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA 254 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCF--------------------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA 254 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCce--------------------eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH
Confidence 56899999999999888865532 23444555566778888999999999883 33 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhh
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 253 (510)
|-.|...|...+.+++|...|.+... | ....+..+...|...|..|-|+..|++..+. .|+
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~-------------- 318 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPN-------------- 318 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCC--------------
Confidence 88899999999999999999987765 4 4577888888999999999999999998763 232
Q ss_pred hhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHH
Q 046354 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRL 330 (510)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 330 (510)
-+..++.+.+++ -..|++.+|.+.+.+... ....+.+.|...|...|.++.|..+
T Consensus 319 -----------------F~~Ay~NlanAL-----kd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 319 -----------------FPDAYNNLANAL-----KDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred -----------------chHHHhHHHHHH-----HhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHH
Confidence 334455555555 778999999999998876 3456788999999999999999999
Q ss_pred HHHHHHcCCCCCc-hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCC
Q 046354 331 FARMLKSGTKPDE-ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPH 408 (510)
Q Consensus 331 ~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (510)
|....+ +.|.. ...+.|...|-+.|+.++|+..+++.. .+.|+ ...|+.+...|-..|+.+.|.+.+.+....
T Consensus 377 y~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 377 YLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 998887 45654 478889999999999999999999998 56786 568899999999999999999999999877
Q ss_pred CCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHH
Q 046354 409 ERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 409 ~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (510)
.|. ....+.|.+.|...|+..+|++.|+..+++.|+.+.+|-.++-++.--.+|.+=
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 884 558899999999999999999999999999999999999998887777777663
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-19 Score=181.80 Aligned_cols=453 Identities=9% Similarity=0.018 Sum_probs=317.2
Q ss_pred ccCCCChHHHHHHHhhcCCCC--hhhHH-HHHHHHHhcCChhhHHHHHHhccccCCChhH-HHHHHHHHHh-cCChhhHH
Q 046354 4 FGCTGKVKEATKLFDEMSQPD--PVSCA-SMITVFLRNHDLPKAEALFRAMPESQRNIVA-ESAMIDGYVK-AGRVDEAR 78 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~--~~~~~-~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~li~~~~~-~~~~~~A~ 78 (510)
|.+.+...++++ .....|+ +.... .+.+.|.+.|++++|++.+.++.+.+|.... ...|..+|.. .++ +.+.
T Consensus 160 y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~ 236 (987)
T PRK09782 160 LAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLL 236 (987)
T ss_pred hhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHH
Confidence 444445555555 2233444 44334 4488999999999999999999998775444 6667778887 467 8888
Q ss_pred HHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc---CCChhhHHHHHHHHH----------------------
Q 046354 79 KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCA---------------------- 133 (510)
Q Consensus 79 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~ll~~~~---------------------- 133 (510)
.+++...+.+...+..+...|.+.|+.++|.++++++... .|+..+|.-++.-+.
T Consensus 237 al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~ 316 (987)
T PRK09782 237 ALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVV 316 (987)
T ss_pred HHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHH
Confidence 8887766678899999999999999999999999999876 344444443332221
Q ss_pred --------hcCCcchh------------------------------------------hHHHHHHHHHHHHhcCchHHHH
Q 046354 134 --------HNGLIAKL------------------------------------------EVISWTTMCTGLERNAMTKLAR 163 (510)
Q Consensus 134 --------~~~~~~~a------------------------------------------~~~~~~~l~~~~~~~~~~~~a~ 163 (510)
..+.++.+ +......+.-.....|+.++|.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~ 396 (987)
T PRK09782 317 GATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAA 396 (987)
T ss_pred HHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 11211111 2222223333345567777777
Q ss_pred HHHhhCCC--C----ChhHHHHHHHHHHhcCC---HHHHHHHHh-------------------------hCCC---C--C
Q 046354 164 EYFVQMPN--K----DIVAWNAMITAYVDAGN---MAQASELFN-------------------------LMPQ---R--N 204 (510)
Q Consensus 164 ~~~~~~~~--~----~~~~~~~li~~~~~~g~---~~~A~~~~~-------------------------~~~~---~--~ 204 (510)
++++...+ + +......++..|.+.+. ..++..+-. .... + +
T Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 476 (987)
T PRK09782 397 DLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYD 476 (987)
T ss_pred HHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCC
Confidence 77777662 1 12233466677777665 333333311 1111 2 4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHh---hhhhhhhHHHHHHHHhCCCcchhhhhhhhhh
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCH 281 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (510)
...|..+..++.. +++++|...+.+.... .|+......+...+ .+..........+ ...++....+..+...
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka--~~~~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKI--SLHDMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHH--hccCCCcHHHHHHHHH
Confidence 5667777777766 7888899977777663 35544322222221 2222222222222 2223444445566666
Q ss_pred ccccccccccChhhHHHHhcccCCCChhhHHH---HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc
Q 046354 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTA---MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL 358 (510)
Q Consensus 282 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 358 (510)
+ ...|+.++|...+++..+.++...+. +.....+.|++++|...+++..+. .|+...+..+...+.+.|+
T Consensus 552 l-----l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 552 A-----QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHN 624 (987)
T ss_pred H-----HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCC
Confidence 6 88999999999999887744333333 333444559999999999999974 5778889999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 046354 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
.++|...+++.... .+.++..+..+..++...|++++|+..+++..+..| +...+..+..++...|++++|+..+++
T Consensus 625 ~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 625 VPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999874 344677888899999999999999999999987778 667899999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 438 LIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 438 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++++.|++.......++...+..+++.|.+-+++.-
T Consensus 703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998887544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-19 Score=180.48 Aligned_cols=399 Identities=10% Similarity=-0.014 Sum_probs=291.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 99 (510)
++....-.+......|+.++|++++.......| +...+..+..++...|++++|..+++...+ | +...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 333344456667789999999999999886434 555788888999999999999999999744 3 456677888888
Q ss_pred HcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhH
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVA 176 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~ 176 (510)
...|++++|...+++..+..|+... +..+..++...|+.++|...++++. +.+...
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~---------------------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~ 152 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN---------------------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQY 152 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH---------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999998886554321 3334556677788888888888887 345556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CCh------hhHHHHHHHHHh-----cCCh---HHHHHHHHHHHHC-CCCCCH
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQ-RNV------WTWNAMIDRYAR-----NGPE---GAAMKLLNLMFQS-RFMPNE 240 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~-----~~~~---~~A~~~~~~m~~~-g~~p~~ 240 (510)
+..+..++...|..++|++.++.... |+. .....++..... .+++ ++|+..++.+.+. ...|+.
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 67778888888999999999988776 221 112222222221 2233 6778888887653 222322
Q ss_pred hh-HHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCC---h-hhHHHHH
Q 046354 241 TT-CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD---V-VSWTAMI 315 (510)
Q Consensus 241 ~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~l~ 315 (510)
.. +.... ...+..+ ...|+.++|+..|+++.+.+ + ..-..+.
T Consensus 233 ~~~~~~a~----------------------------~d~l~~L-----l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la 279 (765)
T PRK10049 233 TADYQRAR----------------------------IDRLGAL-----LARDRYKDVISEYQRLKAEGQIIPPWAQRWVA 279 (765)
T ss_pred chHHHHHH----------------------------HHHHHHH-----HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 11 11000 0001111 45689999999999988732 1 1223357
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCc-----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC------------CC
Q 046354 316 LAYSNHGHGFQVFRLFARMLKSGTKPDE-----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK------------PR 378 (510)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------------~~ 378 (510)
.+|...|++++|+..|+++... .|.. .....+..++...|++++|.++++.+... .+ |+
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCCCCCC
Confidence 7899999999999999998764 2322 34566677788999999999999999864 22 12
Q ss_pred ---cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 379 ---AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 379 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
...+..++..+...|++++|++.++++....| +...+..+...+...|++++|++.++++++..|+++..+..++.
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 12345677888999999999999999987777 66788889999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 455 VHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.+...|++++|+.+++.+.+..+..|
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999985555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-20 Score=175.23 Aligned_cols=292 Identities=13% Similarity=0.079 Sum_probs=234.0
Q ss_pred HHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC------hhhHHHHHHHHHhcC
Q 046354 150 CTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-RN------VWTWNAMIDRYARNG 219 (510)
Q Consensus 150 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~~ 219 (510)
...+...|+++.|.+.|+++. +.+..++..+...+...|++++|..+++.+.. ++ ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344567789999999999998 34556888999999999999999999998876 22 256788899999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHH
Q 046354 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299 (510)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 299 (510)
++++|..+|+++.+.. +++..++..+ +..+ .+.|++++|.+.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~l--------------------------------a~~~-----~~~g~~~~A~~~ 163 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQL--------------------------------LEIY-----QQEKDWQKAIDV 163 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHH--------------------------------HHHH-----HHhchHHHHHHH
Confidence 9999999999997642 1223333333 3344 888999999999
Q ss_pred hcccCCCC--------hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 300 FERLEAKD--------VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 300 ~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
++.+.+.+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99886521 1245667778889999999999999998753 33455777888899999999999999999986
Q ss_pred hhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 372 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
. +-.....++..++.+|.+.|++++|...++++.+..|+...+..++..+.+.|++++|..+++++++..|+++ .+..
T Consensus 243 ~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~ 320 (389)
T PRK11788 243 Q-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHR 320 (389)
T ss_pred H-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHH
Confidence 4 2122245678899999999999999999999987788888788889999999999999999999999999875 4555
Q ss_pred HHHHHHH---cCCChHHHHHHHHHH-Hhhccccce
Q 046354 452 SANVHAA---RGEWDEFAQVRKKME-RRVKKVASF 482 (510)
Q Consensus 452 l~~~~~~---~g~~~~A~~~~~~~~-~~~~~~p~~ 482 (510)
+...+.. .|+.+++..++++|. +++...|..
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 5555443 569999999999999 888888875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-18 Score=174.51 Aligned_cols=254 Identities=12% Similarity=-0.021 Sum_probs=158.9
Q ss_pred HHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHH
Q 046354 152 GLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~ 225 (510)
.+...|++++|.+.++++. +.+...+..+..++...|++++|...++.+.. |+ ...+..+ ..+...|++++|.
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHH
Confidence 3334444444444444443 22344555566666666666666666654432 22 2222222 2355566666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC
Q 046354 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305 (510)
Q Consensus 226 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 305 (510)
..++.+.+....++......+. ..+ ...|++++|...|++...
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~--------------------------------~~l-----~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAV--------------------------------DTL-----CAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHH--------------------------------HHH-----HHCCCHHHHHHHHHHHHh
Confidence 6666654432212211111111 111 455666666666665544
Q ss_pred ---CChhhHHHHHHHHHhcCChhh----HHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC
Q 046354 306 ---KDVVSWTAMILAYSNHGHGFQ----VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR 378 (510)
Q Consensus 306 ---~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 378 (510)
.+...+..+...|...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+
T Consensus 241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~ 317 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDL 317 (656)
T ss_pred cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 234566777888888888875 788888888742 334457778888888889999999999888864 2334
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV-LGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
+..+..+..++.+.|++++|...++++.+..|+... +..+..++...|+.++|...|+++++..|++.
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 566777888888899999999999888877776544 33355677888999999999999988888764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-18 Score=173.10 Aligned_cols=277 Identities=12% Similarity=-0.028 Sum_probs=219.3
Q ss_pred cCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHH
Q 046354 156 NAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLN 229 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~ 229 (510)
.|+++.|.+.++++. +.+...+..+...+...|++++|...+++... | +...+..+...+...|++++|...++
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 344444444444443 23456778888999999999999999999876 3 56788899999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC---
Q 046354 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK--- 306 (510)
Q Consensus 230 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 306 (510)
.+......+....+. + . .+ ...|++++|...++.+.+.
T Consensus 169 ~~~~~~P~~~~a~~~-~-~--------------------------------~l-----~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 169 TQAQEVPPRGDMIAT-C-L--------------------------------SF-----LNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHhCCCCHHHHHH-H-H--------------------------------HH-----HHcCCHHHHHHHHHHHHhcCCC
Confidence 886643322221111 1 1 12 6789999999999887652
Q ss_pred -ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHH----HHHHHHHHHHhhCCCCCcch
Q 046354 307 -DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK----GRKTFNLMSRAYGFKPRAEH 381 (510)
Q Consensus 307 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~ 381 (510)
+...+..+..++...|++++|...+++..... +.+...+..+...+...|++++ |...++++.+. .+.+...
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a 286 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRI 286 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHH
Confidence 23344556678899999999999999999863 4455677788888999999885 89999999864 3446778
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
+..+...+.+.|++++|...+++.....| +...+..+...+...|++++|...|+++.+..|+++..+..++.++...|
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAG 366 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC
Confidence 88999999999999999999999987777 45577788889999999999999999999999998777777888999999
Q ss_pred CChHHHHHHHHHHH
Q 046354 461 EWDEFAQVRKKMER 474 (510)
Q Consensus 461 ~~~~A~~~~~~~~~ 474 (510)
++++|+..|++..+
T Consensus 367 ~~deA~~~l~~al~ 380 (656)
T PRK15174 367 KTSEAESVFEHYIQ 380 (656)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998773
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-18 Score=172.98 Aligned_cols=385 Identities=9% Similarity=0.006 Sum_probs=285.4
Q ss_pred cccCCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhhHHHHHHhccccCCC-hhHHHHHHHHHHhcCChhhHH
Q 046354 3 QFGCTGKVKEATKLFDEMSQ---PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN-IVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~ 78 (510)
+....|+.++|++++....+ .+...+..+...+...|++++|..+|++..+..|+ ...+..+..++...|++++|.
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34568999999999999873 34456899999999999999999999999888674 666778889999999999999
Q ss_pred HHHHhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Q 046354 79 KVFDEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER 155 (510)
Q Consensus 79 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~ 155 (510)
..++++.+ | +.. +..+...+...|+.++|...++++.+..|+... .+..+...+..
T Consensus 104 ~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~--------------------~~~~la~~l~~ 162 (765)
T PRK10049 104 VKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ--------------------YPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHH
Confidence 99999955 3 445 888888999999999999999999997665422 22223445556
Q ss_pred cCchHHHHHHHhhCCC-CCh------hHHHHHHHHHHh-----cCCH---HHHHHHHhhCCC-----CChhh-H----HH
Q 046354 156 NAMTKLAREYFVQMPN-KDI------VAWNAMITAYVD-----AGNM---AQASELFNLMPQ-----RNVWT-W----NA 210 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~~-~~~------~~~~~li~~~~~-----~g~~---~~A~~~~~~~~~-----~~~~~-~----~~ 210 (510)
.+..+.|.+.++.... |+. ......+..... .+++ ++|+..++.+.+ |+... + ..
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 6777888888877663 221 012222222221 2234 677777776653 22211 1 11
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccc
Q 046354 211 MIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289 (510)
Q Consensus 211 li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (510)
.+..+...|++++|+..|+.+...+.. |+..... +...| ..
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~---------------------------------la~~y-----l~ 284 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW---------------------------------VASAY-----LK 284 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH---------------------------------HHHHH-----Hh
Confidence 133456779999999999999876532 3221111 11223 77
Q ss_pred ccChhhHHHHhcccCCCC-------hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-----------CCCc---hhHHH
Q 046354 290 QLDVNSARLAFERLEAKD-------VVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-----------KPDE---ITFVG 348 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~ 348 (510)
.|++++|+..|+++.+.+ ...+..+..++...|++++|..+++.+..... .|+. ..+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 899999999999876522 23455667788999999999999999987520 1232 23445
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCC
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGD 427 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 427 (510)
+...+...|+.++|.+.++++... .+.++..+..++..+...|++++|++.+++..+..|+ ...+..++..+...|+
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 667788899999999999999874 4557888899999999999999999999999988885 5677777788899999
Q ss_pred HHHHHHHHHHHHhcCCCCchh
Q 046354 428 VRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~ 448 (510)
+++|+.+++++++..|+++.+
T Consensus 443 ~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 443 WRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999744
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-19 Score=166.85 Aligned_cols=230 Identities=13% Similarity=0.061 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 251 (510)
..+..++..|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..++......
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------ 181 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH------ 181 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH------
Confidence 3566777778888888888888887765 4566778888888888888888888888876543322111000
Q ss_pred hhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C-ChhhHHHHHHHHHhcCChhhHH
Q 046354 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-DVVSWTAMILAYSNHGHGFQVF 328 (510)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~ 328 (510)
.+..+...+ ...|++++|...|+++.+ | +...+..+...|.+.|++++|.
T Consensus 182 ----------------------~~~~la~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 182 ----------------------FYCELAQQA-----LARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred ----------------------HHHHHHHHH-----HhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 111222333 667888888888887764 2 3457778889999999999999
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC
Q 046354 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408 (510)
Q Consensus 329 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (510)
++++++.+.+......++..++.++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++.+.
T Consensus 235 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 235 EALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999987532222456788899999999999999999999864 577777788999999999999999999998878
Q ss_pred CCcHHHHHHHHHHHHh---hCCHHHHHHHHHHHHh
Q 046354 409 ERDHVVLGALLGACRL---HGDVRMADYIGERLIE 440 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 440 (510)
.|+...++.++..+.. .|+..++..+++++++
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8999999988887664 5688899999998883
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-17 Score=164.09 Aligned_cols=425 Identities=12% Similarity=0.014 Sum_probs=304.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCCCh--hHHHHHHHHHHhcCChhhHHHHHHhhccCChh-hHHHH--HHHHHcC
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQRNI--VAESAMIDGYVKAGRVDEARKVFDEIYEGNVY-SWTSL--ISGYFKA 102 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~ 102 (510)
|...| ...+.|+++.|+..|++..+..|+. ..+ .++..+...|+.++|+..+++...|+.. .+..+ ...+...
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 44444 3569999999999999999988875 244 8888899999999999999999876443 33344 5578888
Q ss_pred CChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCChhHHHHH
Q 046354 103 RQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKDIVAWNAM 180 (510)
Q Consensus 103 g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l 180 (510)
|++++|+++|+++.+..|+.. ..+..++..+...++.++|.+.++++. .|+...+..+
T Consensus 116 gdyd~Aiely~kaL~~dP~n~--------------------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l 175 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNP--------------------DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL 175 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCH--------------------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH
Confidence 999999999999999755532 222334566777889999999999988 4554555444
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH------HHHHHHh-
Q 046354 181 ITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC------TSILTSC- 250 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~------~~ll~~~- 250 (510)
+..+...++..+|++.++++.+ | +...+..+..++.+.|-...|+++.++-.+. +.|...-. ...+...
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~ 254 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAV 254 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcc
Confidence 4444446666669999998876 4 5667788888999999988888776653211 11111111 1111100
Q ss_pred -h------hhhhhhHHHHH----HHHhCC-Ccchhh-hh---hhhhhccccccccccChhhHHHHhcccCCC----Chhh
Q 046354 251 -E------GMLENMLAHAL----AIRLGF-EQETSL-TY---KCTCHYVFWDWGFQLDVNSARLAFERLEAK----DVVS 310 (510)
Q Consensus 251 -~------~~~~~~~~~~~----~~~~~~-~~~~~~-~~---~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 310 (510)
. +.......... ....+. ++.... .. -.+.++ ...|+..++++.|+.+..+ ...+
T Consensus 255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL-----~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL-----LVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 0 00000111111 111121 221111 22 223334 7889999999999999863 3346
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhC----------C
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSG-----TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYG----------F 375 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~ 375 (510)
-..+.++|...+++++|+.+|+.+.... .+++......|.-++...+++++|..+++.+.+... -
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 6778999999999999999999997643 122333357789999999999999999999987311 0
Q ss_pred CCCc---chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 376 KPRA---EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 376 ~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
.|++ ..+..++..+.-.|++.+|++.++++....| |......+...+...|.+.+|++.++.+..++|++..+...
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 1222 2234567778899999999999999987777 78889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 452 SANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.+.++...|+|.+|..+.+.+....|..|
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999877754344333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-17 Score=161.17 Aligned_cols=373 Identities=8% Similarity=-0.080 Sum_probs=246.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHHHHHHHHHcCCChHHHHHHHHhccccCC-ChhhHHHHHHHHHhcC
Q 046354 60 AESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-NVVSWTTVVLGCAHNG 136 (510)
Q Consensus 60 ~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ll~~~~~~~ 136 (510)
.+......+.+.|++++|...|++.++ |+...|..+..+|.+.|++++|++.+++..+..| +...|..+..++...|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 355677888999999999999999854 7778899999999999999999999999998744 4445666666666666
Q ss_pred CcchhhHHHHH-------------HHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046354 137 LIAKLEVISWT-------------TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQR 203 (510)
Q Consensus 137 ~~~~a~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 203 (510)
+++++-...-. .++.-+........+...++.- +++...+..+.. |....+......-+....+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccccc
Confidence 65554110000 0000000000011111111111 111112221111 11111111111111111110
Q ss_pred Ch---hhHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhh
Q 046354 204 NV---WTWNAMIDR---YARNGPEGAAMKLLNLMFQSR-FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTY 276 (510)
Q Consensus 204 ~~---~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (510)
+. ..+..+... ....+++++|.+.|++..+.+ ..|+.. ..+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a-------------------------------~a~~ 335 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA-------------------------------IALN 335 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH-------------------------------HHHH
Confidence 10 111111111 122467888888888877654 223221 2233
Q ss_pred hhhhhccccccccccChhhHHHHhcccCC--CC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc
Q 046354 277 KCTCHYVFWDWGFQLDVNSARLAFERLEA--KD-VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353 (510)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 353 (510)
.+...+ ...|++++|...|++... |+ ...|..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 336 ~lg~~~-----~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 336 LRGTFK-----CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHH-----HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 333444 778999999999998876 33 4578888899999999999999999998753 44567888888899
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~ 432 (510)
...|++++|...|++..+. .+.+...+..+..++.+.|++++|+..+++..+..| +...++.+...+...|++++|+
T Consensus 410 ~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999999863 334567778889999999999999999999887767 5678899999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHH-------HHHHHHHcCCChHHHHHHHHHH
Q 046354 433 YIGERLIELQPSSSGAYVL-------SANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|++++++.|.....+.. ....+...|++++|.+++++..
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999875443221 1223444799999999999765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-15 Score=151.30 Aligned_cols=415 Identities=8% Similarity=0.014 Sum_probs=292.0
Q ss_pred ccCCCChHHHHHHHhhcCC--CChh-hHHHHHHHHHhcCChhhHHHHHHhccccCCChh-HHHH--HHHHHHhcCChhhH
Q 046354 4 FGCTGKVKEATKLFDEMSQ--PDPV-SCASMITVFLRNHDLPKAEALFRAMPESQRNIV-AESA--MIDGYVKAGRVDEA 77 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~--li~~~~~~~~~~~A 77 (510)
..+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++... |+.. .+.. +...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999999984 4431 223888888899999999999999994 5333 3333 35688888999999
Q ss_pred HHHHHhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHH
Q 046354 78 RKVFDEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE 154 (510)
Q Consensus 78 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~ 154 (510)
.++++++.+ | +...+..++..+...++.++|++.++++....|+...+ +..++.. .
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~--l~layL~-------------------~ 180 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY--MTLSYLN-------------------R 180 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH--HHHHHHH-------------------H
Confidence 999999965 3 45667788889999999999999999999876664444 2223322 2
Q ss_pred hcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhH------HHHHHHH-----Hh
Q 046354 155 RNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTW------NAMIDRY-----AR 217 (510)
Q Consensus 155 ~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~------~~li~~~-----~~ 217 (510)
..++..+|++.++++. +.+...+..++.+..+.|-...|.++..+-+. +....+ ..++..- ..
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 2344444777777776 33566677778888888888888877776554 111000 1111100 01
Q ss_pred cCCh---HHHHHHHHHHHH-CCCCCCH-hhHHH-H---HHHh---hhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccc
Q 046354 218 NGPE---GAAMKLLNLMFQ-SRFMPNE-TTCTS-I---LTSC---EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285 (510)
Q Consensus 218 ~~~~---~~A~~~~~~m~~-~g~~p~~-~~~~~-l---l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (510)
..++ +.|+.-++.+.. .+..|.. ..|.. . +.++ ....+....+..+...+.+....+-..+..+|
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday--- 337 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY--- 337 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH---
Confidence 1222 334444555443 1222322 22211 1 1122 23333344444445555566667778888888
Q ss_pred ccccccChhhHHHHhcccCCC---------ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-----------CCCc--
Q 046354 286 DWGFQLDVNSARLAFERLEAK---------DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-----------KPDE-- 343 (510)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~-- 343 (510)
...++.++|..+|..+..+ +......|.-+|...+++++|..+++.+.+.-. .||.
T Consensus 338 --l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 338 --IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred --HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 9999999999999988552 222356788999999999999999999997311 1222
Q ss_pred -hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHH
Q 046354 344 -ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGA 421 (510)
Q Consensus 344 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 421 (510)
..+..++..+...|+..+|++.++++.. .-|-|..+...+.+.+...|.+.+|++.++......| +..+....+.+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 1234456778889999999999999976 4556899999999999999999999999988877778 55577788888
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 422 CRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
+...|++.+|..+.+.+.+..|+++..
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999999999999999999744
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-15 Score=145.98 Aligned_cols=416 Identities=12% Similarity=0.026 Sum_probs=238.8
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhccCC------hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChh--hHHHH
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGN------VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV--SWTTV 128 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~l 128 (510)
++...+.|...|.-.|++..+..+...+...+ ...|-.+.++|-..|++++|...|.+..+..+|.. .+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 44555555555555566666666555554322 12355555666666666666666655555433332 23334
Q ss_pred HHHHHhcCCcchh-------------hHHHHHHHHHHHHhcC----chHHHHHHHhhCC---CCChhHHHHHHHHHHhcC
Q 046354 129 VLGCAHNGLIAKL-------------EVISWTTMCTGLERNA----MTKLAREYFVQMP---NKDIVAWNAMITAYVDAG 188 (510)
Q Consensus 129 l~~~~~~~~~~~a-------------~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g 188 (510)
...+...|+.+.+ ...+...+...|...+ ..+.|..++.+.. +.|...|-.+...+-..+
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence 4445555555444 2333333333333332 3344444444444 223334444433333222
Q ss_pred CHHHHHHHHhhCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHh-----hHHHHHHHh--
Q 046354 189 NMAQASELFNLMP--------QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS---RFMPNET-----TCTSILTSC-- 250 (510)
Q Consensus 189 ~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~-----~~~~ll~~~-- 250 (510)
- ..++.+|.... ...+...|.+...+...|++++|...|...... ...+|.. |..--+..+
T Consensus 429 ~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 429 P-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred h-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 2 11133332221 245566777888888888888888888887665 2333332 111112211
Q ss_pred --hhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChh
Q 046354 251 --EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGF 325 (510)
Q Consensus 251 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 325 (510)
+........+..+.+.. +.-...+-.++.+. ...+...+|...++.+.. .++..|+.+...|.....+.
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma-----~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMA-----RDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHH-----HhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 12222222222222211 12222233333333 445677788888887765 56677777777888888888
Q ss_pred hHHHHHHHHHHc-CCCCCchhHHHHHHhcC------------cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc
Q 046354 326 QVFRLFARMLKS-GTKPDEITFVGVLSDCS------------HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392 (510)
Q Consensus 326 ~A~~~~~~m~~~-g~~p~~~~~~~li~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (510)
.|.+-|....+. ...+|..+...|.+.|. ..+..+.|+++|.++.+ .-+-|...-|-+.-+++..
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhc
Confidence 888766665543 12345555555544332 12345677777777776 3344777778888888999
Q ss_pred CChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-C-CCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 393 GQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIEL-Q-PSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 393 g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
|++.+|..+|.+..+... ...+|..+..+|...|++..|+++|+...+. . .+++.....|+.++.+.|++.+|.+.+
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999988875433 5678888999999999999999999988833 3 345566888999999999999998888
Q ss_pred HHHHHhhccccc
Q 046354 470 KKMERRVKKVAS 481 (510)
Q Consensus 470 ~~~~~~~~~~p~ 481 (510)
.......+..|.
T Consensus 740 l~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 740 LKARHLAPSNTS 751 (1018)
T ss_pred HHHHHhCCccch
Confidence 766644444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-15 Score=144.44 Aligned_cols=441 Identities=16% Similarity=0.110 Sum_probs=312.3
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHhccccC----CChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CC--hhhHHH
Q 046354 23 PDPVSCASMITVFLRNHDLPKAEALFRAMPESQ----RNIVAESAMIDGYVKAGRVDEARKVFDEIYE--GN--VYSWTS 94 (510)
Q Consensus 23 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~ 94 (510)
.|+...+.|.+-|...|+++.++.+...+.... --...|--+.++|-..|++++|...|....+ ++ +..+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 467777888888888899999998888887652 1234566788999999999999999988865 33 345567
Q ss_pred HHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCC----cchh-------------hHHHHHHHHHHHHhc
Q 046354 95 LISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGL----IAKL-------------EVISWTTMCTGLERN 156 (510)
Q Consensus 95 li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~----~~~a-------------~~~~~~~l~~~~~~~ 156 (510)
|...+++.|+++.+...|+.+.+. +.+..|...+...|+..+. .+.+ +...|-.+...+...
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 889999999999999999999887 4456666666666766641 1222 666777777777655
Q ss_pred CchH------HHHHHHhhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCh------hhHHHHHHHHH
Q 046354 157 AMTK------LAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-------RNV------WTWNAMIDRYA 216 (510)
Q Consensus 157 ~~~~------~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~ 216 (510)
.-+. .|..++.... ++.+...|.+...+...|++.+|...|..... ++. .+-..+...+-
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 4433 3443333322 67788999999999999999999999987653 222 22334566677
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhh-HHHHHH--HHhCCCcchhhhhhhhhhccccccccccCh
Q 046354 217 RNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM-LAHALA--IRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293 (510)
Q Consensus 217 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (510)
..++++.|.+.|..+... .|+-...-.-+.+........ .....+ .-.....++.++..+.+.+ .+...+
T Consensus 508 ~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~-----l~k~~~ 580 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH-----LKKSEW 580 (1018)
T ss_pred hhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH-----Hhhhhh
Confidence 788999999999999773 344333222222111110100 111111 1233455667777777777 777777
Q ss_pred hhHHHHhcccCC-----CChhhHHHHHHHHHh------------cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC
Q 046354 294 NSARLAFERLEA-----KDVVSWTAMILAYSN------------HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356 (510)
Q Consensus 294 ~~a~~~~~~~~~-----~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 356 (510)
..|..-|..+.+ +|+.+.-.|...|.+ .+..++|+++|.+..... +-|...-+.+.-.++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 777775554443 344444444444432 245678999999888753 56667777888888999
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC---CCcHHHHHHHHHHHHhhCCHHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH---ERDHVVLGALLGACRLHGDVRMADY 433 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~A~~ 433 (510)
|++..|..+|....+. ......+|-.+..+|..+|++-.|+++|+...+. ..+....+.|..++...|.+.+|.+
T Consensus 660 g~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred cCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999885 3346678889999999999999999999987643 4478889999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHH-------------------cCCChHHHHHHHHHH
Q 046354 434 IGERLIELQPSSSGAYVLSANVHAA-------------------RGEWDEFAQVRKKME 473 (510)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~A~~~~~~~~ 473 (510)
.+..++...|.++.....++.+..+ .+..+.|.++|..|.
T Consensus 738 ~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998886666655333 335667778888777
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-16 Score=135.75 Aligned_cols=417 Identities=12% Similarity=0.052 Sum_probs=276.0
Q ss_pred cccCCCChHHHHHHHhhcC--CCC------hhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCCh
Q 046354 3 QFGCTGKVKEATKLFDEMS--QPD------PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV 74 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~--~~~------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 74 (510)
.+.+...+..|++.++... -|+ ....+.+...+.+.|.++.|+..|+...+..|+..+--.|+-++..-|+.
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ 325 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDA 325 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcH
Confidence 3556677888888887665 232 23344455567788888888888888888778877655566666667888
Q ss_pred hhHHHHHHhhcc----CC--------hhhHHHHHHHHHcC---------C--ChHHHHHHHHhcccc--CCChh-hHHHH
Q 046354 75 DEARKVFDEIYE----GN--------VYSWTSLISGYFKA---------R--QVDEGRRLFDRMPLK--LKNVV-SWTTV 128 (510)
Q Consensus 75 ~~A~~~~~~~~~----~~--------~~~~~~li~~~~~~---------g--~~~~A~~~~~~m~~~--~~~~~-~~~~l 128 (510)
++..+.|.+|+. +| ...-..|+.-..++ + +.++++-.--++..- .|+-. -+.--
T Consensus 326 ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc 405 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC 405 (840)
T ss_pred HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH
Confidence 888888888833 11 01112222222221 1 112222211122110 12211 11111
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHH----HHHH-HHh-cCCHHHHHHHHhhCCC
Q 046354 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA----MITA-YVD-AGNMAQASELFNLMPQ 202 (510)
Q Consensus 129 l~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----li~~-~~~-~g~~~~A~~~~~~~~~ 202 (510)
+.....+...+.+. ..--.-.-.+.+.|+++.|.+++.-....|..+-++ |-.. |.+ ..++.+|.+.-+....
T Consensus 406 le~lk~s~~~~la~-dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln 484 (840)
T KOG2003|consen 406 LESLKASQHAELAI-DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN 484 (840)
T ss_pred HHHHHHhhhhhhhh-hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc
Confidence 12111111111111 111122335778999999999988777555443322 2222 222 3357777777666554
Q ss_pred C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhh
Q 046354 203 R---NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279 (510)
Q Consensus 203 ~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (510)
. |......-...-..+|++++|.+.|++.+.....-....|+.-+.+
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~------------------------------ 534 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA------------------------------ 534 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH------------------------------
Confidence 2 2222222223345689999999999999765433333333333321
Q ss_pred hhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC
Q 046354 280 CHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356 (510)
Q Consensus 280 ~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 356 (510)
-..|++++|...|-++.. .+....--+...|-...++..|++++.+.... ++-|+.....|...|-+.
T Consensus 535 --------e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 535 --------EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred --------HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 678999999999987754 56677777888899999999999999777654 566778899999999999
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHH-hhCCHHHHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR-LHGDVRMADYIG 435 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~A~~~~ 435 (510)
|+-.+|.+.+-.-.+ -++.+..+...|..-|....-+++|+..|++..-.+|+..-|..++..|. +.|++.+|..+|
T Consensus 606 gdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999988766654 56779999999999999999999999999998756999999999987765 569999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 436 ERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 436 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
+...+..|.+......|..++...|-
T Consensus 684 k~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 684 KDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999888888888877774
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-13 Score=122.26 Aligned_cols=468 Identities=14% Similarity=0.108 Sum_probs=316.8
Q ss_pred CCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCCh-hHHHHHHHHHHhcCChhhHHHHHH
Q 046354 7 TGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI-VAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 7 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
++++..|.++|+... ..+...|..-+.+-.++.....|..+++.....-|.+ ..|-..+.+=-..|++..|+++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 467788999999998 4677888888999999999999999999998876754 455556666667899999999999
Q ss_pred hhc--cCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh----------------hHH
Q 046354 83 EIY--EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------------EVI 144 (510)
Q Consensus 83 ~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a----------------~~~ 144 (510)
... +|+..+|++.|+.-.+.+..+.|..+|++..-..|++.+|.-..+---+.|....+ ...
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 985 59999999999999999999999999999877779999998888777777776655 444
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhhCC---CCC--hhHHHHHHHHHHhcCCHHHHHHHH--------hhCCC---CChhhH
Q 046354 145 SWTTMCTGLERNAMTKLAREYFVQMP---NKD--IVAWNAMITAYVDAGNMAQASELF--------NLMPQ---RNVWTW 208 (510)
Q Consensus 145 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~---~~~~~~ 208 (510)
.+.+.+..-.++..++.|.-+|+-.. +.+ ...|..+...--+.|+-....... +.+.. -|-.+|
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW 325 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW 325 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH
Confidence 55555555666777777777777665 222 345666665555566644433332 22222 355677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-Hhh----HHHHHH--Hh------hhhhhhhHHHHHHHHhCCCcchhhh
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPN-ETT----CTSILT--SC------EGMLENMLAHALAIRLGFEQETSLT 275 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~----~~~ll~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (510)
-..+..-...|+.+...++|+..... ++|- ... |.-+-- ++ .+......++..+.+ -++....++
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtF 403 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTF 403 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchH
Confidence 77888888889999999999998765 4442 111 111111 11 123334444444444 233333444
Q ss_pred hhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc
Q 046354 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC 353 (510)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 353 (510)
..+--+| +....++.++..|.+++..... |...+|...|..-.+.++++.+..++++.++-+ +-|..+|......-
T Consensus 404 aKiWlmy-A~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 404 AKIWLMY-AQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHH-HHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHH
Confidence 3333333 1112567788888888887765 666778878888888888888888888888764 45566777776666
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHH-----hhC--
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACR-----LHG-- 426 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-----~~~-- 426 (510)
...|+.+.|..+|+-+.....+.-....|.+.|+.-...|.++.|..+++++.+..+...+|-++...-. ..|
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~ 561 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDED 561 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccc
Confidence 7788888888888888764222223344556666667788888888888888766666667766665433 233
Q ss_pred ---------CHHHHHHHHHHHH----hcCCCCchh--HHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 427 ---------DVRMADYIGERLI----ELQPSSSGA--YVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 427 ---------~~~~A~~~~~~~~----~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
+...|..+|+++. +..|..... +..+.+.-...|...+...+-.+|.+.+++
T Consensus 562 ~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKK 628 (677)
T KOG1915|consen 562 LAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKK 628 (677)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHh
Confidence 5677888888876 233322111 223333344566666666666666544444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.5e-14 Score=126.08 Aligned_cols=181 Identities=19% Similarity=0.202 Sum_probs=138.5
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcCcCCcHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCSHAGLVEKGR 363 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~ 363 (510)
....+.++....|.+..+ .|+.+|..-.+.+.-.+++++|..=|++.+.. .|+ ...|..+.-+.-+.+.++++.
T Consensus 371 ~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m 448 (606)
T KOG0547|consen 371 ADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESM 448 (606)
T ss_pred hhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555443 34556666666666778899999999988874 444 345666655566888999999
Q ss_pred HHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-------HH--HHHHHHHHHHhhCCHHHHHHH
Q 046354 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-------HV--VLGALLGACRLHGDVRMADYI 434 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~--~~~~l~~~~~~~~~~~~A~~~ 434 (510)
..|++.++ .++..+++|+.....+..+++++.|.+.|+...++.|. .. +-..++. +.-.+++..|+.+
T Consensus 449 ~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~L 525 (606)
T KOG0547|consen 449 KTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENL 525 (606)
T ss_pred HHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHH
Confidence 99999988 57778899999999999999999999999988877664 11 1122222 2234899999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 526 l~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=132.15 Aligned_cols=325 Identities=15% Similarity=0.142 Sum_probs=225.3
Q ss_pred HHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--
Q 046354 94 SLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-- 170 (510)
Q Consensus 94 ~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 170 (510)
...+.+...|++++|.+++.++++. +.+.. .|.++...|...|+.+++...+-.+.
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---------------------ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPI---------------------AYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchh---------------------hHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3334444458888888888888876 33333 44444555555555555555443322
Q ss_pred -CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 046354 171 -NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246 (510)
Q Consensus 171 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 246 (510)
+.|...|..+.....+.|++++|.-.|.+..+ ++....---+..|-+.|+...|..-|.++.+...+.|..-+..+
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 56667888888888899999999999988876 33344444566788889999999999988775432222222222
Q ss_pred HHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-----CChhhHHHHHHHHHhc
Q 046354 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-----KDVVSWTAMILAYSNH 321 (510)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~ 321 (510)
+... +..+ ...++.+.|.+.++.... -+...+++++..|...
T Consensus 283 i~~~----------------------------~~~~-----~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 283 IRRV----------------------------AHYF-----ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN 329 (895)
T ss_pred HHHH----------------------------HHHH-----HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence 2211 1111 333344566666555443 2334688888999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCchh----------------------HH----HHHHhcCcCCcHHHHHHHHHHHHHhhCC
Q 046354 322 GHGFQVFRLFARMLKSGTKPDEIT----------------------FV----GVLSDCSHAGLVEKGRKTFNLMSRAYGF 375 (510)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~~----------------------~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (510)
..++.|......+......+|..- |. -+.-++.+.+..+....+....... .+
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n~ 408 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED-NV 408 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh-cC
Confidence 999999988888876222222111 11 1222334444444444444445444 54
Q ss_pred CC--CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 376 KP--RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 376 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
.| +...|.-+.++|...|++++|..++..+....+ +...|-.+..+|...|.+++|.+.|++++...|++...-..
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~ 488 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT 488 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh
Confidence 44 577888999999999999999999999986655 56689999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHH
Q 046354 452 SANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|+.++.+.|+.++|.+.++.+.
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-11 Score=115.21 Aligned_cols=441 Identities=13% Similarity=0.069 Sum_probs=293.9
Q ss_pred ChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhh
Q 046354 9 KVKEATKLFDEMSQ---PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEI 84 (510)
Q Consensus 9 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~ 84 (510)
+.++|..++.+..+ .+...|. +|++..-++.|..++++.++.-| +..+|.+-...--..|+.+...+++++.
T Consensus 391 ~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred ChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34556666666652 3334443 45566677778888888777644 5666766666666677777777777665
Q ss_pred cc--------C----------------Chhh---------------------HHHHHHHHHcCCChHHHHHHHHhccccC
Q 046354 85 YE--------G----------------NVYS---------------------WTSLISGYFKARQVDEGRRLFDRMPLKL 119 (510)
Q Consensus 85 ~~--------~----------------~~~~---------------------~~~li~~~~~~g~~~~A~~~~~~m~~~~ 119 (510)
+. - .+.| |+.-...|.+.+.++-|..+|....+-.
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 21 1 1222 3333333444444444444444443331
Q ss_pred CChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHH
Q 046354 120 KNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASEL 196 (510)
Q Consensus 120 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 196 (510)
|. +...|...+..-...|..+....+|++.. +.....|-.....+...|++..|..+
T Consensus 547 p~--------------------k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 547 PC--------------------KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred cc--------------------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 11 33444455555555677777777777776 44455666667777788888888888
Q ss_pred HhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH--HHh-hhhhhhhHHHHHHHHhCCCc
Q 046354 197 FNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL--TSC-EGMLENMLAHALAIRLGFEQ 270 (510)
Q Consensus 197 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll--~~~-~~~~~~~~~~~~~~~~~~~~ 270 (510)
+.+.-+ | +...|-+.+.....+.+++.|..+|.+.... .|+...|..-+ .-+ ....+........ -..++.
T Consensus 607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~-lk~fp~ 683 (913)
T KOG0495|consen 607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEA-LKSFPD 683 (913)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHH-HHhCCc
Confidence 777665 3 4566777777788888888888888887663 34444433222 222 2222222222211 123444
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC--CCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDV-VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
-...|..+...+ -..++++.|...|..-.+ |+. -.|-.+...=-+.|.+..|..+|++.+-.+ +-+...|.
T Consensus 684 f~Kl~lmlGQi~-----e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 684 FHKLWLMLGQIE-----EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred hHHHHHHHhHHH-----HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 555666666777 778888899888887766 443 467777777778889999999999888764 66777888
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCC
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD 427 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 427 (510)
..|+.-.+.|+.+.|..++.++.+ .++.+...|.--|.+..+.++-......+++.. .|+...-.+...+.....
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce---~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE---HDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc---CCchhHHHHHHHHHHHHH
Confidence 899999999999999999988887 466677788878888878787777777766654 666777777777788889
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccceeEEEeC
Q 046354 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQIEVK 488 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~ 488 (510)
+++|...|.++.+.+|++..+|.-+...+.+.|.-++-.+++.+-.. ..+.-|..|+-+.
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~-~EP~hG~~W~avS 892 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET-AEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc-cCCCCCcHHHHHh
Confidence 99999999999999999999999999999999988888888874441 2222244565443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-12 Score=113.53 Aligned_cols=398 Identities=14% Similarity=0.124 Sum_probs=278.1
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHH
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCA 133 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~ 133 (510)
+...|......=...+++..|+++|+..+. .+...|.-.+.+-.++..+..|..++++....-|.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd---------- 141 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD---------- 141 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH----------
Confidence 444555555555667888899999999866 4566788888888899999999999998877645432
Q ss_pred hcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHH
Q 046354 134 HNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWN 209 (510)
Q Consensus 134 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 209 (510)
..|...+-.-...|++..|.++|+.-. +|+...|.+.|..-.+-+.++.|..+++...- |++.+|-
T Consensus 142 ----------qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wi 211 (677)
T KOG1915|consen 142 ----------QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWI 211 (677)
T ss_pred ----------HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHH
Confidence 223333444556788889999998866 89999999999999999999999999988764 8999998
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh-------hhhhhHHHHHHHHhCCCcc-hhhhhhhhhh
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG-------MLENMLAHALAIRLGFEQE-TSLTYKCTCH 281 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 281 (510)
-....-.+.|+...|..+|+...+. -.|...-..++.+++. ..+...++.+....-.... ...+......
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 8888888999999999999887662 2233333344444333 3333333444333322211 2233333222
Q ss_pred ccccccccccChhhHHHHh--------cccCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch--h---
Q 046354 282 YVFWDWGFQLDVNSARLAF--------ERLEAK---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI--T--- 345 (510)
Q Consensus 282 ~~~~~~~~~~~~~~a~~~~--------~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~--- 345 (510)
- -+-|+....+... +..... |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .
T Consensus 290 E-----KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~R 363 (677)
T KOG1915|consen 290 E-----KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRR 363 (677)
T ss_pred H-----HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHH
Confidence 2 2233333222221 222222 4456777777777889999999999998875 666432 1
Q ss_pred --HHHHHHhc---CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH----HhhcCChHHHHHHHhhCCCCCCcHHHHH
Q 046354 346 --FVGVLSDC---SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI----LRRAGQVKEAMRVVSKMPPHERDHVVLG 416 (510)
Q Consensus 346 --~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (510)
|.-+=-+| ....|++.+.++++...+ -++....|+.-+--+ -.++.++..|.+++.......|...+|.
T Consensus 364 YIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk 441 (677)
T KOG1915|consen 364 YIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH
Confidence 11111111 356788899999999887 456666666544333 3578889999999999888899999999
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH-HhhccccceeE
Q 046354 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKKVASFSQ 484 (510)
Q Consensus 417 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~p~~~~ 484 (510)
..|..-.+.++++....+|++.++.+|.+..+|...+..-...|+++.|..+|+... +.....|..-|
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999988889999999999999999999999999999999999999999999998887 54445555433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-16 Score=140.46 Aligned_cols=253 Identities=15% Similarity=0.128 Sum_probs=114.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhh
Q 046354 179 AMITAYVDAGNMAQASELFNLM-PQ----RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253 (510)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 253 (510)
.+...+.+.|++++|+++++.. .. .|...|..+.......++++.|...++++...+.. +...+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~----- 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQ----- 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc-----
Confidence 4466677777777777777432 22 24455566666666777777787777777654321 1111211111
Q ss_pred hhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
+ ...+++++|.+++....+ ++...+..++..+.+.++++++..++
T Consensus 87 ----------------------------l-----~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 87 ----------------------------L-----LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ----------------------------c-----cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 0 355667777776665533 45566777888899999999999999
Q ss_pred HHHHHcC-CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-
Q 046354 332 ARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH- 408 (510)
Q Consensus 332 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 408 (510)
+.+.... .+++...|..+...+.+.|+.++|.+.+++..+. .| ++.....++..+...|+.+++.++++...+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 9987632 3456667888888899999999999999999975 45 5778889999999999999988888776544
Q ss_pred CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++..+..+..+|...|+.++|...+++..+..|+++.....++.++...|+.++|.+++.++-
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34667888999999999999999999999999999999999999999999999999999988765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-13 Score=124.60 Aligned_cols=252 Identities=12% Similarity=0.020 Sum_probs=156.1
Q ss_pred HHhcCchHHHHHHHhhCC--CCChhHHH--HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHH
Q 046354 153 LERNAMTKLAREYFVQMP--NKDIVAWN--AMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~--~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~ 225 (510)
..+.|+++.|.+.+.++. .|+...+. .....+...|++++|...++.+.+ .++.....+...|.+.|++++|.
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 345566666666666655 34433222 335678889999999999998876 35677888999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHH-HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccC
Q 046354 226 KLLNLMFQSRFMPNETTCTSIL-TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304 (510)
Q Consensus 226 ~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 304 (510)
+++..+.+.+..++. ....+- .++.. ++... ....+.+...++++.+.
T Consensus 208 ~~l~~l~k~~~~~~~-~~~~l~~~a~~~-------------------------l~~~~-----~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 208 DILPSMAKAHVGDEE-HRAMLEQQAWIG-------------------------LMDQA-----MADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHHHHHcCCCCHH-HHHHHHHHHHHH-------------------------HHHHH-----HHhcCHHHHHHHHHhCC
Confidence 999999887654322 111111 00000 00000 22223344444444443
Q ss_pred C---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcch
Q 046354 305 A---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381 (510)
Q Consensus 305 ~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (510)
. .++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+. .+-|+..
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l 330 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLL 330 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHH
Confidence 3 35556666677777777777777777776652 4444211 223333446777777777776653 3445555
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (510)
+..+...+.+.|++++|.+.|+...+..|+...+..+...+.+.|+.++|.++|++.+.+
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666777777777777777777777666677776666777777777777777777766543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-12 Score=124.53 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=85.9
Q ss_pred CCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHH
Q 046354 6 CTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVF 81 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~ 81 (510)
.+|++++|.+++.++. +.+...|.+|...|-+.|+.+++...+-.+....| |...|..+.....+.|+++.|.-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 3599999999999998 35678899999999999999999998888777766 6678888888888888899888888
Q ss_pred HhhccCChh---hHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 82 DEIYEGNVY---SWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 82 ~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
.+.++.+.. .+---+..|-+.|+...|..-|.++...
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 888663322 2222344555666666666666666554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=128.29 Aligned_cols=274 Identities=14% Similarity=0.063 Sum_probs=213.1
Q ss_pred CHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHhhHHHHHHHhhhhhhhhHHHHHH
Q 046354 189 NMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNETTCTSILTSCEGMLENMLAHALA 263 (510)
Q Consensus 189 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 263 (510)
+..+|...|..+.. +| ..+...+..+|...+++++|.++|+.+++.. .--+..+|.+.+..+.+...--.... -
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq-~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ-D 412 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH-H
Confidence 46678888877554 33 3566677888888888999999988887743 12355667777765432211111111 1
Q ss_pred HHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 046354 264 IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340 (510)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 340 (510)
.-...+..+..|-++.++| .-+++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.
T Consensus 413 Li~~~~~sPesWca~GNcf-----SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCF-----SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchh-----hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 1223466788999999999 9999999999999999884 446788888888889999999999998764 33
Q ss_pred CCc-hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHH
Q 046354 341 PDE-ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGA 417 (510)
Q Consensus 341 p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 417 (510)
|.. ..|..+...|.+.++++.|+-.|+++.+ +.| +..+...+...+.+.|+.++|+.+++++.-.+| |+.+--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 332 2555677789999999999999999984 556 566777888899999999999999999986666 6666666
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
-+..+...+++++|...++++++.-|++...|..++.+|.+.|+.+.|+.-|.-+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 67777888999999999999999999999999999999999999999998887665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-11 Score=112.11 Aligned_cols=368 Identities=12% Similarity=0.068 Sum_probs=229.2
Q ss_pred hcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHH
Q 046354 70 KAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVIS 145 (510)
Q Consensus 70 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 145 (510)
...+.++|+-++.+..+ .+...|. +|++..-++.|..++++.++. +.+...|.+-...-..+|+.+.
T Consensus 388 elE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m----- 458 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM----- 458 (913)
T ss_pred hccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH-----
Confidence 33455556666666644 2223333 445556677788888887777 4455556555544444444433
Q ss_pred HHHHHHHHHhcCchHHHHHHHhhCC--------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhhHHHH
Q 046354 146 WTTMCTGLERNAMTKLAREYFVQMP--------NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ------RNVWTWNAM 211 (510)
Q Consensus 146 ~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l 211 (510)
...++++.. ..+...|-.=...|-..|-+-.+..+...... .--.+|..-
T Consensus 459 ----------------v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~d 522 (913)
T KOG0495|consen 459 ----------------VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDD 522 (913)
T ss_pred ----------------HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhh
Confidence 333332222 11222222222333333333333333332221 112345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHhh-HHHHHHHhhhhhhhhHHHHHHHH--hCCCcchhhhhhhhhhccccccc
Q 046354 212 IDRYARNGPEGAAMKLLNLMFQSRFMPNETT-CTSILTSCEGMLENMLAHALAIR--LGFEQETSLTYKCTCHYVFWDWG 288 (510)
Q Consensus 212 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 288 (510)
...|.+.+.++-|..+|...++ +.|...+ +......-..........++..+ ...+.....|-.....+ -
T Consensus 523 a~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~-----w 595 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK-----W 595 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH-----H
Confidence 5555555555555555554443 2222211 11111111111111111111111 12233344444444444 6
Q ss_pred cccChhhHHHHhcccCC--C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHH
Q 046354 289 FQLDVNSARLAFERLEA--K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 365 (510)
..|++..|+.++....+ | +...|-+-+.......+++.|..+|.+... ..|+...|.--+..---.++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 67999999999888776 3 445788888888899999999999998876 468888887777666678899999999
Q ss_pred HHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
+++..+. ++.-...|..+.+.+.+.++++.|.+.|..-.+..|+ +..|..|...-.+.|++.+|..++++..-.+|.
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 9999884 4555778888999999999999999999988878885 556777777777889999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 445 SSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+...|...+..-.+.|+.+.|..+..+..
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999997766544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.9e-13 Score=124.18 Aligned_cols=273 Identities=10% Similarity=0.021 Sum_probs=205.1
Q ss_pred cCchHHHHHHHhhCCC--CChhHHHHH-HHHHHhcCCHHHHHHHHhhCCC--CChhhHH--HHHHHHHhcCChHHHHHHH
Q 046354 156 NAMTKLAREYFVQMPN--KDIVAWNAM-ITAYVDAGNMAQASELFNLMPQ--RNVWTWN--AMIDRYARNGPEGAAMKLL 228 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~A~~~~ 228 (510)
.|+++.|.+.+..... +++..+..+ ..+..+.|+.+.|...+.++.+ |+..... .....+...|++++|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6899999988887662 233333333 4455899999999999999877 4543332 3366888999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCC-
Q 046354 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD- 307 (510)
Q Consensus 229 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~- 307 (510)
+++.+.. |+ ++.+...+...| ...|++++|.+++..+.+..
T Consensus 177 ~~~~~~~--P~-------------------------------~~~al~ll~~~~-----~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 177 DKLLEVA--PR-------------------------------HPEVLRLAEQAY-----IRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHhcC--CC-------------------------------CHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHcCC
Confidence 9997744 33 233333344445 88899999999998887621
Q ss_pred --h--------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC
Q 046354 308 --V--------VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 308 --~--------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (510)
. .+|..++.......+.+...++|+.+.+. .+.+......+..++...|+.++|.+.+++..+. +|
T Consensus 219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~ 294 (398)
T PRK10747 219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QY 294 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC
Confidence 1 13334444444555667777777776543 3557778888999999999999999999998864 55
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
++... ++.+....++.+++.+..+...+..| |...+..+...|...|++++|.+.|+++++..|++ ..+..++.++
T Consensus 295 ~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~ 371 (398)
T PRK10747 295 DERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADAL 371 (398)
T ss_pred CHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Confidence 55332 34444566999999999999887888 45567888899999999999999999999999996 5678999999
Q ss_pred HHcCCChHHHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKKME 473 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~ 473 (510)
.+.|+.++|..++++-.
T Consensus 372 ~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 372 DRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 99999999999998654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-11 Score=113.26 Aligned_cols=439 Identities=11% Similarity=0.018 Sum_probs=301.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhh--ccCChhhHHHHHHHHHc
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI--YEGNVYSWTSLISGYFK 101 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~ 101 (510)
+..-+..+.+-+..+.++..|.-+-++.....-|+...--++.++.-.|+++.|..+...- .+.|..+.......+.+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVK 94 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3445666666667777888888777777665555555555778888888888887776543 56788888888888899
Q ss_pred CCChHHHHHHHHhccccCCChhhHHHH--HHHHHhcCCc----chhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChh
Q 046354 102 ARQVDEGRRLFDRMPLKLKNVVSWTTV--VLGCAHNGLI----AKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175 (510)
Q Consensus 102 ~g~~~~A~~~~~~m~~~~~~~~~~~~l--l~~~~~~~~~----~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 175 (510)
..++++|..++...... -+...+..- ......++.. .......+..-...|....+.++|...|.+....|+.
T Consensus 95 lk~~~~al~vl~~~~~~-~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~ 173 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVE-TNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK 173 (611)
T ss_pred HHHHHHHHHHhcccchh-hcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh
Confidence 99999999988843211 011110000 0000000100 0001222222334566667778888888877755555
Q ss_pred HHHHHHHH---HHhc------------------CCHHHHHHHHhhC----CC----------------CChhhHHHHHHH
Q 046354 176 AWNAMITA---YVDA------------------GNMAQASELFNLM----PQ----------------RNVWTWNAMIDR 214 (510)
Q Consensus 176 ~~~~li~~---~~~~------------------g~~~~A~~~~~~~----~~----------------~~~~~~~~li~~ 214 (510)
.+.++... ..-. -+.+....+|+-. .. .++........-
T Consensus 174 c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 174 CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 44433221 1100 1112222223211 00 234445555666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHH--HHhCCCcchhhhhhhhhhccccccccccC
Q 046354 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA--IRLGFEQETSLTYKCTCHYVFWDWGFQLD 292 (510)
Q Consensus 215 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (510)
+...+++.+..+++++..+. .++....+..-|..+-........+... .....|..+..|.++...| ...|+
T Consensus 254 ~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY-----l~i~k 327 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY-----LMIGK 327 (611)
T ss_pred HHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH-----HHhcC
Confidence 78899999999999998774 2333344444444554555555444443 3456788888999999999 88899
Q ss_pred hhhHHHHhcccCCCC---hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHH
Q 046354 293 VNSARLAFERLEAKD---VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369 (510)
Q Consensus 293 ~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 369 (510)
..+|++.|.+...-| ...|-.+..+|+-.|..+.|+..+...-+. ++-....+-.+..-|.+.++.+.|.++|...
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999887633 348999999999999999999999887764 3333334445556688899999999999998
Q ss_pred HHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-------CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 046354 370 SRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH-------ER-DHVVLGALLGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 370 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
.. +.| |+.+.+-+.-..-..+.+.+|..+|+..... .+ -..+++.|..+|.+.+.+++|+..+++.+.
T Consensus 407 ~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 407 LA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred Hh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 74 455 7888888887777889999999999876521 22 455789999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.|.++.++..++-+|...|+.+.|+..|.+..
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999766
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-11 Score=108.45 Aligned_cols=216 Identities=10% Similarity=0.080 Sum_probs=147.3
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCChhhHHHHHHhh----ccCCh
Q 046354 16 LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEI----YEGNV 89 (510)
Q Consensus 16 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~ 89 (510)
++-+..+.+..+|..+|.++++-...+.|.+++++.... ..+..+||.+|.+-.-..+ .+++.+| ..||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 444455667889999999999999999999999998775 4588899999876543333 6777777 45999
Q ss_pred hhHHHHHHHHHcCCChHHH----HHHHHhcccc--CCChhhHHHHHHHHHhcCCcchh----------------------
Q 046354 90 YSWTSLISGYFKARQVDEG----RRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKL---------------------- 141 (510)
Q Consensus 90 ~~~~~li~~~~~~g~~~~A----~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a---------------------- 141 (510)
.|+|+++++..+.|+++.| .+++.+|++. .|...+|..+|..+++-++....
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 9999999999999988764 5667777776 89999999999999888877554
Q ss_pred -hHHHHHHHHHHHHhcCchHHHHHHHhhCC--------CCCh---hHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCh
Q 046354 142 -EVISWTTMCTGLERNAMTKLAREYFVQMP--------NKDI---VAWNAMITAYVDAGNMAQASELFNLMPQ----RNV 205 (510)
Q Consensus 142 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~ 205 (510)
+...|...+..|.+..+.+.|.++..-.. .|+. .-|..+....++.-..+.-...|+.|.. |+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 44455555555555555555555433322 1111 1233444445555555555555555554 555
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 235 (510)
.+...++.+..-.|+++-.-+++.+++..|
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 555555555555555655555665555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-12 Score=113.35 Aligned_cols=188 Identities=13% Similarity=0.039 Sum_probs=153.1
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHH---HHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMI---LAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|++++|.+.+++....|...-.+|. -.+-..|+.++|+..|-++..- +.-+......+...|....+..+|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 5689999999999999887765444433 2466789999999999887653 34456677778888888899999999
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
++-.... -++.|+.+.+-|.+.|-+.|+-..|.+..-.--.- +.+..+..-|...|....-+++|+..|+++--+.|
T Consensus 580 ~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 580 LLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9988764 45668999999999999999999999876544333 44788888888888888889999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 444 SSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
+.+.....++.++.+.|++.+|..+++..-+..+.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 98877888889999999999999999987754443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-11 Score=118.01 Aligned_cols=286 Identities=11% Similarity=0.032 Sum_probs=177.3
Q ss_pred HcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCCh--h
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKDI--V 175 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~--~ 175 (510)
...|+++.|.+.+.+..+..|+...+ +-....+....|+.+.|.+.+.+.. .|+. .
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~--------------------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~ 154 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLN--------------------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL 154 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHH--------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH
Confidence 45899999999998877755553222 2233556677788889999988864 3444 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
........+...|+++.|...++.+.+ | +...+..+...+...|++++|.+.+..+.+.++.++......-..+...
T Consensus 155 ~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 155 VEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 444457888999999999999999876 4 6678889999999999999999999999998754332221111111100
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHH
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFR 329 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~ 329 (510)
.. ..- ......+.....++.... .+...+..+...+...|+.++|.+
T Consensus 235 ~l-------------------------~~~-----~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 235 LL-------------------------DEA-----MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HH-------------------------HHH-----HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 00 000 111223333444444433 356677777777788888888888
Q ss_pred HHHHHHHcCCCCCchhH---HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc--chhHhHHhHHhhcCChHHHHHHHh-
Q 046354 330 LFARMLKSGTKPDEITF---VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA--EHYSCLADILRRAGQVKEAMRVVS- 403 (510)
Q Consensus 330 ~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~- 403 (510)
++++..+. .||.... ..........++.+.+.+.++...+. .+-++ ....++...+.+.|++++|.+.|+
T Consensus 285 ~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 285 IIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 88777764 3443311 11111123345666666666666553 22233 444566666666666666666666
Q ss_pred -hCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 404 -KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 404 -~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
...+..|+...+..+...+.+.|+.++|.+++++.+
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 343345666666666666666666666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.2e-13 Score=123.70 Aligned_cols=281 Identities=13% Similarity=0.110 Sum_probs=211.0
Q ss_pred ChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC------CCChhHH
Q 046354 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP------NKDIVAW 177 (510)
Q Consensus 104 ~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~ 177 (510)
+..+|...|+.+....+|.. .+...+..+|...+++++++++|+.+. -.+..+|
T Consensus 334 ~~~~A~~~~~klp~h~~nt~--------------------wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiy 393 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG--------------------WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIY 393 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHH
Confidence 56778888887655455543 344557788889999999999999887 2356788
Q ss_pred HHHHHHHHhcCCHHH-HHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh
Q 046354 178 NAMITAYVDAGNMAQ-ASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256 (510)
Q Consensus 178 ~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 256 (510)
++.+..+-+.=...- |..+.+.. ...+.+|.++..+|..+++.+.|++.|++..+ +.|+ .+|.
T Consensus 394 ST~LWHLq~~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~-faYa------------ 457 (638)
T KOG1126|consen 394 STTLWHLQDEVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPR-FAYA------------ 457 (638)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCc-cchh------------
Confidence 887765433322222 22222222 25678999999999999999999999999965 3331 2222
Q ss_pred hHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHH---HHHHHHhcCChhhHHHHHHH
Q 046354 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTA---MILAYSNHGHGFQVFRLFAR 333 (510)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~ 333 (510)
++.+..-+ .....+|.|...|+.....++..||+ +...|.+.++++.|+-.|+.
T Consensus 458 ------------------yTLlGhE~-----~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 458 ------------------YTLLGHES-----IATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred ------------------hhhcCChh-----hhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 22233333 66778999999999999877776665 66789999999999999999
Q ss_pred HHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-
Q 046354 334 MLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD- 411 (510)
Q Consensus 334 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 411 (510)
..+-. +-+.+....+...+.+.|+.++|+++++++.. +.| |+..--.-+..+...+++++|...++++++..|+
T Consensus 515 A~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e 590 (638)
T KOG1126|consen 515 AVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE 590 (638)
T ss_pred hhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch
Confidence 98743 34455667777778899999999999999985 344 5555455667778899999999999999988885
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 447 (510)
...+-.+...|.+.|+.+.|+.-|..+.+++|....
T Consensus 591 s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 456777778899999999999999999999998754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.4e-15 Score=131.85 Aligned_cols=233 Identities=17% Similarity=0.132 Sum_probs=108.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccc
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (510)
.+...+.+.|++++|++++++......+|+...|..++.. .. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~-------------------------------La-----~~ 56 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLAD-------------------------------LA-----WS 56 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc-------------------------------cc-----cc
Confidence 4577888999999999999765544334555444443332 22 66
Q ss_pred ccChhhHHHHhcccCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHH
Q 046354 290 QLDVNSARLAFERLEAK---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 366 (510)
.++.+.|...++++... ++..+..++.. ...+++++|.+++....+. .++...+..++..+...++++++..++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 78999999999999873 34466677776 7899999999999887664 356677788888889999999999999
Q ss_pred HHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+.+......++++..|..+...+.+.|+.++|.+.+++..+..| |......++..+...|+.+++..+++...+..|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence 99876534466788889999999999999999999999998888 47788899999999999999999999999888999
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccc
Q 046354 446 SGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVAS 481 (510)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 481 (510)
+..+..++.+|...|+.++|+.++++..+..+..|.
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccc
Confidence 999999999999999999999999998765555554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-12 Score=111.68 Aligned_cols=289 Identities=15% Similarity=0.057 Sum_probs=195.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH----
Q 046354 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL---- 247 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll---- 247 (510)
.|...+-.....+.+.|..+.|...|......-+..|.+.+....-..+.+.+..+.. |...|.+.+...+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHHH
Confidence 3444444444455566666667666666555444455554444333333333222211 1111111111111
Q ss_pred -HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCC------hhhH---------
Q 046354 248 -TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD------VVSW--------- 311 (510)
Q Consensus 248 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~--------- 311 (510)
.......+...........|++.+..+-+....+. -...+++.|+.+|+++.+.| ..+|
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~-----y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAAS-----YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 11122233333333344555666665555555555 67788888888888887622 2222
Q ss_pred ----------------------HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHH
Q 046354 312 ----------------------TAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369 (510)
Q Consensus 312 ----------------------~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 369 (510)
.++..-|+-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++.+
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 234445566778999999999998853 333457777788899999999999999999
Q ss_pred HHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.+- .+-|-..|-.|.++|.-.+...-|+-.|++.....| |...|.+|..+|.+.++.++|+..|++++.....+...
T Consensus 391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 852 334788889999999999999999999999988877 78899999999999999999999999999888777788
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 449 YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..|+.+|.+.++.++|.+++++-.
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999988665
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-11 Score=108.85 Aligned_cols=447 Identities=13% Similarity=0.128 Sum_probs=274.8
Q ss_pred ccCCCChHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHH
Q 046354 4 FGCTGKVKEATKLFDEMSQ-----PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
+.++|++......|+.... .-...|...+...-+.+-++.++++|++..+..| ..-+..|..++..+++++|.
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P--~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP--EAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH--HHHHHHHHHHHhccchHHHH
Confidence 3456666666677766651 2335677777777777777788888888877444 33666777778888888888
Q ss_pred HHHHhhcc--------------------------C--------------------C--hhhHHHHHHHHHcCCChHHHHH
Q 046354 79 KVFDEIYE--------------------------G--------------------N--VYSWTSLISGYFKARQVDEGRR 110 (510)
Q Consensus 79 ~~~~~~~~--------------------------~--------------------~--~~~~~~li~~~~~~g~~~~A~~ 110 (510)
+.+..++. | | ...|++|.+.|++.|++++|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 87776622 1 1 1248999999999999999999
Q ss_pred HHHhccccCCChhhHHHHHHHHHhcCCcchh---------------------hHHHHHHHHH------------------
Q 046354 111 LFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL---------------------EVISWTTMCT------------------ 151 (510)
Q Consensus 111 ~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a---------------------~~~~~~~l~~------------------ 151 (510)
+|++.......+.-|+.+..+|+.......+ .-..+..+++
T Consensus 270 vyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 270 VYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 9999887645555555555555432211100 0011111111
Q ss_pred ------HHHhcCchHHHHHHHhhCC---CC------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHH
Q 046354 152 ------GLERNAMTKLAREYFVQMP---NK------DIVAWNAMITAYVDAGNMAQASELFNLMPQRN-------VWTWN 209 (510)
Q Consensus 152 ------~~~~~~~~~~a~~~~~~~~---~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~ 209 (510)
.-...|+..+-...+.++. .| -...|..+...|-..|+++.|..+|++..+.+ ..+|.
T Consensus 350 ~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 350 EEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred HHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 1112344555555555544 11 12357888899999999999999999988722 24677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------------CHhh---HHHHHHHhhhhhhhhHHHHHHHHhCCC
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMP-----------------NETT---CTSILTSCEGMLENMLAHALAIRLGFE 269 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----------------~~~~---~~~ll~~~~~~~~~~~~~~~~~~~~~~ 269 (510)
.....-.+..+++.|+++++......-.| +... |.-+..+++.+.....++..++...+.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 77777778889999999888875432221 1222 344445666666777777777776665
Q ss_pred cchhhhhhhhhhccccccccccChhhHHHHhcccCC----CCh-hhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCC
Q 046354 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----KDV-VSWTAMILAYSN---HGHGFQVFRLFARMLKSGTKP 341 (510)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p 341 (510)
....+.|.. ..+ -...-++++.+++++-.. |++ ..|+..+.-+.+ ..+++.|..+|++..+ |++|
T Consensus 510 TPqii~NyA-mfL-----Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 510 TPQIIINYA-MFL-----EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred CHHHHHHHH-HHH-----HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 444444332 222 556678999999998876 554 378887776654 2468999999999998 7887
Q ss_pred CchhHHHHHHhc--CcCCcHHHHHHHHHHHHHhhCCCCC--cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHH
Q 046354 342 DEITFVGVLSDC--SHAGLVEKGRKTFNLMSRAYGFKPR--AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA 417 (510)
Q Consensus 342 ~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (510)
...-+..|+-+- ...|....|..+++++.. ++++. ..+|+.+|.--...=-+.....+|++..+.-|+...-..
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~m 660 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREM 660 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHH
Confidence 765443443322 245777888888888765 44442 345555554333333334444555555544454443222
Q ss_pred H---HHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHcCC
Q 046354 418 L---LGACRLHGDVRMADYIGERLIELQPSS--SGAYVLSANVHAARGE 461 (510)
Q Consensus 418 l---~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 461 (510)
. ...-.+.|..+.|..+|.-.-+..|.. +..|.+.-..-.+-|+
T Consensus 661 clrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 661 CLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 2 222345566666666666665444332 2225555555555565
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-11 Score=105.00 Aligned_cols=282 Identities=11% Similarity=0.052 Sum_probs=210.8
Q ss_pred CCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC----CCChhHH
Q 046354 102 ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIVAW 177 (510)
Q Consensus 102 ~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 177 (510)
.|++.+|+++..+-.+..+.+ ...|..-+.+....|+.+.+-+++.+.. .++...+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p--------------------~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ 156 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP--------------------VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE 156 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch--------------------HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH
Confidence 799999999998866542222 2233344556667788888888888876 3344566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhh
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 254 (510)
-+........|+...|..-++++.+ .++........+|.+.|++.+...++..|.+.|.--++..-..=-.++
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~---- 232 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW---- 232 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH----
Confidence 7777889999999999888877665 678899999999999999999999999999998665543221111111
Q ss_pred hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
..++.-. ...+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.
T Consensus 233 ---------------------~glL~q~-----~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i 286 (400)
T COG3071 233 ---------------------EGLLQQA-----RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEII 286 (400)
T ss_pred ---------------------HHHHHHH-----hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHH
Confidence 1111111 333334444455666554 45666777888889999999999999
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD 411 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (510)
++..+++..|+ -...-.+.+.++...-.+..+...+. .+.++..+.+|...|.+.+.|.+|...|+...+..|+
T Consensus 287 ~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 287 EDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 99988877776 22233466778888888888887774 3445578889999999999999999999988888999
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
..+|..+..++.+.|+.++|.+.+++.+
T Consensus 361 ~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 361 ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999999999999999999887
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-11 Score=104.37 Aligned_cols=294 Identities=12% Similarity=0.108 Sum_probs=186.4
Q ss_pred cCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-CCChh----
Q 046354 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIV---- 175 (510)
Q Consensus 101 ~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~---- 175 (510)
-+++.++|.++|-+|.+ .|..|+. +..++.+.|.+.|..+.|+++.+... .||..
T Consensus 47 Ls~Q~dKAvdlF~e~l~--~d~~t~e------------------~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr 106 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ--EDPETFE------------------AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQR 106 (389)
T ss_pred hhcCcchHHHHHHHHHh--cCchhhH------------------HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHH
Confidence 35789999999999998 5555543 33456777888899999999999887 55542
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHhhCCC-C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 046354 176 --AWNAMITAYVDAGNMAQASELFNLMPQ-R--NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250 (510)
Q Consensus 176 --~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 250 (510)
....|..-|...|-+|+|+.+|..+.+ + -......|+..|-...+|++|+++-+++...|-.+...- |..
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----IAq- 181 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----IAQ- 181 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----HHH-
Confidence 334566778899999999999999987 3 245677899999999999999999999977654433222 211
Q ss_pred hhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHH
Q 046354 251 EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330 (510)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 330 (510)
.|.-+...+....+++.|..+
T Consensus 182 -----------------------------------------------------------fyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 182 -----------------------------------------------------------FYCELAQQALASSDVDRAREL 202 (389)
T ss_pred -----------------------------------------------------------HHHHHHHHHhhhhhHHHHHHH
Confidence 133344455555666666666
Q ss_pred HHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCC
Q 046354 331 FARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE 409 (510)
Q Consensus 331 ~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (510)
+++..+.. |+.+ .-..+.+.....|+++.|.+.|+.+.+. +..--+.+...|..+|...|+.++....+.++.+..
T Consensus 203 l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 66666542 3222 2223444555666777777777766654 323334555666667777777777777666666555
Q ss_pred CcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HH--HcCCChHHHHHHHHHH-Hhhccccce
Q 046354 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV-HA--ARGEWDEFAQVRKKME-RRVKKVASF 482 (510)
Q Consensus 410 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~--~~g~~~~A~~~~~~~~-~~~~~~p~~ 482 (510)
++...-..+...-....-.+.|...+.+-+...|.- ..+..++.. .. ..|.+.+-+-.+..|. +.++..|.+
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 555544444444444444455555555555555553 233333333 22 2344666666677776 555555543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-11 Score=104.46 Aligned_cols=322 Identities=14% Similarity=0.082 Sum_probs=203.2
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMP----QRNVWTWNAMID 213 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~ 213 (510)
+..++..++.+.++-...+.|.+++++.. +-+..++|.+|.+-.-.-+ .+++.+|. .||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 66788888888888888888999888876 4566778887765433322 44555554 399999999999
Q ss_pred HHHhcCChHH----HHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHH--------HHhCCC----cchhhhhh
Q 046354 214 RYARNGPEGA----AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA--------IRLGFE----QETSLTYK 277 (510)
Q Consensus 214 ~~~~~~~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~ 277 (510)
+..+.|+++. |++++.+|++.|+.|...+|..+|....+-.+...+.... ....++ .+...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998765 4678899999999999999999998665444432221111 111222 23344445
Q ss_pred hhhhccccccccccChhhHHHHhcccCC--------CC---hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 278 CTCHYVFWDWGFQLDVNSARLAFERLEA--------KD---VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 278 l~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
.+..+ ....+.+.|.++-.-+.. ++ ..-|..+....++....+.....|+.|.-.-+-|+..+.
T Consensus 362 AM~Ic-----~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 362 AMSIC-----SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHH-----HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 55555 566677777776654443 11 234566777778888888888999998877778888888
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC-Ch--------HH-----HHHHH-------hhC
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG-QV--------KE-----AMRVV-------SKM 405 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~-------~~~ 405 (510)
..++++....|.++-.-++|..+..- |.........-+...+++.. +. .. |..++ .++
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88999888888888888888887764 54443333333333333322 10 00 01111 112
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCCchh--HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 406 PPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ---PSSSGA--YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 406 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+.+-.....+..+..+.+.|..++|.+++....+.. |..|.. ...+...-.+......|..+++-|.
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2122234444555555667777777777777665222 333222 2334444555666667777777665
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.1e-11 Score=105.39 Aligned_cols=285 Identities=11% Similarity=0.068 Sum_probs=204.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC---CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHhhhh
Q 046354 180 MITAYVDAGNMAQASELFNLMPQ---RNV-WTWNAMIDRYARNGPEGAAMKLLNLMFQSRF--MPNETTCTSILTSCEGM 253 (510)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~ 253 (510)
+..++-.....+++.+-...... |+. ..-+....+.....++++|+.+|+++.+... --|..+|..++-.-..-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34556666666666655555443 332 2223333445567788888888888877631 12455665555432210
Q ss_pred hhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC---ChhhHHHHHHHHHhcCChhhHHHH
Q 046354 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK---DVVSWTAMILAYSNHGHGFQVFRL 330 (510)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 330 (510)
. .....+.....--+-.+.++-.+.+.| +-.++.++|...|++..+- ....|+.|..-|....+...|...
T Consensus 313 s-kLs~LA~~v~~idKyR~ETCCiIaNYY-----Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 S-KLSYLAQNVSNIDKYRPETCCIIANYY-----SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred H-HHHHHHHHHHHhccCCccceeeehhHH-----HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 0 001111111111122334445556666 8889999999999998873 346899999999999999999999
Q ss_pred HHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-C
Q 046354 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-E 409 (510)
Q Consensus 331 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 409 (510)
+++.++- .+.|-..|-.|.++|.-.+.+.=|+-+|++... --+.|+.+|.+|.++|.+.++.++|++.|.+.... +
T Consensus 387 YRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 387 YRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 9999986 366778999999999999999999999999986 23448999999999999999999999999998744 4
Q ss_pred CcHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-------cCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 410 RDHVVLGALLGACRLHGDVRMADYIGERLIE-------LQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 410 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+...+..|...|.+.++.++|.+.|++.++ ..|.-..+..-|+.-+.+.+++++|..+.....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 4668999999999999999999999999885 334333444557777888999999887665544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.8e-10 Score=101.86 Aligned_cols=433 Identities=10% Similarity=0.068 Sum_probs=263.2
Q ss_pred CcccCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHH
Q 046354 2 SQFGCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
+.++..|++++|.+....+. +.+...+..-+-++.+.+++++|+.+.+.-.....+...+-.-+.+..+.+..++|.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHH
Confidence 45678999999999999887 345667777778899999999999776655432122222212233345889999999
Q ss_pred HHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCc
Q 046354 79 KVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAM 158 (510)
Q Consensus 79 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 158 (510)
..++...+.+..+...-...+-+.|++++|..+|+.+.+. +...+...+++- ++. .+-
T Consensus 100 k~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn--~~dd~d~~~r~n----------------l~a----~~a 157 (652)
T KOG2376|consen 100 KTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN--NSDDQDEERRAN----------------LLA----VAA 157 (652)
T ss_pred HHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCchHHHHHHHH----------------HHH----HHH
Confidence 9999666666667777788889999999999999999774 222222222110 000 000
Q ss_pred hHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCC--------C--CC---h-----hhHHHHHHHHHh
Q 046354 159 TKLAREYFVQMPN---KDIVAWNAMITAYVDAGNMAQASELFNLMP--------Q--RN---V-----WTWNAMIDRYAR 217 (510)
Q Consensus 159 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~--~~---~-----~~~~~li~~~~~ 217 (510)
.-.+. +.+.... .+-..+......+...|++.+|+++++... + .+ . .+--.|..++..
T Consensus 158 ~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 158 ALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 01111 2333331 122223334556778899999999988772 1 11 1 223456667888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh------hhhhh------hHHHHHH-----HHhC-CCcchhhh-hhh
Q 046354 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE------GMLEN------MLAHALA-----IRLG-FEQETSLT-YKC 278 (510)
Q Consensus 218 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~~~~------~~~~~~~-----~~~~-~~~~~~~~-~~l 278 (510)
.|+..+|..++...+... .+|..........+. ...+. ....... .... -....... +.+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988764 344433333332111 11110 0000000 0000 00111111 222
Q ss_pred hhhccccccccccChhhHHHHhcccCCCC-hhhHHHHHHHHH--hcCChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcC
Q 046354 279 TCHYVFWDWGFQLDVNSARLAFERLEAKD-VVSWTAMILAYS--NHGHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCS 354 (510)
Q Consensus 279 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~ 354 (510)
+.+ ..+..+.+.++-..+.... ...+.+++.... +...+.+|.+++...-+.. +-. .......++...
T Consensus 316 L~l-------~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 316 LAL-------FTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHH-------HhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 222 3455666777766666532 334445544332 2335778888887776642 222 334555566778
Q ss_pred cCCcHHHHHHHHH--------HHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC----CCcHH----HHHHH
Q 046354 355 HAGLVEKGRKTFN--------LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH----ERDHV----VLGAL 418 (510)
Q Consensus 355 ~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~----~~~~l 418 (510)
..|+++.|.+++. .+.+ +...+.+...+...+.+.++-+.|..++.+.... .+... ++.-+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 8999999999998 4443 3445667777888888888866666666544321 22222 34444
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
...-.++|+-++|...++++.+.+|++......++.+|+.. +.+.|..+-.
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 44456779999999999999999999999999999998865 4566665544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-11 Score=115.87 Aligned_cols=278 Identities=10% Similarity=0.002 Sum_probs=197.9
Q ss_pred HhcCchHHHHHHHhhCC--CCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh--hHHHHHHHHHhcCChHHHHH
Q 046354 154 ERNAMTKLAREYFVQMP--NKDIV-AWNAMITAYVDAGNMAQASELFNLMPQ--RNVW--TWNAMIDRYARNGPEGAAMK 226 (510)
Q Consensus 154 ~~~~~~~~a~~~~~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~li~~~~~~~~~~~A~~ 226 (510)
...|+++.|.+.+.... .|++. .+-....+..+.|+.+.|.+.+.+..+ |+.. ..-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45799999999998877 44433 344456778889999999999998754 4442 34445788889999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC
Q 046354 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306 (510)
Q Consensus 227 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 306 (510)
.++.+.+.. |+ ++.+...+...+ ...|+++.|.+.+..+.+.
T Consensus 175 ~l~~l~~~~--P~-------------------------------~~~~l~ll~~~~-----~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 175 GVDKLLEMA--PR-------------------------------HKEVLKLAEEAY-----IRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHhC--CC-------------------------------CHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHHc
Confidence 999998754 33 223333344444 8899999999999888752
Q ss_pred ---ChhhHHH----HHHHHHhcCChhhHHHHHHHHHHcC---CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC
Q 046354 307 ---DVVSWTA----MILAYSNHGHGFQVFRLFARMLKSG---TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376 (510)
Q Consensus 307 ---~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (510)
+...+.. ........+..+++...+..+.+.. .+.+...+..+...+...|+.++|.+.+++..+. .
T Consensus 217 ~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~ 293 (409)
T TIGR00540 217 GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---L 293 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---C
Confidence 2222311 1112233333344444555555432 1236778888889999999999999999999975 3
Q ss_pred CCcch---hHhHHhHHhhcCChHHHHHHHhhCCCCCCc-H--HHHHHHHHHHHhhCCHHHHHHHHH--HHHhcCCCCchh
Q 046354 377 PRAEH---YSCLADILRRAGQVKEAMRVVSKMPPHERD-H--VVLGALLGACRLHGDVRMADYIGE--RLIELQPSSSGA 448 (510)
Q Consensus 377 ~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~ 448 (510)
|+... ...........++.+.+.+.+++..+..|+ + ....++...+.+.|++++|.+.|+ ...+..|++. .
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~ 372 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-D 372 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-H
Confidence 44331 111222233457888999999888877774 4 566788999999999999999999 5667888764 5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 449 YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..++.++.+.|+.++|.+++++..
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7799999999999999999999764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-09 Score=99.91 Aligned_cols=429 Identities=13% Similarity=0.112 Sum_probs=257.7
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHhccccCC---ChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHc
Q 046354 25 PVSCASMITVFLRNHDLPKAEALFRAMPESQR---NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK 101 (510)
Q Consensus 25 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 101 (510)
+..|..-+..+..+|+.......|+.....-| ...+|...+......+-++-+.++++..++-+...-+-.|..+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45677777788889999999999998876645 446788888888889999999999999998888888999999999
Q ss_pred CCChHHHHHHHHhcccc--------CCChhhHHHHHHHHHhcCCcchh-----------------hHHHHHHHHHHHHhc
Q 046354 102 ARQVDEGRRLFDRMPLK--------LKNVVSWTTVVLGCAHNGLIAKL-----------------EVISWTTMCTGLERN 156 (510)
Q Consensus 102 ~g~~~~A~~~~~~m~~~--------~~~~~~~~~ll~~~~~~~~~~~a-----------------~~~~~~~l~~~~~~~ 156 (510)
.+++++|.+.+...... +.+...|..+-....++.+.-.. -...|..|++-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 99999999999888764 33444555554444433322111 233445555555555
Q ss_pred CchHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH--hcC------ChHHHHH
Q 046354 157 AMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYA--RNG------PEGAAMK 226 (510)
Q Consensus 157 ~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~~------~~~~A~~ 226 (510)
|.++.|.++|++.. ...+.-++.+-++|+..-..--+ ..+. .. ..+ +++-...
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~----------------~~me-~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVA----------------AKME-LADEESGNEEDDVDLELHMA 324 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHH----------------HHHh-hhhhcccChhhhhhHHHHHH
Confidence 55555555555544 11222222222222221100000 0000 00 000 1111222
Q ss_pred HHHHHHHCC-----------CCCCHhhHHHHHHHhhh-hhhhhHHHHHHHH-----hCCCcchhhhhhhhhhcccccccc
Q 046354 227 LLNLMFQSR-----------FMPNETTCTSILTSCEG-MLENMLAHALAIR-----LGFEQETSLTYKCTCHYVFWDWGF 289 (510)
Q Consensus 227 ~~~~m~~~g-----------~~p~~~~~~~ll~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~ 289 (510)
-|+.+.+.+ -+.+..++..-+....+ .......+....+ .........|..+...| -.
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY-----e~ 399 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY-----EN 399 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH-----Hh
Confidence 222222211 01111222221111111 0001111111111 11122334567777778 99
Q ss_pred ccChhhHHHHhcccCCCCh-------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-----------C------Cchh
Q 046354 290 QLDVNSARLAFERLEAKDV-------VSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-----------P------DEIT 345 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----------p------~~~~ 345 (510)
.|+++.|+.+|++..+-+- .+|..-...=.++.+++.|++++++....--+ + +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999999887322 35555566667788999999988876542111 1 1122
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--CCcHH-HHHHHHHHH
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--ERDHV-VLGALLGAC 422 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~-~~~~l~~~~ 422 (510)
|...++.-...|-++....+++++.+. .+ -+|.+.-..+..+....-++++.+++++-... .|+.. .|+..+..+
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidL-ri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDL-RI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 444445455667888888899988875 22 24444445555666777899999999998876 45544 888888776
Q ss_pred Hhh---CCHHHHHHHHHHHHhcCCCC-chh-HHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 423 RLH---GDVRMADYIGERLIELQPSS-SGA-YVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 423 ~~~---~~~~~A~~~~~~~~~~~p~~-~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
.+. ...+.|..+|+++++..|.. ..+ |...+..-.+-|.-..|++++++...+++
T Consensus 558 i~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 553 47899999999999877732 222 55556666667888889999988764433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-11 Score=107.82 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=162.7
Q ss_pred hhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH
Q 046354 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348 (510)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 348 (510)
...+..+...+ ...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 31 ~~~~~~la~~~-----~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 31 AKIRVQLALGY-----LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 34555566666 889999999999998765 345678888899999999999999999998863 445567777
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCC
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGD 427 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 427 (510)
+...+...|++++|.+.++...+....+.....+..+...+...|++++|...+.+..+..| +...+..+...+...|+
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 88888999999999999999987412223455677788899999999999999999886666 45678888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+++|...++++.+..|.++..+..++.++...|+.++|..+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999998888888888889999999999999999988776
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-09 Score=100.38 Aligned_cols=276 Identities=11% Similarity=-0.006 Sum_probs=198.8
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRY 215 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 215 (510)
+......-.+-+-..+++++..++.+... +++...+..-|.++.+.|+..+-..+=.++.+ | ...+|-++..-|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 44455555566667778888888877776 45555666667778888877766666555555 3 457788888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhh
Q 046354 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295 (510)
Q Consensus 216 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 295 (510)
...|+.++|.+.|.+..... +.-...|-...+.| +-.|.-++
T Consensus 323 l~i~k~seARry~SKat~lD---------------------------------~~fgpaWl~fghsf-----a~e~EhdQ 364 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD---------------------------------PTFGPAWLAFGHSF-----AGEGEHDQ 364 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC---------------------------------ccccHHHHHHhHHh-----hhcchHHH
Confidence 88889999998888764321 11223344555555 66777777
Q ss_pred HHHHhcccCC--CC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 296 ARLAFERLEA--KD-VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 296 a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
|...+....+ +. .-.+--+..-|.+.++..-|.+.|.+.... .|-|+...+-+.-..-..+.+.+|..+|+.....
T Consensus 365 AmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 7776655443 11 112223344578889999999999988764 3555667777666666788999999999988732
Q ss_pred hC-CCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 373 YG-FKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 373 ~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
.. +.+ -..+++.|..+|.+.+++++|+..+++.....| +..++.++.-.|...|+++.|...|.+++.+.|++.
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 11 111 234578899999999999999999999887766 888999999999999999999999999999999997
Q ss_pred hhHHHHHHHH
Q 046354 447 GAYVLSANVH 456 (510)
Q Consensus 447 ~~~~~l~~~~ 456 (510)
.+-..|..+.
T Consensus 524 ~~~~lL~~ai 533 (611)
T KOG1173|consen 524 FISELLKLAI 533 (611)
T ss_pred HHHHHHHHHH
Confidence 7766666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-10 Score=101.84 Aligned_cols=152 Identities=15% Similarity=0.092 Sum_probs=128.3
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVK 396 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 396 (510)
+.-.|+.-.|..-|+..++....++ ..|..+...|....+.++..+.|+...+ +.| ++.+|..-..++.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHH
Confidence 4557888899999999888643332 2277777788899999999999999875 344 7888888888888889999
Q ss_pred HHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 397 EAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 397 ~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+|..-|++..+..| +...|-.+..+..+.+.+.+++..|++.++..|+.+..|...+.++..++++++|.+.|+...
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99999999998888 566888888888888999999999999999999999999999999999999999999999766
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-10 Score=96.29 Aligned_cols=224 Identities=13% Similarity=-0.009 Sum_probs=174.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccc
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (510)
+.+..+|.+.|.+.+|.+.++.-.... |-..||..+-..+ .
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY-------------------------------------~ 267 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVY-------------------------------------Q 267 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHH-------------------------------------H
Confidence 566777777777777777777766643 3334444444433 5
Q ss_pred cccChhhHHHHhcccCC--CChhh-HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHH
Q 046354 289 FQLDVNSARLAFERLEA--KDVVS-WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 365 (510)
+..+...|..+|.+..+ |..++ ..-+...+-..++.++|.++|+...+.. +.+......+...|.-.++++.|+.+
T Consensus 268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHH
Confidence 55566667776666655 33333 3345566777789999999999998863 55666777777888889999999999
Q ss_pred HHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--CC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 046354 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--ER--DHVVLGALLGACRLHGDVRMADYIGERLIEL 441 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (510)
++++.+- |+ .++..|+.+.-+|.-.+++|-++.-|++.... .| -..+|-.+.......||+..|.+.|+-.+..
T Consensus 347 YRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 347 YRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 9999986 64 46788888988888999999999888877643 45 3558888888888999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 442 QPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+|++...+..|+-+-.+.|+.++|..+++..+.
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999999999999999999999999998873
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-12 Score=80.65 Aligned_cols=50 Identities=30% Similarity=0.522 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 355 (510)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-09 Score=92.25 Aligned_cols=280 Identities=11% Similarity=0.098 Sum_probs=195.6
Q ss_pred CChhhHHHHHHhhccCChhh---HHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHH
Q 046354 72 GRVDEARKVFDEIYEGNVYS---WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148 (510)
Q Consensus 72 ~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 148 (510)
++.++|.+.|-+|.+.|..| --+|.+.|-+.|..+.|+++.+.+.+. ||. |+..-+ .+...
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdl-T~~qr~--------------lAl~q 112 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDL-TFEQRL--------------LALQQ 112 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCC-chHHHH--------------HHHHH
Confidence 67788888888887655544 446777788888888888888777664 443 222222 22334
Q ss_pred HHHHHHhcCchHHHHHHHhhCCC-C--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--------hhHHHHHHHHHh
Q 046354 149 MCTGLERNAMTKLAREYFVQMPN-K--DIVAWNAMITAYVDAGNMAQASELFNLMPQRNV--------WTWNAMIDRYAR 217 (510)
Q Consensus 149 l~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~ 217 (510)
+.+-|...|-++.|+++|....+ | -......|+..|-...+|++|+++-+++.+.+. ..|..+...+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 56667788888888888888874 2 234567789999999999999999887665222 346666677777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHH
Q 046354 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297 (510)
Q Consensus 218 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 297 (510)
..+.+.|..++.+..+.. |+
T Consensus 193 ~~~~d~A~~~l~kAlqa~--~~---------------------------------------------------------- 212 (389)
T COG2956 193 SSDVDRARELLKKALQAD--KK---------------------------------------------------------- 212 (389)
T ss_pred hhhHHHHHHHHHHHHhhC--cc----------------------------------------------------------
Confidence 788888888888876532 11
Q ss_pred HHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC
Q 046354 298 LAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (510)
.+..--.+...+...|++++|.+.|+...+.+..--+.+...|..+|...|+.++...++..+.+. .+
T Consensus 213 ---------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~ 280 (389)
T COG2956 213 ---------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NT 280 (389)
T ss_pred ---------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cC
Confidence 111122334566778899999999988888654444557777888899999999999998888764 45
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh---hCCHHHHHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL---HGDVRMADYIGERLI 439 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~ 439 (510)
.+..-..+.+.-....-.+.|...+.+-...+|+...+..|+..... .|..++....+..|.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 55555566665555566677776666655578999999988887543 345667777777776
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.2e-09 Score=92.20 Aligned_cols=270 Identities=13% Similarity=0.082 Sum_probs=161.1
Q ss_pred cCChhhHHHHHHhccccCCCh-hHHHHHHHHHHhcCChhhHHHHHHhhccC----ChhhHHHHHHHHHcCCChHHHHHHH
Q 046354 38 NHDLPKAEALFRAMPESQRNI-VAESAMIDGYVKAGRVDEARKVFDEIYEG----NVYSWTSLISGYFKARQVDEGRRLF 112 (510)
Q Consensus 38 ~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 112 (510)
.|++.+|+++..+..+..+.+ ..|..-+.+.-+.|+.+.+-+++.+.-++ +...+-+..+.....|+...|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 677777777777766654433 23444456666777777777777777442 3345566667777777777777777
Q ss_pred HhccccCC-ChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCC-----------CChhHHHHH
Q 046354 113 DRMPLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN-----------KDIVAWNAM 180 (510)
Q Consensus 113 ~~m~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l 180 (510)
+++.+..| +....... .++|.+.|++.....++..+.+ -...+|..+
T Consensus 177 ~~ll~~~pr~~~vlrLa---------------------~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 177 DQLLEMTPRHPEVLRLA---------------------LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHhCcCChHHHHHH---------------------HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 77766533 33333333 3344444444445555444431 112467777
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhh
Q 046354 181 ITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENM 257 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 257 (510)
++-....+..+.-...++..+. .++..-..++.-+.+.|+.++|.++.++..+++..|+-.+ ++..
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~~~-------- 304 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LIPR-------- 304 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HHhh--------
Confidence 7777667777776777777765 4677777888889999999999999999888776666221 1111
Q ss_pred HHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccC---CCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 046354 258 LAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE---AKDVVSWTAMILAYSNHGHGFQVFRLFARM 334 (510)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 334 (510)
.+.++...-++..++-. ..++..+.+|...|.+++.+.+|...|+..
T Consensus 305 ------------------------------l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 305 ------------------------------LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred ------------------------------cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222222222211111 123345555666666666666666666655
Q ss_pred HHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 335 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
.+ ..|+..+|..+.+++.+.|+...|.+..++...
T Consensus 355 l~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 355 LK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred Hh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44 356666666666666666666666666655553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-08 Score=89.38 Aligned_cols=269 Identities=12% Similarity=0.035 Sum_probs=168.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVW---TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
+.|+.....+..++...|+.++|...|++....|+. ........+.+.|+++....+...+.. .+..|-...+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~----~~~~ta~~wf 304 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA----KVKYTASHWF 304 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh----hhhcchhhhh
Confidence 456667777777777777777777777776653322 233334445667777777776666633 2222222222
Q ss_pred HHhhhhhhhhHH-HHH-HHHhCCCcchh---hhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHH
Q 046354 248 TSCEGMLENMLA-HAL-AIRLGFEQETS---LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYS 319 (510)
Q Consensus 248 ~~~~~~~~~~~~-~~~-~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 319 (510)
.+.+-....... .++ .....+..++. .+-.-...+ ...|+.++|.-.|+.... .+...|.-|+.+|.
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL-----~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL-----IALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH-----HhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 111111111000 000 01111111111 111122223 567788888888876654 35678899999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCchhHHHHH-HhcC-cCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChH
Q 046354 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVL-SDCS-HAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVK 396 (510)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 396 (510)
..|++.+|.-+-+...+. ++.+..+.+.+. ..|. ....-++|.+++++..+ +.|+ ....+.+.+.+...|+.+
T Consensus 380 A~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred hhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccc
Confidence 999999888877766654 455556665552 2332 33445778888877663 3554 445567788888899999
Q ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 397 EAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 397 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
+++.++++.....||....+.|...+...+.+.+|+..|..++.++|++-.+...+
T Consensus 456 D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred hHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 99999988887788888888888888888999999999999999999886444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-08 Score=96.98 Aligned_cols=409 Identities=11% Similarity=0.047 Sum_probs=233.2
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhccccC--CChhhHHHHHHH
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKL--KNVVSWTTVVLG 131 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~ll~~ 131 (510)
|..+|..|.-++...|++..+-+.|++... .....|+.+...|...|.-..|..+++.-.... |+..+--.++..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 566666666677777777777777777643 344567777777777777777777777665543 333332222222
Q ss_pred -HH-hcCCcchh------------------hHHHHHHHHHHHHhc-----------CchHHHHHHHhhCC---CCChhHH
Q 046354 132 -CA-HNGLIAKL------------------EVISWTTMCTGLERN-----------AMTKLAREYFVQMP---NKDIVAW 177 (510)
Q Consensus 132 -~~-~~~~~~~a------------------~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~---~~~~~~~ 177 (510)
|. +.+..+++ .+..+..+.-+|... ....++.+.+++.. +.|+.+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 22 22333333 223333333333211 12345556666654 3344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHhhh
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS-RFMPNETTCTSILTSCEG 252 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~ 252 (510)
.-+.--|+..++++.|.+..++..+ .+...|..+.-.+...+++.+|+.+.+...+. |.....-....-|.. .
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~--~ 559 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL--T 559 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh--h
Confidence 4444557788888888888777654 56788888888888899999998888776542 210000000000000 0
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhcc-ccccccccChhhHHHHhcccCC-----C-ChhhHHHHHHHHHhcCChh
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYV-FWDWGFQLDVNSARLAFERLEA-----K-DVVSWTAMILAYSNHGHGF 325 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~~~ 325 (510)
+.+.. ....+...++..+- .......++-...++....+.- . .+.++.-+..-....+.
T Consensus 560 ~~~~e------------~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~-- 625 (799)
T KOG4162|consen 560 FNDRE------------EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK-- 625 (799)
T ss_pred cccHH------------HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh--
Confidence 00000 00000000000000 0000111111222222222211 1 11222222222211111
Q ss_pred hHHHHHHHHHHcCCCCCch--------hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 326 QVFRLFARMLKSGTKPDEI--------TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~--------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
.+..-.. |...-+.|... .|......+...+..++|...+.+..+ -.+.....|......+...|.+++
T Consensus 626 ~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 626 SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 0000000 22222222222 234455667788888999888888775 334467777777888899999999
Q ss_pred HHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 398 AMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADY--IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 398 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
|.+.|.......|+ ..+..++...+.+.|+..-|.. ++..+++.+|.++.+|..++.++.+.|+.++|...|+...+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999888885 5588899999999999888888 99999999999999999999999999999999999998874
Q ss_pred hhccccceeE
Q 046354 475 RVKKVASFSQ 484 (510)
Q Consensus 475 ~~~~~p~~~~ 484 (510)
--...|-..|
T Consensus 783 Le~S~PV~pF 792 (799)
T KOG4162|consen 783 LEESNPVLPF 792 (799)
T ss_pred hccCCCcccc
Confidence 4444444444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-10 Score=106.37 Aligned_cols=238 Identities=18% Similarity=0.177 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ----------RNVW-TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTC 243 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 243 (510)
.+...+...|...|+++.|+.++....+ |.+. ..+.+...|...+++++|..+|+++...-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~-------- 271 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR-------- 271 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--------
Confidence 3555577888888888888888876653 2222 23446677888888888888888875410
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCC
Q 046354 244 TSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH 323 (510)
Q Consensus 244 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (510)
+.+|......-..+++.|..+|.+.|+
T Consensus 272 -----------------------------------------------------e~~~G~~h~~va~~l~nLa~ly~~~GK 298 (508)
T KOG1840|consen 272 -----------------------------------------------------EEVFGEDHPAVAATLNNLAVLYYKQGK 298 (508)
T ss_pred -----------------------------------------------------HHhcCCCCHHHHHHHHHHHHHHhccCC
Confidence 000000001112345666666777777
Q ss_pred hhhHHHHHHHHHH-----cCC-CCCc-hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC------CcchhHhHHhHHh
Q 046354 324 GFQVFRLFARMLK-----SGT-KPDE-ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP------RAEHYSCLADILR 390 (510)
Q Consensus 324 ~~~A~~~~~~m~~-----~g~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~ 390 (510)
+++|..++++..+ .|. .|.. .-++.+...|+..+.+++|..+++...+.+.-.| ...+++.|...|.
T Consensus 299 f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~ 378 (508)
T KOG1840|consen 299 FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL 378 (508)
T ss_pred hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 7776666655432 121 2222 2456667778889999999998887766533122 2467889999999
Q ss_pred hcCChHHHHHHHhhCCCC--------CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH----hcCCCCchh---HHHHHH
Q 046354 391 RAGQVKEAMRVVSKMPPH--------ER-DHVVLGALLGACRLHGDVRMADYIGERLI----ELQPSSSGA---YVLSAN 454 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~--------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~---~~~l~~ 454 (510)
..|++++|.++++++... .+ ....++.+...|.+.+++.+|.++|.+.+ ...|++|.+ |..|+.
T Consensus 379 ~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~ 458 (508)
T KOG1840|consen 379 KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAA 458 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 999999999999877532 22 24467888899999999999999999887 445655444 888999
Q ss_pred HHHHcCCChHHHHHHHHHH
Q 046354 455 VHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~ 473 (510)
+|...|++++|.++.+.+.
T Consensus 459 ~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 459 LYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 9999999999999999887
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-10 Score=109.60 Aligned_cols=258 Identities=12% Similarity=-0.021 Sum_probs=171.9
Q ss_pred CCChhHHHHHHHHHH-----hcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHH---------hcCChHHHHHHHHHHHH
Q 046354 171 NKDIVAWNAMITAYV-----DAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYA---------RNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 171 ~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~ 233 (510)
..+...|...+.+-. ..++.++|...|++..+ |+ ...|..+..++. ..+++++|...+++..+
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 445555555554421 12457888888888776 43 345555554443 22447888888888876
Q ss_pred CCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C-Chhh
Q 046354 234 SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-DVVS 310 (510)
Q Consensus 234 ~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~ 310 (510)
. .|+... .+..+...+ ...|++++|...|++..+ | +...
T Consensus 333 l--dP~~~~-------------------------------a~~~lg~~~-----~~~g~~~~A~~~~~~Al~l~P~~~~a 374 (553)
T PRK12370 333 L--DHNNPQ-------------------------------ALGLLGLIN-----TIHSEYIVGSLLFKQANLLSPISADI 374 (553)
T ss_pred c--CCCCHH-------------------------------HHHHHHHHH-----HHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 3 343222 222222233 667888888888888765 3 3557
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhH
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADI 388 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 388 (510)
|..+...+...|++++|...+++..+. .|+.. .+..++..+...|++++|...++++.+. .+| ++..+..+..+
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~ 450 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMF 450 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHH
Confidence 888888999999999999999999885 45533 3333444456678999999999998764 234 45557778888
Q ss_pred HhhcCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (510)
+...|++++|...+.++....|+.. ..+.+...|...| +.|...++++.+..-..+.....+..+|.-.|+-+.+..
T Consensus 451 l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 528 (553)
T PRK12370 451 LSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKM 528 (553)
T ss_pred HHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHH
Confidence 9999999999999999876666544 4455555667666 477777777764332222222336667788888888777
Q ss_pred HHHHHH
Q 046354 468 VRKKME 473 (510)
Q Consensus 468 ~~~~~~ 473 (510)
+ +++.
T Consensus 529 ~-~~~~ 533 (553)
T PRK12370 529 W-NKFK 533 (553)
T ss_pred H-HHhh
Confidence 7 7666
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-08 Score=90.86 Aligned_cols=395 Identities=13% Similarity=0.056 Sum_probs=202.4
Q ss_pred hcCChhhHHHHHHhccccCCC-hhHHHHHHHHHHhcCChhhHHHHHHhhccC---ChhhHHHHHHHHHcCCChHHHHHHH
Q 046354 37 RNHDLPKAEALFRAMPESQRN-IVAESAMIDGYVKAGRVDEARKVFDEIYEG---NVYSWTSLISGYFKARQVDEGRRLF 112 (510)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 112 (510)
..+++..-+.+.+.+.+..|. ..+....--.+...|+-++|.......... +.++|+.+.-.+-...++++|+..|
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 344444444444444443331 222222222333445555555555554432 2234554444444445555555555
Q ss_pred Hhcccc-CCChhhHHHHHHHHHhcCCcchh-------------hHHHHHHHHHHHHhcCchHHHHHHHhhCC-----CCC
Q 046354 113 DRMPLK-LKNVVSWTTVVLGCAHNGLIAKL-------------EVISWTTMCTGLERNAMTKLAREYFVQMP-----NKD 173 (510)
Q Consensus 113 ~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~ 173 (510)
...... +.|...|.-+--.-+..++++.. ....|..++.++.-.|+...|..+++... .|+
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 555444 22233333222222222222222 33344555555666677777777776655 355
Q ss_pred hhHHHHH------HHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 046354 174 IVAWNAM------ITAYVDAGNMAQASELFNLMPQ--RNV-WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244 (510)
Q Consensus 174 ~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 244 (510)
...+... .....+.|..++|.+.+..... -|- ..-..-...+.+.++.++|..++..++. ..||..-|.
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rnPdn~~Yy 256 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RNPDNLDYY 256 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hCchhHHHH
Confidence 5554432 2456778999999988877765 232 2334556678899999999999999987 458888777
Q ss_pred HHHHHhhh-hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHh
Q 046354 245 SILTSCEG-MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSN 320 (510)
Q Consensus 245 ~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 320 (510)
..+..+.. ........ ..+|....+ .....-..=+....-
T Consensus 257 ~~l~~~lgk~~d~~~~l------------------------------------k~ly~~ls~~y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEAL------------------------------------KALYAILSEKYPRHECPRRLPLSVLNG 300 (700)
T ss_pred HHHHHHHHHHhhhHHHH------------------------------------HHHHHHHhhcCcccccchhccHHHhCc
Confidence 76665531 21111111 011211111 000000000000101
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHH----HHHHHHHHHHhhC----------CCCCcchh--Hh
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK----GRKTFNLMSRAYG----------FKPRAEHY--SC 384 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~----------~~~~~~~~--~~ 384 (510)
..-.+..-+++..+.+.|+++-...+.++ +-.....+- +..+...+... | -+|+...| -.
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHH
Confidence 11233344555666666665543333333 222111111 11111111110 1 03333333 34
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
++..+-+.|+++.|...++......|+.. .|..-...+...|+.++|..+++++.+++..+...-..-+.-..++.+.+
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccH
Confidence 66677778888888888888776777544 44444556667778888888888887777666444445666677777777
Q ss_pred HHHHHHHHHH
Q 046354 464 EFAQVRKKME 473 (510)
Q Consensus 464 ~A~~~~~~~~ 473 (510)
+|.++.....
T Consensus 457 eA~~~~skFT 466 (700)
T KOG1156|consen 457 EAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHhh
Confidence 7777776665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-08 Score=85.17 Aligned_cols=277 Identities=11% Similarity=-0.017 Sum_probs=195.3
Q ss_pred HhcCCHHHHHHHHhhC--CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh----hHHHHHHHhhhhhh
Q 046354 185 VDAGNMAQASELFNLM--PQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET----TCTSILTSCEGMLE 255 (510)
Q Consensus 185 ~~~g~~~~A~~~~~~~--~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~ 255 (510)
+..++-..|...+-.+ .. .|+.....+...+...|+.++|...|++.+. +.|+.. .|..++..-++..+
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhh
Confidence 3345544444444332 22 5778889999999999999999999999866 445443 46666665444444
Q ss_pred hhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChh---hHHHHHHHHHhcCChhhHHHHHH
Q 046354 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV---SWTAMILAYSNHGHGFQVFRLFA 332 (510)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~ 332 (510)
............-.....++.. +... -..++++.|..+-++..+.+.. .|-.-...+...|++++|.-.|+
T Consensus 285 ~~~L~~~Lf~~~~~ta~~wfV~-~~~l-----~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTASHWFVH-AQLL-----YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred HHHHHHHHHhhhhcchhhhhhh-hhhh-----hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHH
Confidence 4443333333221111112211 1122 4467788888888887774443 33333456788999999999999
Q ss_pred HHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHH-hHHhh-cCChHHHHHHHhhCCCCCC
Q 046354 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA-DILRR-AGQVKEAMRVVSKMPPHER 410 (510)
Q Consensus 333 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~p 410 (510)
...... +.+-.+|..|+.+|...|.+.+|.-.-+...+. ++.+..+...+. ..+.- ..--++|.+++++.....|
T Consensus 359 ~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 359 TAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred HHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence 988742 456679999999999999999999888887763 455666555442 33322 2235889999999998888
Q ss_pred cHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 411 DHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 411 ~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+-. ..+.+..-|...|..+.++.++++.+...|+. ..+..|+.++...+.+.+|...|....
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 644 66777788889999999999999999998886 689999999999999999999988665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=76.77 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 046354 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251 (510)
Q Consensus 203 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 251 (510)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999999999874
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-08 Score=98.22 Aligned_cols=247 Identities=11% Similarity=0.062 Sum_probs=165.6
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHH
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 99 (510)
.||..+|.++|.-|+..|+.+.|- +|.-|.-. ..+...++.++....+.|+.+.+. +|...+|..|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 799999999999999999999998 77776543 447788999999988999888877 78899999999999
Q ss_pred HcCCChHH---HHHHHHhcccc-CCC---hhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--
Q 046354 100 FKARQVDE---GRRLFDRMPLK-LKN---VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-- 170 (510)
Q Consensus 100 ~~~g~~~~---A~~~~~~m~~~-~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 170 (510)
...||+.. ..+.++.+... .+. ...-..++...+.-+....+ ...+....-.|-++.+.+++..++
T Consensus 94 r~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-----~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 94 RIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA-----ENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH-----HHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 99999765 33322223222 111 11111112211222222222 223334445667788888887776
Q ss_pred CCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAG-NMAQASELFNLMPQ-RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 248 (510)
..+. ....+++-+.... .+++-........+ +++.+|.+++..-..+|+.+.|..++.+|++.|++.+.+.|..++-
T Consensus 169 a~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 169 AWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred cccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 1111 1111233333322 34444444444444 8999999999999999999999999999999999999998888888
Q ss_pred HhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhc
Q 046354 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282 (510)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (510)
+..+......+..-+...|+.|+..++...+...
T Consensus 248 g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 248 GINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred cCccchHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 7655555566666667778888777666555544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-07 Score=81.86 Aligned_cols=439 Identities=13% Similarity=0.027 Sum_probs=230.8
Q ss_pred HHHHHhcCChhhHHHHHHhccccCCChh-HHHH-HHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQRNIV-AESA-MIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVD 106 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~-li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 106 (510)
+.-+...+++..|+.+++--...+...+ ..+. +..++.+.|++++|..++.-+.+ ++...+-.|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 5556678888888888877665432222 2333 34566788889988888887744 45556666666666678888
Q ss_pred HHHHHHHhccccCCChhhHHHHH-HHHHhcCCcchh---------hHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCCh
Q 046354 107 EGRRLFDRMPLKLKNVVSWTTVV-LGCAHNGLIAKL---------EVISWTTMCTGLERNAMTKLAREYFVQMP--NKDI 174 (510)
Q Consensus 107 ~A~~~~~~m~~~~~~~~~~~~ll-~~~~~~~~~~~a---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~ 174 (510)
+|..+-.+.. +....+.++ ....+.++-.+. ...--..++...-..-.+++|++++.... .|+-
T Consensus 109 eA~~~~~ka~----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 109 EAKSIAEKAP----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHhhCC----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 8888776663 333333222 222233332221 11111122223333334555555555554 2222
Q ss_pred hHHHHH-HHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH-
Q 046354 175 VAWNAM-ITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTS- 249 (510)
Q Consensus 175 ~~~~~l-i~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~- 249 (510)
...|.. .-+|.+..-++-+.+++.-..+ || +..-|..+....+.=+-.-|.+-.+++.+.+-.--. -..-++..
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHN 263 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHN 263 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcC
Confidence 222222 2234444444444444443322 22 233344443333332222333333333332211000 00000000
Q ss_pred ---hhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCC---
Q 046354 250 ---CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH--- 323 (510)
Q Consensus 250 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 323 (510)
...-....++. ..-...-+...-.++-.| .+.+++.+|..+.+++...++.-|-.-.-.++..|+
T Consensus 264 LVvFrngEgALqVL----P~L~~~IPEARlNL~iYy-----L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 264 LVVFRNGEGALQVL----PSLMKHIPEARLNLIIYY-----LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred eEEEeCCccHHHhc----hHHHhhChHhhhhheeee-----cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 00000000000 000011112223344444 899999999999988876554433332223333332
Q ss_pred ----hhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHH
Q 046354 324 ----GFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398 (510)
Q Consensus 324 ----~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (510)
..-|.+.|+-.-+.+...|.. .--++..++.-..++++.+.+++.+..- -...|... -.+..+++..|++.+|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATGNYVEA 412 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhcChHHH
Confidence 444666665554555444433 2233344444556788888888888763 33333333 4588999999999999
Q ss_pred HHHHhhCCCCC-CcHHHHHH-HHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046354 399 MRVVSKMPPHE-RDHVVLGA-LLGACRLHGDVRMADYIGERLIELQPSSSGA-YVLSANVHAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 399 ~~~~~~~~~~~-p~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 475 (510)
+++|-.+...+ .|..+|.+ |..+|.+.+.++.|+.++-++ ..|..... .-..++.|.+++++=-|.+.|+.+. .
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE-~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELE-I 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-c
Confidence 99998887332 25556655 455678889999998887653 22332222 4456677999999999999998776 2
Q ss_pred hccccceeEEEeCCe
Q 046354 476 VKKVASFSQIEVKGK 490 (510)
Q Consensus 476 ~~~~p~~~~~~~~~~ 490 (510)
..+.|.. |-+-+|.
T Consensus 490 lDP~pEn-WeGKRGA 503 (557)
T KOG3785|consen 490 LDPTPEN-WEGKRGA 503 (557)
T ss_pred cCCCccc-cCCccch
Confidence 3445554 6665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-09 Score=95.30 Aligned_cols=199 Identities=18% Similarity=0.124 Sum_probs=143.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccc
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (510)
...+..+...+...|++++|...+++..+.. |+.. ..+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~-------------------------------~~~~~la~~~-- 75 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDY-------------------------------LAYLALALYY-- 75 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccH-------------------------------HHHHHHHHHH--
Confidence 3456666667777777777777777665432 2211 1122222333
Q ss_pred cccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-CchhHHHHHHhcCcCCcHH
Q 046354 285 WDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVE 360 (510)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 360 (510)
...|++++|...+++... .+...+..+...+...|++++|...+++.......| ....+..+...+...|+++
T Consensus 76 ---~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 76 ---QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred ---HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 666777777777766654 344567778888999999999999999998743222 3346667778888999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+|...+++..+. .+.+...+..+...+...|++++|...+++.....| +...+..+...+...|+.++|..+.+.+.
T Consensus 153 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 153 KAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999874 334567788899999999999999999998765544 55667777788888999999999988877
Q ss_pred hcCC
Q 046354 440 ELQP 443 (510)
Q Consensus 440 ~~~p 443 (510)
...|
T Consensus 231 ~~~~ 234 (234)
T TIGR02521 231 KLFP 234 (234)
T ss_pred hhCc
Confidence 6544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-10 Score=96.42 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=189.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhh
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE 255 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 255 (510)
+.+..+|.+.|-+.+|.+.|+...+ |-+.||-.|-.+|.+..+++.|+.++.+-.+ ..|-.+||..-+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi----- 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI----- 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH-----
Confidence 6788999999999999999887765 7888898999999999999999999988876 567777765544321
Q ss_pred hhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHH
Q 046354 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFA 332 (510)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (510)
+ -..++.++|.++++...+ .++.+..++...|.-.++++-|+.+|+
T Consensus 300 --------------------------~-----eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 300 --------------------------H-----EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred --------------------------H-----HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHH
Confidence 1 344677888888887766 355666677788889999999999999
Q ss_pred HHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC--cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC
Q 046354 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR--AEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410 (510)
Q Consensus 333 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (510)
++.+.|+ -++..|+.+.-+|.-.++++.++.-|++.... --.|+ ..+|-.+.....-.|++.-|.+.|+-....+|
T Consensus 349 RiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 349 RILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 9999995 46678888888888999999999999998875 44454 46788888888899999999999999886777
Q ss_pred -cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 411 -DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 411 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
....++.|.-.-.+.|+.++|..+++.+....|+-...
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 45689999988899999999999999999888875444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-08 Score=90.54 Aligned_cols=425 Identities=11% Similarity=0.090 Sum_probs=218.0
Q ss_pred ccCCCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMSQ---PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~ 79 (510)
+...|+-++|......... .+.+.|..+.-.+....++++|+..|..+....| |...+..|.-.=++.|+++....
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 3456777777777666653 3456677666666667788888888888777766 45566655555566777777776
Q ss_pred HHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhcccc---CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Q 046354 80 VFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGL 153 (510)
Q Consensus 80 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~ 153 (510)
.-....+ .....|..++.++.-.|+...|..+++...+. .|+...+.-.... .--....
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~---------------Ly~n~i~ 195 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELL---------------LYQNQIL 195 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH---------------HHHHHHH
Confidence 6666644 23356777777777888888888888877765 3444443322211 1123345
Q ss_pred HhcCchHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHH-hcCChHHHH-H
Q 046354 154 ERNAMTKLAREYFVQMPN--KD-IVAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYA-RNGPEGAAM-K 226 (510)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~-~~~~~~~A~-~ 226 (510)
...|..+.|.+.+..-.+ -| ...-..-...+.+.+++++|..++..+.. ||..-|+.....+. +-.+.-+++ .
T Consensus 196 ~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ 275 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKA 275 (700)
T ss_pred HHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 567777888777765541 11 12223445678888999999999998877 66666655554433 333334444 5
Q ss_pred HHHHHHHCC---CCCCHhhHHHHHHHhhhhh-hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcc
Q 046354 227 LLNLMFQSR---FMPNETTCTSILTSCEGML-ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302 (510)
Q Consensus 227 ~~~~m~~~g---~~p~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 302 (510)
+|....+.- -.|-....+.+ .. .++. ..........+.|+++-... +...| +.
T Consensus 276 ly~~ls~~y~r~e~p~Rlplsvl-~~-eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLy------------------k~ 332 (700)
T KOG1156|consen 276 LYAILSEKYPRHECPRRLPLSVL-NG-EELKEIVDKYLRPLLSKGVPSVFKD---LRSLY------------------KD 332 (700)
T ss_pred HHHHHhhcCcccccchhccHHHh-Cc-chhHHHHHHHHHHHhhcCCCchhhh---hHHHH------------------hc
Confidence 555554321 11111111111 00 0000 00011111122222221111 11111 00
Q ss_pred cCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch--hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-c
Q 046354 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI--TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-A 379 (510)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~ 379 (510)
++ .......++..|...-.........+.-. --+|+.. ++..++..+-..|+++.|..+++.... ..|+ +
T Consensus 333 -p~-k~~~le~Lvt~y~~~L~~~~~f~~~D~~~--~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTli 405 (700)
T KOG1156|consen 333 -PE-KVAFLEKLVTSYQHSLSGTGMFNFLDDGK--QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLI 405 (700)
T ss_pred -hh-HhHHHHHHHHHHHhhcccccCCCcccccc--cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHH
Confidence 00 00011111111111111110000000000 0134443 333455556667777777777776663 2443 3
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-------H--
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA-------Y-- 449 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~-- 449 (510)
+.|..=.+.+...|.+++|..++++..+. .||...-.--..-..+.++.++|..+....-+...+.... |
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 44555556666677777777777766655 3344443344555556667777776666654333211000 2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHH
Q 046354 450 VLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..-+.+|.++|++..|++-|..+.
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHH
Confidence 223445667777777766666555
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.7e-10 Score=90.82 Aligned_cols=160 Identities=15% Similarity=0.152 Sum_probs=127.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHH
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADIL 389 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 389 (510)
..-+.-.|.+.|++..|..-+++.++.. +-+..++..+...|.+.|+.+.|.+.|+...+. .| +..+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhHHH
Confidence 4456677888888888888888888863 334457888888888888888888888888753 44 667788888888
Q ss_pred hhcCChHHHHHHHhhCCCCC--C-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHE--R-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (510)
|..|++++|...|++....+ | -..+|..+..+..+.|+.+.|...|++.++++|+.+.....++....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88889999988888876331 1 34578888888888888899999999998888988888888888888889988888
Q ss_pred HHHHHHHH
Q 046354 467 QVRKKMER 474 (510)
Q Consensus 467 ~~~~~~~~ 474 (510)
.++++...
T Consensus 194 ~~~~~~~~ 201 (250)
T COG3063 194 LYLERYQQ 201 (250)
T ss_pred HHHHHHHh
Confidence 88887773
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.6e-09 Score=103.90 Aligned_cols=241 Identities=13% Similarity=0.039 Sum_probs=173.0
Q ss_pred CChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhh
Q 046354 203 RNVWTWNAMIDRYAR-----NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYK 277 (510)
Q Consensus 203 ~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (510)
.+...|...+.+-.. .+++++|...|++..+ ..|+.......+..+.... ...+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~---------~~~g---------- 312 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSM---------AQMG---------- 312 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHH---------HHcC----------
Confidence 555656655555322 2346799999999977 5566544333332210000 0000
Q ss_pred hhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcC
Q 046354 278 CTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354 (510)
Q Consensus 278 l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 354 (510)
.. ...+++++|...+++..+ .+...|..+...+...|++++|...|++..+.+ +.+...+..+...+.
T Consensus 313 ---~~-----~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 383 (553)
T PRK12370 313 ---IF-----DKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLF 383 (553)
T ss_pred ---Cc-----ccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 00 345678899999988876 356688888888999999999999999999863 334557778888899
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCC-CC-cHHHHHHHHHHHHhhCCHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPH-ER-DHVVLGALLGACRLHGDVRMA 431 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A 431 (510)
..|++++|...++++.+. .|+ +..+..++..+...|++++|...+++.... .| ++..+..+...+...|+.++|
T Consensus 384 ~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 384 MAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999864 554 333344455567789999999999987644 35 344567778888899999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
...++++....|.+......++..|...| ++|...++.+.+....
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 461 RKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 99999988888887777888888888888 4888888887744443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-08 Score=86.43 Aligned_cols=380 Identities=13% Similarity=0.068 Sum_probs=212.5
Q ss_pred CCCChHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChhhHHHHHHhcccc-CCChhHHHHHHHHHHhcCChhhHH
Q 046354 6 CTGKVKEATKLFDEMSQ------PDPVSCASMITVFLRNHDLPKAEALFRAMPES-QRNIVAESAMIDGYVKAGRVDEAR 78 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~ 78 (510)
...++..|+.+++.-.. .+...| +...+.+.|++++|..+++.+... .|+...+-.|.-++.-.|.+.+|.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 45677888888876652 122223 445567888888888888876543 566666666666666677777777
Q ss_pred HHHHhhccC-----------------------------ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHH
Q 046354 79 KVFDEIYEG-----------------------------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVV 129 (510)
Q Consensus 79 ~~~~~~~~~-----------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll 129 (510)
.+..+..+. ...--.+|.+..-..-++.+|++++.+.....|+-...|..+
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 776665331 111122333333333466777777777776555544444433
Q ss_pred HHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCC-hhHHHHHHHHHHh--cCC---------------
Q 046354 130 LGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKD-IVAWNAMITAYVD--AGN--------------- 189 (510)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~--~g~--------------- 189 (510)
..| |.+..-++.+.++++--. -|| ....|.......+ .|+
T Consensus 192 ALC--------------------yyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 192 ALC--------------------YYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHH--------------------HHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 332 223333333333322211 121 1122222111111 111
Q ss_pred ------------------HHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 046354 190 ------------------MAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251 (510)
Q Consensus 190 ------------------~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 251 (510)
-+.|++++-.+.+.-+..--.|+--|.+.++..+|..+.+++.. ..|-......+..+..
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAAL 329 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHh
Confidence 12233333222221223333455567788888888888877622 3343333333333221
Q ss_pred hhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-----CChhhHHHHHHHHHhcCChhh
Q 046354 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-----KDVVSWTAMILAYSNHGHGFQ 326 (510)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~ 326 (510)
.... +....+.-|.+.|.-... .++.--.++...+.-..++++
T Consensus 330 ---------------------------GQe~-----gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 330 ---------------------------GQET-----GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred ---------------------------hhhc-----CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 1111 233344556666654443 122234556666666778888
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 327 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
++-.++.....=...|...| .+.++.+..|++.+|.++|-.+... .++.+..-...|.++|.+.++++-|.+++-++-
T Consensus 378 Vl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 378 VLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 88888887775333333333 4678888889999999988777643 333333333567788899999999998887776
Q ss_pred CCCC-cHHHH-HHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 407 PHER-DHVVL-GALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 407 ~~~p-~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.| +..+. ..+..-|.+.+.+--|-+.|..+-.++|..
T Consensus 456 --t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 456 --TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred --CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 44 33333 334456888888888888888887777764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.7e-08 Score=92.14 Aligned_cols=255 Identities=16% Similarity=0.106 Sum_probs=150.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
++..+...|-..|++++|++.+++..+ |+ +..|..-...+-+.|++.+|.+.++..+... +.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~------------- 260 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--LA------------- 260 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hh-------------
Confidence 446667888899999999999998876 44 5678888899999999999999999887632 22
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChh----------hH--HHHHHHHHh
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV----------SW--TAMILAYSN 320 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~--~~l~~~~~~ 320 (510)
|..+-+..+..+ .++|++++|..++.....++.. .| .-...+|.+
T Consensus 261 ------------------DRyiNsK~aKy~-----LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 261 ------------------DRYINSKCAKYL-----LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred ------------------hHHHHHHHHHHH-----HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 222222333333 8889999999998877764421 22 335678999
Q ss_pred cCChhhHHHHHHHHHHc--CC---CCCch----------hHHHHHHhcCcCC---c----HHHHHHHHHHHHHhhCCCCC
Q 046354 321 HGHGFQVFRLFARMLKS--GT---KPDEI----------TFVGVLSDCSHAG---L----VEKGRKTFNLMSRAYGFKPR 378 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~--g~---~p~~~----------~~~~li~~~~~~g---~----~~~a~~~~~~~~~~~~~~~~ 378 (510)
.|++..|++-|....+. .+ +-|-+ +|..+++..-+.. . ...|.+++-.+.........
T Consensus 318 ~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~ 397 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQG 397 (517)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 99999998877666543 11 22222 3333333221111 1 13344555444432100000
Q ss_pred cch-----------hHhHHhHH---hhcCChHHHHHHHhh-----------CCC---CCCcHHHHHHHHHHHHhh-CCHH
Q 046354 379 AEH-----------YSCLADIL---RRAGQVKEAMRVVSK-----------MPP---HERDHVVLGALLGACRLH-GDVR 429 (510)
Q Consensus 379 ~~~-----------~~~l~~~~---~~~g~~~~A~~~~~~-----------~~~---~~p~~~~~~~l~~~~~~~-~~~~ 429 (510)
... -..+..-. .+...-+++...-.+ ... ...|.... ...+.+. .-.+
T Consensus 398 ~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~---GekL~~t~dPLe 474 (517)
T PF12569_consen 398 EEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPL---GEKLLKTEDPLE 474 (517)
T ss_pred cccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCcc---HHHHhcCCcHHH
Confidence 000 00000000 001111111111100 000 01122211 1222333 4668
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
+|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 475 ~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 475 EAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 899999999999999999999999999999999999887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-08 Score=96.62 Aligned_cols=85 Identities=15% Similarity=0.038 Sum_probs=72.3
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
+++.+|.+++..-...|+.+.|..++.+|++.|++.+.+-|..|+-+ .++...+..+++.|... |+.|+..|+...
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHH
Confidence 78889999999999999999999999999999999999988888765 77788888888888877 999999998776
Q ss_pred HhHHhhcCC
Q 046354 386 ADILRRAGQ 394 (510)
Q Consensus 386 ~~~~~~~g~ 394 (510)
+..+.+.|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 666665444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-08 Score=90.74 Aligned_cols=426 Identities=13% Similarity=0.014 Sum_probs=258.2
Q ss_pred ccCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCCh-hHHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI-VAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~ 79 (510)
....|+++.|+..|-+.. ++|...|+.-..+|+..|++++|++--.+-.+..|+. ..|+..-.++.-.|++++|..
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 456899999999999886 5677888888899999999999999988888888875 578889999999999999999
Q ss_pred HHHhhccC---ChhhHHHHHHHHHcCC---ChHHHHHHHHhcccc-----CCChhhHHHHHHHHHhcCCcchhhHHHHHH
Q 046354 80 VFDEIYEG---NVYSWTSLISGYFKAR---QVDEGRRLFDRMPLK-----LKNVVSWTTVVLGCAHNGLIAKLEVISWTT 148 (510)
Q Consensus 80 ~~~~~~~~---~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 148 (510)
-|.+-++. |...++.|..++.... +.-.--.++..+... ......|..++..+-+...--...-. ...
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~-d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN-DPR 170 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc-cHH
Confidence 99998663 4456777777772110 000000111111111 00011222233222111100000000 001
Q ss_pred HHHHHHhcCchHHH-HHHHhh-----CCCC---------C-------------hhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 046354 149 MCTGLERNAMTKLA-REYFVQ-----MPNK---------D-------------IVAWNAMITAYVDAGNMAQASELFNLM 200 (510)
Q Consensus 149 l~~~~~~~~~~~~a-~~~~~~-----~~~~---------~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~ 200 (510)
++.+.......+.- ...-.. +..| . ..-...+.+...+..+++.|++-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11111110000000 000000 0001 0 112455777778888888898888877
Q ss_pred CC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhh
Q 046354 201 PQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKC 278 (510)
Q Consensus 201 ~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 278 (510)
.+ .++.-++....+|...|.+.++...-.+..+.|... ..-|+.+-.++. .+
T Consensus 251 ~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~-------------------------r~ 304 (539)
T KOG0548|consen 251 LELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALA-------------------------RL 304 (539)
T ss_pred HhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHH-------------------------Hh
Confidence 66 344446677778888888887777766666655221 122222222211 12
Q ss_pred hhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCC
Q 046354 279 TCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAG 357 (510)
Q Consensus 279 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g 357 (510)
...| .+.++++.+...|.+...+... -+...+....+++.+......- +.|... -...-...+.+.|
T Consensus 305 g~a~-----~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAY-----TKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhh-----hhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 3344 6778888888888775442111 1122233445555555554443 233331 1222255677889
Q ss_pred cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHH
Q 046354 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGE 436 (510)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~ 436 (510)
++..|...+.++++. .+-|...|..-.-+|.+.|.+..|++-.+...+..|+ ...|..=..++....+++.|.+.|+
T Consensus 373 dy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999875 3557889999999999999999999988888877664 4466666667777789999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 437 RLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 437 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
+.++++|++......+..++..........++.+
T Consensus 451 eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 9999999987777777776665333333444433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-09 Score=94.16 Aligned_cols=251 Identities=10% Similarity=0.018 Sum_probs=161.9
Q ss_pred HHhcCchHHHHHHHhhCC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 046354 153 LERNAMTKLAREYFVQMP-NK--DIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLN 229 (510)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 229 (510)
+.-.|++..++.-.+.-. .+ +......+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-++
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~ 90 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELK 90 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445677777764443111 11 233455667888888888876665555455666666555555544345556655555
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChh
Q 046354 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVV 309 (510)
Q Consensus 230 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 309 (510)
+....+..++..++. ++.+ ..+ ...|++++|.+++... .+..
T Consensus 91 ~~~~~~~~~~~~~~~-~~~A------------------------------~i~-----~~~~~~~~AL~~l~~~--~~lE 132 (290)
T PF04733_consen 91 ELLADQAGESNEIVQ-LLAA------------------------------TIL-----FHEGDYEEALKLLHKG--GSLE 132 (290)
T ss_dssp HCCCTS---CHHHHH-HHHH------------------------------HHH-----CCCCHHHHHHCCCTTT--TCHH
T ss_pred HHHHhccccccHHHH-HHHH------------------------------HHH-----HHcCCHHHHHHHHHcc--Cccc
Confidence 544333332222222 2211 122 7789999999988876 4566
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcC----cCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS----HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
.....+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ....+..|..+|+++.+ ...+++.+.+.+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~ 207 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGL 207 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHH
Confidence 7777888999999999999999999864 334 44444544432 23468899999999876 456788888888
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH-HHHHHHHHHHHhcCCCCc
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV-RMADYIGERLIELQPSSS 446 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~~~ 446 (510)
+.+....|++++|.+++.+..+..| ++.+...++......|+. +.+.+.++++....|+++
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 8899999999999999988876766 566777777777777777 677888888888888875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-08 Score=95.88 Aligned_cols=242 Identities=13% Similarity=0.130 Sum_probs=173.8
Q ss_pred HhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC----------CCChhH-HHHHHHHHHhcCCHHHHHHHHhhCC
Q 046354 133 AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP----------NKDIVA-WNAMITAYVDAGNMAQASELFNLMP 201 (510)
Q Consensus 133 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~ 201 (510)
...|+.+..-..+...+...|...|+++.|..+++... .|.+.+ .+.+...|...+++++|..+|+++.
T Consensus 189 ~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 189 KGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444455566668899999999999999988876 233332 3346778999999999999998876
Q ss_pred C----------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCc
Q 046354 202 Q----------R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQ 270 (510)
Q Consensus 202 ~----------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 270 (510)
. | -..+++.|..+|.+.|++++|...++...+.
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------------------------------ 312 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------------------------------ 312 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH------------------------------------
Confidence 4 1 2356888888999999999999998887541
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC---CCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCCc
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDV-VSWTAMILAYSNHGHGFQVFRLFARMLKS---GTKPDE 343 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~ 343 (510)
+++... +.+ ..++.+...+...+++++|..+++...+. -+.++.
T Consensus 313 -----------------------------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 313 -----------------------------YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred -----------------------------HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 000000 111 12455566777788888888887766542 123332
Q ss_pred ----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhh----C-CCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-----
Q 046354 344 ----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAY----G-FKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH----- 408 (510)
Q Consensus 344 ----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 408 (510)
.+++.+...|...|++++|.++++++.... + ..+ ....++.|...|.+.+++.+|.++|.+....
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 478888899999999999999998887653 1 112 2445678888999999999888888765431
Q ss_pred --CCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 409 --ERD-HVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 409 --~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
.|+ ..+|..|...|...|+++.|+++.+.+.
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 343 4489999999999999999999999887
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-07 Score=90.87 Aligned_cols=407 Identities=11% Similarity=0.034 Sum_probs=248.5
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHhcccc-CCChhHHHHHHHHHHhcCChhhHHHHHHhhcc----C-ChhhHHHHH
Q 046354 23 PDPVSCASMITVFLRNHDLPKAEALFRAMPES-QRNIVAESAMIDGYVKAGRVDEARKVFDEIYE----G-NVYSWTSLI 96 (510)
Q Consensus 23 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~li 96 (510)
-++..|..|.-++.+.|+++.+.+.|++.... .-....|+.+...+...|.-..|..+++.-.. | +...+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 36677777777788888888888888876543 23556777788888888888888888877733 2 233344444
Q ss_pred HHHH-cCCChHHHHHHHHhcccc------CCChhhHHHHHHHHHhc------------------------CCcchhhHHH
Q 046354 97 SGYF-KARQVDEGRRLFDRMPLK------LKNVVSWTTVVLGCAHN------------------------GLIAKLEVIS 145 (510)
Q Consensus 97 ~~~~-~~g~~~~A~~~~~~m~~~------~~~~~~~~~ll~~~~~~------------------------~~~~~a~~~~ 145 (510)
..|. +-+..++++..-.+.... ......+..+.-+|... -.++..|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 4444 345566665555555441 11112222222222111 1111115556
Q ss_pred HHHHHHHHHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhc
Q 046354 146 WTTMCTGLERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARN 218 (510)
Q Consensus 146 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 218 (510)
...+.--|.-.++.+.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+.... + |-.....-+..-..-
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 6666667778888888888887766 55778899999999999999999999887654 2 222222223333346
Q ss_pred CChHHHHHHHHHHHHC--CCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCC------c-chhhhhhhhhhcccccccc
Q 046354 219 GPEGAAMKLLNLMFQS--RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE------Q-ETSLTYKCTCHYVFWDWGF 289 (510)
Q Consensus 219 ~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~l~~~~~~~~~~~ 289 (510)
++.++++.....+..- ...|-..+.. .......+.|.. . ....+..+.... . .-.+
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~-------------~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~-a-~~~~ 625 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLD-------------EGKLLRLKAGLHLALSQPTDAISTSRYLSSLV-A-SQLK 625 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhh-------------hhhhhhhhcccccCcccccccchhhHHHHHHH-H-hhhh
Confidence 6777776655554320 0000000000 000000000000 0 000111110000 0 0011
Q ss_pred ccChhhHHHHhcccCCCC------hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHH
Q 046354 290 QLDVNSARLAFERLEAKD------VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 363 (510)
.-..+.....+.....|+ ...|......+...++.++|...+.+..+. .+-....|......+...|..++|.
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHH
Confidence 111111111111112222 124667778888999999999998888774 3444456666667778889999999
Q ss_pred HHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHH--HHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 364 KTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMR--VVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 364 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+.|..... +.| .+....++..++.+.|+..-|.. ++..+.+.+| ++..|..+...+.+.|+.++|...|..+.
T Consensus 705 ~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 705 EAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99988874 466 57778899999999998887777 9999988877 78899999999999999999999999999
Q ss_pred hcCCCCchh
Q 046354 440 ELQPSSSGA 448 (510)
Q Consensus 440 ~~~p~~~~~ 448 (510)
++++.+|.-
T Consensus 782 qLe~S~PV~ 790 (799)
T KOG4162|consen 782 QLEESNPVL 790 (799)
T ss_pred hhccCCCcc
Confidence 998877643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-08 Score=88.13 Aligned_cols=206 Identities=10% Similarity=-0.051 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
.|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|...|+...+. .|+
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~------------- 130 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPT------------- 130 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-------------
Confidence 455555566666666666666655544 23455666666666666666666666665441 121
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (510)
+..+|..+..++...|++++|.+.|+
T Consensus 131 ------------------------------------------------------~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 131 ------------------------------------------------------YNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred ------------------------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33456667777888899999999999
Q ss_pred HHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHH--HHHHhhCCCC--
Q 046354 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA--MRVVSKMPPH-- 408 (510)
Q Consensus 333 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~~~~-- 408 (510)
...+. .|+..........+...++.++|...++.... ..+|+...+ .+. ....|+..++ .+.+.+..+.
T Consensus 157 ~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~ 229 (296)
T PRK11189 157 AFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNT 229 (296)
T ss_pred HHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcH
Confidence 98874 45443222222223456789999999977654 333433222 222 2335555443 3223222222
Q ss_pred --CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC-CCchhHHHHHHHHH
Q 046354 409 --ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQP-SSSGAYVLSANVHA 457 (510)
Q Consensus 409 --~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~ 457 (510)
.| ....|..+...+...|++++|...|+++++.+| +.+..-..++....
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 22 345788899999999999999999999999987 44444444444433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-08 Score=91.85 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc----C----------CCCCch--hHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKS----G----------TKPDEI--TFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
.+|+.+-..|....+..-...++...... | -+|+.. ++..+.+.|...|++++|+++.++....
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34555555555444444444444444322 1 133332 4466677788999999999999999864
Q ss_pred hCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCC---
Q 046354 373 YGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQ--PSS--- 445 (510)
Q Consensus 373 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~--- 445 (510)
.|+ +..|..-++.+-+.|++++|.+.++.....++ |...-+..+..+.+.|+.++|.+++....+.+ |..
T Consensus 224 ---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 224 ---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred ---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 554 77888889999999999999999999987777 55566666777889999999999999876444 222
Q ss_pred ----chhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 446 ----SGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 446 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.......+.+|.+.|++..|++.|..+.+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11135577889999999999999988774
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=83.54 Aligned_cols=201 Identities=13% Similarity=0.065 Sum_probs=167.6
Q ss_pred hhhhhhccccccccccChhhHHHHhcccCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHh
Q 046354 276 YKCTCHYVFWDWGFQLDVNSARLAFERLEAK---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352 (510)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 352 (510)
..+...| ...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|....-
T Consensus 39 lqLal~Y-----L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 39 LQLALGY-----LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHH-----HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence 3455566 8999999999999999873 34589999999999999999999999998852 3445677777788
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMA 431 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A 431 (510)
+|..|.+++|.+.|+..........-..+|..+.-+..+.|+++.|...|++..+..| .+.+.-.+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 8999999999999999998733333567888999999999999999999999998877 456778888889999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccce
Q 046354 432 DYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASF 482 (510)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 482 (510)
...++......+.........+.+-.+.|+-+.|-++-..+.+..|-.+.+
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 999999987777666777788888999999999999988887666655443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-06 Score=82.70 Aligned_cols=215 Identities=11% Similarity=0.117 Sum_probs=130.0
Q ss_pred CcccCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhcccc-----------CCChhHHHHHHHHHHh
Q 046354 2 SQFGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPES-----------QRNIVAESAMIDGYVK 70 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----------~p~~~~~~~li~~~~~ 70 (510)
++|...|+.+.|.+-++.+. +...|..+.+.|.+.++++-|.-.+..|... .|+ ..-....-....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 35667788888877776653 4567888899998888888888777777543 232 222222233344
Q ss_pred cCChhhHHHHHHhhcc-----------------------CC----hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChh
Q 046354 71 AGRVDEARKVFDEIYE-----------------------GN----VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123 (510)
Q Consensus 71 ~~~~~~A~~~~~~~~~-----------------------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 123 (510)
.|..++|..++.+-.+ .| ..||......+-..+|.+.|++.|++... |--.
T Consensus 813 LgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~--hafe 890 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV--HAFE 890 (1416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC--hHHH
Confidence 4555555555544322 11 13455555555556666666666665433 1111
Q ss_pred hHHH------HHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 046354 124 SWTT------VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELF 197 (510)
Q Consensus 124 ~~~~------ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 197 (510)
.+.. -+.-|.+... +...|.-....+...|+.+.|+.+|... .-|.++++..|-.|+.++|-++-
T Consensus 891 v~rmL~e~p~~~e~Yv~~~~----d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRRKR----DESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HHHHHHhChHHHHHHHHhcc----chHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchHHHHHH
Confidence 1111 1122222211 4455666666666777777777777643 34666677777777777777766
Q ss_pred hhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 198 NLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 198 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
++- .|......+...|-..|++.+|..+|.+.+
T Consensus 962 ~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 962 EES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred Hhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 554 366667788899999999999999998874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-08 Score=92.18 Aligned_cols=186 Identities=15% Similarity=0.090 Sum_probs=135.4
Q ss_pred hhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-chhHHHHH
Q 046354 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-EITFVGVL 350 (510)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li 350 (510)
+..+...| ...|+.+.|...|++..+ .+...|+.+...+...|++++|...|++..+. .|+ ..++..+.
T Consensus 67 ~~~~g~~~-----~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg 139 (296)
T PRK11189 67 HYERGVLY-----DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRG 139 (296)
T ss_pred HHHHHHHH-----HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 44444555 788999999999988876 35678999999999999999999999999974 455 45777888
Q ss_pred HhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHH
Q 046354 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~ 429 (510)
.++...|++++|.+.++...+. .|+..............+++++|...+++.... .|+...+ . ......|+..
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~--~~~~~lg~~~ 213 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-N--IVEFYLGKIS 213 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-H--HHHHHccCCC
Confidence 8888999999999999999864 454332222233345678899999999665422 3332222 2 2223345543
Q ss_pred HHHHHHHHHH-------hcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 430 MADYIGERLI-------ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 430 ~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.+ ..++.+. ++.|+.+..|..++.++...|++++|+..|++...
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 2334333 55666778899999999999999999999998873
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=94.30 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=166.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccC
Q 046354 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292 (510)
Q Consensus 213 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (510)
.-+.+.|++.+|.-.|+..++.. +.+...|..|.... ...++
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd---------------------------------P~haeAW~~LG~~q-----aENE~ 334 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD---------------------------------PQHAEAWQKLGITQ-----AENEN 334 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC---------------------------------hHHHHHHHHhhhHh-----hhccc
Confidence 34567888888888888775532 23334444444444 66667
Q ss_pred hhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-----C---CchhHHHHHHhcCcCCcHHH
Q 046354 293 VNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-----P---DEITFVGVLSDCSHAGLVEK 361 (510)
Q Consensus 293 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----p---~~~~~~~li~~~~~~g~~~~ 361 (510)
-..|+..+.+..+ .|....-.|.-+|...|.-..|+..|+.-+....+ + +...-.. ..+........
T Consensus 335 E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~ 412 (579)
T KOG1125|consen 335 EQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAH 412 (579)
T ss_pred hHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHH
Confidence 7777777777665 35567777778888999888999988877654211 0 0000000 22333444556
Q ss_pred HHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 046354 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
..++|-++....+..+|+.+...|.-.|--.|.+++|...|+.+....| |...||.|...++...+.++|+..|.++++
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 6677766666546668999999999999999999999999999998888 667999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.|.-......|+-.|...|.+++|.+.|=...
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999876665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-06 Score=81.48 Aligned_cols=137 Identities=17% Similarity=0.215 Sum_probs=76.2
Q ss_pred hhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcC
Q 046354 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCS 354 (510)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 354 (510)
|..+...| +..|+++.|+++|-+.. .++-.|..|.+.|+++.|.++-.+. .|.......|..-..-+-
T Consensus 768 y~~iadhy-----an~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 768 YGEIADHY-----ANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLD 835 (1636)
T ss_pred chHHHHHh-----ccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHH
Confidence 34445556 77888888888876543 3555677788888888887775443 343444455555555556
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc--HHHHHHHHHHHHhhCCHHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD--HVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~ 432 (510)
..|++.+|.+++-.+. .|+ ..|.+|-+.|..+..+++.++-. |+ ..|-..+..-+...|+...|+
T Consensus 836 ehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h---~d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHH---GDHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred hhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhC---hhhhhHHHHHHHHHHHhccChhHHH
Confidence 6666666666553331 122 23456666666666666665543 21 123333344444444444444
Q ss_pred HHHH
Q 046354 433 YIGE 436 (510)
Q Consensus 433 ~~~~ 436 (510)
.-|-
T Consensus 903 ~~fl 906 (1636)
T KOG3616|consen 903 EHFL 906 (1636)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-06 Score=77.88 Aligned_cols=216 Identities=10% Similarity=0.037 Sum_probs=131.9
Q ss_pred HHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCCh
Q 046354 95 LISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI 174 (510)
Q Consensus 95 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 174 (510)
=++.+...|++++|.....++....||..+ ++..-+-+..+.+.++.|+.+.+.-.. .
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~--------------------a~~cKvValIq~~ky~~ALk~ikk~~~--~ 75 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDED--------------------AIRCKVVALIQLDKYEDALKLIKKNGA--L 75 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHh--------------------hHhhhHhhhhhhhHHHHHHHHHHhcch--h
Confidence 356677889999999999999887555322 222233445666777888766654321 1
Q ss_pred hHHHH----HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhh-HHHHHHH
Q 046354 175 VAWNA----MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT-CTSILTS 249 (510)
Q Consensus 175 ~~~~~----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~ 249 (510)
.+++. -.-+..+.|..|+|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++..--..- -..++.+
T Consensus 76 ~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred hhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 12222 234556889999999999966666666677777888999999999999999977765432222 2222222
Q ss_pred hhhhhhhhHHHHHHHHhCCCc--chhhhhhhhhhccccccccccChhhHHHHhcccC--------CCCh-----h-----
Q 046354 250 CEGMLENMLAHALAIRLGFEQ--ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE--------AKDV-----V----- 309 (510)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~-----~----- 309 (510)
..... .. ........+ +-.........+ ...|++.+|+++++... ..+. .
T Consensus 156 ~a~l~-~~----~~q~v~~v~e~syel~yN~Ac~~-----i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 156 AAALQ-VQ----LLQSVPEVPEDSYELLYNTACIL-----IENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHhhh-HH----HHHhccCCCcchHHHHHHHHHHH-----HhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 21111 10 111111111 222333334445 78899999999998772 1111 0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (510)
.---|.-.+...|+.++|..++...++.. ++|.
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADE 258 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCc
Confidence 11224455677899999999999888874 4443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-06 Score=72.64 Aligned_cols=322 Identities=12% Similarity=0.062 Sum_probs=200.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHhccccCCCh-hHHHHHHHHHHhcCChhhHHHHHHhhcc--CChh-hHHHHHHHHH
Q 046354 25 PVSCASMITVFLRNHDLPKAEALFRAMPESQRNI-VAESAMIDGYVKAGRVDEARKVFDEIYE--GNVY-SWTSLISGYF 100 (510)
Q Consensus 25 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~ 100 (510)
+.-...+...+...|++..|+.-|....+.+|+. .++-.-...|...|+-..|+.-++.+++ ||.. +...-...+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 3444556778888999999999999999876654 3455566788889999999988888855 5543 2223345678
Q ss_pred cCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHH
Q 046354 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAW 177 (510)
Q Consensus 101 ~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~ 177 (510)
+.|.+++|..=|+.+.+..|+..+-. .+..+.-..+ .-......+..+...|+...|++....+. +-|...|
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~--e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQ--EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHH--HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 99999999999999988755432211 1111111010 12233344556667888888888888877 5577778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhh
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 254 (510)
..-..+|...|++..|+.=++...+ .++.++..+-..+...|+.+.++...++-++ +.||...+-..-..+.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklk--- 267 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLK--- 267 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHH---
Confidence 8888999999999998776655543 6777777788888899999999888888766 4555443222211110
Q ss_pred hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 046354 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARM 334 (510)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 334 (510)
+..+.++. +......+++.++++..+..
T Consensus 268 ----------------------------------------Kv~K~les------------~e~~ie~~~~t~cle~ge~v 295 (504)
T KOG0624|consen 268 ----------------------------------------KVVKSLES------------AEQAIEEKHWTECLEAGEKV 295 (504)
T ss_pred ----------------------------------------HHHHHHHH------------HHHHHhhhhHHHHHHHHHHH
Confidence 00000000 11223445566666666655
Q ss_pred HHcCCCCCchh---HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC
Q 046354 335 LKSGTKPDEIT---FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPHER 410 (510)
Q Consensus 335 ~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (510)
.+......... +..+-+++...+++.+|++.-.+... +.|+ +.++.--.++|.-...++.|+.-|+...+..+
T Consensus 296 lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 296 LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 55321111222 22333444556666666666666653 3443 55665556666666666667666666665544
Q ss_pred c
Q 046354 411 D 411 (510)
Q Consensus 411 ~ 411 (510)
+
T Consensus 373 s 373 (504)
T KOG0624|consen 373 S 373 (504)
T ss_pred c
Confidence 3
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=87.12 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=129.1
Q ss_pred ccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch-------hHHHHHHhcCcCCc
Q 046354 288 GFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-------TFVGVLSDCSHAGL 358 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~li~~~~~~g~ 358 (510)
-+..+++.|.+.+..... .++.-++....+|...|.+..+...-....+.|-. ... .+..+..++.+.++
T Consensus 235 ykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 555566666666666554 33344555666677777666665555554444311 111 12223335566677
Q ss_pred HHHHHHHHHHHHHhhCCCCCcch-------------------------hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cH
Q 046354 359 VEKGRKTFNLMSRAYGFKPRAEH-------------------------YSCLADILRRAGQVKEAMRVVSKMPPHER-DH 412 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 412 (510)
++.+..+|.+.... ...|+... ...-...+.+.|++..|+..|.+++...| |.
T Consensus 314 ~~~ai~~~~kaLte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 314 YEGAIKYYQKALTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred HHHHHHHHHHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 77888877776665 33333111 01113446678999999999999987888 67
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|.....+|.+.|.+..|..-.+..++++|+.+..|..-+.++....+|++|.+.|++..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999998655
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-06 Score=81.63 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=50.5
Q ss_pred HHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHH
Q 046354 31 MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRR 110 (510)
Q Consensus 31 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 110 (510)
.+.+-.....+.+|+.+++.+..+....--|..+..-|...|+++.|.++|.+.- .++-.|.+|.+.|+++.|.+
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 3445556666677777776666654444455566666666777777776665542 24455666677777777766
Q ss_pred HHHhccc
Q 046354 111 LFDRMPL 117 (510)
Q Consensus 111 ~~~~m~~ 117 (510)
+-++...
T Consensus 813 la~e~~~ 819 (1636)
T KOG3616|consen 813 LAEECHG 819 (1636)
T ss_pred HHHHhcC
Confidence 6665554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=89.23 Aligned_cols=248 Identities=11% Similarity=0.051 Sum_probs=161.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh
Q 046354 181 ITAYVDAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 256 (510)
++-+.-.|++..++.-.+ ... .+......+.+++...|+++.++ .++.... .|.......+...+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~------ 76 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYL------ 76 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHH------
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHH------
Confidence 344566788888886555 222 23344556677888888877544 3333322 44433332222211
Q ss_pred hHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-C----ChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-K----DVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
...++-+.+..-++.... + +....-.....+...|++++|++++
T Consensus 77 -------------------------------~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l 125 (290)
T PF04733_consen 77 -------------------------------SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLL 125 (290)
T ss_dssp -------------------------------CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_pred -------------------------------hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 222334444444443332 1 2222223334566789999999988
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCChHHHHHHHhhCCC
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQVKEAMRVVSKMPP 407 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 407 (510)
+.- .+.......+..+.+.++++.|.+.++.|.+ +..| .+...++.++.. .+.+.+|..+|+++.+
T Consensus 126 ~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~ 195 (290)
T PF04733_consen 126 HKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD 195 (290)
T ss_dssp TTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC
T ss_pred Hcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 642 3456667788899999999999999999974 3333 444455555543 3469999999999876
Q ss_pred C-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC-hHHHHHHHHHHHhhcccc
Q 046354 408 H-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW-DEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 408 ~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~p 480 (510)
. .+++.+.+.+..++...|++++|..+++++++.+|+++.+...++.+....|+. +.+.+++++++...+..|
T Consensus 196 ~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 196 KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6 568889999999999999999999999999999999999999999999999988 667888888775444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7e-08 Score=81.20 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=118.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (510)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 4568888998887554432221 11 1223467778888888887763 45688899999999999999
Q ss_pred hHHHHHHHhhCCCCCC-cHHHHHHHHHHH-HhhCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 395 VKEAMRVVSKMPPHER-DHVVLGALLGAC-RLHGD--VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
+++|...+++..+..| +...+..+..++ ...|+ .++|.++++++++.+|+++..+..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988877 666777777764 66677 5999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc
Q 046354 471 KMERRVKK 478 (510)
Q Consensus 471 ~~~~~~~~ 478 (510)
++.+..++
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99854444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-07 Score=83.75 Aligned_cols=164 Identities=10% Similarity=-0.030 Sum_probs=115.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcc--
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE-- 380 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 380 (510)
....+-.+...+...|++++|...|+++... .|+. ..+..+..++...|++++|...++.+.+.+ +.++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 3445666667777788888888888877664 2332 345556667777788888888888887642 21222
Q ss_pred -hhHhHHhHHhhc--------CChHHHHHHHhhCCCCCCcHH-HH-----------------HHHHHHHHhhCCHHHHHH
Q 046354 381 -HYSCLADILRRA--------GQVKEAMRVVSKMPPHERDHV-VL-----------------GALLGACRLHGDVRMADY 433 (510)
Q Consensus 381 -~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~~~~~~A~~ 433 (510)
.+..+..++... |++++|.+.++++....|+.. .+ ..+...+.+.|++.+|..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 344444444443 667778888877765555432 21 134556778899999999
Q ss_pred HHHHHHhcCCCCc---hhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 434 IGERLIELQPSSS---GAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 434 ~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.++++++..|+++ ..+..++.++...|++++|..+++.+..
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999998877654 5689999999999999999999998874
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-05 Score=76.32 Aligned_cols=365 Identities=12% Similarity=0.084 Sum_probs=213.0
Q ss_pred CChhhHHHHHH--HHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc------------CC
Q 046354 23 PDPVSCASMIT--VFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE------------GN 88 (510)
Q Consensus 23 ~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------~~ 88 (510)
-|..+-..++. .|..-|+.+.|.+-.+.+.. ..+|..+.+.|.+.++.|-|.-.+-.|.. .+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS----~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS----DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh----hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 45566666664 35677888888877766654 57888999999999999888888877722 12
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh-----------hHHHHHHHHHHHHhcC
Q 046354 89 VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-----------EVISWTTMCTGLERNA 157 (510)
Q Consensus 89 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a-----------~~~~~~~l~~~~~~~~ 157 (510)
..+-.-+.-.....|.+++|..+|.+-++ |..|=..|-..|.+++| -..+|...+.-+...+
T Consensus 800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 800 EEDEAKVAVLAIELGMLEEALILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 23333344445677899999999988766 33333344455555555 2334444555555555
Q ss_pred chHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046354 158 MTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237 (510)
Q Consensus 158 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 237 (510)
+.+.|++.|++...+-..++..|. .++.......+.+. |...|.-....+-..|+.+.|+.+|....+.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~--- 941 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSSAKDY--- 941 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHHhhhh---
Confidence 556666655554333222222221 12222333333333 3344444556666788888888888877542
Q ss_pred CCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHH
Q 046354 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317 (510)
Q Consensus 238 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 317 (510)
..++... |-.|+.++|-++-++- .|..+...+...
T Consensus 942 --------------------------------------fs~VrI~-----C~qGk~~kAa~iA~es--gd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 942 --------------------------------------FSMVRIK-----CIQGKTDKAARIAEES--GDKAACYHLARM 976 (1416)
T ss_pred --------------------------------------hhheeeE-----eeccCchHHHHHHHhc--ccHHHHHHHHHH
Confidence 2222223 7778888887776543 344455567777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc---------------CcCCcHHHHHHHHHHHHHhhCCCCCcchh
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC---------------SHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (510)
|-..|++.+|..+|.+... |...|+.| +...+.-.|.++|++. |.. .
T Consensus 977 YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~ 1038 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----A 1038 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----h
Confidence 8888888888888776542 22222222 2222333444555544 211 1
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCC----------CC--CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc---------
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMP----------PH--ERDHVVLGALLGACRLHGDVRMADYIGERLIEL--------- 441 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~----------~~--~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------- 441 (510)
...+..|.+.|.+.+|+++--+-. +. ..|+...+.-...+..+.++++|..++-...+.
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~ 1118 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKN 1118 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223456777777777776532211 11 335556666666666667777777665544311
Q ss_pred -------------CCCC---------chhHHHHHHHHHHcCCChHHHHHHHHH
Q 046354 442 -------------QPSS---------SGAYVLSANVHAARGEWDEFAQVRKKM 472 (510)
Q Consensus 442 -------------~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 472 (510)
.|.. ......++..+.++|.+..|.+-|-+.
T Consensus 1119 ~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1119 RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1111 123778899999999999888877654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7e-06 Score=69.95 Aligned_cols=403 Identities=11% Similarity=0.050 Sum_probs=233.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHHH-HHHHHHcCC
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTS-LISGYFKAR 103 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g 103 (510)
+++.+..+.+..++++|++++..-.+..| +....+.|..+|....++..|-..++.+.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 56677778889999999999998888777 666777788888899999999999998844 44433332 345667788
Q ss_pred ChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHHH
Q 046354 104 QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMIT 182 (510)
Q Consensus 104 ~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~ 182 (510)
.+..|+++...|.+. |+...-..-+.+ ...-..+++..+..++++.. +.+..+.+....
T Consensus 93 i~ADALrV~~~~~D~-~~L~~~~lqLqa-------------------AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gC 152 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN-PALHSRVLQLQA-------------------AIKYSEGDLPGSRSLVEQLPSENEADGQINLGC 152 (459)
T ss_pred ccHHHHHHHHHhcCC-HHHHHHHHHHHH-------------------HHhcccccCcchHHHHHhccCCCccchhccchh
Confidence 999999999888763 222211111111 12234567777888888877 566777777777
Q ss_pred HHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhh-HHHHHHHh--hhhhh
Q 046354 183 AYVDAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT-CTSILTSC--EGMLE 255 (510)
Q Consensus 183 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~--~~~~~ 255 (510)
...+.|+.+.|.+-|+...+ .....||..+. +.+.|+++.|++...++.+.|++-.+.. ..+..... ..+.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg- 230 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG- 230 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc-
Confidence 88899999999999998887 34566776554 5578899999999999999886422110 00000000 0000
Q ss_pred hhHHHHHHHHhCCCcchhhhhhhhhhccccc--cccccChhhHHHHhcccCC-----CChhhHHHHHHHHHhcCChhhHH
Q 046354 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWD--WGFQLDVNSARLAFERLEA-----KDVVSWTAMILAYSNHGHGFQVF 328 (510)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 328 (510)
.+-..-...++.++.++. ..+.|+.+.|.+.+-.|+. .|++|...+.-.-+ .+++.+..
T Consensus 231 -------------Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~ 296 (459)
T KOG4340|consen 231 -------------NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGF 296 (459)
T ss_pred -------------chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccH
Confidence 000001112222222111 1577888888888888876 35555544432222 34455555
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC-CCcchhHhHHhHHhh-cCChHHHHHHHhhCC
Q 046354 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK-PRAEHYSCLADILRR-AGQVKEAMRVVSKMP 406 (510)
Q Consensus 329 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 406 (510)
+-+.-+.... +....||..++-.||+..-++.|..++.+-... ... .++..|+ |++++.- .-..++|.+-++.+.
T Consensus 297 ~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 297 EKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 5555555542 233468888888888888888877776543221 111 1233333 3333332 334555555444332
Q ss_pred CCCCcHHHHHHHHHHH-Hhh-CC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 407 PHERDHVVLGALLGAC-RLH-GD---VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 407 ~~~p~~~~~~~l~~~~-~~~-~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.. ....-...+..- .+. ++ ...|++-|+..+++- -......++.|.+..++..+.++|..-.
T Consensus 374 ~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 374 GML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 110 000001111111 111 11 122333333333221 0123445566788888988988887543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-06 Score=73.79 Aligned_cols=305 Identities=12% Similarity=0.025 Sum_probs=162.7
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHH---HHHHHhcCCHHHHHHHHhhCCC--CChhh-HHHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAM---ITAYVDAGNMAQASELFNLMPQ--RNVWT-WNAMIDRY 215 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~ 215 (510)
+..-...+...+...|++..|+.-|...++.|+..|.++ ...|...|+..-|+.=+....+ ||-.. --.-...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 445555667778888999999999999887777666655 4578888888888877777765 55432 22234567
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhh
Q 046354 216 ARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295 (510)
Q Consensus 216 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 295 (510)
.+.|.+++|..=|+..+++.. +..+-.-.-..+.-..+. ......+..+ ...|+...
T Consensus 117 lK~Gele~A~~DF~~vl~~~~--s~~~~~eaqskl~~~~e~----------------~~l~~ql~s~-----~~~GD~~~ 173 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEP--SNGLVLEAQSKLALIQEH----------------WVLVQQLKSA-----SGSGDCQN 173 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCC--CcchhHHHHHHHHhHHHH----------------HHHHHHHHHH-----hcCCchhh
Confidence 899999999999999987543 211111111000000000 0000111111 44555555
Q ss_pred HHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 296 ARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 296 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
|+.....+.+ -+...|..-..+|...|++..|+.=++...+.. ..+..++--+-..+-..|+.+.++...++..
T Consensus 174 ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL-- 250 (504)
T KOG0624|consen 174 AIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL-- 250 (504)
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH--
Confidence 5555555544 233444444555666666666655554444432 2222333333344445555555555555554
Q ss_pred hCCCCCcchh----Hh-------H--HhHHhhcCChHHHHHHHhhCCCCCCcHH-----HHHHHHHHHHhhCCHHHHHHH
Q 046354 373 YGFKPRAEHY----SC-------L--ADILRRAGQVKEAMRVVSKMPPHERDHV-----VLGALLGACRLHGDVRMADYI 434 (510)
Q Consensus 373 ~~~~~~~~~~----~~-------l--~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~A~~~ 434 (510)
.+.|+-..+ .. | +....+.++|.++.+..+...+..|... .+..+-.++...|++.+|++.
T Consensus 251 -KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 251 -KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred -ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 234442211 10 0 1112334555555555555444444311 222333344455666666666
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 435 GERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++++.+|++..++..-+.+|.-...+++|+.-|+...
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=78.88 Aligned_cols=90 Identities=12% Similarity=-0.048 Sum_probs=49.2
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (510)
.+...+...|++++|...|+......| +...|..+..++...|++++|...|+++++++|+++.++..++.++...|++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 344455555555555555555554444 4445555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHH
Q 046354 463 DEFAQVRKKME 473 (510)
Q Consensus 463 ~~A~~~~~~~~ 473 (510)
++|+..|+...
T Consensus 109 ~eAi~~~~~Al 119 (144)
T PRK15359 109 GLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-05 Score=84.68 Aligned_cols=150 Identities=14% Similarity=-0.004 Sum_probs=81.4
Q ss_pred HHhcCChhhHHHHHHhhcc----CChhhHHHHHHHHHcCCChHHHHHHHHhccccCC--C---hhhHHHHHHHHHhcCCc
Q 046354 68 YVKAGRVDEARKVFDEIYE----GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK--N---VVSWTTVVLGCAHNGLI 138 (510)
Q Consensus 68 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~---~~~~~~ll~~~~~~~~~ 138 (510)
....|+++.+...++.+.. .+..........+...|++++|...+.......+ + .....
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~------------ 451 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQ------------ 451 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHH------------
Confidence 3455677777676666521 2222333444455567777777777766543200 0 00000
Q ss_pred chhhHHHHHHHHHHHHhcCchHHHHHHHhhCC----CCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C
Q 046354 139 AKLEVISWTTMCTGLERNAMTKLAREYFVQMP----NKDI----VAWNAMITAYVDAGNMAQASELFNLMPQ-------R 203 (510)
Q Consensus 139 ~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 203 (510)
......+...+...|+++.|...++... ..+. ...+.+...+...|++++|...+.+... +
T Consensus 452 ----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~ 527 (903)
T PRK04841 452 ----AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY 527 (903)
T ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch
Confidence 0111122344556777777777776643 1111 2334455566777888887777766543 1
Q ss_pred C--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 204 N--VWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 204 ~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
. ..++..+...+...|++++|...+++...
T Consensus 528 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 528 HYALWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 23344556667778888888877776644
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.1e-07 Score=75.46 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=100.4
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHH-HHHHHHhcCCh
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNA-MIDRYARNGPE 221 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~~~~ 221 (510)
..+..+.+..+++.|++++..-. +.+....+.+..+|....++..|-..++++-. |...-|.. -..++.+.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 34445566777888888877655 33556778888999999999999999998876 54444432 24567788889
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHH--HHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHH
Q 046354 222 GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA--HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLA 299 (510)
Q Consensus 222 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 299 (510)
..|+++...|.+. |+...-..-+.+.....+.... ..+......+.+..+.+...... .+.|+++.|.+-
T Consensus 95 ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCll-----ykegqyEaAvqk 166 (459)
T KOG4340|consen 95 ADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLL-----YKEGQYEAAVQK 166 (459)
T ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhee-----eccccHHHHHHH
Confidence 9999998888543 2222222222222111111100 00111111122333333333333 555666666666
Q ss_pred hcccCC----CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 046354 300 FERLEA----KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340 (510)
Q Consensus 300 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 340 (510)
|+...+ .....||..+. +.+.|+++.|++...+.+++|++
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 655544 22334444332 33445566666666666666554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00011 Score=73.11 Aligned_cols=238 Identities=11% Similarity=0.115 Sum_probs=157.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhh
Q 046354 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTC 280 (510)
Q Consensus 203 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 280 (510)
.|+..-+.-+.++...+-+.+-.++++++.-.+ +.-+...-+.++-...+. +..++..++.+..--..+.+.+..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~ia-- 1058 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIA-- 1058 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHH--
Confidence 466667777888888888888889988876432 122222223333222111 122222333222211111111111
Q ss_pred hccccccccccChhhHHHHhcccCC-------------------------CChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 046354 281 HYVFWDWGFQLDVNSARLAFERLEA-------------------------KDVVSWTAMILAYSNHGHGFQVFRLFARML 335 (510)
Q Consensus 281 ~~~~~~~~~~~~~~~a~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 335 (510)
...+-+++|..+|++... ..+..|+.+..+-.+.|...+|.+-|-+
T Consensus 1059 -------i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik-- 1129 (1666)
T KOG0985|consen 1059 -------IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK-- 1129 (1666)
T ss_pred -------hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh--
Confidence 223334555555543321 1345799999999999999999887743
Q ss_pred HcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHH
Q 046354 336 KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL 415 (510)
Q Consensus 336 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (510)
..|+..|..++..+.+.|.+++-.+++....+. .-.|... +.|+-+|++.+++.+.++++ ..|+..-.
T Consensus 1130 ----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi-----~gpN~A~i 1197 (1666)
T KOG0985|consen 1130 ----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI-----AGPNVANI 1197 (1666)
T ss_pred ----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh-----cCCCchhH
Confidence 346778999999999999999999999988876 5555544 57899999999999888766 36788878
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 472 (510)
..+..-|...|.++.|.-+|... +-|..|+..+...|++..|...-++.
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888899999999888888753 56777888888888777776544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.7e-08 Score=76.55 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=102.5
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC
Q 046354 329 RLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408 (510)
Q Consensus 329 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (510)
.++++..+ ..|+. +..+...+...|++++|...|+.+... -+.+...+..+..++.+.|++++|...|++....
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555554 34553 445667778899999999999998863 3447888899999999999999999999999877
Q ss_pred CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 409 ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 409 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
.| +...+..+..++...|++++|...|+++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 77 677889999999999999999999999999999999998887777544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.7e-05 Score=70.49 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=49.7
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHHHHHH
Q 046354 23 PDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTSLIS 97 (510)
Q Consensus 23 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~ 97 (510)
-|..+|+.||+-+ +....+++...++++....| ....|..-|..-.+.++++...++|.+.+. -+...|...+.
T Consensus 18 ~di~sw~~lire~-qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREA-QTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHH-ccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 4667777777755 33377777778877777666 455666677777777777777777777643 34555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.5e-06 Score=81.29 Aligned_cols=447 Identities=13% Similarity=0.059 Sum_probs=222.8
Q ss_pred hHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhc
Q 046354 10 VKEATKLFDEMSQPD---PVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIY 85 (510)
Q Consensus 10 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 85 (510)
...|...|-+..+.| ...|..|...|...-+...|...|+...+.+| +......+...|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 444555554444322 34677777777777777888888888887755 55667777788888888888887744433
Q ss_pred cCCh-----hhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchh-------------hHHHH
Q 046354 86 EGNV-----YSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKL-------------EVISW 146 (510)
Q Consensus 86 ~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a-------------~~~~~ 146 (510)
+.+. ..|...--.|...+++..|..-|+...+. +.|...|..+..+|.+.|.+..+ +...-
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 2211 22333334455666777777777766664 33444444444444444444333 11111
Q ss_pred HHHHHHHHhcCchHHHHHHHhhCC----------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCh
Q 046354 147 TTMCTGLERNAMTKLAREYFVQMP----------NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----------RNV 205 (510)
Q Consensus 147 ~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~ 205 (510)
.......+..|.++++...+.... ..-..++-.+...+.-.|-..+|...++...+ .+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 111112223344444444333332 00011111111122222222222222222111 011
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh--hHHHHHH-----HHhCCCcchhhhhhh
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN--MLAHALA-----IRLGFEQETSLTYKC 278 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~l 278 (510)
..|-.+- .|..+|-... .. .|+.+....+.......... ..+.... ...........|..+
T Consensus 714 ~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNL 781 (1238)
T KOG1127|consen 714 LQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNL 781 (1238)
T ss_pred HHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHH
Confidence 1111111 1112222211 00 22322222222211111000 0000000 011111123333333
Q ss_pred hhhccc-cc-ccccc-ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHh
Q 046354 279 TCHYVF-WD-WGFQL-DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD 352 (510)
Q Consensus 279 ~~~~~~-~~-~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 352 (510)
+..|+- .. +...+ +...|...+.+..+ .+...||.|.-. ...|++.-|...|-.-... .+....+|..+.-.
T Consensus 782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 782 GINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVL 859 (1238)
T ss_pred hHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheecccee
Confidence 332210 00 01222 22356777766654 566677776555 5567777777777666554 24555688888888
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCC------CCCcHHHHHHHHHHHHhh
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPP------HERDHVVLGALLGACRLH 425 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~l~~~~~~~ 425 (510)
+....+++.|...|..... +.| +...|-.........|+.-++..+|..-.+ .-|+..-|.+...-....
T Consensus 860 ~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred EEecccHHHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 8889999999999988864 455 444444444444567777777777764211 133444443333334444
Q ss_pred CCHHH----------HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 426 GDVRM----------ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 426 ~~~~~----------A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|+.++ |--.+++.....|+...+|...+...-+.+.+.+|.+...+..
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 54444 3334445557788888889999999999998888888877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.4e-06 Score=76.75 Aligned_cols=186 Identities=15% Similarity=-0.039 Sum_probs=120.7
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCc--hhHHHHHHhcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDE--ITFVGVLSDCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~ 361 (510)
...|++++|...+++..+ .+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|++++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 778899999999988876 3456778888899999999999999998877421 1222 234567778889999999
Q ss_pred HHHHHHHHHHhhCCCCCcchh-H--hHHhHHhhcCChHHHHHH---HhhCCCCCCc---HHHHHHHHHHHHhhCCHHHHH
Q 046354 362 GRKTFNLMSRAYGFKPRAEHY-S--CLADILRRAGQVKEAMRV---VSKMPPHERD---HVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~A~ 432 (510)
|..++++........+..... + .++..+...|..+.+.++ ........|. .........++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 999999986431111111111 1 223333444543333332 1111101111 122224556677889999999
Q ss_pred HHHHHHHhcCCC---------CchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 433 YIGERLIELQPS---------SSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 433 ~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+++.+....-. ........+.++...|++++|.+.+....
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998742211 23335666777899999999999998776
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-07 Score=87.90 Aligned_cols=210 Identities=8% Similarity=-0.064 Sum_probs=161.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccc
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (510)
..+...+...|-...|+.+++++- .|...+.+| .
T Consensus 402 ~~laell~slGitksAl~I~Erle-----------------------------------------mw~~vi~CY-----~ 435 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-----------------------------------------MWDPVILCY-----L 435 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-----------------------------------------HHHHHHHHH-----H
Confidence 445666777777777777777652 344555666 7
Q ss_pred cccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHH
Q 046354 289 FQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 366 (510)
..|+..+|..+..+..+ |+...|..+.+......-+++|.++.+..-.. .-..+.....+.++++++.+.|
T Consensus 436 ~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 436 LLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHL 508 (777)
T ss_pred HhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHH
Confidence 77888888877766554 56677777777766666677777777654321 1112222234478899998888
Q ss_pred HHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+.-.+- .+....+|-.+..+..+.++++.|.+.|.......|+ ...||++-.+|.+.|+-.+|...++++++.+-.+
T Consensus 509 e~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 509 ERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 887753 2346778888888889999999999999999878884 5599999999999999999999999999999888
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 446 SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..+....-+..+.|.|++|.+.+.++.
T Consensus 587 w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred CeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 8889999889999999999999999997
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-05 Score=74.29 Aligned_cols=263 Identities=13% Similarity=0.038 Sum_probs=159.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CC--h-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh-hHHHH
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMPQ---RN--V-WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNET-TCTSI 246 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~--~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l 246 (510)
...|..+...+...|+.+.+.+.+....+ ++ . .........+...|++++|.+.+++..+. .|+.. .+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 34556666667777777776555554432 12 1 22223344567789999999999988764 33332 1111
Q ss_pred HHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C-ChhhHHHHHHHHHhcCC
Q 046354 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-DVVSWTAMILAYSNHGH 323 (510)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~ 323 (510)
... ..... ...+....+.+.+..... + .......+...+...|+
T Consensus 83 ~~~----------------------------~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 83 HLG----------------------------AFGLG-----DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred hHH----------------------------HHHhc-----ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 000 00000 224455556665554332 2 22344556678889999
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc--chhHhHHhHHhhcCChHHHHHH
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA--EHYSCLADILRRAGQVKEAMRV 401 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 401 (510)
+++|...+++..+.. +.+...+..+...+...|++++|..++++........|+. ..|..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999863 4455677888888999999999999999988641112232 2345688899999999999999
Q ss_pred HhhCCCCCCcHHHH----H--HHHHHHHhhCCHHHHHHH---HHHHHhcCCCCchh--HHHHHHHHHHcCCChHHHHHHH
Q 046354 402 VSKMPPHERDHVVL----G--ALLGACRLHGDVRMADYI---GERLIELQPSSSGA--YVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 402 ~~~~~~~~p~~~~~----~--~l~~~~~~~~~~~~A~~~---~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
+++.....|....+ + .++.-+...|....+.+. ........|..... -...+.++...|+.++|.+.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99976443311111 1 223333344543333333 22211111222222 3356677888999999999999
Q ss_pred HHH
Q 046354 471 KME 473 (510)
Q Consensus 471 ~~~ 473 (510)
.+.
T Consensus 289 ~l~ 291 (355)
T cd05804 289 ALK 291 (355)
T ss_pred HHH
Confidence 987
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-05 Score=77.73 Aligned_cols=439 Identities=12% Similarity=0.012 Sum_probs=217.0
Q ss_pred ccCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChh-HHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIV-AESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~ 79 (510)
|.+.++...|+.-|+... +.|...|..+..+|.+.|++..|+++|.++...+|+.. .--...-.-+..|.+.+|..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 567788888888888887 34677888999999999999999999999988777543 22223344567789999998
Q ss_pred HHHhhccC----------ChhhHHHHHHHHHcCCChHHHHHHHHhcccc---------CCChhhHHHHHHHH--------
Q 046354 80 VFDEIYEG----------NVYSWTSLISGYFKARQVDEGRRLFDRMPLK---------LKNVVSWTTVVLGC-------- 132 (510)
Q Consensus 80 ~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~~~ll~~~-------- 132 (510)
.+...... -..++..+...+.-.|-..+|...+++-++. ..+...|..+-.+|
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 88877331 1123333333333333333333333332221 11222222222221
Q ss_pred ---------------HhcCCcchh------------------hHHHHHHHHHHHHh--------cCchHHHHHHHhhCC-
Q 046354 133 ---------------AHNGLIAKL------------------EVISWTTMCTGLER--------NAMTKLAREYFVQMP- 170 (510)
Q Consensus 133 ---------------~~~~~~~~a------------------~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~- 170 (510)
...+..... +...|..+...|.+ ..+...|...+...+
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~ 811 (1238)
T KOG1127|consen 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS 811 (1238)
T ss_pred cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 111111000 22233333322222 111224444444443
Q ss_pred --CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 046354 171 --NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245 (510)
Q Consensus 171 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 245 (510)
..+...|+.|.-. ...|++.-|...|-+... .+..+|..+.-.+..+.+++.|...|...+. +.|+...--.
T Consensus 812 L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~Wl 888 (1238)
T KOG1127|consen 812 LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWL 888 (1238)
T ss_pred HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHH
Confidence 3444555555443 444555555555543322 3456677777777888899999999988865 4554433221
Q ss_pred HH----HHhhhhhhhhHHHHHHH----HhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC------------
Q 046354 246 IL----TSCEGMLENMLAHALAI----RLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA------------ 305 (510)
Q Consensus 246 ll----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~------------ 305 (510)
-. .+.++..+......+.. ..|--+...-+....... ...|+.++-...-+++..
T Consensus 889 G~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h-----~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 889 GEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIH-----LQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHH-----HhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 11 12333444444443321 222223333332222222 445555555444444432
Q ss_pred C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCchhHHHH----HHhcCcCCcHHHHHHHHHHHHHhhCCCCCc
Q 046354 306 K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGV----LSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379 (510)
Q Consensus 306 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (510)
| ...+|.+.....-+.+.++.|.++..+.+.- ..+-+..+|+.+ .+.++..|.++.|..-+..... ..+.
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~----evdE 1039 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM----EVDE 1039 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch----hHHH
Confidence 2 3346666666666677777777766665421 123344455432 2333445555544332221110 0011
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCC---CCcH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPH---ERDH-VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
.+...-+.. .-.|+++++.+.|++.... ..+. .....++......+.-+.|...+-+.+.+.|........+.-+
T Consensus 1040 di~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~ 1118 (1238)
T KOG1127|consen 1040 DIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAV 1118 (1238)
T ss_pred HHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 111111111 1246677777777766533 1121 2333334444455566666666666666665554444444333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.6e-07 Score=74.03 Aligned_cols=155 Identities=14% Similarity=0.076 Sum_probs=100.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc
Q 046354 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392 (510)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (510)
.+-..+...|+-+....+....... .+-|.......+....+.|++..|...+++... .-++|...|+.+.-+|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 3444555566666666655554332 122333344466666677777777777777765 4566777777777777777
Q ss_pred CChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 393 GQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 393 g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
|+++.|..-|.+..+..| ++...+.+...+.-.|+.+.|+.++.......+.++..-..++.+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777777666655 555667777777777777777777777766666666667777777777777777766554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-05 Score=65.73 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=70.2
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc----CcCCcHHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC----SHAGLVEKGR 363 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~g~~~~a~ 363 (510)
+..|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+- .+..|.+.|..++ ...+.+..|.
T Consensus 119 ~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred hcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHH
Confidence 55566666666555522 2222222223344445555566666666542 2334444443333 2233455555
Q ss_pred HHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhc
Q 046354 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG-DVRMADYIGERLIEL 441 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 441 (510)
-+|+++.+ ..+|++.+.+..+.++...|++++|..+++......+ ++.+...++..-...| +.+--.+.....+..
T Consensus 194 yifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 194 YIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 55555554 3455555555555555555555555555555554433 3334444443333333 223334444444444
Q ss_pred CCCC
Q 046354 442 QPSS 445 (510)
Q Consensus 442 ~p~~ 445 (510)
.|.+
T Consensus 272 ~p~h 275 (299)
T KOG3081|consen 272 HPEH 275 (299)
T ss_pred CCcc
Confidence 4444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-07 Score=71.80 Aligned_cols=98 Identities=14% Similarity=-0.012 Sum_probs=86.7
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
....-.+...+...|++++|.++|+-.....| +..-|-.|..++...|++++|+..|..+..++|++|.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34445567777889999999999999886777 67788899999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhh
Q 046354 458 ARGEWDEFAQVRKKMERRV 476 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~~~~~ 476 (510)
..|+.+.|++.|+......
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.1e-06 Score=75.84 Aligned_cols=226 Identities=9% Similarity=-0.006 Sum_probs=155.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccc
Q 046354 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286 (510)
Q Consensus 207 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (510)
++..+-..+...++.++|+.++.++++ +.|+..|.-. .....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~-------------------------------~R~~iL---- 81 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTVWH-------------------------------FRRLCL---- 81 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHH-------------------------------HHHHHH----
Confidence 344445556678889999999999876 4454433211 111111
Q ss_pred ccccc-ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCCh--hhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHH
Q 046354 287 WGFQL-DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHG--FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360 (510)
Q Consensus 287 ~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 360 (510)
...| +++++...++++.+ .+..+|+.-...+.+.|+. ++++.+++.+.+.. +-|...|.....++...|+++
T Consensus 82 -~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 82 -EALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred -HHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 3334 56788888877765 3445676655555556653 67888888888753 456678888888888889999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc---CCh----HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh----CCH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRA---GQV----KEAMRVVSKMPPHER-DHVVLGALLGACRLH----GDV 428 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~----~~~ 428 (510)
++++.++++.+. . +-+...|+....++.+. |.. +++.+...++....| |...|+.+...+... +..
T Consensus 160 eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 160 DELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 999999999875 2 33566666655555443 333 466777767776677 667888888888773 445
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC------------------CChHHHHHHHHHH
Q 046354 429 RMADYIGERLIELQPSSSGAYVLSANVHAARG------------------EWDEFAQVRKKME 473 (510)
Q Consensus 429 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 473 (510)
.+|...+.+....+|+++.+...|+.+|+... ..++|.++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 67999999988889999989999999998743 2366888888774
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-06 Score=71.97 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=112.8
Q ss_pred CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHH
Q 046354 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGA 417 (510)
Q Consensus 339 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 417 (510)
..|+......+-..+...|+-+....+...... ..+.+......++....+.|++..|...+++.....| |...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 345433335666777778888888888777654 3344566777789999999999999999999987754 8889999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..+|.+.|+++.|...|.+++++.|+++.+...++..|.-.|+.+.|..++....
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-06 Score=82.27 Aligned_cols=198 Identities=16% Similarity=0.012 Sum_probs=164.2
Q ss_pred CCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
+.+|-......+...+ .+.|-...|..+|+++ ..|.-.+.+|...|+..+|..+..+..+ -+||+.-|
T Consensus 393 ~lpp~Wq~q~~laell-----~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~ly 460 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELL-----LSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLY 460 (777)
T ss_pred CCCCcchHHHHHHHHH-----HHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhH
Confidence 4566666677777777 8899999999999865 4688889999999999999999988887 48999999
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
..+.+......-+++|.++.+....+ .-..+.....+.++++++.+.++.-.+..| ...+|-.+..+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 99999988888889999988776543 112223333457999999999998887777 777999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccceeEE
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQI 485 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 485 (510)
+++..|.+.|.....++|++...|..+..+|.+.|+..+|...+++..+.. -.|...|.
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWE 591 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWE 591 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeee
Confidence 999999999999999999999999999999999999999999999888544 33333353
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-05 Score=73.06 Aligned_cols=113 Identities=22% Similarity=0.153 Sum_probs=70.0
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADY 433 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~ 433 (510)
..|.++.|+..++.+.+. .+-|+.......+.+.+.|+.++|.+.++++....|+ ...+-.+..++.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 456666666666666652 3344555555666666666666666666666666664 4455556666666666666666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
+++.....+|+++..|..|+.+|...|+..+|....
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 666666666666666666666666665555444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.8e-07 Score=70.83 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=60.4
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
.....++..+...|++++|.+.++......| +...|..+...+...|++++|...++++++.+|.++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 3344555566666666666666666654444 455666666666666677777777776666666666666666667777
Q ss_pred cCCChHHHHHHHHHH
Q 046354 459 RGEWDEFAQVRKKME 473 (510)
Q Consensus 459 ~g~~~~A~~~~~~~~ 473 (510)
.|++++|.+.++...
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 777777776666555
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-06 Score=87.22 Aligned_cols=196 Identities=13% Similarity=0.138 Sum_probs=146.6
Q ss_pred CcchhhhhhhhhhccccccccccChhhHHHHhcccCCC--------ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 046354 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK--------DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK 340 (510)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 340 (510)
|.+...|...+... ...++++.|++++++.... -...|.+++..-..-|.-+...++|++..+. -
T Consensus 1455 PNSSi~WI~YMaf~-----LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--c 1527 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFH-----LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--C 1527 (1710)
T ss_pred CCcchHHHHHHHHH-----hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--c
Confidence 45555666666666 7788888888888877651 2346777777777777777888888888763 1
Q ss_pred CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc---HHHHHH
Q 046354 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD---HVVLGA 417 (510)
Q Consensus 341 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~ 417 (510)
-.-..|..|...|.+.+..++|.++++.|.++++ ....+|..+++.+.+.++-++|..++.++.+.-|. ......
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 2234677778888888888888888888888654 66777888888888888888888888877765553 224444
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+..-.+.||.+++..+|+..+.-.|.....|..++..-.+.|+.+.++.+|+++.
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 55556677888888888888888888888888888888888888888888888877
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-06 Score=85.16 Aligned_cols=132 Identities=16% Similarity=0.050 Sum_probs=76.0
Q ss_pred CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHH
Q 046354 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLG 416 (510)
Q Consensus 339 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 416 (510)
.+.+...+..|.......|..++|..+++.+.+ +.|+ ......++.++.+.+++++|...+++.....|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 344455555555556666666666666666653 2342 334445555666666666666666666555553 33444
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 417 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+..++...|++++|..+|++++..+|+++.++..++.++.+.|+.++|...|+...
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555556666666666666666556666666666666666666666666666553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00033 Score=69.88 Aligned_cols=275 Identities=12% Similarity=0.077 Sum_probs=163.4
Q ss_pred CchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 046354 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236 (510)
Q Consensus 157 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 236 (510)
+..+.|.+.-++..+| .+|+.+..+-.+.|.+.+|.+-|-+. .|+..|..++....+.|.+++-.+++...++..-
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 4555565555554333 46777777777777777777766444 3555677777777777777777777776666655
Q ss_pred CCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHH
Q 046354 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMIL 316 (510)
Q Consensus 237 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 316 (510)
.|...+ .++-++.+..+...+...+ ..|+..-.....+-+ ...|.++.|.-+|. ++.-|..|..
T Consensus 1165 E~~id~--eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrc-----f~~~~y~aAkl~y~-----~vSN~a~La~ 1228 (1666)
T KOG0985|consen 1165 EPYIDS--ELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRC-----FEEKMYEAAKLLYS-----NVSNFAKLAS 1228 (1666)
T ss_pred CccchH--HHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHH-----hhhhhhHHHHHHHH-----HhhhHHHHHH
Confidence 555433 2333333322222221111 123333333344444 56667777776665 4556888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC--CcchhHhHHhHHhhcCC
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP--RAEHYSCLADILRRAGQ 394 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 394 (510)
.+...|+++.|...-++ .-+..||..+-.+|...+.+..|. +. |+.. -..-..-++..|...|.
T Consensus 1229 TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd~~EFrlAQ-----iC---GL~iivhadeLeeli~~Yq~rGy 1294 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVDKEEFRLAQ-----IC---GLNIIVHADELEELIEYYQDRGY 1294 (1666)
T ss_pred HHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhchhhhhHHH-----hc---CceEEEehHhHHHHHHHHHhcCc
Confidence 99999999888765443 235678988888888877665442 21 3332 33344568888899999
Q ss_pred hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-cC-C------CCchhHHHHHHHHHHcCCChHH
Q 046354 395 VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIE-LQ-P------SSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A 465 (510)
+++.+.+++....... ....|..|.-.|.+- .+++-.+-++-... .+ | +....|..+.-+|.+-..|+.|
T Consensus 1295 FeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1295 FEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 9999999988875543 334555565555543 23333333332221 11 1 1233467777777777777776
Q ss_pred H
Q 046354 466 A 466 (510)
Q Consensus 466 ~ 466 (510)
.
T Consensus 1374 a 1374 (1666)
T KOG0985|consen 1374 A 1374 (1666)
T ss_pred H
Confidence 4
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-06 Score=72.96 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=106.1
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH-hhcCC--hHH
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL-RRAGQ--VKE 397 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 397 (510)
.++.+++...++...+.. +.|...|..+...|...|+++.|...+++..+. .+.+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 566778888888877753 667778999999999999999999999999863 344777888888864 67777 599
Q ss_pred HHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 398 AMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 398 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
|.+++++..+..| +...+..+...+...|++++|+..++++++..|.+..-+..+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999998888 667888888999999999999999999999988876554433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0001 Score=78.77 Aligned_cols=358 Identities=11% Similarity=-0.024 Sum_probs=210.0
Q ss_pred ccCCCChHHHHHHHhhcCCCChhh--HHHHHHHHHhcCChhhHHHHHHhcccc--CCChhHHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMSQPDPVS--CASMITVFLRNHDLPKAEALFRAMPES--QRNIVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~A~~ 79 (510)
+...|++.+|.........+.... .......+...|++..+...++.+... ..+..........+...|++++|..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 345677777776666554332111 112223455678888888887776432 1123333344555667899999998
Q ss_pred HHHhhcc----CC------h--hhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHH
Q 046354 80 VFDEIYE----GN------V--YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147 (510)
Q Consensus 80 ~~~~~~~----~~------~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 147 (510)
.++...+ .+ . .....+...+...|++++|...+++.....+....+. ......
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------~~~a~~ 495 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS---------------RIVATS 495 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH---------------HHHHHH
Confidence 8877632 11 1 1222233455679999999999998765322211111 111234
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC-------CCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----Chhh
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP-------NKD--IVAWNAMITAYVDAGNMAQASELFNLMPQ-------R----NVWT 207 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~-------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~ 207 (510)
.+...+...|+++.|...+++.. .+. ..++..+...+...|++++|...+++... + ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 45566777888888888887765 111 23445667788899999999998876543 1 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccc
Q 046354 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRF--MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285 (510)
Q Consensus 208 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (510)
+..+...+...|++++|...+++.....- .+..
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--------------------------------------------- 610 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ--------------------------------------------- 610 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH---------------------------------------------
Confidence 44556667778999999988888754210 0100
Q ss_pred ccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCchhHH-----HHHHhcCcCCcH
Q 046354 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDEITFV-----GVLSDCSHAGLV 359 (510)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~-----~li~~~~~~g~~ 359 (510)
....+..+...+...|++++|...+.+.....-. .....+. ..+..+...|+.
T Consensus 611 ---------------------~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 611 ---------------------QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred ---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 0112333445566677777777777766442100 0111110 111233446778
Q ss_pred HHHHHHHHHHHHhhCCCCCcc----hhHhHHhHHhhcCChHHHHHHHhhCCCC------CC-cHHHHHHHHHHHHhhCCH
Q 046354 360 EKGRKTFNLMSRAYGFKPRAE----HYSCLADILRRAGQVKEAMRVVSKMPPH------ER-DHVVLGALLGACRLHGDV 428 (510)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~l~~~~~~~~~~ 428 (510)
+.|..++...... . ..... ....+..++...|+.++|...+++.... .+ ...+...+..++...|+.
T Consensus 670 ~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 670 EAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred HHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 8888776665431 1 11111 1345667788889998888888776532 11 123555666778888999
Q ss_pred HHHHHHHHHHHhcCCC
Q 046354 429 RMADYIGERLIELQPS 444 (510)
Q Consensus 429 ~~A~~~~~~~~~~~p~ 444 (510)
++|...+.+++++...
T Consensus 748 ~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 748 SEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999866544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.4e-08 Score=54.71 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=18.0
Q ss_pred CCCCCcchhHhHHhHHhhcCChHHHHHHHhhC
Q 046354 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405 (510)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (510)
|+.||..+|++|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-07 Score=53.76 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=28.1
Q ss_pred cCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHH
Q 046354 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369 (510)
Q Consensus 337 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 369 (510)
.|+.||..||+.+|.++++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 378888888888888888888888888888877
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.8e-06 Score=72.18 Aligned_cols=177 Identities=13% Similarity=0.037 Sum_probs=122.4
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHhccccCCCh----hHHHHHHHHHHhcCChhhHHHHHHhhcc--CChh----hH
Q 046354 23 PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNI----VAESAMIDGYVKAGRVDEARKVFDEIYE--GNVY----SW 92 (510)
Q Consensus 23 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~----~~ 92 (510)
.....+..+...+.+.|++++|...|+++....|+. ..+..+..++...|++++|...++.+.+ |+.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 356677888888999999999999999998877753 4667788899999999999999999955 3222 34
Q ss_pred HHHHHHHHcC--------CChHHHHHHHHhccccCCChh-hHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHH
Q 046354 93 TSLISGYFKA--------RQVDEGRRLFDRMPLKLKNVV-SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR 163 (510)
Q Consensus 93 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~ 163 (510)
..+..++... |+.+.|.+.|+.+.+..|+.. .+..+..... ... .
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~------------------~~~-------~- 164 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY------------------LRN-------R- 164 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH------------------HHH-------H-
Confidence 5555555544 788999999999988756543 2222211100 000 0
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RN----VWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
. ......+...|.+.|++++|...++...+ |+ ...+..+..++.+.|++++|..+++.+...
T Consensus 165 --~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 --L-------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --H-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0 00112455667788888888888877654 32 356778888888888888888888877653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-05 Score=80.33 Aligned_cols=174 Identities=15% Similarity=0.122 Sum_probs=126.9
Q ss_pred cChhhHHHHhcccCC-C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHH
Q 046354 291 LDVNSARLAFERLEA-K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNL 368 (510)
Q Consensus 291 ~~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 368 (510)
|.-+...++|++..+ . ....|..|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+.++.+.|..++.+
T Consensus 1511 G~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444444544444 1 2346778888999999999999999999885 455667888899999999999999999999
Q ss_pred HHHhhCCCCC---cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--C
Q 046354 369 MSRAYGFKPR---AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIEL--Q 442 (510)
Q Consensus 369 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~ 442 (510)
+.+. -|. .....-.+..-.+.|+.+.+..+|+......| ....|+.++..-.++|+.+.+..+|++++.+ .
T Consensus 1590 AL~~---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1590 ALKS---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHhh---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8864 343 33445556666789999999999998886666 6679999999999999999999999999854 4
Q ss_pred CCCchh-HHHHHHHHHHcCCChHHHHH
Q 046354 443 PSSSGA-YVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 443 p~~~~~-~~~l~~~~~~~g~~~~A~~~ 468 (510)
|..... |..+...-..-|+-+.+..+
T Consensus 1667 ~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 555444 34444444444554444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-06 Score=68.38 Aligned_cols=182 Identities=12% Similarity=0.050 Sum_probs=139.5
Q ss_pred ccccChhhHHHHhcccCC--------CCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCC
Q 046354 288 GFQLDVNSARLAFERLEA--------KDV-VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAG 357 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g 357 (510)
....+.++..+++..+.. ++. ..|..++-+....|+.+-|..+++.+... + |.+. .-..-..-+...|
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhh
Confidence 667788888888887754 222 24566677778889999999999999886 4 4443 2222223345678
Q ss_pred cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHH
Q 046354 358 LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGE 436 (510)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 436 (510)
++++|.++++.+..+ -+.|..++..=+-+.-..|+--+|++-+.+..+. ..|...|.-+...|...|++++|.-.++
T Consensus 101 ~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 999999999999985 2446666766666666778877888777666544 4589999999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHcCC---ChHHHHHHHHHH
Q 046354 437 RLIELQPSSSGAYVLSANVHAARGE---WDEFAQVRKKME 473 (510)
Q Consensus 437 ~~~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 473 (510)
+++=.+|-++..+..++.++...|. .+-|+++|.+..
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999877774 555777777555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-05 Score=80.16 Aligned_cols=215 Identities=11% Similarity=0.068 Sum_probs=127.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RNV-WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
+.+...+..|+..+...|++++|.++.+...+ |+. ..|-.+...+.+.++.+.+..+ .+.. ..+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~-------- 95 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQ-------- 95 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hccc--------
Confidence 34556677778877788888888887775554 332 3344444466667776666555 2222 1111
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChh
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGF 325 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 325 (510)
..++.....+...+.. .+..++..+..+|-+.|+.+
T Consensus 96 ------------------------------------------~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ 133 (906)
T PRK14720 96 ------------------------------------------NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENK 133 (906)
T ss_pred ------------------------------------------ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChH
Confidence 1112111111222221 12234555666666777777
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhC
Q 046354 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405 (510)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (510)
+|..+|+++.+.. +-|....+.+...++.. +.++|.+++.++... +...+++..+.+++.++
T Consensus 134 ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 134 KLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHH
Confidence 7777777777654 44455666666666666 677777666666543 22333444444444444
Q ss_pred CCCCCc---------------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 406 PPHERD---------------------HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 406 ~~~~p~---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
....|+ ..++.-+-..|...++++++..+++.+++.+|.+..+...++.+|.
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 333332 2334444466777889999999999999999999888888888876
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00076 Score=61.47 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=86.0
Q ss_pred ccCCCChHHHHHHHhhcCC---CChh------hHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHH--HhcC
Q 046354 4 FGCTGKVKEATKLFDEMSQ---PDPV------SCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGY--VKAG 72 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~---~~~~------~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~--~~~~ 72 (510)
+.+++++.+|.++|.++-+ .++. .-+.++++|. .++.+.....+....+..| ...|-.|..++ .+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 4578899999999999862 2222 2345666664 4556666666666666656 34444454433 4778
Q ss_pred ChhhHHHHHHhhcc------------------CChhhHHHHHHHHHcCCChHHHHHHHHhcccc--C----CChhhHHHH
Q 046354 73 RVDEARKVFDEIYE------------------GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK--L----KNVVSWTTV 128 (510)
Q Consensus 73 ~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~----~~~~~~~~l 128 (510)
++++|.+.+....+ +|...-+..+..++..|.+.+++.+++++... + =+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 89999988877632 12233466778889999999999999999876 2 367777774
Q ss_pred HHHHH
Q 046354 129 VLGCA 133 (510)
Q Consensus 129 l~~~~ 133 (510)
+-.+.
T Consensus 174 vlmls 178 (549)
T PF07079_consen 174 VLMLS 178 (549)
T ss_pred HHHHh
Confidence 44443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-05 Score=73.12 Aligned_cols=252 Identities=17% Similarity=0.135 Sum_probs=165.8
Q ss_pred HHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHH
Q 046354 152 GLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~ 225 (510)
-+.+.|++.+|.-.|+..+ +.+...|..|.......++-..|+..+++..+ .|....-.|.-.|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 3456677777777777766 33455677777777777777777777777665 34556666666777777777777
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC
Q 046354 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305 (510)
Q Consensus 226 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 305 (510)
+.++.......+- ..+..+ ...++...- +..
T Consensus 374 ~~L~~Wi~~~p~y-----~~l~~a--------------------------------------~~~~~~~~~----~s~-- 404 (579)
T KOG1125|consen 374 KMLDKWIRNKPKY-----VHLVSA--------------------------------------GENEDFENT----KSF-- 404 (579)
T ss_pred HHHHHHHHhCccc-----hhcccc--------------------------------------CccccccCC----cCC--
Confidence 7777765432110 000000 001110000 000
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHH-HHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhH
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARM-LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYS 383 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 383 (510)
.+. ..+....++|-++ ...+..+|+.....|.-.|--.|++++|...|+.+.. ++| |..+||
T Consensus 405 ~~~-------------~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWN 468 (579)
T KOG1125|consen 405 LDS-------------SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWN 468 (579)
T ss_pred CCH-------------HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHH
Confidence 011 1122333444444 3445456777777777778889999999999999986 356 778899
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC----------chhHHHH
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSS----------SGAYVLS 452 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----------~~~~~~l 452 (510)
.|.-.++...+.++|+..|.+..++.|+ +.++..|.-+|...|.+++|...|=.++.+.+.+ ...|.+|
T Consensus 469 RLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tL 548 (579)
T KOG1125|consen 469 RLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTL 548 (579)
T ss_pred HhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHH
Confidence 9999999999999999999999988896 4488888999999999999999999998665541 1346666
Q ss_pred HHHHHHcCCChHHHHH
Q 046354 453 ANVHAARGEWDEFAQV 468 (510)
Q Consensus 453 ~~~~~~~g~~~~A~~~ 468 (510)
=.++.-.++.|-+.++
T Consensus 549 R~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 549 RLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHcCCchHHHHh
Confidence 6666666766644443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.2e-05 Score=76.28 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLM 231 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m 231 (510)
..+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|.+++.+.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 3455566666666666666666666554 3455566666666666 666666666555
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.8e-05 Score=63.58 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=125.2
Q ss_pred ccccChhhHHHHhcccCC--CChh-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA--KDVV-SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|+.+.|..+++.+.. |++. .-..-...+-..|++++|+++++.+.+.+ +-|..++.-=+...-..|+.-+|++
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 778899999999988776 3322 11111223455799999999999999875 5566677665655666777778999
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh---CCHHHHHHHHHHHHh
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH---GDVRMADYIGERLIE 440 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 440 (510)
-+....+ .+..|...|.-+.+.|...|+++.|.-.++++.=..| ++..+..+...+.-. .+.+.|.+.|.+.++
T Consensus 142 ~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 142 ELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8888888 5788999999999999999999999999999875677 666777777765444 477889999999999
Q ss_pred cCCCCchhHHHH
Q 046354 441 LQPSSSGAYVLS 452 (510)
Q Consensus 441 ~~p~~~~~~~~l 452 (510)
+.|.+...+..+
T Consensus 220 l~~~~~ral~GI 231 (289)
T KOG3060|consen 220 LNPKNLRALFGI 231 (289)
T ss_pred hChHhHHHHHHH
Confidence 999665554444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-06 Score=77.51 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=99.7
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
..++..+...++++.|..+++++.+. .| .....++..+...++-.+|.+++.+.....| +...+......+...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DP--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CC--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34556666778888899999888765 24 4555678888888888888888888876666 556666667778889
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++++.|..+.+++.+..|++..+|..|+.+|...|++++|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999988776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00015 Score=61.25 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=63.5
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH-HH
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE-AM 399 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~ 399 (510)
.++..+|.-+|++|-+. .+|+..+.+....++...|++++|..+++....+ -..++.+...++-.-...|...+ ..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 45678888888888764 6888888888888888888999999988888874 34456666666665555665544 34
Q ss_pred HHHhhCCCCCCcHH
Q 046354 400 RVVSKMPPHERDHV 413 (510)
Q Consensus 400 ~~~~~~~~~~p~~~ 413 (510)
+.+.+.....|...
T Consensus 263 r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 263 RNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhcCCcch
Confidence 55566654455444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0014 Score=61.07 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=78.9
Q ss_pred CCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhc-CChhhHH---
Q 046354 6 CTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKA-GRVDEAR--- 78 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~A~--- 78 (510)
+...++++.+.++++. +-.+..|..-|+...+..+++....+|.+-....-+...|...++.-.+. |+...++
T Consensus 31 qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 31 QTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred ccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 4457899999999997 34678899999999999999999999999888767888888877765543 3333332
Q ss_pred -HHHHhhcc------CChhhHHHHHHHHHc---CC------ChHHHHHHHHhcccc
Q 046354 79 -KVFDEIYE------GNVYSWTSLISGYFK---AR------QVDEGRRLFDRMPLK 118 (510)
Q Consensus 79 -~~~~~~~~------~~~~~~~~li~~~~~---~g------~~~~A~~~~~~m~~~ 118 (510)
+.|+-..+ .+...|+..+..+-. .| +++...++|+++...
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 22333222 233457766665543 34 445677888888765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.3e-06 Score=65.67 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=90.3
Q ss_pred HHHHHHHcCCCCCc-hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC
Q 046354 330 LFARMLKSGTKPDE-ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH 408 (510)
Q Consensus 330 ~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (510)
.+++... ..|+. .....+...+...|++++|...++.+... .+.++..+..+...+.+.|++++|...++...+.
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455554 34443 34556667777889999999999988763 3457788888899999999999999999888766
Q ss_pred CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 409 ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 409 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.| +...+..+...+...|++++|...++++++.+|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 66 56778888888999999999999999999999988654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00012 Score=66.36 Aligned_cols=228 Identities=10% Similarity=0.006 Sum_probs=139.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhh
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNG-PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 253 (510)
..+-..+...++.++|+.+.+++.+ | +..+|+....++...| ++++++..++++.+...+.-. ++.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq-aW~--------- 110 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ-IWH--------- 110 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH-HhH---------
Confidence 3334445566777778777777765 2 3344555555556666 567888887777664322111 111
Q ss_pred hhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccC--hhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHH
Q 046354 254 LENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD--VNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVF 328 (510)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 328 (510)
.....+ .+.|+ .+++..+++++.+ .|..+|+...-++...|++++++
T Consensus 111 -----------------------~R~~~l-----~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 111 -----------------------HRRWLA-----EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred -----------------------HHHHHH-----HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHH
Confidence 111111 12222 2344555555544 46678888888888889999999
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHhcCcC---Cc----HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc----CChHH
Q 046354 329 RLFARMLKSGTKPDEITFVGVLSDCSHA---GL----VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA----GQVKE 397 (510)
Q Consensus 329 ~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 397 (510)
+.++++++.+ +-|...|+.....+.+. |. .+....+...+... .+-+...|+.+...+... ++..+
T Consensus 163 ~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 163 EYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchh
Confidence 9999999875 34455665554444333 22 24667777666653 344778888887777763 44567
Q ss_pred HHHHHhhCCCCCC-cHHHHHHHHHHHHhhC------------------CHHHHHHHHHHHHhcCCCCc
Q 046354 398 AMRVVSKMPPHER-DHVVLGALLGACRLHG------------------DVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 398 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~------------------~~~~A~~~~~~~~~~~p~~~ 446 (510)
|.+++.+.....| +......|+..|.... ..++|.++++.+.+.+|-..
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~ 307 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRR 307 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHH
Confidence 8888888765555 6667888888887532 23567777777755555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0013 Score=59.85 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=108.8
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHh
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (510)
.-..+|...+..-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+...|..+|+.-... ++.++..-+-
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHH
Confidence 345678888888888888999999999999988 6778888888887665 57889999999988764 3334444456
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCC-CCc--HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPH-ERD--HVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~-~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.+..+.+.++-+.|..+|+...+. ..+ ...|..+|..-...|+...+..+=+++.+.-|..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 777788899999999999966532 222 5588889998889999999999999998888875
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=80.00 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=120.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
++..+-.|.....+.|.+++|..+|+...+ +.|+.. ....+...+.+.+.+++|....++.... -+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 477888899999999999999999999998 467665 6677788899999999999999999873 34467777889
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
..++.+.|++++|..+|++.....|+ ..++..+...+...|+.++|...|+++++...+....|..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999999866664 6799999999999999999999999999777666555443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.8e-06 Score=63.05 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=55.8
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHH
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGACRLHGDVRMADYIGERLIELQPSS---SGAYVLSA 453 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 453 (510)
++..++..+.+.|++++|.+.+..+....|+ ...+..+...+...|+++.|...++.+....|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555556666666666666665543332 2344455666666666666666666666666554 23456666
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 046354 454 NVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.++...|++++|.+.++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 666666666666666666653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00016 Score=66.40 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=90.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCchhH-HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCC
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITF-VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQ 394 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 394 (510)
.+...|++++|+..++.++.. .|+...| ......+...++.++|.+.++++... .|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCC
Confidence 344668888999999888875 4555544 44456677888999999999888864 554 5566678888899999
Q ss_pred hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 395 VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+.+|+.+++......| |+..|..|..+|...|+..++....-+..
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999998888876666 77788999999999998888877766554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.7e-07 Score=64.66 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=59.3
Q ss_pred cCChHHHHHHHhhCCCCCC---cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHH
Q 046354 392 AGQVKEAMRVVSKMPPHER---DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
.|+++.|+.+++++.+..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4677888888877776555 344556678888888888888888888 667777767777778888888888888888
Q ss_pred HHH
Q 046354 469 RKK 471 (510)
Q Consensus 469 ~~~ 471 (510)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-05 Score=63.28 Aligned_cols=115 Identities=20% Similarity=0.126 Sum_probs=62.1
Q ss_pred CCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH----HHHHHHHHHHhhCCHHH
Q 046354 356 AGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV----VLGALLGACRLHGDVRM 430 (510)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~ 430 (510)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+......|+.. ....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555566666666655411110 112223344555666666666666666654443322 33345555666677777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 431 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
|...++.. ...+-.+..+...+.+|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77776552 22222334466666777777777777776654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-06 Score=49.47 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (510)
.+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=59.11 Aligned_cols=92 Identities=20% Similarity=0.149 Sum_probs=78.6
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
+..++..+...|++++|...+++..+..| +...+..+...+...|++++|...+++.....|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45667778889999999999998876655 44677778888888999999999999999999998888999999999999
Q ss_pred CChHHHHHHHHHH
Q 046354 461 EWDEFAQVRKKME 473 (510)
Q Consensus 461 ~~~~A~~~~~~~~ 473 (510)
++++|...++...
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999988665
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-06 Score=48.45 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNE 240 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 240 (510)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-06 Score=48.03 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP 341 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 341 (510)
.+|++++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888877
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.7e-06 Score=56.06 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=40.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+...+...|++++|...|+++++..|+++..+..++.++...|++++|..+|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777777777777777777777776653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.4e-05 Score=59.14 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc---hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc----chh
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE---ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA----EHY 382 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~ 382 (510)
.|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+.+... . |++ ...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-A--PDPELKPLAR 88 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--CCHHHHHHHH
Confidence 355555555 4788999999999998853 3331 23333456778899999999999999986 4 433 234
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 438 (510)
..|...+...|++++|...++...........+......+...|++++|...|+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55788889999999999999887644446667777888899999999999999875
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-06 Score=47.43 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 238 (510)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999987
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=67.66 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=87.0
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRM 430 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 430 (510)
+.+.+++.+|+..|.++++ +.| |+..|..=..+|.+.|.++.|++-.+......| -..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4567888899998888885 455 666667778888999999999988888887777 45588999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 431 ADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 431 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
|++.|+++++++|++......|-.+-.+.+..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999998877777777766666555
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.8e-06 Score=70.11 Aligned_cols=87 Identities=20% Similarity=0.126 Sum_probs=79.0
Q ss_pred hHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHH
Q 046354 387 DILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (510)
.-+.+.+++++|+..|.+.++..| |.+.|..-..+|.+.|.++.|++-.+.++.++|..+.+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345678999999999999998888 6677777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 046354 466 AQVRKKME 473 (510)
Q Consensus 466 ~~~~~~~~ 473 (510)
++.|++..
T Consensus 169 ~~aykKaL 176 (304)
T KOG0553|consen 169 IEAYKKAL 176 (304)
T ss_pred HHHHHhhh
Confidence 99988544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=73.84 Aligned_cols=108 Identities=15% Similarity=-0.007 Sum_probs=90.7
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV 428 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 428 (510)
...+...|+++.|+..|+++.+. .+.+...|..+..+|.+.|++++|+..++++....| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44556789999999999999874 344677888889999999999999999999987777 566888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 046354 429 RMADYIGERLIELQPSSSGAYVLSANVHAAR 459 (510)
Q Consensus 429 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (510)
++|...|+++++++|+++.....+..+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988777665554433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=54.54 Aligned_cols=63 Identities=22% Similarity=0.126 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC-CChHHHHHHHHHH
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG-EWDEFAQVRKKME 473 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 473 (510)
+..+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|++.+++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999 7999999998665
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.9e-05 Score=59.08 Aligned_cols=105 Identities=16% Similarity=0.098 Sum_probs=70.9
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALL 419 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 419 (510)
++..+...+...|++++|.+.++.+.+.+.-.+ ....+..+..++.+.|++++|...++.+....|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566667777777777777765411111 1334556777777888888888888777654443 34566777
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 778888888888888888888888875443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.7e-05 Score=66.48 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHh-cCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD-CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888889999999999999998543 3344455444433 34467888899999999985 5667888999999
Q ss_pred HHhhcCChHHHHHHHhhCCCCCCcHH----HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHERDHV----VLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
.+.+.|+.+.|..+|++....-|... .|...+..-.+.|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999887655444 999999999999999999999999999888853
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.06 E-value=1e-05 Score=54.40 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=54.1
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
+...+.+.|++++|.+.|+++.+..| +...+..+...+...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46678899999999999999998888 666888999999999999999999999999999874
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.5e-05 Score=69.83 Aligned_cols=104 Identities=8% Similarity=-0.043 Sum_probs=83.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (510)
-...+...|++++|+..|++.++.. +-+...|..+..++...|++++|+..++.+.+. .+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3456677899999999999999853 445567778888889999999999999999864 2336777888899999999
Q ss_pred ChHHHHHHHhhCCCCCCcHHHHHHHHH
Q 046354 394 QVKEAMRVVSKMPPHERDHVVLGALLG 420 (510)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~l~~ 420 (510)
++++|...|++..+..|+.......+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999878886655544443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.8e-05 Score=68.41 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=94.8
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 367 (510)
...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+. .+-+...+..-...+.+.++++.|+.+.+
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66788999999999999877777778888888888889999999988864 24454555555666788899999999999
Q ss_pred HHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCC
Q 046354 368 LMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPP 407 (510)
Q Consensus 368 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (510)
++... .| +..+|..|+.+|.+.|+++.|+..+..++-
T Consensus 259 ~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 259 KAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99863 55 567899999999999999999999988873
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0078 Score=54.63 Aligned_cols=104 Identities=17% Similarity=0.098 Sum_probs=55.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (510)
+.-+...|+...|.++-++.. -|+..-|...+.+++..+++++-.++... +-+|.-|..++++|.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCC
Confidence 444455565555555544331 25555666666666666666655443211 1234555666666666666
Q ss_pred hHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 046354 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
..+|..++.++. +..-+..|.+.|++.+|.+..-+
T Consensus 253 ~~eA~~yI~k~~--------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKIP--------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhCC--------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666643 12234455666666666555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=63.71 Aligned_cols=109 Identities=17% Similarity=0.086 Sum_probs=91.1
Q ss_pred CCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh---CCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 375 FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH---GDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
.+-|...|-.|...|...|+++.|...|.+..+..| ++..+..+..++..+ ....++..++++++.++|.++.+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 355899999999999999999999999999887755 677777777775543 3568899999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHH-Hhhcccccee
Q 046354 451 LSANVHAARGEWDEFAQVRKKME-RRVKKVASFS 483 (510)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~p~~~ 483 (510)
.|+..+...|++.+|...++.|. ......|..+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999998 4444455443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.032 Score=55.75 Aligned_cols=424 Identities=13% Similarity=0.127 Sum_probs=222.9
Q ss_pred CCCChHHHHHHHhhcC--CCChhhHHHHHHHH--HhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHH
Q 046354 6 CTGKVKEATKLFDEMS--QPDPVSCASMITVF--LRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKV 80 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~ 80 (510)
.++++..|+....... .|| ..|..++.++ .|.|+.++|..+++......+ |..+...+-..|.+.+..++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4677888888888776 344 3445555554 589999999988888776544 677888888999999999999999
Q ss_pred HHhhcc--CChhhHHHHHHHHHcCCChHH----HHHHHHhccccCCChhhHHHHHHHHHhc-CCcchhhHHHHHHHHHHH
Q 046354 81 FDEIYE--GNVYSWTSLISGYFKARQVDE----GRRLFDRMPLKLKNVVSWTTVVLGCAHN-GLIAKLEVISWTTMCTGL 153 (510)
Q Consensus 81 ~~~~~~--~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~l~~~~ 153 (510)
+++..+ |+......+..+|+|.+.+.+ |.++++... .+...+=+++...... ...+.+-. .+.
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p---k~~yyfWsV~Slilqs~~~~~~~~~----~i~--- 169 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP---KRAYYFWSVISLILQSIFSENELLD----PIL--- 169 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---cccchHHHHHHHHHHhccCCccccc----chh---
Confidence 999966 555555566677788777654 455554332 3344444444443222 11111111 011
Q ss_pred HhcCchHHHHHHHhhCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhh-----CCCCChhhHHHHHHHHHhcCChHH
Q 046354 154 ERNAMTKLAREYFVQMPNKD-----IVAWNAMITAYVDAGNMAQASELFNL-----MPQRNVWTWNAMIDRYARNGPEGA 223 (510)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~ 223 (510)
.-.|.+.++.+...+ ..-.......+...|++++|+.++.. ....+...-+.-+..+...+++.+
T Consensus 170 -----l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 170 -----LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred -----HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 122344444444211 11122234456778999999998832 222344455566778888999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhccc
Q 046354 224 AMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERL 303 (510)
Q Consensus 224 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 303 (510)
..++-.++...|. |. |...+....+. + .....+...... ...+..+...+...+.
T Consensus 245 l~~l~~~Ll~k~~--Dd--y~~~~~sv~kl---------L-e~~~~~~a~~~~-----------s~~~~l~~~~ek~~~~ 299 (932)
T KOG2053|consen 245 LFELSSRLLEKGN--DD--YKIYTDSVFKL---------L-ELLNKEPAEAAH-----------SLSKSLDECIEKAQKN 299 (932)
T ss_pred HHHHHHHHHHhCC--cc--hHHHHHHHHHH---------H-Hhcccccchhhh-----------hhhhhHHHHHHHHHHh
Confidence 9999988888663 32 33333221111 0 111011111100 2222333333333322
Q ss_pred CCC-ChhhHHHHHHHHH---hcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc
Q 046354 304 EAK-DVVSWTAMILAYS---NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379 (510)
Q Consensus 304 ~~~-~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (510)
... .-.+|-+=+.++. .-|+.++....|-+ +-|-.| .|..=+..|...=..+....++...... .++.
T Consensus 300 i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~ 371 (932)
T KOG2053|consen 300 IGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDS 371 (932)
T ss_pred hcccccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcc
Confidence 221 1112222233322 34666665544422 223222 1112222222222223333333333211 1111
Q ss_pred c-------hhHhHHhHHhhcCCh-----HHHHHHH-------hhCCC----CCCc---------HHHHHHHHHHHHhhCC
Q 046354 380 E-------HYSCLADILRRAGQV-----KEAMRVV-------SKMPP----HERD---------HVVLGALLGACRLHGD 427 (510)
Q Consensus 380 ~-------~~~~l~~~~~~~g~~-----~~A~~~~-------~~~~~----~~p~---------~~~~~~l~~~~~~~~~ 427 (510)
. -+.+.+..-.-.|.+ +....++ +.-.+ ..|. ..+.+.|+..+.+.++
T Consensus 372 s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd 451 (932)
T KOG2053|consen 372 SGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTND 451 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 1 011111111112211 1111111 11111 1221 1134667777877665
Q ss_pred ---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH-Hhhcc
Q 046354 428 ---VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVKK 478 (510)
Q Consensus 428 ---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 478 (510)
+-+|+-+++..+...|.+..+-..++.+|.-.|-+..|...|+.+. +.|+.
T Consensus 452 ~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 452 LTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 4568888888888899998888889999999999999999999887 66654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.3e-05 Score=54.46 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=40.4
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
...|++++|...|++++...|+++.....++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888888888888876663
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=9e-05 Score=58.36 Aligned_cols=90 Identities=11% Similarity=0.020 Sum_probs=78.4
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
...-+-..|++++|..+|+-+.-..| +..-|..|..++...+++++|...|..+..+++++|.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 44445678999999999998765566 67778888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 046354 464 EFAQVRKKMER 474 (510)
Q Consensus 464 ~A~~~~~~~~~ 474 (510)
.|+..|+....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999987763
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.3e-05 Score=60.96 Aligned_cols=95 Identities=16% Similarity=-0.009 Sum_probs=76.9
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
...+..++..+...|++++|...+++.....|+ ..++..+...+...|++++|...+++++...|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566777778889999999999888654333 3478888899999999999999999999999998888888888
Q ss_pred HHH-------HcCCChHHHHHHHHHH
Q 046354 455 VHA-------ARGEWDEFAQVRKKME 473 (510)
Q Consensus 455 ~~~-------~~g~~~~A~~~~~~~~ 473 (510)
++. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887777766544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=60.89 Aligned_cols=83 Identities=22% Similarity=0.117 Sum_probs=65.3
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
...+..+...+...|++++|...|++..+..|+ ...+..+...+...|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566777777888888888888877644332 3577788888888999999999999999999988888888888
Q ss_pred HHHHcCC
Q 046354 455 VHAARGE 461 (510)
Q Consensus 455 ~~~~~g~ 461 (510)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00022 Score=58.97 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD--EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+...|++++|...+++..+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34566666666777777777777777665432221 235555556666666666666666666643 12233444445
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (510)
..++...|+...+..-++... ..+++|.+.++++++.+|++ +..++..+...|+.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 555555555444332222111 22677888888888888877 55566666666543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00049 Score=66.95 Aligned_cols=68 Identities=24% Similarity=0.221 Sum_probs=38.5
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
+..+..+.-.....|++++|...++++.+..|+...|..+...+...|+.++|...|+++..++|.++
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 34444444444445566666666665555555555555555555556666666666666666666554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.4e-05 Score=43.38 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 339 (510)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=53.56 Aligned_cols=91 Identities=19% Similarity=0.092 Sum_probs=49.2
Q ss_pred HhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHH
Q 046354 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 429 (510)
..+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++......| +..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3344445555555555555432 122223444555555556666666666665544433 3345556666666666777
Q ss_pred HHHHHHHHHHhcCC
Q 046354 430 MADYIGERLIELQP 443 (510)
Q Consensus 430 ~A~~~~~~~~~~~p 443 (510)
.|...+++..+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 77777666665554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00015 Score=63.65 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=51.6
Q ss_pred hhcCChHHHHHHHhhCCCCCCcH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHHcCCC
Q 046354 390 RRAGQVKEAMRVVSKMPPHERDH----VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA---YVLSANVHAARGEW 462 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~ 462 (510)
.+.|++++|...|+.+.+..|+. ..+..+...|...|++++|...|+.+++..|+++.. +..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 44566666666666665444432 345556666666667777777777666666654333 44456666666677
Q ss_pred hHHHHHHHHHHHh
Q 046354 463 DEFAQVRKKMERR 475 (510)
Q Consensus 463 ~~A~~~~~~~~~~ 475 (510)
++|.++|+.+.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666655533
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.1e-05 Score=42.88 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 236 (510)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788899999999999999999999888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00063 Score=61.29 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=51.6
Q ss_pred HHHHHhc-CchHHHHHHHhhCC-----CCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----Ch-hhHH
Q 046354 150 CTGLERN-AMTKLAREYFVQMP-----NKD----IVAWNAMITAYVDAGNMAQASELFNLMPQ-----R----NV-WTWN 209 (510)
Q Consensus 150 ~~~~~~~-~~~~~a~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~-~~~~ 209 (510)
...|... |+++.|.+.|++.. ..+ ...+..+...+.+.|++++|.++|+++.. + +. ..|-
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3445555 56666666665554 111 23456677889999999999999987542 1 11 1233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
..+-++...||+..|.+.+++....
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344667789999999999998654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.9e-05 Score=53.69 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=27.0
Q ss_pred cCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 046354 392 AGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 447 (510)
.|++++|.+.|+++....| +...+..+..+|.+.|++++|..+++++....|+++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 4455555555555443344 3344444555555555555555555555555555433
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.4e-05 Score=51.05 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=37.6
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|.+.+++++|.+++++++..+|+++..+...+.++...|++++|.+.++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345666777777777777777777777777777777777777777777776655
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.6e-05 Score=52.48 Aligned_cols=66 Identities=24% Similarity=0.165 Sum_probs=57.5
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCC
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG-DVRMADYIGERLIELQP 443 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 443 (510)
++..|..+...+...|++++|+..|++..+..| +...|..+..++...| ++++|.+.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677888899999999999999999887777 5668888899999999 79999999999999887
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0031 Score=50.36 Aligned_cols=133 Identities=13% Similarity=0.020 Sum_probs=100.6
Q ss_pred CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC---cHHHH
Q 046354 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER---DHVVL 415 (510)
Q Consensus 339 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~ 415 (510)
..|+...-..|..+....|+..+|...|++...- -+..|+.+...+.++....+++.+|...++++-+-.| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677776777788888889999999999888774 4556788888888888888999998888887765433 23344
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
-.+...+...|.+++|+..|+.++...|+. ..-...+..+.++|+.++|..-+-.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 456777888899999999999998888874 566666677888888777765554444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.034 Score=53.94 Aligned_cols=198 Identities=12% Similarity=0.014 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH--------------
Q 046354 144 ISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWN-------------- 209 (510)
Q Consensus 144 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------- 209 (510)
...-.+.+++.+.|.-++|.+.+-+...|. +.+..|...++|.+|.++-+...-|.+.+.-
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~ 927 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM 927 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH
Confidence 344456666666777777766665544332 3456677888888888888776655444321
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHhhHHHHHHHhh--hhhhhhHHHHHHHHhCCCcchhhhhhhhhhcc
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQ----SRFMPNETTCTSILTSCE--GMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (510)
.-|..+.+.|++-.|-+++.+|.+ .+.+|-..--..++.++. +......-....
T Consensus 928 eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~-------------------- 987 (1189)
T KOG2041|consen 928 EAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKI-------------------- 987 (1189)
T ss_pred HHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------------
Confidence 123445566666666677766654 334443322222222221 111111111111
Q ss_pred ccccccccChhhHHHHhcccCC-------------CChhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCchhHHHH
Q 046354 284 FWDWGFQLDVNSARLAFERLEA-------------KDVVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGV 349 (510)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l 349 (510)
-+.|..++|..+++.... ....+|-+|.+-....|..+.|++.--.+... .+-|....|+.+
T Consensus 988 ----~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 988 ----DKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred ----hhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 233444444443332221 12234444555556678888777764444431 355666677766
Q ss_pred HHhcCcCCcHHHHHHHHHHHH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~ 370 (510)
.-+.|....+..+-+.|-++.
T Consensus 1064 ALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1064 ALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHhhhhhhhhhHHHHHHHH
Confidence 666665555655555555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00044 Score=67.28 Aligned_cols=146 Identities=14% Similarity=0.011 Sum_probs=102.8
Q ss_pred CCCCCchhHHHHHHhcCc-----CCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhc--------CChHHHHHHHh
Q 046354 338 GTKPDEITFVGVLSDCSH-----AGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRA--------GQVKEAMRVVS 403 (510)
Q Consensus 338 g~~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 403 (510)
+.+.+...|...+++... .++...|..+|+++.+. .|+ ...+..+..++... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345666777777776432 23466888888888864 565 33333333333221 22345555555
Q ss_pred hCCCC---CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 404 KMPPH---ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 404 ~~~~~---~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
+.... ..+...+..+.......|++++|...++++++++|+ ...|..++.++...|+.++|...+++..+--+..|
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 54332 335677887877777789999999999999999995 67899999999999999999999998887777777
Q ss_pred ceeEEEe
Q 046354 481 SFSQIEV 487 (510)
Q Consensus 481 ~~~~~~~ 487 (510)
...|+++
T Consensus 488 t~~~~~~ 494 (517)
T PRK10153 488 TLYWIEN 494 (517)
T ss_pred hHHHHHh
Confidence 7766644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.06 Score=52.32 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=29.8
Q ss_pred hhHhHHhHHhhcCChHHHHHHHh---hCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 381 HYSCLADILRRAGQVKEAMRVVS---KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+|..|.+-....|.++.|...-- ...+.-|...+|+.+.-+.+....+...-+.|-++.
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 33445555556777777765422 222224556666666555444444444444444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0031 Score=56.85 Aligned_cols=119 Identities=12% Similarity=0.082 Sum_probs=66.6
Q ss_pred ccc-cChhhHHHHhcccCC-----CC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-----ch-hHHHHHH
Q 046354 288 GFQ-LDVNSARLAFERLEA-----KD----VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-----EI-TFVGVLS 351 (510)
Q Consensus 288 ~~~-~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-~~~~li~ 351 (510)
... |+++.|.+.|++..+ .. ...+..+...+.+.|++++|.++|++....-...+ .. .|...+-
T Consensus 125 e~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l 204 (282)
T PF14938_consen 125 EEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL 204 (282)
T ss_dssp CCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 444 566666666655443 11 22456677788888899999999988876432211 11 2223333
Q ss_pred hcCcCCcHHHHHHHHHHHHHhh-CCCCC--cchhHhHHhHHhh--cCChHHHHHHHhhCC
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAY-GFKPR--AEHYSCLADILRR--AGQVKEAMRVVSKMP 406 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 406 (510)
++...||+..|.+.+++..... ++..+ -.....|+.++-. ...++.|..-|+.+.
T Consensus 205 ~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 205 CHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4556788888888888876431 12222 2334556666643 334667777777776
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=52.43 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHH
Q 046354 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYI 434 (510)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~ 434 (510)
.|+++.|+.+++++.+.....|+...+..++.+|.+.|++++|..++++ .+..| +......+..++.+.|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4566777777777766521112333444466777777777777777766 32333 223334445566677777777777
Q ss_pred HHH
Q 046354 435 GER 437 (510)
Q Consensus 435 ~~~ 437 (510)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00021 Score=49.23 Aligned_cols=66 Identities=21% Similarity=0.134 Sum_probs=56.0
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
...|.+.+++++|.++++.+....| +...|......+...|++++|.+.+++.++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3567889999999999999988877 56677888888999999999999999999999988765443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00093 Score=50.60 Aligned_cols=88 Identities=19% Similarity=0.048 Sum_probs=62.9
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHH
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGACRLHGDVRMADYIGERLIELQPS---SSGAYVLSANVHA 457 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 457 (510)
+..++-..|+.++|+.+|++.....++ ...+-.+.+.+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455666778888888888776654221 235666777788888888888888888877777 5555666777788
Q ss_pred HcCCChHHHHHHHHH
Q 046354 458 ARGEWDEFAQVRKKM 472 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~ 472 (510)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888776543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0028 Score=57.23 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=51.6
Q ss_pred hhcCChHHHHHHHhhCCCCCC-----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-----DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (510)
.+.|++..|.+.+.+.+...| +...|.....+..+.|+..+|+.-.+.+++++|.-..+|..-++++...++|++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655544 233444444555566666666666666666666666666666666666666666
Q ss_pred HHHHHHHHH
Q 046354 465 FAQVRKKME 473 (510)
Q Consensus 465 A~~~~~~~~ 473 (510)
|.+.++...
T Consensus 340 AV~d~~~a~ 348 (486)
T KOG0550|consen 340 AVEDYEKAM 348 (486)
T ss_pred HHHHHHHHH
Confidence 666666554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.1e-05 Score=42.43 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHH
Q 046354 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467 (510)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (510)
+|+++++++|+++.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788999999999999999999999999999863
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00079 Score=52.92 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=76.3
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
..-.+...+...|++++|.++|+.+..- .| +..-|-.|.-++-..|++++|+..|.......| ++..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3344455566789999999999888753 44 566667788888889999999999988876767 667888888889
Q ss_pred HhhCCHHHHHHHHHHHHhcCCC
Q 046354 423 RLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
...|+.+.|.+.|+.++.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999988866533
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.001 Score=54.72 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=51.9
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH---
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR--- 423 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~--- 423 (510)
+...+...|++++|...|+.......-++ ...++..+..++...|++++|...+++.....| ....+..+...+.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 33334444555555555554443200000 112444455555555555555555555544433 2233444444444
Q ss_pred ----hhCCHH-------HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC
Q 046354 424 ----LHGDVR-------MADYIGERLIELQPSSSGAYVLSANVHAARGEW 462 (510)
Q Consensus 424 ----~~~~~~-------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (510)
..|+++ +|...+++.++.+|++. ......+...|++
T Consensus 121 ~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~ 167 (168)
T CHL00033 121 EQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF 167 (168)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence 555555 55666666667777643 3333334444544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00074 Score=49.13 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccc
Q 046354 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRF-MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285 (510)
Q Consensus 207 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (510)
+....|..+...+++.....+|+.++..|+ -|+..+|+.++.+.....
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~------------------------------- 75 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRE------------------------------- 75 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcc-------------------------------
Confidence 445567777888999999999999999999 899999999998763210
Q ss_pred ccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc
Q 046354 286 DWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH 355 (510)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 355 (510)
+ +...-.++....+.+|+.|...+++|+..||+.++..+.+
T Consensus 76 -------l----------------------D~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 76 -------L----------------------DSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred -------c----------------------cchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 0 0011123456778899999999999999999999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.15 Score=51.25 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=66.7
Q ss_pred ccCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHH
Q 046354 4 FGCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKV 80 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 80 (510)
+.+.|+.++|..+++... ..|..+...+-.+|.+.++.++|..+|++.....|+......+..+|.+.+++.+-.++
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998876 24677788888889999999999999999999999988888889999998887655444
Q ss_pred HHhh
Q 046354 81 FDEI 84 (510)
Q Consensus 81 ~~~~ 84 (510)
--++
T Consensus 133 a~~L 136 (932)
T KOG2053|consen 133 ALQL 136 (932)
T ss_pred HHHH
Confidence 3333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00055 Score=61.40 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=102.4
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh-cCChHHHHHHHhhCCCC-CCcHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR-AGQVKEAMRVVSKMPPH-ERDHVVLGALLGA 421 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~ 421 (510)
.+|..+++..-+.+..+.|..+|.++.+. -..+..+|...+..-.. .++.+.|.++|+...+. ..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35777888888888899999999999853 33355666666555344 56677799999998765 4477889999999
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 422 CRLHGDVRMADYIGERLIELQPSSS---GAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
+...|+.+.|..+|++.+..-|... ..|..++..-.+.|+.+...++.+++..-.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999997666554 45899999999999999999999998854444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.015 Score=50.81 Aligned_cols=157 Identities=11% Similarity=0.026 Sum_probs=93.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCch-hH---HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEI-TF---VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
....+...|++++|...|+.+... -|+.. .. -.+..++.+.++++.|...+++..+.+.-.|+.. +.....+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~~g~ 114 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYMRGL 114 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHHHHH
Confidence 344455567777777777777664 23332 11 2344556677777777777777776543333322 11111111
Q ss_pred h--hc---------------CC---hHHHHHHHhhCCCCCCcHHH-----------H-------HHHHHHHHhhCCHHHH
Q 046354 390 R--RA---------------GQ---VKEAMRVVSKMPPHERDHVV-----------L-------GALLGACRLHGDVRMA 431 (510)
Q Consensus 390 ~--~~---------------g~---~~~A~~~~~~~~~~~p~~~~-----------~-------~~l~~~~~~~~~~~~A 431 (510)
+ .. .+ ..+|...|+.+.+.-|+..- - -.+..-|.+.|.+..|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA 194 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV 194 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 1 01 11 22344445444433332110 0 1233457888999999
Q ss_pred HHHHHHHHhcCCCCchh---HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 432 DYIGERLIELQPSSSGA---YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 432 ~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..-++.+++.-|+.+.. ...+..+|...|..++|..+...+.
T Consensus 195 ~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 195 VNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 99999999888887655 6778889999999999999887664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=56.93 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=72.8
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALL 419 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 419 (510)
.|...+....+.|++++|...|+.+.+.+.-.+ .+..+..+...|...|++++|...|+.+.+..|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556788888888888877521111 1346667888888888888888888887654443 44556667
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSG 447 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 447 (510)
..+...|+.++|..+|+++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7777889999999999999999998753
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0005 Score=41.62 Aligned_cols=42 Identities=26% Similarity=0.248 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
.+|..+...|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999988887764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.12 Score=47.06 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=81.1
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC 422 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 422 (510)
..+.+.-+.-+...|+...|.++-.+. ++ |+...|..-+.+++..|+|++-.++-.. . -++..|.-++.+|
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS-K---KSPIGYEPFVEAC 247 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C---CCCCChHHHHHHH
Confidence 345555666667778877776654443 43 7888888899999999999988886554 2 2347778888999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHH
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKM 472 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 472 (510)
.+.|+..+|..+..++ .+..-+..|.++|+|.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999888888762 2255667788999999987764433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0068 Score=52.85 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=84.6
Q ss_pred CCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC---ChHHHHHHHhhCCCCCC-cHHHH
Q 046354 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG---QVKEAMRVVSKMPPHER-DHVVL 415 (510)
Q Consensus 340 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p-~~~~~ 415 (510)
+-|...|..|...|...|+.+.|...|....+- -.+++..+..+..++..+. ...++..+|+++...+| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 566778999999999999999999999998864 3456777777777765433 35678899999988877 56677
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
..|...+...|++.+|...++.|++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 7777889999999999999999998887763
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.14 Score=47.37 Aligned_cols=408 Identities=12% Similarity=0.057 Sum_probs=225.1
Q ss_pred HHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCCh---hhHHHHHHHHHcCCChHHHHHHHHhccccCCC
Q 046354 45 EALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNV---YSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121 (510)
Q Consensus 45 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 121 (510)
+++=+++.+.+.|..+|-.|+.-+...+..++.++++++|..|-. .+|...+++-...+++.....+|.+-....-+
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 356666666655889999999999999999999999999988754 57888888888889999999999998887677
Q ss_pred hhhHHHHHHHHHhcCCcchh-----hHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHH---HHhcC-----
Q 046354 122 VVSWTTVVLGCAHNGLIAKL-----EVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITA---YVDAG----- 188 (510)
Q Consensus 122 ~~~~~~ll~~~~~~~~~~~a-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~---~~~~g----- 188 (510)
...|...+.-..+.+..-.. -..+|..++.+.. |+ +.....|+..+.. .-..|
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~-----------~e---~~s~~~W~ey~~fle~~~~~~kwEeQ 174 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAI-----------FE---PQSENYWDEYGLFLEYIEELGKWEEQ 174 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhccc-----------cc---ccccchHHHHHHHHHhccccccHHHH
Confidence 77888777765554432221 1112222221000 00 1222233333221 11222
Q ss_pred -CHHHHHHHHhhCCC-C---------ChhhHHHHHHHHHh-------cCChHHHHHHHHHHHH--CCCCC----CHhhHH
Q 046354 189 -NMAQASELFNLMPQ-R---------NVWTWNAMIDRYAR-------NGPEGAAMKLLNLMFQ--SRFMP----NETTCT 244 (510)
Q Consensus 189 -~~~~A~~~~~~~~~-~---------~~~~~~~li~~~~~-------~~~~~~A~~~~~~m~~--~g~~p----~~~~~~ 244 (510)
+.|...+.+.++.. | |-..|..=+..... .--+-.|...++++.. .|... +..|++
T Consensus 175 qrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~n 254 (660)
T COG5107 175 QRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTAN 254 (660)
T ss_pred HHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhc
Confidence 33444445555543 1 11112111111100 1123455555555543 23221 222222
Q ss_pred HHHHHh-hh--------------hhhh--hHHHHHHHHhC---CCcchhhhhhhhhhccccccccccChhhHHHHhcccC
Q 046354 245 SILTSC-EG--------------MLEN--MLAHALAIRLG---FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304 (510)
Q Consensus 245 ~ll~~~-~~--------------~~~~--~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 304 (510)
.+-... .+ +... .+...++.+.+ +.-.+.+|-.....+ ...++-+.|........
T Consensus 255 K~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~-----~~isd~q~al~tv~rg~ 329 (660)
T COG5107 255 KAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYL-----IGISDKQKALKTVERGI 329 (660)
T ss_pred cccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----hhccHHHHHHHHHHhcc
Confidence 211100 00 0000 00000001111 112222332222222 44555666665555444
Q ss_pred C--CChh------------------hHHHHHHHHHh---cCChhhHHHH------HHHHHHcCCCCCchhHHHHHHhcCc
Q 046354 305 A--KDVV------------------SWTAMILAYSN---HGHGFQVFRL------FARMLKSGTKPDEITFVGVLSDCSH 355 (510)
Q Consensus 305 ~--~~~~------------------~~~~l~~~~~~---~g~~~~A~~~------~~~m~~~g~~p~~~~~~~li~~~~~ 355 (510)
. |+.. +|..++..+.+ .++.+.+... ..++.-.....-...|...+....+
T Consensus 330 ~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r 409 (660)
T COG5107 330 EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLR 409 (660)
T ss_pred cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3 2110 12222222211 1111111111 1111100011123456667777777
Q ss_pred CCcHHHHHHHHHHHHHhhC-CCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHH-HHHHHHHHhhCCHHHHHH
Q 046354 356 AGLVEKGRKTFNLMSRAYG-FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVL-GALLGACRLHGDVRMADY 433 (510)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~A~~ 433 (510)
..-++.|..+|-++.+. + +.+++.++++++..++ .|+..-|..+|+-....-||...| +..+..+...++-+.|..
T Consensus 410 ~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 410 KRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 77889999999999988 6 6678899999998776 688899999999876566766655 556667778899999999
Q ss_pred HHHHHHhcCCCC--chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 434 IGERLIELQPSS--SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 434 ~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+|+..++.-... ...|..++.--..-|+...+..+=++|.
T Consensus 488 LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 488 LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 999777333222 3568888888888999988888777776
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0045 Score=46.89 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=61.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCc--hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHh
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDE--ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILR 390 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 390 (510)
...++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345666788888888888888887765542 3555666777888888888888888876521111 2222233445667
Q ss_pred hcCChHHHHHHHhhCC
Q 046354 391 RAGQVKEAMRVVSKMP 406 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~ 406 (510)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7788888887765443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0029 Score=46.13 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCchhHHHHHHhcCcCC--------cHHHHHHHHHHHHHhhCCCCCcc
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPDEITFVGVLSDCSHAG--------LVEKGRKTFNLMSRAYGFKPRAE 380 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 380 (510)
+....|..+...+++.....+|+.++..|+ -|+..+|+.++.+.++.. .+-..+.+++.+... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344556677777999999999999999999 899999999998876432 244577888999888 8999999
Q ss_pred hhHhHHhHHhh
Q 046354 381 HYSCLADILRR 391 (510)
Q Consensus 381 ~~~~l~~~~~~ 391 (510)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99988887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0085 Score=50.80 Aligned_cols=138 Identities=12% Similarity=0.013 Sum_probs=105.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhH-----h
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS-----C 384 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~ 384 (510)
.-+.++..+.-.|.+.--+..+++.++...+.++.....|.+.-.+.||.+.|..+|+...+. .-..+....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 345667777778888888999999998765667777788888888999999999999988776 4444444433 3
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
....|.-++++..|...+.+++..+| ++...|.-.-+..-.|+...|.+..+.+++..|.....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 34456667889999999999987766 55555655555566799999999999999999886544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0027 Score=59.34 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHhhCC-CC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHH
Q 046354 144 ISWTTMCTGLERNAMTKLAREYFVQMP-NK-----DIVAWNAMITAYVDAGNMAQASELFNLMPQ----RNVWTWNAMID 213 (510)
Q Consensus 144 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~ 213 (510)
.....+++.+....+.+.+..++.+.. .| -..|..++|+.|.+.|..++++.+++.=.. ||..++|.|++
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 344455666677777888888877766 22 234667999999999999999999988766 99999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhh
Q 046354 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGM 253 (510)
Q Consensus 214 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 253 (510)
.+.+.|++..|.++..+|...+...+..|+...+.+|...
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888889998888887665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0029 Score=59.17 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=83.4
Q ss_pred ccccChhhHHHHhcccCC-C-----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLEA-K-----DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 361 (510)
....+++.+..++-+... | ...+..+++..|...|..+.++.+++.=...|+-||..|++.|+..+.+.|++..
T Consensus 77 ~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~ 156 (429)
T PF10037_consen 77 ESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKS 156 (429)
T ss_pred CCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHH
Confidence 556667777777776654 1 1235568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcchhHhHHhHHhhc
Q 046354 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (510)
|.++...|... ....++.++..-+.+|.+.
T Consensus 157 A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 157 AAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 99998888776 6666777766555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0056 Score=48.99 Aligned_cols=61 Identities=28% Similarity=0.251 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+...++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|.++|+.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4556677788889999999999999999999999999999999999999999999999987
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.043 Score=52.76 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=56.5
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHH--------
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV-------- 414 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------- 414 (510)
..+...+...+-+...+..|.++|..+-.. .++++.....++|++|..+-++.++..|+...
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 345555555555666777788888877543 45777888889999999998888876665431
Q ss_pred ---HHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 415 ---LGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 415 ---~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
|...-.+|.+.|+-.+|.++++++-
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 1222244556666666666666553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.031 Score=48.91 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 179 AMITAYVDAGNMAQASELFNLMPQ--RN----VWTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
.+...|.+.|.+.-|..-++.+.+ |+ ......++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345667888888877777777665 33 3456677788888888888877766553
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0019 Score=59.87 Aligned_cols=63 Identities=14% Similarity=-0.021 Sum_probs=30.9
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH----HHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV----VLGALLGACRLHGDVRMADYIGERLIEL 441 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (510)
...++.+..+|.+.|++++|+..|++..+..|+.. +|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444455555555555555555555444444322 2455555555555555555555555543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.004 Score=51.51 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=81.1
Q ss_pred hhhHHHHhccc--CCCChhhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC--------
Q 046354 293 VNSARLAFERL--EAKDVVSWTAMILAYSN-----HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG-------- 357 (510)
Q Consensus 293 ~~~a~~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------- 357 (510)
+..-...|+.. ...+-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 33445566665 44778889999988875 4778888888999999999999999999999875422
Q ss_pred --------cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC
Q 046354 358 --------LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394 (510)
Q Consensus 358 --------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (510)
+.+-|++++++|... |+.||.+++..+++.+.+.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 456789999999887 999999999999999877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.02 Score=47.58 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=77.3
Q ss_pred HHHhhC--CCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhC
Q 046354 195 ELFNLM--PQRNVWTWNAMIDRYARN-----GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267 (510)
Q Consensus 195 ~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 267 (510)
..|+.. ...+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.+|...-
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP---------------- 98 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP---------------- 98 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC----------------
Confidence 445544 336777787788777653 666667778888999999999999998887651
Q ss_pred CCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
....+... .+.++..-| -.+-+-|++++++|...|+-||..|+.
T Consensus 99 --Kg~fvp~n--------------------------------~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~ 142 (228)
T PF06239_consen 99 --KGKFVPRN--------------------------------FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQ 142 (228)
T ss_pred --CCCccccc--------------------------------HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 11111000 011111111 234567899999999999999999999
Q ss_pred HHHHhcCcCCcH
Q 046354 348 GVLSDCSHAGLV 359 (510)
Q Consensus 348 ~li~~~~~~g~~ 359 (510)
.++..+.+.+.+
T Consensus 143 ~ll~iFG~~s~p 154 (228)
T PF06239_consen 143 MLLNIFGRKSHP 154 (228)
T ss_pred HHHHHhccccHH
Confidence 999999887654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0041 Score=46.47 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=65.5
Q ss_pred HHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh----HHHHHHHHHHcCCC
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA----YVLSANVHAARGEW 462 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~ 462 (510)
++...|+++.|++.|.+.....| ....||.-..++.-+|+.++|..-+++++++..+...+ |..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45667888888888887776665 66788888888888888888888888888776554333 67777778888888
Q ss_pred hHHHHHHHHHH
Q 046354 463 DEFAQVRKKME 473 (510)
Q Consensus 463 ~~A~~~~~~~~ 473 (510)
+.|..-|+...
T Consensus 132 d~AR~DFe~AA 142 (175)
T KOG4555|consen 132 DAARADFEAAA 142 (175)
T ss_pred HHHHHhHHHHH
Confidence 88888887665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=45.30 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhc----CCCC---chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIEL----QPSS---SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+++.+...|...|++++|+..|++++++ .+++ ..++..++.+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888889999999999988833 2222 2337788888999999999999888765
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.022 Score=45.70 Aligned_cols=134 Identities=10% Similarity=-0.007 Sum_probs=99.5
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
|++..--.|..++...|+..+|...|++...--+.-|......+.++....+++..|...++.+.+...---++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44445556788889999999999999998764355667788888888889999999999999987652111145666678
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
.+.+...|+.++|+..|+...+.-|+...--.....+.++|+..+|..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 899999999999999999888777776655555566677776666554444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.01 Score=45.91 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=45.7
Q ss_pred hHHhhcCChHHHHHHHhhCCCCCC----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 387 DILRRAGQVKEAMRVVSKMPPHER----DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
....+.|++++|.+.|+.+...-| ....--.++.+|.+.|++++|...+++.+++.|.++..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 334567888888888877765433 33455667788888888888888888888888887766
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0044 Score=53.27 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=65.1
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCCCC----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc---hhHHHHH
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPHER----DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS---GAYVLSA 453 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~ 453 (510)
.|+.-+.. .+.|++..|...|....+.-| ....+--|..++...|++++|..+|..+.+-.|+++ ..+..|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444433 356667777777766654322 122333377777888888888888888886666554 4477777
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 454 NVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.+..+.|+.++|...|+.+.+..|..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 778888888888888887776555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0089 Score=54.22 Aligned_cols=94 Identities=18% Similarity=0.100 Sum_probs=79.5
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
.++..+.-++.+.+++.+|++...+.....| |....-.=..+|...|+++.|+..|+++++++|+|-.+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3567788899999999999999999887755 777888888999999999999999999999999998778888777666
Q ss_pred cCCChH-HHHHHHHHH
Q 046354 459 RGEWDE-FAQVRKKME 473 (510)
Q Consensus 459 ~g~~~~-A~~~~~~~~ 473 (510)
..+.++ ..++|..|.
T Consensus 338 ~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 555544 478888887
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.046 Score=46.55 Aligned_cols=128 Identities=12% Similarity=0.006 Sum_probs=101.4
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--CCc-----HHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--ERD-----HVVLGA 417 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~-----~~~~~~ 417 (510)
..+.++..+.-.|.+.-....+.+..+. .-+.++.....|.+.-.+.|+.+.|...|++..+. ..+ ......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3455666777788888888999999885 44557888889999999999999999999855422 222 223333
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
....+.-.+++..|...+.+....+|.++.+-..-+-++.-.|+..+|++.++.|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677899999999999999999999888888888888999999999999887
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.024 Score=51.44 Aligned_cols=130 Identities=15% Similarity=0.039 Sum_probs=94.0
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHH---HHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-------CCcH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLM---SRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH-------ERDH 412 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~ 412 (510)
..|..|...|--.|+++.|+...+.- .+.+|-+. ....+..+..++.-.|+++.|.+.|+..... ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777788999988765432 22333332 3456778889999999999999998765321 2234
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHH----hcCC--CCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLI----ELQP--SSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
....+|...|.-..++++|+..+.+-+ ++.. .....+..|++++...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456678888888889999999888766 2322 234558899999999999999999888766
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.11 Score=48.78 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=72.2
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCc--HHHHHHHHHHHHh
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERD--HVVLGALLGACRL 424 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~--~~~~~~l~~~~~~ 424 (510)
.+..++-+.|+.++|.+.++++.+.+.......+...|+.++...+.+.++..++.+..+. -|. ..+|+..+-....
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 3555566778888888888888765222223446667888888888888888888776543 333 2355554444333
Q ss_pred hCC---------------HHHHHHHHHHHHhcCCCCchhHHHHH------HHHHHcCCChHHHHH
Q 046354 425 HGD---------------VRMADYIGERLIELQPSSSGAYVLSA------NVHAARGEWDEFAQV 468 (510)
Q Consensus 425 ~~~---------------~~~A~~~~~~~~~~~p~~~~~~~~l~------~~~~~~g~~~~A~~~ 468 (510)
.++ -..|.+...++.+.+|..|.....+= ..+.+.|+ .||+.+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaY 407 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAY 407 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHH
Confidence 332 13466778888888887765432211 12455564 555544
|
The molecular function of this protein is uncertain. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.5 Score=45.59 Aligned_cols=384 Identities=14% Similarity=0.134 Sum_probs=222.3
Q ss_pred HHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChh-hHHHHHHHHHcCCChHHHHHHHHhccccCC-Ch
Q 046354 47 LFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVY-SWTSLISGYFKARQVDEGRRLFDRMPLKLK-NV 122 (510)
Q Consensus 47 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~ 122 (510)
.++.......+...+..+|.---...+.+.+..+++.+.. |... -|-.....=.+.|..+.+.++|++-....| ..
T Consensus 34 ~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Sv 113 (577)
T KOG1258|consen 34 YWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSV 113 (577)
T ss_pred HhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH
Confidence 3333333334555566666544444555677777777754 4433 344555555678889999999998877533 12
Q ss_pred hhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCC------CChhHHHHHHHHHHhcCCHHHHHHH
Q 046354 123 VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPN------KDIVAWNAMITAYVDAGNMAQASEL 196 (510)
Q Consensus 123 ~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~ 196 (510)
..|.. | +.......|+.+...+.|+.+.. .+...|...+..-..++++.....+
T Consensus 114 dlW~~------------------Y--~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~i 173 (577)
T KOG1258|consen 114 DLWLS------------------Y--LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANI 173 (577)
T ss_pred HHHHH------------------H--HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHH
Confidence 11211 1 12333467888888888888761 2345677777777888899999999
Q ss_pred HhhCCCCChhhHHHHHHHHHh---------cCChHHHHHHHHHHHHC---C-CCCCHhhHHHHHHHh-------------
Q 046354 197 FNLMPQRNVWTWNAMIDRYAR---------NGPEGAAMKLLNLMFQS---R-FMPNETTCTSILTSC------------- 250 (510)
Q Consensus 197 ~~~~~~~~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~---g-~~p~~~~~~~ll~~~------------- 250 (510)
++++.+-....++..-.-|.+ ....+++.++-...... + ..+........+...
T Consensus 174 yeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~ 253 (577)
T KOG1258|consen 174 YERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTI 253 (577)
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHH
Confidence 999888444444444433332 23456666555444321 0 011111111111100
Q ss_pred ----hhhhh---hhHHHHHHHHhC-----------C----CcchhhhhhhhhhccccccccccChhhHHHHhcccCCCC-
Q 046354 251 ----EGMLE---NMLAHALAIRLG-----------F----EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKD- 307 (510)
Q Consensus 251 ----~~~~~---~~~~~~~~~~~~-----------~----~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~- 307 (510)
..... ...........+ + ++....|...+..- .+.|+.+...-.|++..-|-
T Consensus 254 l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~-----i~~g~~~~~~~l~ercli~cA 328 (577)
T KOG1258|consen 254 LKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFE-----ITLGDFSRVFILFERCLIPCA 328 (577)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhh-----hhcccHHHHHHHHHHHHhHHh
Confidence 00000 000000001111 1 11223445555555 77888888888888776642
Q ss_pred --hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-chh
Q 046354 308 --VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK--PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-EHY 382 (510)
Q Consensus 308 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~ 382 (510)
...|-..+.-....|+.+-|..++....+--++ |....+.+.+ +-..|+++.|..+++.+... . |+. ..-
T Consensus 329 ~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~ 403 (577)
T KOG1258|consen 329 LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVV 403 (577)
T ss_pred hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhH
Confidence 234555555555558888888887776654332 2222333332 34568999999999999886 3 543 333
Q ss_pred HhHHhHHhhcCChHHHH---HHHhhCCCCCCcHHHHHHHHHH-----HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 383 SCLADILRRAGQVKEAM---RVVSKMPPHERDHVVLGALLGA-----CRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
..-+....+.|..+.+. +++....+..-+..+...+.-- +...++.+.|..++.++.+..|++-..|..++.
T Consensus 404 l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 404 LRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIR 483 (577)
T ss_pred HHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHH
Confidence 33455567888888888 6665555333333333333322 344689999999999999999999888999988
Q ss_pred HHHHcC
Q 046354 455 VHAARG 460 (510)
Q Consensus 455 ~~~~~g 460 (510)
.....+
T Consensus 484 ~~~~~~ 489 (577)
T KOG1258|consen 484 FELIQP 489 (577)
T ss_pred HHHhCC
Confidence 876666
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.51 Score=46.68 Aligned_cols=117 Identities=9% Similarity=0.033 Sum_probs=75.1
Q ss_pred CcccCCCChHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChh--hHHHHHH-hccccCCChhHHHHHHHHHHhcCChh
Q 046354 2 SQFGCTGKVKEATKLFDEMSQPD---PVSCASMITVFLRNHDLP--KAEALFR-AMPESQRNIVAESAMIDGYVKAGRVD 75 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~--~A~~~~~-~~~~~~p~~~~~~~li~~~~~~~~~~ 75 (510)
+.+...+.+..|+++-..+..|- ...|.....-+.+..+.. ++++..+ ++...-.....|..+.+.....|+++
T Consensus 445 ~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~ 524 (829)
T KOG2280|consen 445 DRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFE 524 (829)
T ss_pred HHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHH
Confidence 34566788888998888887665 566677777777664332 2222222 22221124456777888888889999
Q ss_pred hHHHHHHhhccC--------ChhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 76 EARKVFDEIYEG--------NVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 76 ~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
.|..+++.=+.. +..-+...+.-....||.+-...++-++.+.
T Consensus 525 LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 525 LARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred HHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 999888764331 2334556666677788887777777766653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.025 Score=48.08 Aligned_cols=49 Identities=16% Similarity=0.010 Sum_probs=38.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHHcCCChHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGA---YVLSANVHAARGEWDEFA 466 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~ 466 (510)
+...|.+.|.+..|..-++.+++.-|+.+.. ...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3456788999999999999999999988665 667778899999887544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.3 Score=41.97 Aligned_cols=165 Identities=16% Similarity=0.086 Sum_probs=105.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC--CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh-
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSG--TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR- 391 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 391 (510)
+..-.+.|++++|...|+.+.... -+-...+...++.++-+.++++.|....++..+.++-.|+.. |...+.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 344456788888888888887642 122234555666677788888888888888887766666543 2223333322
Q ss_pred ------cCChHHHHHH---H----hhCCCC--CCcHHHH------------HHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 392 ------AGQVKEAMRV---V----SKMPPH--ERDHVVL------------GALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 392 ------~g~~~~A~~~---~----~~~~~~--~p~~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
..+...+.+. | ++.+.. .||...- ..+..-|.+.|.+..|..-++++++.-|+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 1222222222 2 233322 2232211 22345688999999999999999988777
Q ss_pred Cchh---HHHHHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 445 SSGA---YVLSANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 445 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.+.+ +..+.++|...|..++|.+.-+-+..+.+..|
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 6655 56677889999999999999888876666655
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.45 Score=43.32 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=79.9
Q ss_pred hHHHHHHHHH--cCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHh
Q 046354 91 SWTSLISGYF--KARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFV 167 (510)
Q Consensus 91 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~ 167 (510)
.|..|-.+++ -.||-..|.++-.+..+. ..|......++. .++-.-.|+++.|.+-|+
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLe-------------------AQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLE-------------------AQAALLEGDYEDARKKFE 144 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHH-------------------HHHHHhcCchHHHHHHHH
Confidence 3555555554 356777777766665543 233333222222 233445688888888888
Q ss_pred hCC-CCChh--HHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 168 QMP-NKDIV--AWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 168 ~~~-~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
.|. .|... -...|.-.--+.|+.+.|...-+..-. | -...+...+...+..|+++.|+++++.-+..
T Consensus 145 AMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 145 AMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 887 33222 122333334567888888888777655 3 3577889999999999999999999887654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.013 Score=49.87 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=70.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCC---chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSGTKPD---EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (510)
...+...|++.+|...|+.+...- +-+ ....-.++.++-+.|+++.|...++...+.+.-.|... +.....+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 344555666666666666666541 111 12333445555566666666666666665432222110 1111111111
Q ss_pred cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-----------------HHHHHH
Q 046354 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA-----------------YVLSAN 454 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~ 454 (510)
...... .+ ......+...+|...|+..+...|+++.. -..++.
T Consensus 90 ~~~~~~---~~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 90 YKQIPG---IL-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHH---HH------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcc---ch-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 00122234456666666666666665433 234567
Q ss_pred HHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 455 VHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
.|.+.|.+..|..-++.+.+..+..|
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 79999999999999998886665544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.17 Score=46.65 Aligned_cols=165 Identities=19% Similarity=0.136 Sum_probs=103.8
Q ss_pred hhhhhhhhccccccccccChhhHHHHhcccCCC-C------hhhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCCc
Q 046354 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-D------VVSWTAMILAYSN---HGHGFQVFRLFARMLKSGTKPDE 343 (510)
Q Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 343 (510)
+...++..| ....+++...++.+.+... + ...--...-++.+ .|+.++|+.++..+....-.+++
T Consensus 143 iv~~lllSy-----RdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 143 IVINLLLSY-----RDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred HHHHHHHHh-----hhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 333455556 8888999999999988773 1 1122234455666 89999999999996666667888
Q ss_pred hhHHHHHHhc---------CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC-hH---HHHHHH---hh---
Q 046354 344 ITFVGVLSDC---------SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ-VK---EAMRVV---SK--- 404 (510)
Q Consensus 344 ~~~~~li~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~--- 404 (510)
.+|..+.+.| ......+.|...|.+.-+ +.|+...--.++..+...|. ++ +..++- ..
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 8888777654 223346677777776543 34544333233333444443 22 222222 11
Q ss_pred ---CCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 405 ---MPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 405 ---~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
..+...+--.+.+++.++.-.|+.++|.+.++++.++.|+..
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 111122344557788888889999999999999998877654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.092 Score=47.86 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=59.0
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCC-----CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhC
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKP-----RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHG 426 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~ 426 (510)
..+.|.+..|.+.+.+.+ ++.| +...|.....+..+.|+..+|+.-.+...++.|. ...+..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 356778888888887776 3444 3445666666677888888888888877744432 223333344556668
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 046354 427 DVRMADYIGERLIELQPS 444 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~ 444 (510)
+|++|++-|+++.+...+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 888888888888755544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.2 Score=48.43 Aligned_cols=102 Identities=11% Similarity=0.065 Sum_probs=50.3
Q ss_pred hhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 293 VNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
.+-+.++-.++...+..+...+..-+-+...+.-|.++|+.|-.. .++++.....+++.+|..+-+...
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP-- 800 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP-- 800 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc--
Confidence 333333333333333333333334444445555566666555321 234555566666666665555443
Q ss_pred hCCCCCcch-----------hHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 373 YGFKPRAEH-----------YSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 373 ~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
.+.|++.. |.-.-.+|.++|+-.+|.++++++.
T Consensus 801 -e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 801 -EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred -cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 22333221 1112345667777778888877776
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.02 Score=43.94 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHc---------------CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKS---------------GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
..++..++.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 346677788888888888777777654311 12344555555555555555555555555555555
Q ss_pred hCCCCCcchhHhHHh
Q 046354 373 YGFKPRAEHYSCLAD 387 (510)
Q Consensus 373 ~~~~~~~~~~~~l~~ 387 (510)
++++.+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 554445455544443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.16 Score=42.96 Aligned_cols=190 Identities=13% Similarity=0.102 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHhccccCC-Ch------hHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHH
Q 046354 26 VSCASMITVFLRNHDLPKAEALFRAMPESQR-NI------VAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISG 98 (510)
Q Consensus 26 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 98 (510)
..|.....+|....++++|...+.+..+..- +. ..|...+-..-....+.++..+++ --...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~e-----------KAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYE-----------KASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHH
Confidence 4566666778778888888887777664311 11 122222222223333444444433 34445
Q ss_pred HHcCCChHHHHHHHHhcccc----CCChh--hHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--
Q 046354 99 YFKARQVDEGRRLFDRMPLK----LKNVV--SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-- 170 (510)
Q Consensus 99 ~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 170 (510)
|..+|.++.|-..+++.-+. .|+.. .|..-+... ..++...--...+....+.+.+...+.+|-..+.+-.
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv-e~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV-EEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH-hccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 66666665555555444332 23211 121111111 1122222223344444555555555555544443332
Q ss_pred ------CCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CChhhHHHHHHHHHhcCChHHHHHHH
Q 046354 171 ------NKDI-VAWNAMITAYVDAGNMAQASELFNLMPQ-------RNVWTWNAMIDRYARNGPEGAAMKLL 228 (510)
Q Consensus 171 ------~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~ 228 (510)
-++. ..|...|-.|.-..++..|.+.++..-+ .+..+...|+.+| ..|+.+++.+++
T Consensus 180 ~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 180 ADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 1121 2344555566667778888888777332 3456666777666 456666655443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.1 Score=46.26 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=110.2
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhH----hHHhHHhhcCCh
Q 046354 320 NHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS----CLADILRRAGQV 395 (510)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 395 (510)
..|++.+|...|+++.+. .|.|...+...=.+|...|+...-...++++.. ...|+...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 357777888888888775 577777777777888888888888888888775 3455654443 344455678889
Q ss_pred HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHcCCChHHHHHHH
Q 046354 396 KEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS----SGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
++|++.-++..+.+| |.-.-.++...+.-.|+.+++.+...+--..-..+ ...|-..+-.+.+.+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999988888886665 44455666667777788888888777653211111 1125555566777788999999988
Q ss_pred HHH-Hhhccccc
Q 046354 471 KME-RRVKKVAS 481 (510)
Q Consensus 471 ~~~-~~~~~~p~ 481 (510)
.-. +...+..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 766 66666555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=53.47 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=73.2
Q ss_pred HhHHhhcCChHHHHHHHhhCCCC----------------CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPH----------------ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~----------------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
...|.+.|++..|..-|+++... ..-..++..+..+|.+.+++..|++..+++++++|+|+...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 34566777777777776654321 12345678888899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 450 VLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+.-+.+|...|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 9999999999999999999998773
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.73 Score=42.02 Aligned_cols=270 Identities=18% Similarity=0.121 Sum_probs=167.7
Q ss_pred cCchHHHHHHHhhCC---CCChhHHHHHHH--HHHhcCCHHHHHHHHhhCCC-CChh--hHHHHHHHHHhcCChHHHHHH
Q 046354 156 NAMTKLAREYFVQMP---NKDIVAWNAMIT--AYVDAGNMAQASELFNLMPQ-RNVW--TWNAMIDRYARNGPEGAAMKL 227 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~~~~~~A~~~ 227 (510)
.|+-..|.++-.+.. ..|....-.++. +-.-.|+.+.|.+-|+.|.. |... ....|.-.-.+.|+.+.|..+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 455556665554433 334333333333 23446888888888888876 3322 233344444567777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--
Q 046354 228 LNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-- 305 (510)
Q Consensus 228 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 305 (510)
-+..-..- | .-+-.+.+.+... +..|+++.|+++.+.-..
T Consensus 177 Ae~Aa~~A--p-------------------------------~l~WA~~AtLe~r-----~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 177 AERAAEKA--P-------------------------------QLPWAARATLEAR-----CAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHHhhc--c-------------------------------CCchHHHHHHHHH-----HhcCChHHHHHHHHHHHHHH
Confidence 66654321 1 1222333444444 899999999999986654
Q ss_pred ---CChh--hHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCCchh-HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC
Q 046354 306 ---KDVV--SWTAMILAYSN---HGHGFQVFRLFARMLKSGTKPDEIT-FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK 376 (510)
Q Consensus 306 ---~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 376 (510)
+++. .-..|+.+-+. ..++..|...-.+..+ +.||... -.....++.+.|+..++-.+++.+-+. .
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---e 293 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---E 293 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---C
Confidence 3332 12223332211 2345555555544444 5677653 334456788999999999999999764 5
Q ss_pred CCcchhHhHHhHHhhcCChHHH--H--HHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 377 PRAEHYSCLADILRRAGQVKEA--M--RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A--~--~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
|-+.+.. +..+.+.|+.... . +-++.|+ ..+....-.+..+....|++..|..-.+......|.. +.|..+
T Consensus 294 PHP~ia~--lY~~ar~gdta~dRlkRa~~L~slk--~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLl 368 (531)
T COG3898 294 PHPDIAL--LYVRARSGDTALDRLKRAKKLESLK--PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLL 368 (531)
T ss_pred CChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHH
Confidence 6665543 3444566763322 1 1233343 3355666777788888999999999999999999986 688889
Q ss_pred HHHHHH-cCCChHHHHHHHHHH
Q 046354 453 ANVHAA-RGEWDEFAQVRKKME 473 (510)
Q Consensus 453 ~~~~~~-~g~~~~A~~~~~~~~ 473 (510)
+.+-.. .|+-.++...+-+..
T Consensus 369 AdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 369 ADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHhhccCchHHHHHHHHHHh
Confidence 888655 599999999888666
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.038 Score=42.85 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=47.1
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH--HHHHHHHHHH--hh----
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV--VLGALLGACR--LH---- 425 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~l~~~~~--~~---- 425 (510)
+.|+++.|.+.|+.+...+...| .....-.|+.+|.+.|++++|...+++..++.|++. -|-..+.++. ..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~ 101 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS 101 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence 44556666666666655432222 223334455566666666666666655554444221 1222222211 11
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCCc
Q 046354 426 -----------GDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 426 -----------~~~~~A~~~~~~~~~~~p~~~ 446 (510)
+....|...|+.+++.-|++.
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 225677888888888888764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.24 Score=48.17 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=105.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC-CCCC-----chhHHHHHHhcC----cCCcHHHHHHHHHHHHHhhCCCCCcch
Q 046354 312 TAMILAYSNHGHGFQVFRLFARMLKSG-TKPD-----EITFVGVLSDCS----HAGLVEKGRKTFNLMSRAYGFKPRAEH 381 (510)
Q Consensus 312 ~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (510)
..++....-.||-+.+++.+.+..+.+ +.-. ...|...+..++ ...+.+.|.++++.+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 334444444566666666666554421 1111 012333333332 356778899999999875 466555
Q ss_pred hH-hHHhHHhhcCChHHHHHHHhhCCCC-----CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-HHHHHH
Q 046354 382 YS-CLADILRRAGQVKEAMRVVSKMPPH-----ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA-YVLSAN 454 (510)
Q Consensus 382 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~l~~ 454 (510)
|. .-.+.+...|++++|++.|++.... +.....+--+...+....++++|...+.++.+.+.-+... +...+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 53 3456677899999999999976642 2245566777888888999999999999999876655444 444556
Q ss_pred HHHHcCCC-------hHHHHHHHHHH
Q 046354 455 VHAARGEW-------DEFAQVRKKME 473 (510)
Q Consensus 455 ~~~~~g~~-------~~A~~~~~~~~ 473 (510)
++...|+. ++|.+++.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 67889998 88888888777
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0081 Score=41.88 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ---------RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.+++.+...|...|++++|+..|++..+ ++ ..+++.+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777777777777777777766543 22 45678888888899999999988887643
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.041 Score=51.38 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHHHHHHH
Q 046354 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
..+|.+.-+...+. -+.|+.....+..+..-.|+++.|..+|++.....||.. +|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444432 122444445555555555556666666666665555433 444444445555666666666666
Q ss_pred HHhcCCCCchh
Q 046354 438 LIELQPSSSGA 448 (510)
Q Consensus 438 ~~~~~p~~~~~ 448 (510)
.++++|.....
T Consensus 398 alrLsP~~~~~ 408 (458)
T PRK11906 398 SLQLEPRRRKA 408 (458)
T ss_pred HhccCchhhHH
Confidence 66666655443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.022 Score=53.04 Aligned_cols=63 Identities=25% Similarity=0.089 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA---YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+...++.+..+|...|++++|+..|+++++++|++... |..++.+|...|+.++|+..+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55577777777777777777777777777777777643 7777777777777777777777666
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.15 E-value=2.2 Score=44.93 Aligned_cols=134 Identities=11% Similarity=-0.009 Sum_probs=64.6
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 367 (510)
-+.|.+.+|..++..-.+.--..|.+....+.+.+.+++|.-.|+..-+ ..-.+.+|...|++.+|+.+..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHH
Confidence 3444444444444333222233444444555555666666666554321 1123455666666666666655
Q ss_pred HHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 046354 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERL 438 (510)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 438 (510)
++.. +-.--..+-..|+.-+...++.-+|-++..+.. .+|.. .+..+++...+++|.++....
T Consensus 990 ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~-sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 990 QLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL-SDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh-cCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 5432 100011112345555666666666666666555 12211 123344445566666666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.83 Score=39.51 Aligned_cols=182 Identities=18% Similarity=0.109 Sum_probs=124.7
Q ss_pred ccccChhhHHHHhcccC-----CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH-hcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLE-----AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS-DCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~ 361 (510)
...+++..+...+.... ......+......+...+++..+...+.........+ ......... .+...|+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (291)
T COG0457 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEE 148 (291)
T ss_pred HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHH
Confidence 55566666666655543 2334456666677777788888888888887643332 122222223 6778889999
Q ss_pred HHHHHHHHHHhhCCCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc--HHHHHHHHHHHHhhCCHHHHHHHH
Q 046354 362 GRKTFNLMSRAYGFKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD--HVVLGALLGACRLHGDVRMADYIG 435 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~ 435 (510)
+...++.... ..| ....+......+...++.+.+...+.+.....|+ ...+..+...+...+++..|...+
T Consensus 149 a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 225 (291)
T COG0457 149 ALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYY 225 (291)
T ss_pred HHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHH
Confidence 9999888843 232 2233333444466778899999888888766554 567777788888888899999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 436 ERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 436 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.......|.....+..++..+...|.++++...+++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 226 EKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988888755566667777667777888888877665
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.72 Score=39.71 Aligned_cols=172 Identities=17% Similarity=0.156 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHhccccCC----ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C--ChhhHHHHH
Q 046354 25 PVSCASMITVFLRNHDLPKAEALFRAMPESQR----NIVAESAMIDGYVKAGRVDEARKVFDEIYE--G--NVYSWTSLI 96 (510)
Q Consensus 25 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~--~~~~~~~li 96 (510)
...|+.-+. -.+.|++++|...|+.+..+.| ...+--.++-++.+.+++++|...+++... | ....|-..|
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344555554 4488999999999999988766 344555667778888999999988888854 2 223455555
Q ss_pred HHHHc-------CCChHHHHHHHHhc---cccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHH
Q 046354 97 SGYFK-------ARQVDEGRRLFDRM---PLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYF 166 (510)
Q Consensus 97 ~~~~~-------~g~~~~A~~~~~~m---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~ 166 (510)
.+++. ..|...+.+.+..+ ...-||..--. .|....
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~----------------------------------dA~~~i 159 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP----------------------------------DAKARI 159 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh----------------------------------hHHHHH
Confidence 55442 22333333333333 33344432100 000000
Q ss_pred hhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 167 VQMPNKDIV--AWNAMITAYVDAGNMAQASELFNLMPQ--RN----VWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 167 ~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
..+ .|.. .=..+.+.|.+.|.+..|..-++++.+ ++ ....-.+..+|.+.|-.++|.+.-.-+..
T Consensus 160 ~~~--~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 160 VKL--NDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHH--HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 000 0000 112355678888888888888887776 22 24456677788888888888776655544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.04 Score=43.99 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH----hhCCCCCcchhH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR----AYGFKPRAEHYS 383 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 383 (510)
....++..+...|++++|..+.+.+.... |-+...|..+|.++...|+...|.+.|+.+.+ ..|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45667777888999999999999999864 66778999999999999999999999887754 348888876643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.4 Score=41.14 Aligned_cols=205 Identities=11% Similarity=0.138 Sum_probs=108.7
Q ss_pred hhhHHHHHHHH--HhcCChhhHHHHHHhcccc----C------------CChhHHHHHHHHHHhcCChhhHHHHHHhhcc
Q 046354 25 PVSCASMITVF--LRNHDLPKAEALFRAMPES----Q------------RNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86 (510)
Q Consensus 25 ~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~----~------------p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 86 (510)
...|-.+..++ -+.+++.+|.+.+.....+ . +|-..-+..++++...|++.+++.+++++.+
T Consensus 77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 45566666554 3789999999988776654 1 1222334667888999999999999999844
Q ss_pred --------CChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCCh-hhHHHHHHHHHhcCCcchh--------hHHHHHH
Q 046354 87 --------GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNV-VSWTTVVLGCAHNGLIAKL--------EVISWTT 148 (510)
Q Consensus 87 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~-~~~~~ll~~~~~~~~~~~a--------~~~~~~~ 148 (510)
-++.+|+.++-.+.++ .|-++++. .-|. .-|..++-.|.+.-+.-+. .......
T Consensus 157 ~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~ 228 (549)
T PF07079_consen 157 RLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFST 228 (549)
T ss_pred HHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHH
Confidence 3778898877666543 22222221 0110 1122222222221111010 1111122
Q ss_pred HHHHHH-----hcCchHHHHHHHhhCC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhhHHHHHH
Q 046354 149 MCTGLE-----RNAMTKLAREYFVQMP-NKDI-VAWNAMITAYVDAGNMAQASELFNLMPQ--------RNVWTWNAMID 213 (510)
Q Consensus 149 l~~~~~-----~~~~~~~a~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 213 (510)
++.... +..-+-.+.+.++.-- .|+- -+...++..+.. +.+++..+-+.+.. .=+.+|..++.
T Consensus 229 imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 229 IMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 222111 1112223444443332 3432 233344444444 44444444333321 34567888999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 046354 214 RYARNGPEGAAMKLLNLMFQSRFMPNET 241 (510)
Q Consensus 214 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 241 (510)
...+.++...|.+.+.-+.- +.|+..
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~--ldp~~s 332 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKI--LDPRIS 332 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHh--cCCcch
Confidence 99999999999888877655 445444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.053 Score=46.82 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=71.3
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC----cHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER----DHVVLGALL 419 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~ 419 (510)
.|+..+.. ...|++..|.+.|....+.+.-.+ .+..+-.|.+.+...|++++|..+|..+.+..| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555544 345678888888888877431111 344556688888888888888888776654422 345666777
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
....+.|+.++|..+|+++.+.-|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77788888888888888888888887644
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.014 Score=52.86 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC---------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------C
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP---------NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---------R 203 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~ 203 (510)
...++..+.+++.-.|+++.|.+.|+... .....+..+|.+.|.-..++++|+..+.+-.. -
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55566777777788888888888777644 12233455667777777778888777654322 2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
....+-.|..+|...|..++|+.+.+.-++.
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3456777888888888888888877766553
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.27 Score=41.66 Aligned_cols=169 Identities=11% Similarity=0.010 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHh
Q 046354 58 IVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAH 134 (510)
Q Consensus 58 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~ 134 (510)
...|..-..+|...+++++|...+.+..+ .|...|++ ...++.|.-+.+++.+...-+..+.--...|..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34566666778888999999998888753 33333322 223445555555555432223334555556777
Q ss_pred cCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---C---C---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 046354 135 NGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---N---K---DIVAWNAMITAYVDAGNMAQASELFNLMPQ--- 202 (510)
Q Consensus 135 ~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~---~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 202 (510)
.|..+.+.. +.....+ .....+++.|++++++.. . . -...+....+.+.+..++++|-..|.+-..
T Consensus 104 ~GspdtAAm-aleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 104 CGSPDTAAM-ALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred hCCcchHHH-HHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence 777766411 1111111 234567888888887765 1 1 123455666777777888877666654432
Q ss_pred -----CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 046354 203 -----RNV-WTWNAMIDRYARNGPEGAAMKLLNLMFQSR 235 (510)
Q Consensus 203 -----~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 235 (510)
++. ..|-..|-.+.-..++..|.+.+++--+.+
T Consensus 182 ~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 182 KCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 221 235566666777788889988888755443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.36 Score=45.41 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=53.6
Q ss_pred ChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 394 QVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 394 ~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
...+|.++-++..+..| |+.+...+..+....++++.|...|+++..++|+.+..+...+.+..-.|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455566666665555 5556555666556666677777777777777777777777777777777777777777776
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.56 Score=43.32 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC---CCCCchhHHHHHHhcCc---CCcHHHHHHHHHHHHHhhCCCCCcchhHh
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSG---TKPDEITFVGVLSDCSH---AGLVEKGRKTFNLMSRAYGFKPRAEHYSC 384 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 384 (510)
.-.++-+|....+++.-.++.+.|...- +.-+...--...-++.+ .|+.++|++++..+... .-.+++.++..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 3355557888999999999999998641 11111111123334555 89999999999996665 67788899988
Q ss_pred HHhHHh----h-----cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCC-HH---HHHHHH---HHHH-hc---CCC
Q 046354 385 LADILR----R-----AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGD-VR---MADYIG---ERLI-EL---QPS 444 (510)
Q Consensus 385 l~~~~~----~-----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~---~A~~~~---~~~~-~~---~p~ 444 (510)
+...|- . ....++|+..|.+.-+..|+...--.++..+...|. .+ +..++. ...+ +. .+.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 887763 2 224788999999887777766544444443333332 22 222222 1111 11 121
Q ss_pred -CchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 445 -SSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 445 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+..-+.+++.+..-.|+.++|.+..++|.+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 122266788889999999999999999883
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.024 Score=31.78 Aligned_cols=32 Identities=28% Similarity=0.141 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
.+|..+...|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.052 Score=44.20 Aligned_cols=103 Identities=17% Similarity=0.050 Sum_probs=72.4
Q ss_pred HhcCcCCcHHHHHHHHHHHHHhhCCCCCc-----chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRA-----EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
.-+...|++++|..-|..+... +++.. ..|..-.-++.+.+.++.|+.-..+.+++.| .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3466788899988888888873 34432 2344445567788888888888888886766 33344445567778
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 425 HGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
...+++|+.-|+++++.+|....+-...+.+
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 8888889999998888888876554444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.036 Score=30.99 Aligned_cols=33 Identities=24% Similarity=0.087 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
..|..+...+...|++++|.+.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777788888888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=2.8 Score=42.56 Aligned_cols=114 Identities=8% Similarity=-0.049 Sum_probs=51.8
Q ss_pred CChhhHHHHHHHHHHc-CCCCCch--hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHH
Q 046354 322 GHGFQVFRLFARMLKS-GTKPDEI--TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398 (510)
Q Consensus 322 g~~~~A~~~~~~m~~~-g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (510)
.+.+.|..++...... ++.+... ....+.......+..+++...++..... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 4456666666655332 2222221 1222222222222134444544443321 12334444444454566666666
Q ss_pred HHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 046354 399 MRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERL 438 (510)
Q Consensus 399 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 438 (510)
...+..|+.... ...-.-=+..++...|+.++|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666653211 1222222344444566666666666665
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.66 Score=40.77 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=57.5
Q ss_pred cCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhH--HHHHHHHHHhcCChhhHHH
Q 046354 5 GCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVA--ESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~li~~~~~~~~~~~A~~ 79 (510)
...|++.+|..+|.... +.+...-..++++|...|+.+.|..++..+.....+... ...-|..+.+.....+...
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 34555566666555554 223444455566666666666666666666554222211 1223344444444444444
Q ss_pred HHHhhc-cC-ChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 046354 80 VFDEIY-EG-NVYSWTSLISGYFKARQVDEGRRLFDRMPL 117 (510)
Q Consensus 80 ~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 117 (510)
+-...- .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333331 23 445555666666666666666665555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.1 Score=38.84 Aligned_cols=164 Identities=16% Similarity=0.067 Sum_probs=124.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-chhHhH
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-EHYSCL 385 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 385 (510)
...+......+...++...+...+...... ........+......+...++...+...+...... .++. ......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL---DPDPDLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC---CCCcchHHHHH
Confidence 456667777888899999999888887752 23445556666677777788889999999888753 2322 223333
Q ss_pred Hh-HHhhcCChHHHHHHHhhCCCCCC----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHc
Q 046354 386 AD-ILRRAGQVKEAMRVVSKMPPHER----DHVVLGALLGACRLHGDVRMADYIGERLIELQPS-SSGAYVLSANVHAAR 459 (510)
Q Consensus 386 ~~-~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 459 (510)
.. .+...|+++.|...+.+.....| ....+......+...++.+.+...+.+..+..|. ....+..++..+...
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 33 78899999999999998864444 2233444444467789999999999999999998 688899999999999
Q ss_pred CCChHHHHHHHHHHH
Q 046354 460 GEWDEFAQVRKKMER 474 (510)
Q Consensus 460 g~~~~A~~~~~~~~~ 474 (510)
|+++.|...+.....
T Consensus 216 ~~~~~a~~~~~~~~~ 230 (291)
T COG0457 216 GKYEEALEYYEKALE 230 (291)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999997773
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.78 Score=34.88 Aligned_cols=139 Identities=15% Similarity=0.098 Sum_probs=81.0
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHH
Q 046354 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEA 398 (510)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (510)
.-.|..++..+++.+.... .+..-++.+|--....-+-+-..+.++.+-+ -.|.. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk----iFDis----------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK----IFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG----GS-GG----------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh----hcCch----------hhcchHHH
Confidence 3467788888888887764 2444555555433333333444455555433 33332 34555555
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH-Hhhc
Q 046354 399 MRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRVK 477 (510)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 477 (510)
..-+-.+- .+.......+.....+|.-++-.+++..+.+.+..+|.....++.+|.+.|+..++-+++.+.. +|++
T Consensus 76 i~C~~~~n---~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN---KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55444433 3445556667788888999999999998876666677889999999999999999999999887 6654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.3 Score=37.53 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=40.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHhhHHHHHHH
Q 046354 203 RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ-SRFMPNETTCTSILTS 249 (510)
Q Consensus 203 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~ 249 (510)
|+..+..+++.+|+.+|++..|+++.+...+ -+++.+..++..++.=
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7888999999999999999999999999766 4677778888888773
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.3 Score=42.54 Aligned_cols=131 Identities=13% Similarity=0.104 Sum_probs=68.5
Q ss_pred HHHHhcCChhhHHHHHH--hhc-cCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhh
Q 046354 66 DGYVKAGRVDEARKVFD--EIY-EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142 (510)
Q Consensus 66 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~ 142 (510)
....-.++++++.+..+ .+. .-...-.+.+++.+-+.|..+.|+++-+.-..
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------------------- 323 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------------------- 323 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------------------
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------------------
Confidence 33344566666555443 111 11233466666666677777777666432211
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChH
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEG 222 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 222 (510)
-.+...+.|+++.|.++.++. ++...|..|.....+.|+++-|.+.|.+..+ |..|+-.|...|+.+
T Consensus 324 ------rFeLAl~lg~L~~A~~~a~~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 324 ------RFELALQLGNLDIALEIAKEL--DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDRE 390 (443)
T ss_dssp ------HHHHHHHCT-HHHHHHHCCCC--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HH
T ss_pred ------HhHHHHhcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHH
Confidence 122344566666666665554 3555777777777777777777777776654 445555666677766
Q ss_pred HHHHHHHHHHHC
Q 046354 223 AAMKLLNLMFQS 234 (510)
Q Consensus 223 ~A~~~~~~m~~~ 234 (510)
+-.++.+.....
T Consensus 391 ~L~kl~~~a~~~ 402 (443)
T PF04053_consen 391 KLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 655555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.18 Score=48.22 Aligned_cols=154 Identities=10% Similarity=0.106 Sum_probs=86.4
Q ss_pred CCChHHHHHHHh--hcC-CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHh
Q 046354 7 TGKVKEATKLFD--EMS-QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83 (510)
Q Consensus 7 ~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 83 (510)
+|+++++.+... .+. .-+....+.+++-+-+.|.++.|+++-+.-. .-.....+.|+++.|.++.+.
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----------~rFeLAl~lg~L~~A~~~a~~ 343 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD----------HRFELALQLGNLDIALEIAKE 343 (443)
T ss_dssp TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----------HHHHHHHHCT-HHHHHHHCCC
T ss_pred cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH----------HHhHHHHhcCCHHHHHHHHHh
Confidence 456666544444 111 1224557777888888888888887744322 345666778888888887666
Q ss_pred hccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHH
Q 046354 84 IYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAR 163 (510)
Q Consensus 84 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~ 163 (510)
.. +...|..|.....+.|+++-|.+.|.+..+ |..|+- .|.-.|+.+...
T Consensus 344 ~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~l---------------------Ly~~~g~~~~L~ 393 (443)
T PF04053_consen 344 LD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLL---------------------LYSSTGDREKLS 393 (443)
T ss_dssp CS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHH---------------------HHHHCT-HHHHH
T ss_pred cC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHH---------------------HHHHhCCHHHHH
Confidence 54 556899999999999999999999988876 333333 344444444444
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 046354 164 EYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202 (510)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 202 (510)
++.+..... .-++....++.-.|+.++..+++.+..+
T Consensus 394 kl~~~a~~~--~~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 394 KLAKIAEER--GDINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHHHHT--T-HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHc--cCHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 443332211 1133334445556777777777665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.023 Score=34.27 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=27.2
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGAL 418 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 418 (510)
.++..+...|.+.|++++|+++++++.+..| |...|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 3556677788888888888888888876677 44454443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.8 Score=38.16 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=23.2
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHH
Q 046354 319 SNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369 (510)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 369 (510)
...|++.+|..+|+...... +-+...-..++.++...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455555555555554431 222233334444455555555555555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.18 Score=43.60 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=84.0
Q ss_pred hhHHHHhcccC--CCChhhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC---------
Q 046354 294 NSARLAFERLE--AKDVVSWTAMILAYSN-----HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG--------- 357 (510)
Q Consensus 294 ~~a~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--------- 357 (510)
-..+..|.... +.+-.+|-.++..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 33455666665 4677788888877764 3567777778899999999999999999998875533
Q ss_pred -------cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCCh-HHHHHHHhhCC
Q 046354 358 -------LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV-KEAMRVVSKMP 406 (510)
Q Consensus 358 -------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 406 (510)
+-+-++.++++|... |+.||.++-..|+.++.+.|.. .+..++.--|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234588999999887 9999999999999999888763 33444443343
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=4.4 Score=41.26 Aligned_cols=437 Identities=9% Similarity=-0.082 Sum_probs=216.0
Q ss_pred cCCCChHHHHHHHhhcCCCChhhHHHHHHHHHh--cCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 046354 5 GCTGKVKEATKLFDEMSQPDPVSCASMITVFLR--NHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
.+.|++..+.++-..+..+....|..-...... ...+++...++++-.........-...+..+.+.++++...+.+.
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~ 123 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP 123 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC
Confidence 356677777777776653333333222222212 234555666555554432223333445566677888888887432
Q ss_pred hhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHH
Q 046354 83 EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161 (510)
Q Consensus 83 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 161 (510)
.- ..+......+..+....|+.++|......+-.. ......++.++..+...|.....+ .+ .-+......|+...
T Consensus 124 ~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d--~w-~R~~~al~~~~~~l 199 (644)
T PRK11619 124 EK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA--YL-ERIRLAMKAGNTGL 199 (644)
T ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH--HH-HHHHHHHHCCCHHH
Confidence 32 345555667788888899988887777766444 456778999999999888776543 22 33555567888888
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH--HhcCChHHHHHHHHHHHHCC-CCC
Q 046354 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY--ARNGPEGAAMKLLNLMFQSR-FMP 238 (510)
Q Consensus 162 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~g-~~p 238 (510)
|..+...+.+........++..+. +...+..++.... ++...-..++.++ ....+.+.|..++....... ..+
T Consensus 200 A~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~ 275 (644)
T PRK11619 200 VTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNE 275 (644)
T ss_pred HHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCH
Confidence 888888773222223334444333 3333443333332 2221111111122 23556788999988874433 333
Q ss_pred CHhhHH--HHHHHhhhhhhhhHHHHHHHHh-CCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C-ChhhHH
Q 046354 239 NETTCT--SILTSCEGMLENMLAHALAIRL-GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-DVVSWT 312 (510)
Q Consensus 239 ~~~~~~--~ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~ 312 (510)
...... .+.................... ....+..+....+... ...++++.+...+..|.. . ...-.-
T Consensus 276 ~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~A-----l~~~dw~~~~~~i~~L~~~~~~~~rw~Y 350 (644)
T PRK11619 276 DQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMA-----LGTGDRRGLNTWLARLPMEAKEKDEWRY 350 (644)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHH-----HHccCHHHHHHHHHhcCHhhccCHhhHH
Confidence 222111 1110000000000000000000 0111223333333333 556677777777776654 1 111222
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHH-HHHHHHHHHhhCCCCCcchhHhHHhHHhh
Q 046354 313 AMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKG-RKTFNLMSRAYGFKPRAEHYSCLADILRR 391 (510)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (510)
=+..++...|+.++|...|+.+.. . .+|-.++.+ .+.|..-.- ......-.. .+...+ -..-+..+..
T Consensus 351 W~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa-~~Lg~~~~~~~~~~~~~~~--~~~~~~--~~~ra~~L~~ 419 (644)
T PRK11619 351 WQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA-QRLGEEYPLKIDKAPKPDS--ALTQGP--EMARVRELMY 419 (644)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH-HHcCCCCCCCCCCCCchhh--hhccCh--HHHHHHHHHH
Confidence 244555556777777777777632 1 123222211 111111000 000000000 000001 1122445567
Q ss_pred cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCCchhHHHHHHHHHHcCCChHHH
Q 046354 392 AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQ---PSSSGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~ 466 (510)
.|....|...+..+... .+......+.......|....++.........+ -.-|..|......+.+.-..+.++
T Consensus 420 ~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 420 WNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHH
Confidence 78888888887766633 444555555555567788888877776543211 122334555666666666666655
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.4 Score=34.80 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=53.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCCh
Q 046354 27 SCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQV 105 (510)
Q Consensus 27 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 105 (510)
....++..+.+.+.+.....+++.+...++ +....+.++..|++.+ .....+.++. ..+......+++.|.+.+.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 345667777777778888888887766533 4556777777777653 3333344332 23444445566666666666
Q ss_pred HHHHHHHHhccc
Q 046354 106 DEGRRLFDRMPL 117 (510)
Q Consensus 106 ~~A~~~~~~m~~ 117 (510)
+++.-++.++..
T Consensus 86 ~~~~~l~~k~~~ 97 (140)
T smart00299 86 EEAVELYKKDGN 97 (140)
T ss_pred HHHHHHHHhhcC
Confidence 666666665543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.00 E-value=3.1 Score=38.92 Aligned_cols=150 Identities=10% Similarity=-0.029 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---CchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC--cch
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP---DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR--AEH 381 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 381 (510)
...+|..++..+.+.|+++.|...+..+...+..+ ++.....-+...-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44578888889999999999999999887743221 2233333344555678888998888888773 22221 111
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhh------CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH------GDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
...+...... ..+.....-..-.....-..++..+...+... ++.+++...|+++.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000000000000122333333333344 788999999999999999988888888877
Q ss_pred HHHc
Q 046354 456 HAAR 459 (510)
Q Consensus 456 ~~~~ 459 (510)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6553
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.55 Score=42.31 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=73.0
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCCC----C-Cc------H
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPPH----E-RD------H 412 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-p~------~ 412 (510)
++..++...+.++++++.|+...+-..-.. ...++..|...|.+..++++|.-+..+..+. . .| .
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344556666677777777777655311111 2346677777777777777776555444321 1 11 1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCCCc----hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIEL--QPSSS----GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
...-.+..++...|....|.+..+++.++ ...+. .....++++|...|+.+.|..-|+...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12233445566777777777777776532 22222 225567777888888777777776554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.43 Score=38.10 Aligned_cols=86 Identities=9% Similarity=-0.009 Sum_probs=52.4
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
+...|++++|..+|+-+...+ .-+..-+..|..++-..++++.|...|.....- . .-|+..+-....+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHH
Confidence 445677777777777766543 223334444555555667777777777666543 2 2344444556667777777777
Q ss_pred HHHHHhhCC
Q 046354 398 AMRVVSKMP 406 (510)
Q Consensus 398 A~~~~~~~~ 406 (510)
|...|+...
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 777776665
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=2 Score=35.99 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=102.8
Q ss_pred ccChhhHHHHhcccCC--CC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH--hcCcCCcHHHHHH
Q 046354 290 QLDVNSARLAFERLEA--KD-VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS--DCSHAGLVEKGRK 364 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~ 364 (510)
.|-+..|+--|.+... |+ +..||-+.--+...|+++.|.+.|+...+.. |+ .-|..+=+ ++--.|++..|.+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHH
Confidence 3444444444444332 33 4578888888889999999999999988753 33 22333322 3345788988888
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHH-HHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM-RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
-+-..-+.-...|-...|-.+. .+.-++.+|. .+.++.. ..|..-|...+..+.-..-. .+.+++++..-..
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~--~~d~e~WG~~iV~~yLgkiS--~e~l~~~~~a~a~ 227 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE--KSDKEQWGWNIVEFYLGKIS--EETLMERLKADAT 227 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH--hccHhhhhHHHHHHHHhhcc--HHHHHHHHHhhcc
Confidence 7766655312222222332222 2344566665 4455555 55556665555444322111 1224444443333
Q ss_pred CC-------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 444 SS-------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 444 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++ ..+|.-|+..+...|+.++|..+|+...
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 33 3458889999999999999999999877
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.6 Score=34.33 Aligned_cols=128 Identities=9% Similarity=0.023 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
.....++..+...+.+..+..+++.+...+ ..+....+.++..|++.+ .......++. .++.......+..
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 344567777777888999999999988876 466678888888887653 3444444442 1233333457778
Q ss_pred HhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH-GDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
|.+.+.++++..++.++. . ...+ +..+... ++++.|.+.+.+ +.++..|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~--~-~~~A----l~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDG--N-FKDA----IVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhc--C-HHHH----HHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 888888888888888875 1 1222 3333333 788888888875 345667777766654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.35 Score=47.03 Aligned_cols=143 Identities=22% Similarity=0.226 Sum_probs=100.1
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-----chhHhHHhHHh----hcCChHHH
Q 046354 328 FRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-----EHYSCLADILR----RAGQVKEA 398 (510)
Q Consensus 328 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~----~~g~~~~A 398 (510)
..+|+-+... +||. +..++....-.||-+.+++.+....+..++.-.. -.|...+..++ .....+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555553 4554 4556666777899999999998877642333222 22333333333 24568899
Q ss_pred HHHHhhCCCCCCcHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 399 MRVVSKMPPHERDHVVLGALLG-ACRLHGDVRMADYIGERLIELQPS----SSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.++++.+.+.-|+...|...-. .+...|+.++|++.|+++...... ..-.+..+++.+.-.++|++|...+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999999977898887766554 456779999999999987732221 12237788999999999999999999998
Q ss_pred H
Q 046354 474 R 474 (510)
Q Consensus 474 ~ 474 (510)
+
T Consensus 333 ~ 333 (468)
T PF10300_consen 333 K 333 (468)
T ss_pred h
Confidence 3
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.55 Score=40.77 Aligned_cols=114 Identities=11% Similarity=0.124 Sum_probs=75.0
Q ss_pred HHHHhhCC--CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHh
Q 046354 194 SELFNLMP--QRNVWTWNAMIDRYAR-----NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266 (510)
Q Consensus 194 ~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 266 (510)
.+.|.... ++|-.+|-+.+..+.. .+..+=....++.|.+-|+.-|..+|+.+|....+
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-------------- 119 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-------------- 119 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc--------------
Confidence 44555555 3677777777776654 34566666778889999999999999888875411
Q ss_pred CCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
| ..+. ...+....-.|-++ -+=+++++++|...|+.||..+-
T Consensus 120 g----kfiP--------------------------------~nvfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e 161 (406)
T KOG3941|consen 120 G----KFIP--------------------------------QNVFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIE 161 (406)
T ss_pred c----cccc--------------------------------HHHHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHH
Confidence 0 0000 00111112222222 24478899999999999999999
Q ss_pred HHHHHhcCcCCcH
Q 046354 347 VGVLSDCSHAGLV 359 (510)
Q Consensus 347 ~~li~~~~~~g~~ 359 (510)
..|++++.+.+-.
T Consensus 162 ~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 162 DILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhcccccc
Confidence 9999999887753
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.5 Score=42.07 Aligned_cols=117 Identities=14% Similarity=0.059 Sum_probs=93.2
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHH----HHHHHhhCCHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGAL----LGACRLHGDVR 429 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l----~~~~~~~~~~~ 429 (510)
..|+..+|...|+++.+ ..|.|...+.---+++.-.|+.+.-...++++... .|+...|.-+ .-++...|-+.
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45677788888999988 45667777777777888889988888888887755 6666554433 33456789999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+|++..++.++++|.+.-+...++-++.-.|+.+++.+...+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999998888899999999999999998776443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.13 Score=45.68 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=71.9
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCC-CcHHHHHHHHHHHHhhCC
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHE-RDHVVLGALLGACRLHGD 427 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~ 427 (510)
..-|.+.|.+++|+..|..... ..| ++.++..-..+|.+..++..|+.-......+. .-...|+.-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999888774 355 88888888888999999888887776666332 123355555566566788
Q ss_pred HHHHHHHHHHHHhcCCCCchh
Q 046354 428 VRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~ 448 (510)
..+|.+-++.++++.|++...
T Consensus 181 ~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHH
Confidence 899999999999999986443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.2 Score=32.52 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMP---QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 237 (510)
.....+......|+-|+-.+++..+. ++++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34556777888899888888888875 378888888899999999999999999999888853
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.15 Score=28.45 Aligned_cols=31 Identities=26% Similarity=0.138 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
+|..+...|...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777777664
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.12 Score=29.37 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHH
Q 046354 415 LGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
|..|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555555
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.70 E-value=17 Score=42.00 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=95.6
Q ss_pred HHHHHHHhcCChhhHHHHHHhc----cccCCChhHHHHHHHHHHhcCChhhHHHHHHh-hccCChhhHHHHHHHHHcCCC
Q 046354 30 SMITVFLRNHDLPKAEALFRAM----PESQRNIVAESAMIDGYVKAGRVDEARKVFDE-IYEGNVYSWTSLISGYFKARQ 104 (510)
Q Consensus 30 ~li~~~~~~~~~~~A~~~~~~~----~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 104 (510)
.+..+-.+.+.+.+|.-.+++- .+..-....|..+...|...+++|....+... ..+|+. ..-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 5556667889999999999984 22222344555566699999999999888874 444433 233445667899
Q ss_pred hHHHHHHHHhccccCCC-hhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHH-
Q 046354 105 VDEGRRLFDRMPLKLKN-VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNA- 179 (510)
Q Consensus 105 ~~~A~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~- 179 (510)
+..|...|+++.+..|+ ...++.++......+.++. +.-..+-.. .+....+++
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t---------------------~i~~~dg~~~~~se~~~~~~s~ 1523 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLST---------------------EILHLDGLIINRSEEVDELNSL 1523 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhH---------------------HHhhhcchhhccCHHHHHHHHH
Confidence 99999999999998554 6566655555444443332 222222222 122222222
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH
Q 046354 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAM 211 (510)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 211 (510)
=+.+-.+.+++|....... ..+..+|...
T Consensus 1524 ~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1524 GVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred HHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 2344477788888777766 4455555444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.7 Score=37.99 Aligned_cols=135 Identities=12% Similarity=0.185 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHh
Q 046354 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300 (510)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 300 (510)
+++.+.+++.|.+.|+.-+..+|-+...-....... ........|..+|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~-------------------------------~~~~~~~ra~~iy 126 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKE-------------------------------DYDEIIQRAKEIY 126 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccc-------------------------------cHHHHHHHHHHHH
Confidence 345567889999999998887776644432110000 1122456788888
Q ss_pred cccCC-------CChhhHHHHHHHHHhcCC----hhhHHHHHHHHHHcCCCCCch--hHHHHHHhcCcCCc--HHHHHHH
Q 046354 301 ERLEA-------KDVVSWTAMILAYSNHGH----GFQVFRLFARMLKSGTKPDEI--TFVGVLSDCSHAGL--VEKGRKT 365 (510)
Q Consensus 301 ~~~~~-------~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~--~~~a~~~ 365 (510)
+.|++ ++-.++..++.. ..++ .+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++
T Consensus 127 ~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 127 KEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH
Confidence 88887 233455555443 3333 356778888898888776554 33334433332222 4578889
Q ss_pred HHHHHHhhCCCCCcchhHhHHhHH
Q 046354 366 FNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
++.+.+. |+++....|..+.-..
T Consensus 205 ~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 205 YNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHc-CCccccccccHHHHHH
Confidence 9999988 9999888877665433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.48 Score=42.65 Aligned_cols=150 Identities=9% Similarity=-0.022 Sum_probs=90.3
Q ss_pred HhcCChhhHHHHHHhhccC------ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhh
Q 046354 69 VKAGRVDEARKVFDEIYEG------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLE 142 (510)
Q Consensus 69 ~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~ 142 (510)
...++.+.|+..+....+. -..+|..+..+..+.|.+++++..--.-.+. .....+- .--
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~-------------a~~~~ds-~~~ 82 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDT-------------ARELEDS-DFL 82 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH-------------HHHHHHH-HHH
Confidence 4567788888887776542 2346677777777777777665432211110 0000000 002
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCC-----C---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CCh
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMP-----N---KDIVAWNAMITAYVDAGNMAQASELFNLMPQ---------RNV 205 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~ 205 (510)
-..|..+.+++.+.-++.+++.+-..-. . .......++..++.-.+.++++++.|+...+ -..
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 2344555666666666666655544332 1 1123445567778888889999998887654 124
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMF 232 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~ 232 (510)
.++-.|...|.+..|+++|+-+..+..
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 678889999999999999987766553
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.57 E-value=2.9 Score=33.80 Aligned_cols=34 Identities=3% Similarity=-0.038 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHH
Q 046354 330 LFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGR 363 (510)
Q Consensus 330 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 363 (510)
+++.+.+.|++|+...+..++..+.+.|.+....
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444555555555555555555555544433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=5.4 Score=35.81 Aligned_cols=228 Identities=12% Similarity=-0.018 Sum_probs=120.1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHhhHHH
Q 046354 170 PNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPE----GAAMKLLNLMFQSRFMPNETTCTS 245 (510)
Q Consensus 170 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~g~~p~~~~~~~ 245 (510)
..+|..+....+.++...|..+-...+..-+..+|...-...+.++...|+. +++...+..+.. -.|+...-..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~--~D~d~~VR~~ 110 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL--EDKSACVRAS 110 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh--cCCCHHHHHH
Confidence 3577777777777777777644444444434456777666777777777763 356666666533 2233333333
Q ss_pred HHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcc-cCCCChhhHHHHHHHHHhcCCh
Q 046354 246 ILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER-LEAKDVVSWTAMILAYSNHGHG 324 (510)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 324 (510)
.+.+++...... ......+...+.. +..++..+-...+.++.+.++
T Consensus 111 A~~aLG~~~~~~--------------------------------~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 111 AINATGHRCKKN--------------------------------PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred HHHHHhcccccc--------------------------------cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-
Confidence 333332211000 0001112222211 222344444455666666665
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC-cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHh
Q 046354 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG-LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403 (510)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (510)
..+...+-.+.+ .+|...-...+.++...+ +.+.+...+..+.. .++..+-...+.++.+.|+......+.+
T Consensus 158 ~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~ 230 (280)
T PRK09687 158 EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIK 230 (280)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHH
Confidence 455565555554 234444444444554432 13345555555543 3566666777777777777443334444
Q ss_pred hCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 404 KMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 404 ~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
.+. .++ .....+.++...|+. +|...+..+.+.+|+
T Consensus 231 ~L~--~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 231 ELK--KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred HHc--CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 433 233 234566777777774 688888888776664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.48 E-value=2.5 Score=33.72 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=55.8
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchh-HhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHY-SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 432 (510)
...++.+.+..++..+.- +.|..... ..-...+.+.|+|.+|..+|+++.+..|....-..|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 455677777777777753 34533222 22334456778888888888877755665555556666555443222222
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHH
Q 046354 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (510)
...+++++..++ +.+ ..++..+....+...|.
T Consensus 98 ~~A~evle~~~d-~~a-~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 98 RYADEVLESGAD-PDA-RALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHhcCCC-hHH-HHHHHHHHHhccccchh
Confidence 333444444443 222 33334444444444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.11 Score=29.53 Aligned_cols=26 Identities=8% Similarity=0.126 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 448 AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.42 E-value=4.5 Score=38.59 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=39.1
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCCc---HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHERD---HVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
..+..++-+.|+.++|++.++++.+..|. ..+...|+.++...+.+.++..++.+.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555666778888888888777644342 2356677777778888888887777764
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.40 E-value=7.2 Score=41.37 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=77.6
Q ss_pred CChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHH----hcCCcchhhHHHHH
Q 046354 72 GRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCA----HNGLIAKLEVISWT 147 (510)
Q Consensus 72 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~ 147 (510)
++++.|+.-+..+- ...|.-.++.--++|.+..|+.++. |+...+.....+|+ ....+++
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~------~~~e~~k~i~~~ya~hL~~~~~~~~------- 957 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYK------PDSEKQKVIYEAYADHLREELMSDE------- 957 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheec------cCHHHHHHHHHHHHHHHHHhccccH-------
Confidence 45566655554443 3344445555556677777766654 66666655554443 3333333
Q ss_pred HHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhh---HHHHHHHHHhcCChHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWT---WNAMIDRYARNGPEGAA 224 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A 224 (510)
.+-+|.+.|+.++|. .+|..+|+|.+|+.+..++..+-... -..|+.-+...+++-+|
T Consensus 958 -Aal~Ye~~GklekAl------------------~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 958 -AALMYERCGKLEKAL------------------KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred -HHHHHHHhccHHHHH------------------HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhH
Confidence 345566666666654 45667789999999888887643332 26677778888888888
Q ss_pred HHHHHHHH
Q 046354 225 MKLLNLMF 232 (510)
Q Consensus 225 ~~~~~~m~ 232 (510)
-++..+-.
T Consensus 1019 a~il~e~~ 1026 (1265)
T KOG1920|consen 1019 AKILLEYL 1026 (1265)
T ss_pred HHHHHHHh
Confidence 87777663
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.32 E-value=11 Score=38.58 Aligned_cols=53 Identities=8% Similarity=0.048 Sum_probs=37.8
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
++..+....+.+.+..+.+..- +-++..|..++..+.+.+..+.-.+...+++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g--~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG--KEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC--ccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 4556667777777777777766 3367788888888888887766666666655
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.74 Score=37.81 Aligned_cols=84 Identities=17% Similarity=0.051 Sum_probs=48.7
Q ss_pred hhcCChHHHHHHHhhCCCCCCc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 390 RRAGQVKEAMRVVSKMPPHERD------HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
.+.|++++|..-|....+..|. ...|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+...++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 3456666666666555544332 2233334445556666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHH
Q 046354 464 EFAQVRKKME 473 (510)
Q Consensus 464 ~A~~~~~~~~ 473 (510)
+|+.-|+++.
T Consensus 186 ealeDyKki~ 195 (271)
T KOG4234|consen 186 EALEDYKKIL 195 (271)
T ss_pred HHHHHHHHHH
Confidence 6666665554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.5 Score=35.74 Aligned_cols=90 Identities=21% Similarity=0.109 Sum_probs=47.9
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CC-cHH---HHHHHHHHHHhhCC
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ER-DHV---VLGALLGACRLHGD 427 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p-~~~---~~~~l~~~~~~~~~ 427 (510)
.+..|+.+.|++.|.+.... .+-.+..||.-..++.-+|+.++|.+-+++..+. .| ... .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34455666666666555531 2234555566666666666666666555555433 11 111 22222334566677
Q ss_pred HHHHHHHHHHHHhcCCC
Q 046354 428 VRMADYIGERLIELQPS 444 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~ 444 (510)
-+.|..-|+.+-++...
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 77777777776655443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.24 E-value=10 Score=38.27 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=40.7
Q ss_pred HHHHHHhcCChhhHHHHHHhhccC-----ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCc
Q 046354 64 MIDGYVKAGRVDEARKVFDEIYEG-----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLI 138 (510)
Q Consensus 64 li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~ 138 (510)
-++.+.+.+.+++|++..+..... -......+|..+...|++++|-...-.|.. .+..-|...+..+...++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhcccccc
Confidence 345555666666666666555331 123455566666666666666666666655 4555555555555444444
Q ss_pred c
Q 046354 139 A 139 (510)
Q Consensus 139 ~ 139 (510)
.
T Consensus 440 ~ 440 (846)
T KOG2066|consen 440 T 440 (846)
T ss_pred c
Confidence 3
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.22 E-value=5.2 Score=37.44 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=49.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQR-------NVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
....+|..++..+.+.|+++.|...+..+... .+...-.-+..+-..|+..+|...+++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567888889999999999999888887751 3455556677788889999999988888763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.63 Score=41.08 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=29.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++..+...|+++.+...+++.+..+|-+...|..+..+|.+.|+...|+..|+.+.
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3344444444555555555555555555554455555555555555555555555444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.78 Score=36.49 Aligned_cols=83 Identities=22% Similarity=0.096 Sum_probs=54.1
Q ss_pred chhHhHHhHH---hhcCChHHHHHHHhhCCCCCCcHHHHHHH-HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 380 EHYSCLADIL---RRAGQVKEAMRVVSKMPPHERDHVVLGAL-LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 380 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
.+.+.|++.+ .+.++.+++..++..+.-..|.......+ ..-+...|++.+|.++++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555544 45678888888887776566755543333 3345677888888888888777777766556666666
Q ss_pred HHHcCCC
Q 046354 456 HAARGEW 462 (510)
Q Consensus 456 ~~~~g~~ 462 (510)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 6666653
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.53 Score=39.84 Aligned_cols=82 Identities=11% Similarity=-0.018 Sum_probs=58.4
Q ss_pred cCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 392 AGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
..+++.|+..+.+.....|+.. -|..=+..+.+.++++.+..--.+++++.|+.......++........+++|+..+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3456666666666665667553 445556666677778888877788888888877777778888777888888888777
Q ss_pred HHH
Q 046354 471 KME 473 (510)
Q Consensus 471 ~~~ 473 (510)
+..
T Consensus 103 ra~ 105 (284)
T KOG4642|consen 103 RAY 105 (284)
T ss_pred HHH
Confidence 774
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.46 E-value=7.2 Score=35.30 Aligned_cols=159 Identities=11% Similarity=0.140 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcC--cCC----cHHHHHHHHHHHHHhhCCCC--CcchhHhHHhHHhhcCCh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCS--HAG----LVEKGRKTFNLMSRAYGFKP--RAEHYSCLADILRRAGQV 395 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g----~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 395 (510)
+++.+.+++.|++.|++-+..+|.+...... ... ....|..+++.|++.+.+-- +...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 4456678899999999988877766333222 222 34578999999998754432 23333333322 33333
Q ss_pred ----HHHHHHHhhCCCC---CCcH-HHHHHHHHHHHhhCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh-H
Q 046354 396 ----KEAMRVVSKMPPH---ERDH-VVLGALLGACRLHGD--VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD-E 464 (510)
Q Consensus 396 ----~~A~~~~~~~~~~---~p~~-~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~ 464 (510)
+.++.+|+.+.+. +.|. .....++..+-...+ ..++..+++.+.+.+-.--..+....-+++-.+..+ +
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 4455566655542 2233 333333333322222 457778888777554332223333334444444444 7
Q ss_pred HHHHHHHHHHhhccccceeE
Q 046354 465 FAQVRKKMERRVKKVASFSQ 484 (510)
Q Consensus 465 A~~~~~~~~~~~~~~p~~~~ 484 (510)
...-+..+.......|++.|
T Consensus 236 ~~~~i~ev~~~L~~~k~~~~ 255 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQKGFGW 255 (297)
T ss_pred HHHHHHHHHHHHhhCcccCh
Confidence 77777777766667776654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.39 Score=26.33 Aligned_cols=27 Identities=30% Similarity=0.171 Sum_probs=15.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444455556666666666666655554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.9 Score=34.61 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=83.1
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCch-hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH-----HhHHhh
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEI-TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL-----ADILRR 391 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~ 391 (510)
+++.++.++|+.-|..+.+.|...=+. .-..........|+...|...|+++-.. .|.|....-+ ...+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 567788999999999999877532221 1111223456889999999999999865 3444433222 234567
Q ss_pred cCChHHHHHHHhhCCCC-CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 046354 392 AGQVKEAMRVVSKMPPH-ER-DHVVLGALLGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
.|.++....-++.+... +| ....-..|.-+-.+.|++..|.+.|..+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88899888888776533 34 344556777777889999999999998874
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.96 Score=35.34 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=36.8
Q ss_pred hcCChHHHHHHHhhCCCCCCcHHHHHHH-HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 391 RAGQVKEAMRVVSKMPPHERDHVVLGAL-LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
..++++++..++..+.-..|+......+ ..-+...|++.+|.+++++..+..+..+..-..++.++...|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3566666666666655444533322222 2234556666677666666655544444334444444444444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=91.99 E-value=8.4 Score=34.16 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=64.5
Q ss_pred HHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 046354 108 GRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDA 187 (510)
Q Consensus 108 A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 187 (510)
-.+++..+....|...++..-.-.+.+.+.....++.....+...+.+.|++..|+.-|-....++...+..++..+...
T Consensus 55 l~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~ 134 (260)
T PF04190_consen 55 LIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK 134 (260)
T ss_dssp HHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 33444444443455555554444455667777778888888888888888888888877766555555554455555555
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 188 GNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 188 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
|...++ +...-.+++ -|...++...|...+....+
T Consensus 135 ~~~~e~----------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 135 GYPSEA----------DLFIARAVL-QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp TSS--H----------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred cCCcch----------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 544433 222222333 35567778888877766644
|
; PDB: 3LKU_E 2WPV_G. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.69 E-value=9.7 Score=34.25 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=59.0
Q ss_pred HcCCChHHHHHHHHhcccc--CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcC-chHHHHHHHhhCC------
Q 046354 100 FKARQVDEGRRLFDRMPLK--LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNA-MTKLAREYFVQMP------ 170 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~------ 170 (510)
.+.|+++.|..++.+.... ..++.....+.+.| |+.-.. ....+ +++.|..++++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~-------------yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~ 69 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC-------------YNIGKS-LLSKKDKYEEAVKWLQRAYDILEKP 69 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH-------------HHHHHH-HHHcCCChHHHHHHHHHHHHHHHhh
Confidence 4678888888888887664 12222222222222 222222 23333 5555555444322
Q ss_pred ------CCCh-----hHHHHHHHHHHhcCCHH---HHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 171 ------NKDI-----VAWNAMITAYVDAGNMA---QASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 171 ------~~~~-----~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.++. .+...++.+|...+..+ +|.++++.+.. |+ +.++-.-+..+.+.++.+.+.+.+..|..
T Consensus 70 ~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 70 GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 1222 24455556666655533 34444444433 33 33444445555556666666666666654
Q ss_pred C
Q 046354 234 S 234 (510)
Q Consensus 234 ~ 234 (510)
.
T Consensus 150 ~ 150 (278)
T PF08631_consen 150 S 150 (278)
T ss_pred h
Confidence 3
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.11 Score=29.08 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=14.9
Q ss_pred CCC-cHHHHHHHHHHHHhhCCHHHHH
Q 046354 408 HER-DHVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 408 ~~p-~~~~~~~l~~~~~~~~~~~~A~ 432 (510)
..| +...|..+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344 4556666666666666666654
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.3 Score=39.18 Aligned_cols=69 Identities=12% Similarity=-0.031 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccce
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASF 482 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 482 (510)
..+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++......+..|..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 346666778889999999999999999999998888888899999999999999888777666665543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.44 E-value=2.8 Score=34.64 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch--hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-Cc------c
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI--TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RA------E 380 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~------~ 380 (510)
.+..+...|++.|+.++|++.|.++.+....|... .+-.+|+.....+++..+.....++... --.+ +. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~-~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL-IEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhccchHHHHHHHH
Confidence 57778888999999999999999988865444433 4566777777888888888888777654 1121 11 1
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
+|..+ .+...|++..|.+.|-...
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 12222 2345678888887776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.3 Score=27.13 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHhccccCCC
Q 046354 26 VSCASMITVFLRNHDLPKAEALFRAMPESQRN 57 (510)
Q Consensus 26 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~ 57 (510)
.+|..+...+...|++++|+..|++..+..|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.68 Score=41.37 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=59.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCC-CchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC
Q 046354 316 LAYSNHGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ 394 (510)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (510)
.-|.++|++++|+..|..-... .| |.+++..-..+|.+...+..|..-....... . ..-...|+.-+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHhh
Confidence 4578888899999988877663 45 8888888888888888887776655554432 0 0012222222223333566
Q ss_pred hHHHHHHHhhCCCCCCcHH
Q 046354 395 VKEAMRVVSKMPPHERDHV 413 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~ 413 (510)
..+|.+-++...++.|+..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 7777777777776777643
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.19 E-value=8.7 Score=32.77 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCchh
Q 046354 426 GDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.|.-.+...+++..+++|.-..+
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccccc
Confidence 55566666666666666654433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.17 E-value=18 Score=36.46 Aligned_cols=322 Identities=10% Similarity=0.027 Sum_probs=163.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccccCCC---hhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhh
Q 046354 92 WTSLISGYFKARQVDEGRRLFDRMPLKLKN---VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168 (510)
Q Consensus 92 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~ 168 (510)
-..+|.-+...+.+..|+++-+.+.. |. ...+.....-+.+..+. .+.+.+..+-++
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~--p~~~~~~Vl~~Wa~~kI~~~d~------------------~d~~vld~I~~k 499 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNL--PESQGDRVLLEWARRKIKQSDK------------------MDEEVLDKIDEK 499 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCC--ccccccHHHHHHHHHHHhccCc------------------cchHHHHHHHHH
Confidence 44567777888888888888888876 44 33333333333333221 122333333344
Q ss_pred CCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 046354 169 MPN--KDIVAWNAMITAYVDAGNMAQASELFNLMPQ--------RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMP 238 (510)
Q Consensus 169 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 238 (510)
+.. ....+|..+...-...|+.+-|..+++.=+. -+..-+...+.-+...|+.+-...++-.+.++ -
T Consensus 500 ls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~ 576 (829)
T KOG2280|consen 500 LSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---L 576 (829)
T ss_pred hcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---H
Confidence 433 4456788888888889999999998876554 13334566677777788888877777666542 1
Q ss_pred CHhhHHHHHHHhhhhhhhhHHHHHHHH-hCCCcchhhhhhhhhhccccccccccChhhHHHHh--cccC-----CCChhh
Q 046354 239 NETTCTSILTSCEGMLENMLAHALAIR-LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF--ERLE-----AKDVVS 310 (510)
Q Consensus 239 ~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~--~~~~-----~~~~~~ 310 (510)
+...+...+.. ......++....+ .+-..- -.. ...++...+...| +... .+-...
T Consensus 577 ~~s~l~~~l~~---~p~a~~lY~~~~r~~~~~~l-------~d~------y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~ 640 (829)
T KOG2280|consen 577 NRSSLFMTLRN---QPLALSLYRQFMRHQDRATL-------YDF------YNQDDNHQALASFHLQASYAAETIEGRIPA 640 (829)
T ss_pred HHHHHHHHHHh---chhhhHHHHHHHHhhchhhh-------hhh------hhcccchhhhhhhhhhhhhhhhhhcccchh
Confidence 11222222210 0111111111111 000000 000 1111111111111 1100 011112
Q ss_pred HHHHHHHHHhcCChh----------hHHHHHHHHHH-cCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc
Q 046354 311 WTAMILAYSNHGHGF----------QVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~----------~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (510)
.......+.+..... +-+++.+.+.. .|..-...+.+--+.-+...|+-.+|.++-.+.+ -||.
T Consensus 641 lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdK 715 (829)
T KOG2280|consen 641 LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDK 715 (829)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----Ccch
Confidence 223334444433211 11122222221 2333444455555556666677777766554442 4666
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (510)
..|..-+.++...++|++-+++-+... . +.-|.-+..+|.+.|+..+|.+.+.+.- +. .....+|.+.
T Consensus 716 r~~wLk~~aLa~~~kweeLekfAkskk--s--PIGy~PFVe~c~~~~n~~EA~KYiprv~----~l----~ekv~ay~~~ 783 (829)
T KOG2280|consen 716 RLWWLKLTALADIKKWEELEKFAKSKK--S--PIGYLPFVEACLKQGNKDEAKKYIPRVG----GL----QEKVKAYLRV 783 (829)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHhccC--C--CCCchhHHHHHHhcccHHHHhhhhhccC----Ch----HHHHHHHHHh
Confidence 777767777777777777777666655 2 3445556677777777777777766531 11 1566677777
Q ss_pred CCChHHHHHH
Q 046354 460 GEWDEFAQVR 469 (510)
Q Consensus 460 g~~~~A~~~~ 469 (510)
|++.+|..+-
T Consensus 784 ~~~~eAad~A 793 (829)
T KOG2280|consen 784 GDVKEAADLA 793 (829)
T ss_pred ccHHHHHHHH
Confidence 7777776653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.64 Score=38.72 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=77.2
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRM 430 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 430 (510)
|-..|-...|.--|.... .+.|+ +.+||.|.--+...|+++.|.+.|+...+.+|. ..+...-.-++.-.|+++-
T Consensus 75 YDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 566777777777777666 45665 677888888888999999999999999877773 3343333334455689999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHH--cCCChHHHHHHH
Q 046354 431 ADYIGERLIELQPSSSGAYVLSANVHAA--RGEWDEFAQVRK 470 (510)
Q Consensus 431 A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~ 470 (510)
|.+-+.+--.-+|++| |. ..+.|.. .-+..+|..-+.
T Consensus 152 Aq~d~~~fYQ~D~~DP--fR-~LWLYl~E~k~dP~~A~tnL~ 190 (297)
T COG4785 152 AQDDLLAFYQDDPNDP--FR-SLWLYLNEQKLDPKQAKTNLK 190 (297)
T ss_pred hHHHHHHHHhcCCCCh--HH-HHHHHHHHhhCCHHHHHHHHH
Confidence 9998888888888876 22 2344443 334555654443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.35 Score=25.02 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHH
Q 046354 447 GAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777888887777765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.45 E-value=7.7 Score=33.08 Aligned_cols=149 Identities=17% Similarity=0.079 Sum_probs=72.0
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH----HcCCCCCc-hhHHHHHHhcCcCCcHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML----KSGTKPDE-ITFVGVLSDCSHAGLVEKG 362 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p~~-~~~~~li~~~~~~g~~~~a 362 (510)
+-.+.+++|-++|.+... +|--..++..|-..|.+.- +.|-+-|. .+|.....+| +.+++++|
T Consensus 25 gg~~k~eeAadl~~~Aan-----------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eA 92 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAAN-----------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEA 92 (288)
T ss_pred CCCcchHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHH
Confidence 445678888888765532 2222222232222222221 12222222 2343333333 33466666
Q ss_pred HHHHHHHHHhh----CCCCCcchhHhHHhHHhhc-CChHHHHHHHhhCCCC----CCcH---HHHHHHHHHHHhhCCHHH
Q 046354 363 RKTFNLMSRAY----GFKPRAEHYSCLADILRRA-GQVKEAMRVVSKMPPH----ERDH---VVLGALLGACRLHGDVRM 430 (510)
Q Consensus 363 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~p~~---~~~~~l~~~~~~~~~~~~ 430 (510)
.+.++...+-+ .+..-....-.+.+.|... .+++.|+..|+..-+. ..+. .++.-....-...+++.+
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~ 172 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSK 172 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 65555444321 1111122223455555443 5666666666554321 1222 233333333456799999
Q ss_pred HHHHHHHHHhcCCCCchh
Q 046354 431 ADYIGERLIELQPSSSGA 448 (510)
Q Consensus 431 A~~~~~~~~~~~p~~~~~ 448 (510)
|+.+|+++....-+++-.
T Consensus 173 Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 173 AIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHhccchHH
Confidence 999999998666665443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.41 E-value=23 Score=36.22 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=61.1
Q ss_pred CCCChHHHHHHHhhcC----CCCh-----hhHHHHHHHHHhcCChhhHHHHHHhccccC---C-Ch--hHHHHH-HHHHH
Q 046354 6 CTGKVKEATKLFDEMS----QPDP-----VSCASMITVFLRNHDLPKAEALFRAMPESQ---R-NI--VAESAM-IDGYV 69 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~----~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---p-~~--~~~~~l-i~~~~ 69 (510)
...+++.|+..+++.. +++. .....++..+.+.+... |...+++..+.- + .. ..+..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4567888888888774 2222 12334566666666555 888888866541 1 11 222222 23333
Q ss_pred hcCChhhHHHHHHhhcc-------CChhhHHHHHHHHH--cCCChHHHHHHHHhc
Q 046354 70 KAGRVDEARKVFDEIYE-------GNVYSWTSLISGYF--KARQVDEGRRLFDRM 115 (510)
Q Consensus 70 ~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~g~~~~A~~~~~~m 115 (510)
..+++..|.+.++.+.. +...++-.++.+.. +.+..+.+.+.++++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 34789989998888833 22233444444433 455566666666655
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.40 E-value=1.8 Score=38.30 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhhccC---ChhhHHHHHHHHHcCCChHHHHHHHHhcccc-------CCChhhHHHHH
Q 046354 60 AESAMIDGYVKAGRVDEARKVFDEIYEG---NVYSWTSLISGYFKARQVDEGRRLFDRMPLK-------LKNVVSWTTVV 129 (510)
Q Consensus 60 ~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~ll 129 (510)
++..++..+...|+.+.+.+.++.+.+. +...|..+|.+|.+.|+...|++.|+++.+. .|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4445666666666666666666666442 3455666666666666666666666666552 44444444444
Q ss_pred HH
Q 046354 130 LG 131 (510)
Q Consensus 130 ~~ 131 (510)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.022 Score=45.35 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHHHHhcCChhhHHHHHHhccccC--CChhHHHHHHHHHHhcCChhhHHHHHH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQ--RNIVAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
++.+.+.+.+.....+++.+.... .+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 444444555555555555554322 234445555555555555555555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.18 E-value=7.7 Score=30.50 Aligned_cols=95 Identities=9% Similarity=-0.022 Sum_probs=55.3
Q ss_pred HhcCchHHHHHHHhhCC--CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhhHHHHHHHHHhcCChHHHHH-HH
Q 046354 154 ERNAMTKLAREYFVQMP--NKD-IVAWNAMITAYVDAGNMAQASELFNLMPQRN-VWTWNAMIDRYARNGPEGAAMK-LL 228 (510)
Q Consensus 154 ~~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~-~~ 228 (510)
...++++.+..+++.+. .|+ ...-..-...+...|++++|.++|+++.+.. ...|..-+.++|-.-.-|-..+ .-
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A 100 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHA 100 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHH
Confidence 44778888888887776 333 3333334556789999999999999998733 3344444444443322222222 23
Q ss_pred HHHHHCCCCCCHhhHHHHHH
Q 046354 229 NLMFQSRFMPNETTCTSILT 248 (510)
Q Consensus 229 ~~m~~~g~~p~~~~~~~ll~ 248 (510)
.++...|-.|+.......+.
T Consensus 101 ~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 101 DEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHhCCCHhHHHHHHHHh
Confidence 34455556666555444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.47 Score=26.25 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHhccccCCC
Q 046354 27 SCASMITVFLRNHDLPKAEALFRAMPESQRN 57 (510)
Q Consensus 27 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~ 57 (510)
.|..+...+.+.|++++|++.|++..+..|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666677777777777777776665553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.07 E-value=8.9 Score=31.02 Aligned_cols=25 Identities=4% Similarity=-0.072 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 449 YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
-..|+-+-.+.|++.+|.+.|+.+.
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHH
Confidence 3344444445555555555555443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.02 E-value=1.6 Score=27.38 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=27.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
-.+..++.+.|++++|.+..+.+++.+|++..+-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3466778999999999999999999999997553
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.96 E-value=10 Score=31.44 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=58.5
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchh-----HhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY-----SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL 424 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 424 (510)
...+...|+++.|..-++..... |....+ -.|.+.....|.+++|...++...+..-.......-...+..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 34566778888888877766542 222222 235556677888888888887776222133334444566777
Q ss_pred hCCHHHHHHHHHHHHhcCCCC
Q 046354 425 HGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.|+-++|...|++.++..+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 888888888888888666443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.85 Score=36.95 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC----CChHHHHHHHHHH
Q 046354 428 VRMADYIGERLIELQPSSSGAYVLSANVHAARG----EWDEFAQVRKKME 473 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~ 473 (510)
+++|+.-|++++.++|+...++..++++|...| +..+|..+|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 455666666666777777777777777766544 3334445554444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.82 Score=26.69 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+++.|...|...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.51 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 448 AYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
++..++.++.+.|++++|.+.|+++....|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 467789999999999999999998875443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.38 E-value=27 Score=35.61 Aligned_cols=36 Identities=14% Similarity=0.012 Sum_probs=20.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 046354 213 DRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250 (510)
Q Consensus 213 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 250 (510)
..+.-.|+++.|.+.+-. ..+...+.+.+...+..+
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~ 301 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY 301 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc
Confidence 344557788888777766 334566666776666644
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.25 E-value=15 Score=32.52 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+++.....|..+|.+.+|.++-++++.++|-+...+..|...|...|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455567789999999999999999999999999999999999999999999999998873
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.22 Score=46.53 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=69.0
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchh-HhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhCC
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY-SCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGD 427 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 427 (510)
+..+...++++.|..++.++.+ +.|+-..| ..=..++.+.+++..|..=..+.++..|. ...|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4445667788888888888875 36644433 33346778888888888877777766663 3355555667777788
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHH
Q 046354 428 VRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
+.+|...|+......|+++..-..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHH
Confidence 888888888888888887654433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.15 E-value=16 Score=32.79 Aligned_cols=85 Identities=9% Similarity=-0.052 Sum_probs=38.6
Q ss_pred HHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcC-CHHHHHHH-HhhCCCCChhhHHHHHHHHHhcCChHHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAG-NMAQASEL-FNLMPQRNVWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 225 (510)
..+.++.+.++.+....+...+..+|..+-...+.++.+.+ +...+... ...+..+|..+-...+.++.+.|+ ..|.
T Consensus 147 ~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av 225 (280)
T PRK09687 147 AVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVL 225 (280)
T ss_pred HHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHH
Confidence 33444444444333333333333455555444455554432 12233333 333334566666666666666665 3444
Q ss_pred HHHHHHHH
Q 046354 226 KLLNLMFQ 233 (510)
Q Consensus 226 ~~~~~m~~ 233 (510)
..+-+..+
T Consensus 226 ~~Li~~L~ 233 (280)
T PRK09687 226 SVLIKELK 233 (280)
T ss_pred HHHHHHHc
Confidence 44444444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.03 E-value=1.6 Score=31.13 Aligned_cols=62 Identities=13% Similarity=0.278 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
.=++.+-++.+....+-|++....+.+++|.+.+|+..|.++++..+.+.+ .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 335566667777777888888888888888888888888888888775422 23445555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.94 E-value=6.5 Score=32.46 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhhccCC------hhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 60 AESAMIDGYVKAGRVDEARKVFDEIYEGN------VYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 60 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
.+..+...|++.|+.+.|.+.+.++.+.. ...+-.+|+.....+++..+...+.+....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45566677777777777777777775432 234666777777777777777777666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.84 E-value=31 Score=35.52 Aligned_cols=164 Identities=8% Similarity=0.006 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhhccCCh---hhHHHHHHHHHcCCChHHHHHHHHhcccc---------CCChhh---H
Q 046354 61 ESAMIDGYVKAGRVDEARKVFDEIYEGNV---YSWTSLISGYFKARQVDEGRRLFDRMPLK---------LKNVVS---W 125 (510)
Q Consensus 61 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~---~ 125 (510)
...-+..+.+...++.|..+.+.-.-+.. .........+-+.|++++|...|-+-... -+|... .
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHH
Confidence 34455666666777777766655422111 12223334455677777777776655443 223222 2
Q ss_pred HHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 046354 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDI-VAWNAMITAYVDAGNMAQASELFNLMPQRN 204 (510)
Q Consensus 126 ~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 204 (510)
...+..+.+.| .|+...-..|+.+|.+.++.+...++.+....... .-....+..+.+.+-.++|..+-..... +
T Consensus 417 t~YLe~L~~~g---la~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-h 492 (933)
T KOG2114|consen 417 TSYLEALHKKG---LANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-H 492 (933)
T ss_pred HHHHHHHHHcc---cccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-C
Confidence 23333333333 33455666778888888888887777776541111 1234455666666767777666555543 3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLM 231 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m 231 (510)
......+ +-..+++++|++++..+
T Consensus 493 e~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 493 EWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 3333333 34567888888888776
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.54 E-value=13 Score=30.99 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=52.9
Q ss_pred hHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHcCC
Q 046354 387 DILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPS----SSGAYVLSANVHAARGE 461 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~ 461 (510)
..+.+.|+ +.|.+.|-.+... ..+....-..+..|....|.+++..++-+++++.+. ++..+..|+.++.+.|+
T Consensus 115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 115 YHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 44566666 4555555554422 223333333444444567899999999999966543 46779999999999999
Q ss_pred ChHHH
Q 046354 462 WDEFA 466 (510)
Q Consensus 462 ~~~A~ 466 (510)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=88.47 E-value=1.1 Score=23.78 Aligned_cols=30 Identities=33% Similarity=0.215 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 415 LGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
|..+...+...|+++.|...+++.++..|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555555556666666666665555443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.35 E-value=34 Score=35.48 Aligned_cols=225 Identities=16% Similarity=0.038 Sum_probs=117.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChh
Q 046354 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294 (510)
Q Consensus 215 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 294 (510)
.....++++|..+..++...=..|+..--..+......+.. .+. ...|+++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a----------------------~va-------l~~~~~e 475 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRA----------------------QVA-------LNRGDPE 475 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHH----------------------HHH-------HhcCCHH
Confidence 45578899999988887654333333222222221111100 000 4456777
Q ss_pred hHHHHhcccCC--------CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH---HH--HhcCcCCcHH-
Q 046354 295 SARLAFERLEA--------KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG---VL--SDCSHAGLVE- 360 (510)
Q Consensus 295 ~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li--~~~~~~g~~~- 360 (510)
.|.++-+...+ ..+..+..+..+..-.|++++|..+.++..+.--.-+...+.. +. ..+...|...
T Consensus 476 ~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~ 555 (894)
T COG2909 476 EAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVAR 555 (894)
T ss_pred HHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 76665554433 3556788888888899999999999887766422333333322 22 1234556332
Q ss_pred -HHHHHHHHHHHhhCCCCC-----cchhHhHHhHHhhcCChHHHHHHHhhC----CCCCCcHH----HHHHHHHHHHhhC
Q 046354 361 -KGRKTFNLMSRAYGFKPR-----AEHYSCLADILRRAGQVKEAMRVVSKM----PPHERDHV----VLGALLGACRLHG 426 (510)
Q Consensus 361 -~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~p~~~----~~~~l~~~~~~~~ 426 (510)
.....+......+..... ..++..+..++.+ ++.+..-.... ....|... .+..|+......|
T Consensus 556 a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~G 632 (894)
T COG2909 556 AEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRG 632 (894)
T ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcC
Confidence 233333333332111111 2233444444444 44443332222 22233222 2235667778889
Q ss_pred CHHHHHHHHHHHHhcCCCC--chhHHHHH-----HHHHHcCCChHHHHHHHH
Q 046354 427 DVRMADYIGERLIELQPSS--SGAYVLSA-----NVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~~--~~~~~~l~-----~~~~~~g~~~~A~~~~~~ 471 (510)
+.++|.....++..+..++ ...|...+ ......|+.+.|.....+
T Consensus 633 dl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 633 DLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 9999999999988443332 22222222 224557888777766654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.66 E-value=14 Score=30.06 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
.+..+++.+...|++-+|+++.+..... +......++.+..+.+|...-..+++-...
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566677888889988888887764322 222233455555555665554444444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.33 E-value=2.3 Score=37.70 Aligned_cols=97 Identities=9% Similarity=0.145 Sum_probs=68.7
Q ss_pred CCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-C------C--hhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046354 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-K------D--VVSWTAMILAYSNHGHGFQVFRLFARMLKS 337 (510)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-~------~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 337 (510)
|.+.+......++... ....++++++..+-++.. + + ..+|-.++ -.-++++++.++..=++.
T Consensus 59 g~~~s~~~Vd~~V~v~-----~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqY 129 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVI-----SSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQY 129 (418)
T ss_pred CCCcceeehhhhhhcc-----ccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchh
Confidence 3344444444444444 567788888887777664 2 1 22333332 234678999999999999
Q ss_pred CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 338 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
|+-||.++++.+++.+.+.+++.+|.++.-.+...
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887776654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.32 E-value=0.42 Score=42.73 Aligned_cols=117 Identities=15% Similarity=0.042 Sum_probs=62.7
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~ 432 (510)
...|.++.|++.|...+.. -++....|..-..++.+.++...|++-+....++.||.. .|-.-..+....|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 3456666666666665542 233444455555566666666666666666655555433 3322233334456666666
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..+..+.+++-+. ..-..+-.+.-..+..++-...+++.+
T Consensus 203 ~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHH
Confidence 6666666554432 333444445555555555555555554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.09 E-value=3.9 Score=39.80 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=86.9
Q ss_pred CCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc
Q 046354 7 TGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE 86 (510)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 86 (510)
+|+++.|-.++..+++ ..-+.++..+-++|..++|+++- +|+. .-.....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d---~rFelal~lgrl~iA~~la~e~-- 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPD---QRFELALKLGRLDIAFDLAVEA-- 663 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChh---hhhhhhhhcCcHHHHHHHHHhh--
Confidence 3444445444444332 23344555566667666666542 2221 1233445678888887765543
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHH
Q 046354 87 GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYF 166 (510)
Q Consensus 87 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~ 166 (510)
.+..-|..|.++....|++..|.+.|.+..+ |..|+-.+...|+.+. ...+.....+.|.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~-----l~~la~~~~~~g~-------- 723 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEG-----LAVLASLAKKQGK-------- 723 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhH-----HHHHHHHHHhhcc--------
Confidence 3456688999999999999999999988765 3444444444443321 2222222222222
Q ss_pred hhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 046354 167 VQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ 202 (510)
Q Consensus 167 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 202 (510)
.|.--.+|...|+++++.+++..-.+
T Consensus 724 ----------~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 724 ----------NNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred ----------cchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 12233467788999999998877654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.81 E-value=1.7 Score=31.39 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
+..+-++.+....+-|++....+.+++|.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4556666666677888888888888888888888888888888877523 33336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.73 E-value=34 Score=33.69 Aligned_cols=178 Identities=12% Similarity=0.067 Sum_probs=95.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHhhHHHHH
Q 046354 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQRN---VWTWNAMIDRYARNGPEGAAMKLLNLMFQSR--FMPNETTCTSIL 247 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll 247 (510)
+..+|...+..-...|+.+.+.-+|+...-|- ...|--.+.-....|+.+-|..++....+-- -.|..+.+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34566666777777777777777777766532 2334444444444566666666655544322 223333333333
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CChh-hHHHHHHHHHhcCCh
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVV-SWTAMILAYSNHGHG 324 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~ 324 (510)
. -..|+++.|..+++.+.+ |+.. .-..-+....+.|+.
T Consensus 376 ~---------------------------------------e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 376 E---------------------------------------ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred H---------------------------------------HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 3 335677777777777765 3322 222223445566776
Q ss_pred hhHH---HHHHHHHHcCCCCCchhHHHHHHh-----cCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC
Q 046354 325 FQVF---RLFARMLKSGTKPDEITFVGVLSD-----CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393 (510)
Q Consensus 325 ~~A~---~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (510)
+.+. .++..... | +-+..+...+.-- +.-.++.+.|..++..+.+ ..+++...|..+++...-.+
T Consensus 417 ~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 417 EDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 6666 33322222 1 1222222222211 2234677788888888776 46667777777777665544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.65 E-value=9.5 Score=36.18 Aligned_cols=117 Identities=13% Similarity=0.040 Sum_probs=70.2
Q ss_pred cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADY 433 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~ 433 (510)
..|+.-.|-+-+....+. .+.++.........+...|+++.+...+...... .....+..+++....+.|++..|..
T Consensus 301 ~~gd~~aas~~~~~~lr~--~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN--QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHh--CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 446665555544444442 2334444444445556677777777776655432 4455566677777777777777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 434 IGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..+-|+..+-.++......+-.-...|-++++...++++.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 7777775555555554444444555667777777777665
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.44 E-value=10 Score=27.40 Aligned_cols=57 Identities=28% Similarity=0.244 Sum_probs=39.1
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
.+.|++++|..+.+...-||...|-++.. .+.|-.+++..-+.+|...| .|....|.
T Consensus 50 mNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 50 MNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 67788888888888887788877776644 34566666666677777766 45544443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.72 E-value=19 Score=29.86 Aligned_cols=87 Identities=8% Similarity=-0.007 Sum_probs=64.4
Q ss_pred HHHHHHhcCchHHHHHHHhhCC-CCChhHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCC--hhhHHHHHHHHHhcCC
Q 046354 149 MCTGLERNAMTKLAREYFVQMP-NKDIVAWN-----AMITAYVDAGNMAQASELFNLMPQRN--VWTWNAMIDRYARNGP 220 (510)
Q Consensus 149 l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~~ 220 (510)
+...+...++++.|...++... .+....+. .|.+.....|.+|+|+..++....++ ......-.+.+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 4556667777777777777655 33333333 34567888999999999999988764 3335556678999999
Q ss_pred hHHHHHHHHHHHHCC
Q 046354 221 EGAAMKLLNLMFQSR 235 (510)
Q Consensus 221 ~~~A~~~~~~m~~~g 235 (510)
-++|..-|++.++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999998876
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.63 E-value=24 Score=30.88 Aligned_cols=259 Identities=17% Similarity=0.196 Sum_probs=132.6
Q ss_pred cCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---------C
Q 046354 101 KARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---------N 171 (510)
Q Consensus 101 ~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~ 171 (510)
+..++++|+.-|++..+..+...-|. --+...++....+.+++++..+.+.++. .
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG----------------FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG----------------FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH----------------HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 44577888888887776533322221 1123345556666677776666666654 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChh----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhh
Q 046354 172 KDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----RNVW----TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242 (510)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 242 (510)
-+..+.|++++.-....+.+-...+|+.-.+ .|.. |-..|...|...+.+.+..++++++.++.
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC------- 175 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC------- 175 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh-------
Confidence 2344556666555555554444444432211 1221 22345556666666666666666664421
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcC
Q 046354 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322 (510)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (510)
+..+-++-. ++- ..-...|..-|+.|..+.
T Consensus 176 ----------------------------------------------q~edGedD~---kKG-tQLLEiYAlEIQmYT~qK 205 (440)
T KOG1464|consen 176 ----------------------------------------------QTEDGEDDQ---KKG-TQLLEIYALEIQMYTEQK 205 (440)
T ss_pred ----------------------------------------------ccccCchhh---hcc-chhhhhHhhHhhhhhhhc
Confidence 111000000 000 001235666678888887
Q ss_pred ChhhHHHHHHHHHHc-CCCCCchhHHHHHHhc-----CcCCcHHHHHHHHHHHHHhhCCCCCc--c---hhHhHHhHHhh
Q 046354 323 HGFQVFRLFARMLKS-GTKPDEITFVGVLSDC-----SHAGLVEKGRKTFNLMSRAYGFKPRA--E---HYSCLADILRR 391 (510)
Q Consensus 323 ~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~--~---~~~~l~~~~~~ 391 (510)
+-.+...+|++...- .--|.+... .+|+-| .+.|.+++|..-|-++.+.+.-..++ . -|..|+.++.+
T Consensus 206 nNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmk 284 (440)
T KOG1464|consen 206 NNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMK 284 (440)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHH
Confidence 777777778776542 223444433 445554 36788888776555544433222222 2 24455666666
Q ss_pred cCC--hHHHHHHHhhCC--CCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 392 AGQ--VKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 392 ~g~--~~~A~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
.|- ++. ++.. +..|...+...++.+|.. ++..+-++++..-.
T Consensus 285 S~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~ 330 (440)
T KOG1464|consen 285 SGINPFDS-----QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNR 330 (440)
T ss_pred cCCCCCcc-----cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhh
Confidence 552 111 1111 125667788888888865 45555555554433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=85.62 E-value=27 Score=31.44 Aligned_cols=161 Identities=10% Similarity=-0.022 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhcCChh---hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhH
Q 046354 309 VSWTAMILAYSNHGHGF---QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCL 385 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 385 (510)
.+...++.+|...+..+ +|..+++.+... .+-.+..+..-+..+.+.++.+.+.+.+.+|... +......+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHH
Confidence 35677888888877655 455666666543 2222345555566677789999999999999985 33233444444
Q ss_pred HhHH---hhcCChHHHHHHHhhCCCC--CCcHH-HHHHHH----HHHHhhCC------HHHHHHHHHHHHh--cCCCCch
Q 046354 386 ADIL---RRAGQVKEAMRVVSKMPPH--ERDHV-VLGALL----GACRLHGD------VRMADYIGERLIE--LQPSSSG 447 (510)
Q Consensus 386 ~~~~---~~~g~~~~A~~~~~~~~~~--~p~~~-~~~~l~----~~~~~~~~------~~~A~~~~~~~~~--~~p~~~~ 447 (510)
+..+ ... ....|...+..+... .|... ....++ ......++ .+....+++...+ ..|-++.
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 4444 332 234444444433211 33222 111111 11112122 4444444553321 1222222
Q ss_pred h---HHH----HHHHHHHcCCChHHHHHHHHHH
Q 046354 448 A---YVL----SANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 448 ~---~~~----l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+ ... -+..+.+.++|++|...|+...
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 222 2344788999999999998543
|
It is also involved in sporulation []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.38 E-value=47 Score=34.00 Aligned_cols=170 Identities=13% Similarity=0.134 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHHHhhc-------cCChhhHHHHHHHHH-cCCChHHHHHHHHhcccc--CCChhhH
Q 046354 56 RNIVAESAMIDGYVKAGRVDEARKVFDEIY-------EGNVYSWTSLISGYF-KARQVDEGRRLFDRMPLK--LKNVVSW 125 (510)
Q Consensus 56 p~~~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~--~~~~~~~ 125 (510)
.+...|..||.. |.+.++-+. +.+..++-.+...+. ...+++.|+..+++.... .++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~-- 96 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT-- 96 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH--
Confidence 355667777664 333444443 124456667777776 567888888888876543 11111
Q ss_pred HHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC----C----CChhHHHHH-HHHHHhcCCHHHHHHH
Q 046354 126 TTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP----N----KDIVAWNAM-ITAYVDAGNMAQASEL 196 (510)
Q Consensus 126 ~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~----~~~~~~~~l-i~~~~~~g~~~~A~~~ 196 (510)
+.--..-..++..+.+.+... |...+++.. . +-...+..+ +..+...++...|.+.
T Consensus 97 --------------d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~ 161 (608)
T PF10345_consen 97 --------------DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALEN 161 (608)
T ss_pred --------------HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 111111223344454444444 555555544 1 111122222 2222233788888888
Q ss_pred HhhCCC-------CChhhHHHHHHHH--HhcCChHHHHHHHHHHHHCCC---------CCCHhhHHHHHHHhh
Q 046354 197 FNLMPQ-------RNVWTWNAMIDRY--ARNGPEGAAMKLLNLMFQSRF---------MPNETTCTSILTSCE 251 (510)
Q Consensus 197 ~~~~~~-------~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~g~---------~p~~~~~~~ll~~~~ 251 (510)
++.+.. +-..++..++.+. .+.+..+++.+.++.+..... .|...++..++.-+.
T Consensus 162 L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~ 234 (608)
T PF10345_consen 162 LQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCC 234 (608)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHH
Confidence 776653 2233333343333 334556667766666633221 234455555555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.25 E-value=36 Score=32.64 Aligned_cols=418 Identities=11% Similarity=0.042 Sum_probs=210.2
Q ss_pred HHHHHhcC--ChhhHHHHHHhccccCCCh----hHHHHHHHH-HHhcCChhhHHHHHHhhcc-----CC-----hhhHHH
Q 046354 32 ITVFLRNH--DLPKAEALFRAMPESQRNI----VAESAMIDG-YVKAGRVDEARKVFDEIYE-----GN-----VYSWTS 94 (510)
Q Consensus 32 i~~~~~~~--~~~~A~~~~~~~~~~~p~~----~~~~~li~~-~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~ 94 (510)
.+.+..+| +...++++++....-.|.. .+--.|... +.-..+++.|+.-++.... |+ ..++..
T Consensus 14 Ae~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~Sl 93 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASL 93 (629)
T ss_pred HHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHH
Confidence 34444455 5556777777666544421 111122222 2234567777776666511 22 246777
Q ss_pred HHHHHHcCC-ChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-CC
Q 046354 95 LISGYFKAR-QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NK 172 (510)
Q Consensus 95 li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~ 172 (510)
|...|.... .+..|..++.+..+...+...|..-+ ...+++...-..++..|.+++.-.. ..
T Consensus 94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckl----------------lfQLaql~~idkD~~sA~elLavga~sA 157 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKL----------------LFQLAQLHIIDKDFPSALELLAVGAESA 157 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHH----------------HHHHHHHHhhhccchhHHHHHhcccccc
Confidence 777777665 77888888888777533333443211 2234555555667777777765544 12
Q ss_pred C--hhHHHHHHHHH------Hh---cCCHHHHHHHHhhCCC---CChh------hH--HHHHHHHHhcCChHHHHHHHHH
Q 046354 173 D--IVAWNAMITAY------VD---AGNMAQASELFNLMPQ---RNVW------TW--NAMIDRYARNGPEGAAMKLLNL 230 (510)
Q Consensus 173 ~--~~~~~~li~~~------~~---~g~~~~A~~~~~~~~~---~~~~------~~--~~li~~~~~~~~~~~A~~~~~~ 230 (510)
| -..|..++..+ .. ..++..+.....++.+ +|.. .| +.-+.-|...|+...+...+++
T Consensus 158 d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQ 237 (629)
T KOG2300|consen 158 DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQ 237 (629)
T ss_pred chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHH
Confidence 2 22333222211 11 2233444444444443 3321 12 2223345567777777776666
Q ss_pred HHH---CCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhh----hhhhhhhccccccccccC-------hhhH
Q 046354 231 MFQ---SRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL----TYKCTCHYVFWDWGFQLD-------VNSA 296 (510)
Q Consensus 231 m~~---~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~-------~~~a 296 (510)
+++ .+-.|+...=..++.+- ... ...+-|...+ +......- .-.|- -|++
T Consensus 238 LQ~siqtist~~~~h~e~ilgsp-s~~----------l~~wlpkeqicaLV~l~tv~hs-----m~~gy~~~~~K~tDe~ 301 (629)
T KOG2300|consen 238 LQDSIQTISTSSRGHDEKILGSP-SPI----------LFEWLPKEQICALVYLVTVIHS-----MPAGYFKKAQKYTDEA 301 (629)
T ss_pred HHHHHhccCCCCCCccccccCCC-ChH----------HHhhccHhhhHhhhhhhHHhhh-----hhhHHHHHHHHHHHHH
Confidence 654 22222110000000000 000 0000000000 00000000 11222 3344
Q ss_pred HHHhcccCCCC--hhh--------HHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCCch-------hHHHHHHh-cCcCC
Q 046354 297 RLAFERLEAKD--VVS--------WTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEI-------TFVGVLSD-CSHAG 357 (510)
Q Consensus 297 ~~~~~~~~~~~--~~~--------~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-------~~~~li~~-~~~~g 357 (510)
....++.++.+ ... ...++-.=.-.|++.+|++-+..|.+-- -.|.+. ....++.. |+..|
T Consensus 302 i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~ 381 (629)
T KOG2300|consen 302 IKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVN 381 (629)
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcc
Confidence 44444444433 112 2222223334799999999999998731 123311 12223333 45678
Q ss_pred cHHHHHHHHHHHHHhhCCCCCcchh--HhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHH--------HHHH--HHhh
Q 046354 358 LVEKGRKTFNLMSRAYGFKPRAEHY--SCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGA--------LLGA--CRLH 425 (510)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------l~~~--~~~~ 425 (510)
.++.|..-|....+. -..-|...+ ..+.-.|.+.|+.+.-.++++.+. .|+..++.. ++.+ ....
T Consensus 382 ~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~--p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 382 CYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG--PLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC--CCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 899999988888765 333333322 346677889999888888888776 332222211 1222 2467
Q ss_pred CCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHcCCChHHHHHHHHHH---HhhccccceeE
Q 046354 426 GDVRMADYIGERLIELQPS------SSGAYVLSANVHAARGEWDEFAQVRKKME---RRVKKVASFSQ 484 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~p~~~~ 484 (510)
+++.+|...+.+.++.... ..-....|+.+....|+..++.+...-.. +.++..|..-|
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLw 526 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLW 526 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHH
Confidence 8999999999998855411 11225667777888999999887765444 45555554444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.12 E-value=1.8 Score=23.84 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 447 GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|..++.+|...|++++|.+.|++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468889999999999999999999766
|
... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.07 E-value=0.44 Score=37.78 Aligned_cols=54 Identities=7% Similarity=0.101 Sum_probs=26.1
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHh
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (510)
++..+.+.+.++....+++.+... +...++...+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444455555555555555543 333344455555555555555555555554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.64 E-value=90 Score=36.66 Aligned_cols=62 Identities=16% Similarity=0.062 Sum_probs=45.4
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL 441 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (510)
..+|...++...+.|+++.|...+=...+.. -+..+...+.-....|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567777888888999999987765555343 2334445566677889999999999999843
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.00 E-value=29 Score=30.42 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=26.7
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCC----------CcchhHhHHhHHhhcCChHHHHHHHhhC
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKP----------RAEHYSCLADILRRAGQVKEAMRVVSKM 405 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (510)
.|...|...|.+....++++++........ -..+|..=+.+|..+.+-..-..++++.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQA 217 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHH
Confidence 344445555555555555555544311000 0234444455555555555544555443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.94 E-value=13 Score=28.66 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=50.5
Q ss_pred CCCcchhHhHHhHHhhcCCh---HHHHHHHhhCCC-CCC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 376 KPRAEHYSCLADILRRAGQV---KEAMRVVSKMPP-HER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.++..+--.+..++.+..+. .+-+.+++...+ ..| ......-|.-++.+.++++.+.++.+..++.+|++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45555556667777766554 445567776664 344 33345556677889999999999999999999888654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.62 E-value=2.9 Score=24.19 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888889999999888888754
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.55 E-value=24 Score=31.39 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
+++.....|..+|.+.+|.++.+.... .+...|-.++..+...|+--.|.+-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344555677888888888888877766 3556677788888888887777777766643
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.34 E-value=2.5 Score=34.31 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=34.8
Q ss_pred hHHHHHHHhhCCCCCCc-HHHHHHHHHHHHhhC-----------CHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 395 VKEAMRVVSKMPPHERD-HVVLGALLGACRLHG-----------DVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
+++|+.-|++....+|+ ..++..+..++...+ .+++|...|+++...+|++. .|..-..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~ 122 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Confidence 34455555555555774 457777776665432 36777888888889999985 44433333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.98 E-value=4 Score=36.19 Aligned_cols=69 Identities=13% Similarity=-0.016 Sum_probs=58.2
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
.+.+-.+|.+.++++.|.++.+.+....| ++.-+.--.-.|.+.|.+..|..-++..++..|++|..-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34567788999999999999999987777 5566777777799999999999999999999999886643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.64 E-value=22 Score=34.97 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=29.9
Q ss_pred HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+-|....+
T Consensus 648 l~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 45567777666654443 445577777777777777777776666544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.60 E-value=49 Score=32.08 Aligned_cols=58 Identities=10% Similarity=0.140 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
....+++..+..+..+.-...+..+|.. .+-..|..++.+|..+ ..++-..+++++.+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 3444555555555555555555555554 4555666666666665 44555566665544
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=82.21 E-value=3.4 Score=22.18 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999998888888877776553
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.21 E-value=6.9 Score=28.38 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=28.9
Q ss_pred CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
-|++.+..+.+.+|.+.+|+..|+++++-++....+....|-
T Consensus 42 VP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~ 83 (108)
T PF02284_consen 42 VPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYP 83 (108)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHH
T ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHH
Confidence 788888888999999999999999999988855444433443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.92 E-value=3.8 Score=24.54 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=22.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQSRFM 237 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~g~~ 237 (510)
.+..+|...|+.+.|.+++++....|-.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~~ 31 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGDE 31 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCH
Confidence 4677888889999999998888865543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=81.67 E-value=38 Score=30.12 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=50.4
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH-HHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS-ANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~ 456 (510)
++.....+...|.+.|++.+|+..|-... .|+...+..++......|. |.....|..- +--|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~--~~~~~~~~~ll~~~~~~~~---------------~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT--DPSAFAYVMLLEEWSTKGY---------------PSEADLFIARAVLQY 151 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHTS---------------S--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC--ChhHHHHHHHHHHHHHhcC---------------CcchhHHHHHHHHHH
Confidence 67788889999999999999988775544 3433333223333333333 3333333332 2336
Q ss_pred HHcCCChHHHHHHHHHH-Hhhcccccee
Q 046354 457 AARGEWDEFAQVRKKME-RRVKKVASFS 483 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~-~~~~~~p~~~ 483 (510)
.-.|+...|...++... +-+...|.+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~~~~~~p~~~ 179 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSKLIESHPKLE 179 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHHHHHH---EE
T ss_pred HHhcCHHHHHHHHHHHHHHHhccCcchh
Confidence 77899999999988887 3233345443
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.63 E-value=67 Score=32.96 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=59.9
Q ss_pred HHHHHhcCChhhHHHHHHhccccCC---ChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQR---NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDE 107 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 107 (510)
++.+.+.+.+++|+...+......| -......+|..+...|++++|-+..-.|...+..-|..-+..+...++...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 6678889999999999888777655 345677788888889999999999888887777777777777776666543
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=81.47 E-value=18 Score=26.24 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 046354 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 245 (510)
+..+...|++++|..+.+...-||...|-+|-. .+.|-.++...-+..|..+| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 346778899999999999988899999877764 46777777777777776665 344444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.37 E-value=6.7 Score=33.01 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=52.3
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
.+.-+..+.+.+.+++++...+.-.+.+| |..+-..++.-++-.|++++|..-++-.-.+.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44456677888999999988877665666 666777788889999999999999998888888864
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=80.94 E-value=54 Score=31.43 Aligned_cols=172 Identities=8% Similarity=-0.060 Sum_probs=94.0
Q ss_pred HHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRL 111 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 111 (510)
++++...| +.+...+-......++...+.....++....+......+.+.+..++..+....++++...+..+....+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 67787888 5678877777754466665555444444333444456666666777777888999999888887777666
Q ss_pred HHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHH
Q 046354 112 FDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMA 191 (510)
Q Consensus 112 ~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 191 (510)
..-+.. ++.......+.++...+.- . .+.+...+ ..+|..+-..-+.++...++.+
T Consensus 123 ~~~L~~--~~p~vR~aal~al~~r~~~-~------------------~~~L~~~L---~d~d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 123 EPLLAA--SEPPGRAIGLAALGAHRHD-P------------------GPALEAAL---THEDALVRAAALRALGELPRRL 178 (410)
T ss_pred HHHhcC--CChHHHHHHHHHHHhhccC-h------------------HHHHHHHh---cCCCHHHHHHHHHHHHhhcccc
Confidence 666654 4444444444444433211 0 11111111 1444455555555555555433
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 046354 192 QASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNL 230 (510)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 230 (510)
-.-.+..-....|..+-..-+.+....|. ++|...+..
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 32222222333555555555555555555 444444443
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.94 E-value=11 Score=27.04 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=25.9
Q ss_pred CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
-|++.+..+.+.+|.+.+|+..|+++++-++....
T Consensus 39 VP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~ 73 (103)
T cd00923 39 VPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG 73 (103)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 67777777788888888888888888887764333
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.82 E-value=10 Score=37.01 Aligned_cols=87 Identities=13% Similarity=0.005 Sum_probs=49.1
Q ss_pred cCChHHHHHHHhhCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 392 AGQVKEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
.|+...|...+.......| .......|.....+.|-...|-.++.+.+.+.-..|-++..++++|....+.+.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 5666666666555543444 22234445555555555556666666666555555555666666666666666666666
Q ss_pred HHHHHhhcc
Q 046354 470 KKMERRVKK 478 (510)
Q Consensus 470 ~~~~~~~~~ 478 (510)
+...+.-++
T Consensus 700 ~~a~~~~~~ 708 (886)
T KOG4507|consen 700 RQALKLTTK 708 (886)
T ss_pred HHHHhcCCC
Confidence 655533333
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.80 E-value=68 Score=32.82 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=17.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 046354 180 MITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYAR 217 (510)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 217 (510)
+|-.|.++|++++|.++..+... .....+-..+..|..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 34455666666666666633222 223344444444444
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.61 E-value=5.3 Score=35.91 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=63.5
Q ss_pred HhHHhhcCChHHHHHHHhhCCCC---CC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPH---ER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
..-|.+..++..|...|.+..+. .| +...|+.-..+-...|++..|+.-...++..+|.+...|..-+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 45566778888888888776543 33 44566666666667789999999999999999999888888888888888
Q ss_pred CChHHHHHHH
Q 046354 461 EWDEFAQVRK 470 (510)
Q Consensus 461 ~~~~A~~~~~ 470 (510)
++++|....+
T Consensus 168 ~~~~a~nw~e 177 (390)
T KOG0551|consen 168 RFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHh
Confidence 7555554443
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=80.51 E-value=13 Score=28.69 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=33.5
Q ss_pred HHHHHHHHHH--hcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 430 MADYIGERLI--ELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 430 ~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
.+..+|+.|. +.....+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888887 45556666699999999999999999999874
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.45 E-value=58 Score=31.51 Aligned_cols=99 Identities=10% Similarity=0.023 Sum_probs=73.0
Q ss_pred CCCCcchh-HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH--hhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 375 FKPRAEHY-SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR--LHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 375 ~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
..|+..++ +.+++-+.+.|-.++|..++......+| +...|..++..-. ..-+..-+...|+.+......++..|.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~ 534 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWM 534 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHH
Confidence 34544444 6788888889999999999998887755 7777877776432 223478889999999855557778888
Q ss_pred HHHHHHHHcCCChHHHHHHHHHH
Q 046354 451 LSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.....-...|+.+.+-.++.+..
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHH
Confidence 87777778888888877776665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 8e-06
Identities = 71/545 (13%), Positives = 147/545 (26%), Gaps = 197/545 (36%)
Query: 19 EMSQPDPVSCASMITVFLRN--HDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDE 76
E + +++VF + + + + ++I++
Sbjct: 10 ETGEHQ-YQYKDILSVFEDAFVDNFD-----CKDVQDMPKSILS---------------- 47
Query: 77 ARKVFDEIYEGNVYSWTSLISGYFKARQVDEG-RRLFDRMPLKLKNVVSWTTVVLGCAHN 135
++ D I ++ G RLF + K + +V
Sbjct: 48 -KEEIDHII---------------MSKDAVSGTLRLFWTLLSKQEEMVQ----------- 80
Query: 136 GLIAKLEVISWTTMCTGLERN---AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQ 192
+ L N M+ + E + P+ Y++ Q
Sbjct: 81 -----------KFVEEVLRINYKFLMSPIKTEQ--RQPSMM-------TRMYIE-----Q 115
Query: 193 ASELFN---LMPQRNVW---------TWNAMIDRYARN----GPEG------AAMKLLNL 230
L+N + + NV + R A+N G G A L+
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 231 MFQSRF--------MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHY 282
Q + + N + ++L ML+ +L I + + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQ---IDPNWTSRSDHSSN----- 222
Query: 283 VFWDWGFQLDVNSARLAFERLEAK-----------DVVSWTAMILAYSNHGHGFQVFRLF 331
+L ++S + RL +V A F L
Sbjct: 223 ------IKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAW---------NAFNLS 265
Query: 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR 391
++L + T+ ++T L +L + P E S L L
Sbjct: 266 CKILLT-TRFKQVTDF----------LSAATTTHISLDHHSMTLTPD-EVKSLLLKYLD- 312
Query: 392 AGQVKEAMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIG-------ERLIE--- 440
R +P + +++ + + D +IE
Sbjct: 313 -------CR-PQDLPREVLTTNPRRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 441 --LQPSSSGAY-----VLSANVH--AARGE--WDEFAQVRKKMERRVKKVASFSQIEVKG 489
L+P+ V + H W + ++ + V K+ +S +E +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD--VIKSDVMVVVNKLHKYSLVEKQP 421
Query: 490 KDHTL 494
K+ T+
Sbjct: 422 KESTI 426
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.7 bits (109), Expect = 2e-05
Identities = 41/349 (11%), Positives = 86/349 (24%), Gaps = 27/349 (7%)
Query: 144 ISWTTMCTGLERNAMTKLAREYFVQMPNK-------DIVAWNAMITAYVDAGNMAQASEL 196
LA V + + +NA++ + G + +
Sbjct: 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187
Query: 197 FNLMPQR----NVWTWNAMIDRYARNGP-EGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251
++ ++ ++ A + R G + L M Q +L+ +
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 252 -GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVS 310
+ + Q R+++ +L
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV-------YAKDGRVSYPKLHLPLKTL 300
Query: 311 WTAMILAYSNHGHGFQVFRLFARMLK-SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369
+ S + L D L R+T N +
Sbjct: 301 QCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRL 360
Query: 370 SRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429
R ++ R Y L +L V+ ++V+ +P L L A R
Sbjct: 361 EREV-YEGRFSLYPFL-CLLDEREVVRMLLQVLQALPAQGESFTTLARELSA-RTFSRHV 417
Query: 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478
+ ++ + Y+ + A+ E E R+ E
Sbjct: 418 VQRQRVSGQVQALQNHYRKYL---CLLASDAEVPEPCLPRQYWEALGAP 463
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.0 bits (107), Expect = 3e-05
Identities = 35/240 (14%), Positives = 70/240 (29%), Gaps = 23/240 (9%)
Query: 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALA-- 263
+ R + A L + Q+ P E +L G L + A +
Sbjct: 58 KALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQ 117
Query: 264 ---IRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK-------DVVSWTA 313
+L +Q+ L + C + A + + + A
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTD-------QLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY 373
++L ++ G ++ + + +G PD +++ L +
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
Query: 374 GFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADY 433
G K +A + L RA +K + + P L + +L DV D
Sbjct: 231 GLKLQALFTAVLLSEEDRATVLKAVHK----VKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.2 bits (105), Expect = 4e-05
Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQR-------NVWTWNAMIDRYARNGPEGAAM 225
A + + A L + + + +NA++ +AR G +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 226 KLLNLMFQSRFMPNETTCTSIL 247
+L ++ + P+ + + L
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAAL 207
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 2e-04
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 30 SMITVFLRNHDLPKAEALFRAMPESQR-----NIVAESAMIDGYVKAGRVDEARKVFDEI 84
+ L LP A L ++ + +A++ G+ + G E V +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 85 YEG----NVYSWTSLISGYFKARQVDEG-RRLFDRMP 116
+ ++ S+ + + + Q R ++M
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 8/99 (8%)
Query: 371 RAYGFKPR-AEHYSCLADILRRAGQVKEAM----RVVSKMPPHERDHVVLGALLGACRLH 425
A +P+ + LAD G R ++ P H LG
Sbjct: 14 AAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGR---VRWTQ 70
Query: 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
A + ++ + P G + + G+ +
Sbjct: 71 QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 6e-04
Identities = 55/450 (12%), Positives = 120/450 (26%), Gaps = 56/450 (12%)
Query: 68 YVKAGRVDEARKVFDEIYEGNVYS---WTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
+ +D+ARK ++ + S W I KA+ D+ +LF R +K+ ++
Sbjct: 22 EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL 81
Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVA---WNAMI 181
W L + T + M + A ++ + +I++ W I
Sbjct: 82 W------------KCYLSYVRETKGKLPSYKEKMAQ-AYDFALDKIGMEIMSYQIWVDYI 128
Query: 182 ---------TAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLM- 231
+Y + + ++ + + Y + ++
Sbjct: 129 NFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIE 188
Query: 232 -FQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSL---------------- 274
+M T +G+ N + Q+ +
Sbjct: 189 DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248
Query: 275 ---TYKCTCHYVFWDWGFQLDVNS-ARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRL 330
+ + L + + + + + +
Sbjct: 249 DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308
Query: 331 FARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390
+ R + + K + + + EK +N + P Y R
Sbjct: 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFAR 367
Query: 391 RAGQVKEAMRVVSKMP--PHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448
RA +K + K R HV + A L D +A I E ++
Sbjct: 368 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 427
Query: 449 YVLSANVHAARGEWDEFAQVRKKMERRVKK 478
+ + + E + R ER +
Sbjct: 428 VLAYIDYLSHLNEDNN---TRVLFERVLTS 454
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.17 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.15 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.15 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.13 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.12 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.12 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.07 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.07 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.06 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.02 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.99 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.95 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.89 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.88 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.87 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.85 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.85 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.83 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.8 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.8 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.79 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.78 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.78 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.77 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.77 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.75 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.72 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.7 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.68 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.68 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.68 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.67 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.61 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.61 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.6 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.58 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.57 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.54 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.51 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.49 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.47 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.41 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.41 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.41 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.4 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.38 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.37 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.37 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.36 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.35 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.32 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.29 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.29 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.28 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.22 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.22 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.2 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.19 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.19 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.17 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.14 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.1 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.06 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.06 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.05 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.9 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.89 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.86 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.79 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.71 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.66 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.62 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.61 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.44 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.43 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.34 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.2 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.07 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.92 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.92 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.9 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.75 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.74 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.42 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.41 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.39 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.31 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.26 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.17 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.4 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.97 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.94 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.68 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.58 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 94.32 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.7 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 93.16 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.79 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 92.34 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.22 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.21 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.19 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.76 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.49 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.62 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.29 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.36 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.22 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.1 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.89 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.74 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 88.7 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.66 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.48 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.76 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.01 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.01 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.78 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.44 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 86.08 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 85.62 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.28 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.23 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.76 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.29 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.86 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=331.53 Aligned_cols=456 Identities=9% Similarity=-0.038 Sum_probs=345.4
Q ss_pred cCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhh
Q 046354 5 GCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEI 84 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~ 84 (510)
.+.|.+..+...+..++.+++..|+.++..+.+.|++++|+.+|+++....|+..++..++.+|.+.|++++|..+|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 34566667777777777778888999999999999999999999998877788888888999999999999999999988
Q ss_pred --ccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcc---hhhHHHHHHHHHHHHhcCch
Q 046354 85 --YEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIA---KLEVISWTTMCTGLERNAMT 159 (510)
Q Consensus 85 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~l~~~~~~~~~~ 159 (510)
..++..+++.++.+|.+.|++++|.++|+++....+. ..++...+..+ ..+..++..++.+|.+.|++
T Consensus 144 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 144 DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-------EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp CGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-----------------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred hccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-------ccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 5578888999999999999999999999864332100 00111111111 11556677777777777777
Q ss_pred HHHHHHHhhCC--CCC-hhHHHH--------------------------------------HHHHHHhcCCHHHHHHHHh
Q 046354 160 KLAREYFVQMP--NKD-IVAWNA--------------------------------------MITAYVDAGNMAQASELFN 198 (510)
Q Consensus 160 ~~a~~~~~~~~--~~~-~~~~~~--------------------------------------li~~~~~~g~~~~A~~~~~ 198 (510)
++|.++|+++. .|+ ...+.. ++..|.+.|++++|.++|+
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 77777777765 222 222222 2445567788888888888
Q ss_pred hCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh---hHHHHHHHHhCCCcchh
Q 046354 199 LMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN---MLAHALAIRLGFEQETS 273 (510)
Q Consensus 199 ~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~~~~~~~~ 273 (510)
++.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+. .+..++..++..+...... ......+. ...+.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLV-DRHPEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhCcccHH
Confidence 8877 6778888888888888888888888888876542 2455566666655433332 23333333 22355677
Q ss_pred hhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHH
Q 046354 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350 (510)
Q Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 350 (510)
++..++..| .+.|++++|.+.|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++
T Consensus 375 ~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 375 TWLAVGIYY-----LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp HHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred HHHHHHHHH-----HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 888888888 999999999999998764 467799999999999999999999999999864 56788999999
Q ss_pred HhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC------CCc--HHHHHHHHHHH
Q 046354 351 SDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH------ERD--HVVLGALLGAC 422 (510)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~--~~~~~~l~~~~ 422 (510)
.+|.+.|++++|.++|+++.+. .+.++.+|..++.+|.+.|++++|.++|+++.+. .|+ ..+|..++.+|
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999875 3457889999999999999999999999988643 676 67999999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
.+.|++++|...++++++..|+++.+|..++.+|...|++++|.++++++.+..+
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999998874333
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=320.74 Aligned_cols=448 Identities=9% Similarity=-0.029 Sum_probs=377.8
Q ss_pred CcccCCCChHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHH
Q 046354 2 SQFGCTGKVKEATKLFDEMS--QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 79 (510)
..|.+.|++++|+.+|+++. .|+..++..++.+|.+.|++++|..+|+.+....++..+++.++.+|.+.|++++|.+
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHH
Confidence 35678899999999999997 5888999999999999999999999999997777899999999999999999999999
Q ss_pred HHHhhccC-------------------ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCC-hhhHHHHHHHHHhcCCcc
Q 046354 80 VFDEIYEG-------------------NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN-VVSWTTVVLGCAHNGLIA 139 (510)
Q Consensus 80 ~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~ 139 (510)
+|+++... +..+|+.++.+|.+.|++++|.++|++|.+..|+ ...+..+...+...+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp HHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHH
T ss_pred HHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhH
Confidence 99965433 4789999999999999999999999999887554 444554444332221111
Q ss_pred h-----------------hhHHHHHHHHHHHHhcCchHHHHHHHhhCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 046354 140 K-----------------LEVISWTTMCTGLERNAMTKLAREYFVQMPN--KDIVAWNAMITAYVDAGNMAQASELFNLM 200 (510)
Q Consensus 140 ~-----------------a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 200 (510)
. .....+..++..|.+.|++++|.++|+++.. ++..+++.++.+|.+.|++++|.++|+++
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 1 1334455567788899999999999999985 88999999999999999999999999998
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhh---hhHHHHHHHHhCCCcchhh
Q 046354 201 PQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE---NMLAHALAIRLGFEQETSL 274 (510)
Q Consensus 201 ~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 274 (510)
.+ .+..+|+.++.++.+.|++++|..+++++.+. .+.+..++..+...+....+ .......+... .+.+...
T Consensus 332 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 409 (597)
T 2xpi_A 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPA 409 (597)
T ss_dssp HHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHH
T ss_pred HHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHH
Confidence 64 46788999999999999999999999999854 34456677777666654433 33333333332 3446778
Q ss_pred hhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 046354 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351 (510)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 351 (510)
+..++..| .+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++.
T Consensus 410 ~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 483 (597)
T 2xpi_A 410 WIGFAHSF-----AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGV 483 (597)
T ss_dssp HHHHHHHH-----HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHH-----HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 99999999 999999999999998764 477899999999999999999999999999864 557889999999
Q ss_pred hcCcCCcHHHHHHHHHHHHHhh---CCCCC--cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAY---GFKPR--AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
.+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++.+..| +..+|..+...|...
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 9999999999999999997753 44676 67899999999999999999999999876666 788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
|++++|.+.++++++++|+++..+..++.+|.
T Consensus 564 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 564 KIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=237.34 Aligned_cols=369 Identities=13% Similarity=0.077 Sum_probs=264.3
Q ss_pred HHHHHhcCChhhHHHHHHhccccCCCh-hHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQRNI-VAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDE 107 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 107 (510)
...+.+.|++++|++.++.+.+..|+. ..+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 344556666666666666666555533 3344444555666666666666665533 234556666666666666666
Q ss_pred HHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHH
Q 046354 108 GRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAY 184 (510)
Q Consensus 108 A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~ 184 (510)
|...|+++.+..|+.. ..+..+..++.+.|++++|.+.|+++. +.+...+..+...+
T Consensus 86 A~~~~~~al~~~p~~~--------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFI--------------------DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHHCTTCH--------------------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchH--------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 6666666655433321 122333344444555555555555554 23345566677777
Q ss_pred HhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHH
Q 046354 185 VDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261 (510)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 261 (510)
...|++++|.+.|+++.+ | +..+|..+...+...|++++|...|+++...+ |+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------------------- 201 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN---------------------- 201 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT----------------------
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC----------------------
Confidence 778888888888877654 3 45677788888888888888888888876632 22
Q ss_pred HHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 046354 262 LAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG 338 (510)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 338 (510)
....+..+...+ ...|++++|...|++... .+..+|..+...|...|++++|...|+++.+.+
T Consensus 202 ---------~~~~~~~lg~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 202 ---------FLDAYINLGNVL-----KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp ---------CHHHHHHHHHHH-----HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ---------cHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 122233333444 667777888777776554 356788899999999999999999999999853
Q ss_pred CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHH
Q 046354 339 TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGA 417 (510)
Q Consensus 339 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 417 (510)
+.+..++..+...+...|++++|...++++.+. .+.+..++..++..+.+.|++++|...++++.+..| +..++..
T Consensus 268 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T 1w3b_A 268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp -SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 344668889999999999999999999999874 456788899999999999999999999999987767 5678999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
+...+.+.|++++|...|+++++..|+.+..+..++.++...|+
T Consensus 345 l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=224.14 Aligned_cols=350 Identities=16% Similarity=0.105 Sum_probs=294.0
Q ss_pred HHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcch
Q 046354 64 MIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAK 140 (510)
Q Consensus 64 li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~ 140 (510)
+...+.+.|++++|.+.++.+.+ | +...+..+...+...|++++|...++...+..|+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~------------------ 66 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL------------------ 66 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------------------
Confidence 45667889999999999999854 4 34567778888899999999999999888763432
Q ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHH
Q 046354 141 LEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDR 214 (510)
Q Consensus 141 a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 214 (510)
...+..+...+.+.|++++|.+.|+++. +.+..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...
T Consensus 67 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 67 --AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 2345556666777888899999999887 44566899999999999999999999998875 4 45668888899
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChh
Q 046354 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294 (510)
Q Consensus 215 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 294 (510)
+...|++++|.+.|+++.... |+ +...+..+...+ ...|+++
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~--p~-------------------------------~~~~~~~l~~~~-----~~~g~~~ 186 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQ--PN-------------------------------FAVAWSNLGCVF-----NAQGEIW 186 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHH-----HTTTCHH
T ss_pred HHHccCHHHHHHHHHHHHHhC--CC-------------------------------CHHHHHHHHHHH-----HHcCCHH
Confidence 999999999999999997632 32 233344445555 8899999
Q ss_pred hHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 295 SARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 295 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
+|...|+++.+ .+...|..+...+...|++++|...+++..... +.+..++..+...+...|++++|...++++.+
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998875 345688899999999999999999999998853 33567888999999999999999999999987
Q ss_pred hhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 372 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
. .+.++.++..++.++.+.|++++|.+.++++.+..| +..++..+...+...|++++|...++++++..|+++..+.
T Consensus 266 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 266 L--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp T--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4 344677899999999999999999999999886655 7789999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 046354 451 LSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.++.+|.+.|++++|+..++++.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999998874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-28 Score=231.69 Aligned_cols=204 Identities=9% Similarity=0.081 Sum_probs=173.5
Q ss_pred HHHHHhhCCC----C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhC
Q 046354 193 ASELFNLMPQ----R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLG 267 (510)
Q Consensus 193 A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 267 (510)
+..+.+.+.+ + ....++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|......
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~----------- 77 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA----------- 77 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCC-----------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCch-----------
Confidence 3444455543 2 23468889999999999999999999999999999999999999988432110
Q ss_pred CCcchhhhhhhhhhccccccccccChhhHHHHhcccCC----CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc
Q 046354 268 FEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343 (510)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (510)
... .+.+.++.|.++|++|.. ||..+|+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 78 ------------~~~-----~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 140 (501)
T 4g26_A 78 ------------TES-----SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140 (501)
T ss_dssp ------------SSS-----SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred ------------hhh-----hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence 001 456678999999999865 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--CCcHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--ERDHVVLGALLGA 421 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~ 421 (510)
.||+.+|.+|++.|++++|.++|++|.+. |+.||..+|++|+.+|++.|++++|.+++++|.+. .|+..||+.++..
T Consensus 141 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 141 RSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred ceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 99999999999999999999999999998 99999999999999999999999999999999753 8999999999998
Q ss_pred HHhh
Q 046354 422 CRLH 425 (510)
Q Consensus 422 ~~~~ 425 (510)
+...
T Consensus 220 F~s~ 223 (501)
T 4g26_A 220 FKSE 223 (501)
T ss_dssp HHSH
T ss_pred HhcC
Confidence 8754
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=228.34 Aligned_cols=181 Identities=13% Similarity=0.195 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhcCC---------hHHHHHHHHHHHHCCCCCCH
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMPQ----RNVWTWNAMIDRYARNGP---------EGAAMKLLNLMFQSRFMPNE 240 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~---------~~~A~~~~~~m~~~g~~p~~ 240 (510)
..+++.+|++|++.|++++|.++|++|.+ ||..+||.||.+|++.+. .++|.++|++|...|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 34688899999999999999999999975 899999999999987665 68899999999999999999
Q ss_pred hhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC----CChhhHHHHHH
Q 046354 241 TTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----KDVVSWTAMIL 316 (510)
Q Consensus 241 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~ 316 (510)
.||+.+|.++ ++.|++++|.++|++|.+ ||..+|+++|.
T Consensus 106 ~tyn~lI~~~-------------------------------------~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~ 148 (501)
T 4g26_A 106 ATFTNGARLA-------------------------------------VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148 (501)
T ss_dssp HHHHHHHHHH-------------------------------------HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------------------------HhcCCHHHHHHHHHHHHHcCCCCccceehHHHH
Confidence 9999999988 999999999999999875 89999999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA 392 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (510)
+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999998763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-25 Score=215.63 Aligned_cols=409 Identities=11% Similarity=-0.004 Sum_probs=303.4
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHc
Q 046354 25 PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFK 101 (510)
Q Consensus 25 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 101 (510)
...+......+.+.|++++|+..|+++.+..|+...+..+..++...|++++|...++.+.+ | +..+|..+..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 34566777888899999999999999988889988999999999999999999999998854 3 45688889999999
Q ss_pred CCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhH-----------------HHHHHHHHHHHhcCchHHHH
Q 046354 102 ARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEV-----------------ISWTTMCTGLERNAMTKLAR 163 (510)
Q Consensus 102 ~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~-----------------~~~~~l~~~~~~~~~~~~a~ 163 (510)
.|++++|...|+++... +++......++..+........+.. ..................+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999988876 3344444333333222110000000 00000000000011111111
Q ss_pred HHHhhCC----------CCChhHHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-ChhhHHHHHH
Q 046354 164 EYFVQMP----------NKDIVAWNAMITAYVD---AGNMAQASELFNLMPQ----------------R-NVWTWNAMID 213 (510)
Q Consensus 164 ~~~~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~ 213 (510)
..+.... +.+...+......+.. .|++++|...|+++.+ | +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1222111 1124445555555554 8999999998887643 1 3467888889
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccCh
Q 046354 214 RYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV 293 (510)
Q Consensus 214 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 293 (510)
.+...|++++|...++++.+.. |+.. .+..+...+ ...|++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~--------------------------------~~~~l~~~~-----~~~~~~ 286 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVN--------------------------------SYIYMALIM-----ADRNDS 286 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHH--------------------------------HHHHHHHHH-----HTSSCC
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHH--------------------------------HHHHHHHHH-----HHCCCH
Confidence 9999999999999999987743 3222 223333444 788999
Q ss_pred hhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHH
Q 046354 294 NSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 294 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 370 (510)
++|...+++... .+...|..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.
T Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988765 356788999999999999999999999999863 4456788899999999999999999999998
Q ss_pred HhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-------HHHHHHHHHHHHh---hCCHHHHHHHHHHHHh
Q 046354 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-------HVVLGALLGACRL---HGDVRMADYIGERLIE 440 (510)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 440 (510)
+. .+.++..+..++..+.+.|++++|...++++.+..|+ ...+..+...+.. .|++++|...++++++
T Consensus 366 ~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 366 RK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 75 3446788899999999999999999999988654332 3388899999999 9999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046354 441 LQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 475 (510)
..|+++..+..++.+|...|++++|...+++..+.
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988743
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-24 Score=204.51 Aligned_cols=385 Identities=9% Similarity=0.044 Sum_probs=286.7
Q ss_pred HHHHHHhhcC---CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc-
Q 046354 12 EATKLFDEMS---QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE- 86 (510)
Q Consensus 12 ~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~- 86 (510)
.+...+.... +.++..+..+...+.+.|++++|+.+|+++.+..| +...+..+..++...|++++|...|+.+.+
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444444444 34567889999999999999999999999998766 678899999999999999999999999965
Q ss_pred --CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCCh----hhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchH
Q 046354 87 --GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNV----VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTK 160 (510)
Q Consensus 87 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 160 (510)
.+..++..+...|.+.|++++|...|+++.+..|+. ..+..+...+.. ..+..+...+...|+++
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM---------QRLRSQALNAFGSGDYT 160 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCHH
Confidence 356789999999999999999999999999875543 556666555322 23445667788999999
Q ss_pred HHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 161 LAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 161 ~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
+|.+.++.+. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|...|+++..
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 239 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 239 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 9999999987 55778899999999999999999999998875 5678999999999999999999999999976
Q ss_pred CCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHH
Q 046354 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314 (510)
Q Consensus 235 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 314 (510)
..|+.......+.... ....+..+
T Consensus 240 -~~p~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~ 263 (450)
T 2y4t_A 240 -LDQDHKRCFAHYKQVK-------------------------------------------------------KLNKLIES 263 (450)
T ss_dssp -HCTTCHHHHHHHHHHH-------------------------------------------------------HHHHHHHH
T ss_pred -hCCChHHHHHHHHHHH-------------------------------------------------------HHHHHHHH
Confidence 3444433322221110 01123345
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCC-----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKSGTKPD-----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++.+.+. .+.+...+..++.+|
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 67788889999999999988874 455 336777788888889999999999888764 244678888888888
Q ss_pred hhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHH------------HHhhC-----CHHHHHHHHHH-HHhcCCCCch---
Q 046354 390 RRAGQVKEAMRVVSKMPPHERD-HVVLGALLGA------------CRLHG-----DVRMADYIGER-LIELQPSSSG--- 447 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~~-----~~~~A~~~~~~-~~~~~p~~~~--- 447 (510)
...|++++|...++++.+..|+ ...+..+..+ |...| +.+++.+.|++ .++..|++..
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~ 419 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEE 419 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCch
Confidence 8899999999998888777774 4455555522 33334 56777888886 5677776432
Q ss_pred -------hHHHHHHHHHHcCCChHHH
Q 046354 448 -------AYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 448 -------~~~~l~~~~~~~g~~~~A~ 466 (510)
.+..+..+|...|+.+++.
T Consensus 420 ~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 420 EKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2555666666666655543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=214.71 Aligned_cols=411 Identities=12% Similarity=0.015 Sum_probs=311.1
Q ss_pred cccCCCChHHHHHHHhhcC--CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCC-hhHHHHHHHHHHhcCChhhHHH
Q 046354 3 QFGCTGKVKEATKLFDEMS--QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRN-IVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~ 79 (510)
.+.+.|++++|+..|+.+. .|++..|..+..++.+.|++++|+..|+++.+..|+ ...+..+..++...|++++|..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3567899999999999997 689999999999999999999999999999988774 5788899999999999999999
Q ss_pred HHHhhccC---ChhhHHHHHHHHHcCCChHHHHHHHHhcc---------------------ccCCChhhHHHHHHHHHhc
Q 046354 80 VFDEIYEG---NVYSWTSLISGYFKARQVDEGRRLFDRMP---------------------LKLKNVVSWTTVVLGCAHN 135 (510)
Q Consensus 80 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------------~~~~~~~~~~~ll~~~~~~ 135 (510)
.|+.+.+. +......++..+........+.+.+..+. ...|+.......+..+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 99999542 33344444444443333332222221110 0022222222221111111
Q ss_pred CCcc----hhhHHHHHHHHHHHHh---cCchHHHHHHHhhCCC-----------------CChhHHHHHHHHHHhcCCHH
Q 046354 136 GLIA----KLEVISWTTMCTGLER---NAMTKLAREYFVQMPN-----------------KDIVAWNAMITAYVDAGNMA 191 (510)
Q Consensus 136 ~~~~----~a~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~~~ 191 (510)
.... ..+...+......+.. .|+++.|...++++.. .+..++..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 1110 1134555555555554 8999999999987653 12457788899999999999
Q ss_pred HHHHHHhhCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCC
Q 046354 192 QASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFE 269 (510)
Q Consensus 192 ~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 269 (510)
+|...|+++.+ |+...+..+...+...|++++|...++++.... |
T Consensus 255 ~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~------------------------------- 301 (514)
T 2gw1_A 255 GAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--S------------------------------- 301 (514)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--T-------------------------------
T ss_pred HHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--c-------------------------------
Confidence 99999998765 557889999999999999999999999997643 2
Q ss_pred cchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
.+...+..+...+ ...|++++|...|++..+ .+...+..+...|...|++++|...++++.+.. +.+...+
T Consensus 302 ~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 375 (514)
T 2gw1_A 302 NNSSVYYHRGQMN-----FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVP 375 (514)
T ss_dssp TCTHHHHHHHHHH-----HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHH
T ss_pred CCHHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHH
Confidence 1223334444455 888999999999998754 456788999999999999999999999998863 4466788
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhh---cCChHHHHHHHhhCCCCCC-cHHHHHHH
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRR---AGQVKEAMRVVSKMPPHER-DHVVLGAL 418 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p-~~~~~~~l 418 (510)
..+...+...|++++|...++.+.+...-.++ ...+..++..+.. .|++++|...++++.+..| +..++..+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 88999999999999999999999875222222 3388899999999 9999999999999876666 67788899
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
...+...|++++|...+++++++.|+++..+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999999988776655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=207.83 Aligned_cols=406 Identities=12% Similarity=0.014 Sum_probs=282.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 99 (510)
....|..+...+.+.|++++|+..|+++.+..| +...+..+..++...|++++|.+.++.+.+ .+..++..+...+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456677788888888888888888888887766 567777888888888888888888888754 3456777888888
Q ss_pred HcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh----------------hHHHHHHHHHHHHhcCchHHHH
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL----------------EVISWTTMCTGLERNAMTKLAR 163 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a----------------~~~~~~~l~~~~~~~~~~~~a~ 163 (510)
...|++++|...|+.+... |+.... .+..+...+....+ ........+..+....+.+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLN-GDFDGA--SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHhcC-CCCChH--HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 8888888888888644322 221110 01111100000000 0000011222333444455555
Q ss_pred HHHhhCCCCChh---HHHHHHHHHHh--------cCCHHHHHHHHhhCCC--CC--------hhhHHHHHHHHHhcCChH
Q 046354 164 EYFVQMPNKDIV---AWNAMITAYVD--------AGNMAQASELFNLMPQ--RN--------VWTWNAMIDRYARNGPEG 222 (510)
Q Consensus 164 ~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~ 222 (510)
..+......+.. ....+...+.. .|++++|..+|+++.+ |+ ..++..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 555444422222 22333322222 2477888888887765 33 234666777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcc
Q 046354 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302 (510)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 302 (510)
+|...++++... .|+. ..+..+...+ ...|++++|...|++
T Consensus 261 ~A~~~~~~~~~~--~~~~--------------------------------~~~~~l~~~~-----~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTP--------------------------------NSYIFLALTL-----ADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHHHHHHH--CCCH--------------------------------HHHHHHHHHT-----CCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCc--------------------------------hHHHHHHHHH-----HHhcCHHHHHHHHHH
Confidence 888888888763 2332 2333344444 889999999999988
Q ss_pred cCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc
Q 046354 303 LEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA 379 (510)
Q Consensus 303 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 379 (510)
..+ .+..+|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .+.++
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 378 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLP 378 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCT
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 765 456789999999999999999999999998863 445678888899999999999999999999875 34467
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhcC
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-------DHVVLGALLGACRLH----------GDVRMADYIGERLIELQ 442 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~ 442 (510)
..+..+...+...|++++|...++++.+..| ....+......+... |++++|...++++++..
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 7888999999999999999999988764322 122344455667777 99999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 443 PSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
|+++..+..++.+|...|++++|.+.+++..+
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999998874
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-23 Score=199.58 Aligned_cols=337 Identities=11% Similarity=0.044 Sum_probs=247.9
Q ss_pred hHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 43 KAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 43 ~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
.+...+.......| +...+..+...+.+.|++++|..+|+.+.+ .+..+|..+..++...|++++|...|+++.+.
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444444444444 567788888888888888888888888854 35677888888888888888888888888764
Q ss_pred CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 046354 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198 (510)
Q Consensus 119 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 198 (510)
.|+ +..++..+..+|.+.|++++|...|+
T Consensus 90 ~p~---------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 90 KMD---------------------------------------------------FTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp CTT---------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCC---------------------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 332 22334444445555555555555555
Q ss_pred hCCC--CC-h---hhHHH------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHH
Q 046354 199 LMPQ--RN-V---WTWNA------------MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260 (510)
Q Consensus 199 ~~~~--~~-~---~~~~~------------li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 260 (510)
++.+ |+ . ..+.. +...+...|++++|...|+++.+.. |
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~---------------------- 174 (450)
T 2y4t_A 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--V---------------------- 174 (450)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T----------------------
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C----------------------
Confidence 4433 21 1 23333 3455888999999999999997632 2
Q ss_pred HHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046354 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337 (510)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 337 (510)
.+..++..++..| ...|++++|...|+++.+ .+..+|..+...|...|++++|...|+++...
T Consensus 175 ---------~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 175 ---------WDAELRELRAECF-----IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp ---------TCHHHHHHHHHHH-----HHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------CChHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2333444555556 889999999999998865 46789999999999999999999999999975
Q ss_pred CCCCCch-hHHHH------------HHhcCcCCcHHHHHHHHHHHHHhhCCCCC-----cchhHhHHhHHhhcCChHHHH
Q 046354 338 GTKPDEI-TFVGV------------LSDCSHAGLVEKGRKTFNLMSRAYGFKPR-----AEHYSCLADILRRAGQVKEAM 399 (510)
Q Consensus 338 g~~p~~~-~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~ 399 (510)
.|+.. .+..+ ...+...|++++|..+|+.+.+. .|+ ...+..++.++.+.|++++|.
T Consensus 241 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 241 --DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 45544 44443 77888999999999999999875 454 347888999999999999999
Q ss_pred HHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH------------HHHHcC-----C
Q 046354 400 RVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN------------VHAARG-----E 461 (510)
Q Consensus 400 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~ 461 (510)
..++++.+..| +..+|..+..+|...|++++|...+++++++.|+++..+..++. .|...| +
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 99999876666 67899999999999999999999999999999999999998884 455566 5
Q ss_pred ChHHHHHHHHHH
Q 046354 462 WDEFAQVRKKME 473 (510)
Q Consensus 462 ~~~A~~~~~~~~ 473 (510)
.+++.+.++++.
T Consensus 396 ~~~~~~~y~~~~ 407 (450)
T 2y4t_A 396 KQEIIKAYRKLA 407 (450)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566777777643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=192.37 Aligned_cols=384 Identities=10% Similarity=0.022 Sum_probs=259.6
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhccccCC-ChhhHHHHHHHH
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLK-NVVSWTTVVLGC 132 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ll~~~ 132 (510)
....+..+...+.+.|++++|.+.|+++.+ .+..+|..+..+|.+.|++++|.+.|+++.+..| +..++..+..++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456778889999999999999999999955 4667899999999999999999999999988744 444455555444
Q ss_pred HhcCCcchhhHHH---------HHHHHHHHHhcCchHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCCHHHHHHHH
Q 046354 133 AHNGLIAKLEVIS---------WTTMCTGLERNAMTKLAREYFVQMPNK------DIVAWNAMITAYVDAGNMAQASELF 197 (510)
Q Consensus 133 ~~~~~~~~a~~~~---------~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 197 (510)
...|+++.+-... ....+..+...+....+...++.+... ........+..+...++.+.+...+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 4444444431100 001111122222223333333333210 0001122233334444444444444
Q ss_pred hhCCCCChh---hHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHhh-HHHHHHHhhhhhhhhHHHHHHHH
Q 046354 198 NLMPQRNVW---TWNAMIDRYAR--------NGPEGAAMKLLNLMFQSRFMPNETT-CTSILTSCEGMLENMLAHALAIR 265 (510)
Q Consensus 198 ~~~~~~~~~---~~~~li~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~ 265 (510)
......+.. ....+...+.. .|++++|..+++++.+. .|+... +..+.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~------------------ 243 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAA------------------ 243 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHH------------------
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHH------------------
Confidence 444332211 22222222221 24677777777777653 232211 11111
Q ss_pred hCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc
Q 046354 266 LGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE 343 (510)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (510)
..+..+...+ ...|++++|...|++... |+...|..+...|...|++++|...++++.+.. +.+.
T Consensus 244 -------~~~~~~g~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 310 (537)
T 3fp2_A 244 -------LALCYTGIFH-----FLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP 310 (537)
T ss_dssp -------HHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH
T ss_pred -------HHHHHHHHHH-----HhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH
Confidence 1122333444 778999999999998875 667788888999999999999999999998863 4556
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
.++..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+..| +...+..+...+
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 78888999999999999999999999875 234577888999999999999999999998876666 566888999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchh------HHHHHHHHHHc----------CCChHHHHHHHHHHHh
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGA------YVLSANVHAAR----------GEWDEFAQVRKKMERR 475 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 475 (510)
...|++++|...++++++..|+++.. +..++.++... |++++|...++++.+.
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 99999999999999999888766555 34556778888 9999999999988743
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-20 Score=171.16 Aligned_cols=322 Identities=12% Similarity=0.071 Sum_probs=228.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 99 (510)
|+..+..+...+.+.|++++|+..|+++.+..| +...+..+...+...|++++|...++.+.+ | +..++..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456788888999999999999999999988877 577888899999999999999999999854 3 557899999999
Q ss_pred HcCCChHHHHHHHHhccccCC---C-hhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChh
Q 046354 100 FKARQVDEGRRLFDRMPLKLK---N-VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIV 175 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 175 (510)
...|++++|...|+++.+..| + ...+..+..... ..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------------------------~~ 121 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------------------------MQ 121 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------------------------HH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------------------------------HH
Confidence 999999999999999988655 2 222222111100 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
.+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.... |+
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~------------- 186 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SD------------- 186 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SC-------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-------------
Confidence 223345566666777777766666543 345666667777777777777777777665421 11
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (510)
+...|..+...|...|++++|...++
T Consensus 187 ------------------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 187 ------------------------------------------------------NTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp ------------------------------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------------------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 23345556666667777777777777
Q ss_pred HHHHcCCCCCc-hhHH------------HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-c----chhHhHHhHHhhcCC
Q 046354 333 RMLKSGTKPDE-ITFV------------GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-A----EHYSCLADILRRAGQ 394 (510)
Q Consensus 333 ~m~~~g~~p~~-~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~ 394 (510)
+..+. .|+. ..+. .+...+...|++++|...++.+.+. .|+ + ..+..+..++.+.|+
T Consensus 213 ~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 213 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccC
Confidence 77664 2332 2222 2245567778888888888888765 233 2 224456778888888
Q ss_pred hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 046354 395 VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (510)
+++|...+++..+..| +..++..+...+...|++++|...|+++++.+|+++..+..+..++...
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 8888888888776556 6678888888888888888888888888888888887777777665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=173.11 Aligned_cols=304 Identities=12% Similarity=0.020 Sum_probs=245.7
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--R-NVWTWNAMIDRY 215 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 215 (510)
++..+..+...+...|++++|.+.|+.+. +.+..++..+..++...|++++|...|+++.+ | +...|..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 34567778889999999999999999987 55678899999999999999999999998865 3 668899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccC
Q 046354 216 ARNGPEGAAMKLLNLMFQSRFMP---NETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292 (510)
Q Consensus 216 ~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (510)
...|++++|...|+++.+. .| +.......+..... ..........+ ...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~-----~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-------------------MQRLRSQALDA-----FDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHH-----HHTTC
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHH-----HHccC
Confidence 9999999999999999874 45 22222222111100 01122233445 78999
Q ss_pred hhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHH
Q 046354 293 VNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLM 369 (510)
Q Consensus 293 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 369 (510)
+++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998765 456788999999999999999999999999863 556778889999999999999999999999
Q ss_pred HHhhCCCCCcchhH------------hHHhHHhhcCChHHHHHHHhhCCCCCCcHH-----HHHHHHHHHHhhCCHHHHH
Q 046354 370 SRAYGFKPRAEHYS------------CLADILRRAGQVKEAMRVVSKMPPHERDHV-----VLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 370 ~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~A~ 432 (510)
.+. .+.+...+. .++..+.+.|++++|...++++.+..|+.. .+..+...+...|++++|.
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 875 222333332 236678999999999999998876666432 3455778899999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
..++++++..|+++..+..++.+|...|++++|...++++.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998773
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-19 Score=163.77 Aligned_cols=270 Identities=12% Similarity=0.018 Sum_probs=158.6
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC-C
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNG-P 220 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~ 220 (510)
.++..+...|++++|.++++++. +.+...+..++.++...|++++|...++++.+ .+...|..+...+...| +
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhh
Confidence 34455555666777777776665 33445555666667777777777777766654 34566666777777777 6
Q ss_pred hHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHh
Q 046354 221 EGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAF 300 (510)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 300 (510)
+++|...|+++.... |+ +...+..+...+ ...|++++|...|
T Consensus 107 ~~~A~~~~~~a~~~~--~~-------------------------------~~~~~~~l~~~~-----~~~~~~~~A~~~~ 148 (330)
T 3hym_B 107 NEHARRYLSKATTLE--KT-------------------------------YGPAWIAYGHSF-----AVESEHDQAMAAY 148 (330)
T ss_dssp HHHHHHHHHHHHTTC--TT-------------------------------CTHHHHHHHHHH-----HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--Cc-------------------------------cHHHHHHHHHHH-----HHccCHHHHHHHH
Confidence 777777777765432 11 122222333333 5566666666666
Q ss_pred cccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCC--
Q 046354 301 ERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF-- 375 (510)
Q Consensus 301 ~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-- 375 (510)
++..+ .+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+...-
T Consensus 149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 65543 233455556666666666666666666666542 333455556666666666666666666666553110
Q ss_pred -----CCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 376 -----KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 376 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
+....++..+..++.+.|++++|...+++..+..| +...+..+...+...|++++|...++++++..|+++..+
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 22344556666666666666666666666554434 445566666666666666666666666666666666666
Q ss_pred HHHHHHH
Q 046354 450 VLSANVH 456 (510)
Q Consensus 450 ~~l~~~~ 456 (510)
..++.++
T Consensus 308 ~~l~~~~ 314 (330)
T 3hym_B 308 TMLGHCI 314 (330)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-17 Score=161.13 Aligned_cols=401 Identities=13% Similarity=0.103 Sum_probs=271.6
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHHHHHHH
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTSLISG 98 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~ 98 (510)
+-|...|..++. +.+.|++++|..+|+++.+..| +...|..++..+.+.|++++|..+|++.++ |+...|..++..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 346788999998 4789999999999999999877 566889999999999999999999999965 777777777753
Q ss_pred H-HcCCChHHHHH----HHHhcccc----CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhC
Q 046354 99 Y-FKARQVDEGRR----LFDRMPLK----LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169 (510)
Q Consensus 99 ~-~~~g~~~~A~~----~~~~m~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 169 (510)
. ...|+.+.|.+ +|++.... .++...|...+.......... .+...|+++.|..+|++.
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVG------------SYAENQRITAVRRVYQRG 156 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCS------------STTHHHHHHHHHHHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcc------------cHHHHhHHHHHHHHHHHH
Confidence 3 35677777765 66665442 123344444443322211000 012367888899998887
Q ss_pred C-CCCh---hHHHHHHHHHH-------------hcCCHHHHHHHHhh-------CC------CCC--------hhhHHHH
Q 046354 170 P-NKDI---VAWNAMITAYV-------------DAGNMAQASELFNL-------MP------QRN--------VWTWNAM 211 (510)
Q Consensus 170 ~-~~~~---~~~~~li~~~~-------------~~g~~~~A~~~~~~-------~~------~~~--------~~~~~~l 211 (510)
. .|.. ..|........ +.+++..|..++.. +. .|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 7 3322 23332222110 12334444433332 10 011 1223333
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcc
Q 046354 212 IDRYARN----GPE----GAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283 (510)
Q Consensus 212 i~~~~~~----~~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (510)
+...... ++. .+|..+|++.... .+.++.+|...+..+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~---------------------------------~p~~~~~w~~~~~~~- 282 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV---------------------------------LGHHPDIWYEAAQYL- 282 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH---------------------------------HTTCHHHHHHHHHHH-
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh---------------------------------CCCCHHHHHHHHHHH-
Confidence 2221111 111 1333334333321 133445555555554
Q ss_pred cccccc-------ccChh-------hHHHHhcccCC---C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc--
Q 046354 284 FWDWGF-------QLDVN-------SARLAFERLEA---K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE-- 343 (510)
Q Consensus 284 ~~~~~~-------~~~~~-------~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 343 (510)
.. .|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+.
T Consensus 283 ----~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 356 (530)
T 2ooe_A 283 ----EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT 356 (530)
T ss_dssp ----HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHH
T ss_pred ----HHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCch
Confidence 43 68877 89999998774 3 4678999999999999999999999999984 5653
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhH-HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADI-LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLG 420 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 420 (510)
..|...+..+.+.|+.+.|.++|++..+. +| +...+...+.. +...|+.++|..+|++..+..| +...|..++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 47888888888899999999999999863 34 33333332222 3368999999999998876667 6789999999
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 421 ACRLHGDVRMADYIGERLIELQPSSSG----AYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
.+.+.|+.++|..+|++++...|.++. .|...+......|+.+.+.++.+++.+..+.
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999998877665 6777888888999999999999998855553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.9e-19 Score=161.58 Aligned_cols=262 Identities=10% Similarity=0.054 Sum_probs=221.0
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
+.+...+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. |
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~--------- 87 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--P--------- 87 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T---------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--c---------
Confidence 45667788889999999999999999998865 355677788899999999999999999997742 2
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccccc-ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCC
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL-DVNSARLAFERLEA---KDVVSWTAMILAYSNHGH 323 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 323 (510)
.+...+..+...+ ...| ++++|...|++... .+...|..+...+...|+
T Consensus 88 ----------------------~~~~~~~~l~~~~-----~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 88 ----------------------SNPVSWFAVGCYY-----LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp ----------------------TSTHHHHHHHHHH-----HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred ----------------------CCHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 2233334444445 7788 89999999998775 356789999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVS 403 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (510)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|...++
T Consensus 141 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 141 HDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp HHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999863 445677888889999999999999999999863 34467888999999999999999999998
Q ss_pred hCCCC----------CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 404 KMPPH----------ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 404 ~~~~~----------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++.+. .....++..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77532 22456889999999999999999999999999999999999999999999999999999999665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.3e-18 Score=151.32 Aligned_cols=271 Identities=10% Similarity=0.006 Sum_probs=213.9
Q ss_pred HHHHhcCchHHHHHHHhhCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHH
Q 046354 151 TGLERNAMTKLAREYFVQMPNKDI----VAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMK 226 (510)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 226 (510)
+-....|+++.|+...+.....++ .....+.++|...|+++.|...++....|+..++..+...+...++.++|++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 445678999999999988763332 3456678999999999999998887655778889999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCC
Q 046354 227 LLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAK 306 (510)
Q Consensus 227 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 306 (510)
.++++...+..|+...+...+. ..+ ...|++++|.+.+++ ..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la-------------------------------~~~-----~~~g~~~~Al~~l~~--~~ 128 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAA-------------------------------SIY-----FYDQNPDAALRTLHQ--GD 128 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHH-------------------------------HHH-----HHTTCHHHHHHHHTT--CC
T ss_pred HHHHHHhcccCCCCHHHHHHHH-------------------------------HHH-----HHCCCHHHHHHHHhC--CC
Confidence 9999988777676655544433 223 788999999999998 56
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH---HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF---VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYS 383 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (510)
+...+..++..|.+.|++++|.+.|+++.+. .|+.... ...+..+...|++++|..+|+++.+. .+.++..++
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~ 204 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLN 204 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 7778999999999999999999999999886 4664322 12233444668999999999999885 466788889
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRM-ADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
.+..++.+.|++++|...++++.+..| +..++..++..+...|+..+ +.++++++++.+|+++.... ...+.+.
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~ 280 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKEND 280 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHH
Confidence 999999999999999999999887777 67788999989888998865 67899999999999975433 3444444
Q ss_pred ChHHHH
Q 046354 462 WDEFAQ 467 (510)
Q Consensus 462 ~~~A~~ 467 (510)
++++..
T Consensus 281 fd~~~~ 286 (291)
T 3mkr_A 281 FDRLVL 286 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-17 Score=158.20 Aligned_cols=378 Identities=11% Similarity=0.012 Sum_probs=284.1
Q ss_pred HHHHhhcC-CCChhhHHHHHHHHHh----cCChhhHHHHHHhccccCCChhHHHHHHHHHHh----cCChhhHHHHHHhh
Q 046354 14 TKLFDEMS-QPDPVSCASMITVFLR----NHDLPKAEALFRAMPESQRNIVAESAMIDGYVK----AGRVDEARKVFDEI 84 (510)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~ 84 (510)
...++... ..++.++..+...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|.+.|++.
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 105 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA 105 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 34444433 5578888888888888 89999999999998875 466777888888888 89999999999998
Q ss_pred ccC-ChhhHHHHHHHHHc----CCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHh----
Q 046354 85 YEG-NVYSWTSLISGYFK----ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER---- 155 (510)
Q Consensus 85 ~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~---- 155 (510)
.+. +...+..|...|.. .+++++|...|++..+. .+.. .+..+...|..
T Consensus 106 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~---------------------a~~~Lg~~y~~g~g~ 163 (490)
T 2xm6_A 106 ALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-GRDS---------------------GQQSMGDAYFEGDGV 163 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHH---------------------HHHHHHHHHHHTSSS
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHH---------------------HHHHHHHHHHcCCCC
Confidence 664 56677788888887 78999999999987662 2222 33334444544
Q ss_pred cCchHHHHHHHhhCC-CCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCChHHHH
Q 046354 156 NAMTKLAREYFVQMP-NKDIVAWNAMITAYVD----AGNMAQASELFNLMPQ-RNVWTWNAMIDRYAR----NGPEGAAM 225 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~ 225 (510)
.++.++|.+.|++.. ..++..+..+...|.. .++.++|.+.|++..+ .+...+..+...|.. .+++++|.
T Consensus 164 ~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 678888999888876 5677788888888888 8999999999988765 567778888888876 78999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC
Q 046354 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305 (510)
Q Consensus 226 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 305 (510)
..|++..+.|... .+ ..+...|. ......++.++|...|++..+
T Consensus 244 ~~~~~a~~~~~~~---a~--------------------------------~~lg~~y~-~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 244 VLFSQSAEQGNSI---AQ--------------------------------FRLGYILE-QGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHHHHHHTTTCHH---HH--------------------------------HHHHHHHH-HTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHH---HH--------------------------------HHHHHHHH-CCCCCCCCHHHHHHHHHHHHH
Confidence 9999987754211 11 11111110 000336889999999988766
Q ss_pred -CChhhHHHHHHHHHhc-----CChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC---cHHHHHHHHHHHHHhhCCC
Q 046354 306 -KDVVSWTAMILAYSNH-----GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG---LVEKGRKTFNLMSRAYGFK 376 (510)
Q Consensus 306 -~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~ 376 (510)
.+...+..+...|... +++++|...|++..+.| +...+..+...+...| +.++|.++|++..+.
T Consensus 288 ~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---- 360 (490)
T 2xm6_A 288 QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---- 360 (490)
T ss_dssp TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----
T ss_pred cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----
Confidence 4566778888888887 89999999999998865 3445666666665545 889999999999874
Q ss_pred CCcchhHhHHhHHhh----cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCC---C
Q 046354 377 PRAEHYSCLADILRR----AGQVKEAMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMADYIGERLIELQPS---S 445 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~---~ 445 (510)
.++..+..|...|.. .+++++|.+.|++..+. .+...+..|...|.. .+++++|...|+++.+.+|+ +
T Consensus 361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 439 (490)
T 2xm6_A 361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT 439 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence 467788888888888 89999999999987633 357788888888887 79999999999999988854 5
Q ss_pred chhHHHHHHHHHH
Q 046354 446 SGAYVLSANVHAA 458 (510)
Q Consensus 446 ~~~~~~l~~~~~~ 458 (510)
+.....++.++..
T Consensus 440 ~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 440 ENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHTTSCHH
T ss_pred HHHHHHHHhcCHh
Confidence 5566666665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=166.61 Aligned_cols=280 Identities=13% Similarity=0.027 Sum_probs=206.7
Q ss_pred HhcCchHHHHH-HHhhCC--CC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChH
Q 046354 154 ERNAMTKLARE-YFVQMP--NK-----DIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEG 222 (510)
Q Consensus 154 ~~~~~~~~a~~-~~~~~~--~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 222 (510)
...|+++.|.+ .+++.. .| +...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34466777777 776555 11 245577778888888888888888877654 35667778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcc
Q 046354 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302 (510)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 302 (510)
+|...|+++.+.. |+ +...+..+...+ ...|++++|...|++
T Consensus 116 ~A~~~~~~al~~~--~~-------------------------------~~~~~~~l~~~~-----~~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 116 LAISALRRCLELK--PD-------------------------------NQTALMALAVSF-----TNESLQRQACEILRD 157 (368)
T ss_dssp HHHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHH-----HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CC-------------------------------CHHHHHHHHHHH-----HHcCCHHHHHHHHHH
Confidence 8888888876632 21 222333334444 677777787777776
Q ss_pred cCC--C-ChhhHHH---------------HHHHHHhcCChhhHHHHHHHHHHcCCCC-CchhHHHHHHhcCcCCcHHHHH
Q 046354 303 LEA--K-DVVSWTA---------------MILAYSNHGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVEKGR 363 (510)
Q Consensus 303 ~~~--~-~~~~~~~---------------l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~ 363 (510)
+.. | +...+.. .+..+...|++++|...++++.+..... +..++..+...+...|++++|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 654 1 1112211 2333448899999999999999863111 4678888999999999999999
Q ss_pred HHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 046354 364 KTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQ 442 (510)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 442 (510)
..++++.+. .+.+...+..++..+.+.|++++|...++++.+..| +..++..+...|...|++++|...++++++..
T Consensus 238 ~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 238 DCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999875 344678899999999999999999999999876666 57789999999999999999999999999988
Q ss_pred CCC-----------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 443 PSS-----------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 443 p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|++ +..+..++.+|...|++++|..++++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 887 7789999999999999999999987444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-17 Score=152.26 Aligned_cols=342 Identities=12% Similarity=0.095 Sum_probs=156.4
Q ss_pred ccCCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHh
Q 046354 4 FGCTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDE 83 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 83 (510)
+-+.|++++|.+.++++.+| .+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|.+.++.
T Consensus 13 l~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45678899999999999655 49999999999999999999999653 6777999999999999999999998887
Q ss_pred hcc--CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh-----hHHHHHHHHHHHHhc
Q 046354 84 IYE--GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL-----EVISWTTMCTGLERN 156 (510)
Q Consensus 84 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a-----~~~~~~~l~~~~~~~ 156 (510)
..+ +++.+.+.|+.+|.+.|+++++.++++ .|+..+|..+...|...|.++.| ....|..++.++.+.
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~L 161 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 161 (449)
T ss_dssp ----------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 754 456789999999999999999888774 28888999999999999999999 667899999999999
Q ss_pred CchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 046354 157 AMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRF 236 (510)
Q Consensus 157 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 236 (510)
|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++......
T Consensus 162 g~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le- 237 (449)
T 1b89_A 162 GEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE- 237 (449)
T ss_dssp TCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-
T ss_pred ccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-
Confidence 9999999999998 488999999999999999999988877665 444445578999999999999999999986433
Q ss_pred CCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--------CCh
Q 046354 237 MPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--------KDV 308 (510)
Q Consensus 237 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~ 308 (510)
+-....|+-+-..+.+ -+.+++.+..+.|..-.. .+.
T Consensus 238 ~ah~~~ftel~il~~k-----------------------------------y~p~k~~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 238 RAHMGMFTELAILYSK-----------------------------------FKPQKMREHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp TCCHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHHHHSTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh-----------------------------------cCHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1222222222111111 344556666666654433 245
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
..|.-+...|...++++.|... |.++ ...-+...|..++.--....-+-+|..++- .. .|...+.|+.
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~-----~p~~l~~ll~ 351 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF-----KPLLLNDLLM 351 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH-----CGGGHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc-----CHHHHHHHHH
Confidence 6899999999999999998874 4443 122234455555544333333334444332 21 2333455555
Q ss_pred HHhhcCChHHHHHHHhhCC
Q 046354 388 ILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~ 406 (510)
++...=+...+.++|++.-
T Consensus 352 ~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 352 VLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHGGGCCHHHHHHHHHHTT
T ss_pred HHHhccCcHHHHHHHHHcC
Confidence 5555555555555555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=153.64 Aligned_cols=348 Identities=11% Similarity=0.040 Sum_probs=159.3
Q ss_pred hcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcc
Q 046354 37 RNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMP 116 (510)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 116 (510)
+.|++++|.++++++.. | .+|+.|..++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+..++..+
T Consensus 15 ~~~~ld~A~~fae~~~~--~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE--P--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC--h--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 67889999999999943 4 59999999999999999999999764 577799999999999999999999888777
Q ss_pred ccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 046354 117 LKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASEL 196 (510)
Q Consensus 117 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 196 (510)
+..+++.+.+.+ +.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...
T Consensus 89 k~~~~~~i~~~L---------------------i~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 89 KKARESYVETEL---------------------IFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT---CC----------------CTTTHHHH
T ss_pred HhCccchhHHHH---------------------HHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 654444444444 445566667777777765 47778999999999999999999999
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhh
Q 046354 197 FNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTY 276 (510)
Q Consensus 197 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (510)
|..+ ..|..++.++.+.|++++|.+.++++ .+..+|..++.+|
T Consensus 145 Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aC-------------------------- 187 (449)
T 1b89_A 145 YNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC-------------------------- 187 (449)
T ss_dssp HHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH--------------------------
T ss_pred HHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHH--------------------------
Confidence 9988 48999999999999999999999988 2567777777776
Q ss_pred hhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC
Q 046354 277 KCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356 (510)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 356 (510)
...|+++.|......+. .++.....++..|.+.|++++|..+++...... +.....|+.+..++++-
T Consensus 188 -----------v~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 188 -----------VDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp -----------HHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred -----------HHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 88889999988777765 344445568899999999999999999887543 44445677776666643
Q ss_pred --CcHHHHHHHHHHHHHhhCCCC------CcchhHhHHhHHhhcCChHHHHHHHhhCCCC-------------CCcHHHH
Q 046354 357 --GLVEKGRKTFNLMSRAYGFKP------RAEHYSCLADILRRAGQVKEAMRVVSKMPPH-------------ERDHVVL 415 (510)
Q Consensus 357 --g~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------~p~~~~~ 415 (510)
++..+.++.|. .+-+++| +...|.-++..|...++++.|....-+-+.. ..+...|
T Consensus 255 ~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~ely 331 (449)
T 1b89_A 255 KPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY 331 (449)
T ss_dssp CHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHH
T ss_pred CHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHH
Confidence 34444444443 3325555 5788999999999999999988766554322 2244555
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 416 GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 416 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
-..+..|... ...+..-+-..+ .|.- -+...+..+.+.|...-...++..+.
T Consensus 332 Ykai~fyl~~--~p~~l~~ll~~l--~~~l--d~~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 332 YRAIQFYLEF--KPLLLNDLLMVL--SPRL--DHTRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp HHHHHHHHHH--CGGGHHHHHHHH--GGGC--CHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred HHHHHHHHhc--CHHHHHHHHHHH--Hhcc--CcHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5555555421 122222222222 1110 02334444566666666666665555
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-17 Score=157.45 Aligned_cols=363 Identities=9% Similarity=-0.048 Sum_probs=204.1
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhcc-----------C-ChhhHHHHHHHHHcCCChHHHHHHHHhcccc---CCC
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYE-----------G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLK---LKN 121 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~ 121 (510)
....||.|...+...|++++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+. .++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788888888888888888888877632 2 2357888889999999999999888877653 010
Q ss_pred hhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHH--hcCchHHHHHHHhhCC---CCChhHHHHHHHH---HHhcCCHHHH
Q 046354 122 VVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLE--RNAMTKLAREYFVQMP---NKDIVAWNAMITA---YVDAGNMAQA 193 (510)
Q Consensus 122 ~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~---~~~~~~~~~li~~---~~~~g~~~~A 193 (510)
. ...+ ...++.....++. ..+++++|.+.|++.. +.++..+..+..+ +...|+.++|
T Consensus 130 ~-------------~~~~--~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 130 P-------------YRIE--SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp S-------------SCCC--CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred c-------------cchh--hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 0 0000 1112222222222 2356778888887766 3344445444444 3345666667
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHh
Q 046354 194 SELFNLMPQ---RNVWTWNAMIDRYAR----NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRL 266 (510)
Q Consensus 194 ~~~~~~~~~---~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 266 (510)
++.+++..+ .+..++..+...+.. .+++++|.+.+++.....
T Consensus 195 l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~------------------------------- 243 (472)
T 4g1t_A 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA------------------------------- 243 (472)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-------------------------------
Confidence 766665543 344455555444443 355667777777665422
Q ss_pred CCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C-ChhhHHHHHHHHHhc-------------------CCh
Q 046354 267 GFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-DVVSWTAMILAYSNH-------------------GHG 324 (510)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~-------------------g~~ 324 (510)
+....++..+...| ...|++++|...|++..+ | +..++..+...|... +..
T Consensus 244 --~~~~~~~~~lg~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (472)
T 4g1t_A 244 --PGVTDVLRSAAKFY-----RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELI 316 (472)
T ss_dssp --SSCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHH
T ss_pred --ccHHHHHHHHHHHH-----HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Confidence 22333344444455 677777777777776654 2 334555554444321 234
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcc----hhHhHHh-HHhhcCChHHHH
Q 046354 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE----HYSCLAD-ILRRAGQVKEAM 399 (510)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~ 399 (510)
+.|...++...+.. +.+..++..+...+...|++++|...|++..+. .|+.. .+..+.. .+...|++++|+
T Consensus 317 ~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 317 GHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 56666676666642 444556777777777788888888888777653 23221 1222222 223567778888
Q ss_pred HHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccc
Q 046354 400 RVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKV 479 (510)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 479 (510)
..|++..+..|+..... +....+..++++.++.+|+++.++..++.+|...|++++|++.|++..+--+..
T Consensus 393 ~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 77777765666543322 223445566777778889999999999999999999999999999888434444
Q ss_pred cc-eeEE
Q 046354 480 AS-FSQI 485 (510)
Q Consensus 480 p~-~~~~ 485 (510)
|+ .+|+
T Consensus 464 p~a~~~~ 470 (472)
T 4g1t_A 464 PSASSWN 470 (472)
T ss_dssp -------
T ss_pred CcHhhcC
Confidence 43 3454
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=161.32 Aligned_cols=159 Identities=13% Similarity=-0.020 Sum_probs=121.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
+..+...+...|++++|...++++.+.... ++..++..+...+...|++++|...++++.+. .+.+..++..++.+|
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATL 257 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 444577788888899999999888875311 15678888888888889999999999888874 344677888888899
Q ss_pred hhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS------------SSGAYVLSANVH 456 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~ 456 (510)
.+.|++++|...++++.+..| +..++..+...|...|++++|...|++++++.|+ +...+..++.++
T Consensus 258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 999999999999988876666 4678888888888999999999999999877776 356688888889
Q ss_pred HHcCCChHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKK 471 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~ 471 (510)
...|+.+.|.++.++
T Consensus 338 ~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 338 SLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHHh
Confidence 999998888877653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-18 Score=157.55 Aligned_cols=185 Identities=12% Similarity=0.067 Sum_probs=149.1
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc-----------hhHHHHHHhc
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE-----------ITFVGVLSDC 353 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~li~~~ 353 (510)
...|++++|...|++..+ .+..+|..+...|...|++++|...|+++.+.. |+. ..+..+...+
T Consensus 110 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 110 AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC------------------
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHH
Confidence 555666666666655543 346688999999999999999999999998753 332 2233457788
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~ 432 (510)
...|++++|..+++++.+.....+++.++..++..|.+.|++++|...++++.+..| +..+|..+...|...|++++|.
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998622222678899999999999999999999999886666 6779999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 433 YIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
..|+++++..|+++..+..++.+|...|++++|...++++.+
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998884
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-15 Score=151.31 Aligned_cols=381 Identities=9% Similarity=0.051 Sum_probs=265.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC----ChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR----NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 99 (510)
++.--...+++|+..|.+.+|+++++++.-... +...-+.|+.+..+. +.....+..+....-+ ..-+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 334445566777777777777777777763311 223444455555554 3344444444433222 33466667
Q ss_pred HcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHH
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNA 179 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 179 (510)
...|.+++|..+|++... ++. ..+. .+...+++++|.++.++. .++.+|..
T Consensus 1060 i~lglyEEAf~IYkKa~~--~~~----------------------A~~V---Lie~i~nldrAiE~Aerv--n~p~vWsq 1110 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV--NTS----------------------AVQV---LIEHIGNLDRAYEFAERC--NEPAVWSQ 1110 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC--HHH----------------------HHHH---HHHHHhhHHHHHHHHHhc--CCHHHHHH
Confidence 777888888888877643 110 0111 122567788888888766 34667888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHH
Q 046354 180 MITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259 (510)
Q Consensus 180 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 259 (510)
+..++...|++++|...|.+. .|...|..++.++.+.|++++|.+++...++..-.|...+ .+..++.+.......
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCHHHH
Confidence 888888888888888888665 5667777888888888888888888887776542222222 344444444322222
Q ss_pred HHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 046354 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT 339 (510)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 339 (510)
.... -.++...+..+...+ ...|++++|...|... ..|..+...|.+.|++++|.+.+++.
T Consensus 1187 e~fI----~~~n~ad~~~iGd~l-----e~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1187 EEFI----NGPNNAHIQQVGDRC-----YDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HHHH----hCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 2221 133445555677777 8999999999999985 47999999999999999999999875
Q ss_pred CCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHH
Q 046354 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGAL 418 (510)
Q Consensus 340 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 418 (510)
.+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++......|. ...|..|
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence 3558899999999999999998876543 2346667778999999999999999999999877663 3466666
Q ss_pred HHHHHh--hCCHHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHHcCCChHHHH
Q 046354 419 LGACRL--HGDVRMADYIGERLIELQP-----SSSGAYVLSANVHAARGEWDEFAQ 467 (510)
Q Consensus 419 ~~~~~~--~~~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 467 (510)
...|.+ -++..++.+.|..-....| .+...|..+..+|.+.|+|+.|..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 666655 4678888888887666655 566779999999999999999983
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-16 Score=151.57 Aligned_cols=381 Identities=13% Similarity=0.085 Sum_probs=256.6
Q ss_pred HHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChh
Q 046354 48 FRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVV 123 (510)
Q Consensus 48 ~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 123 (510)
|+...+..| +...|..++.. .+.|++++|..+|+.+.+ | +...|..++..+.+.|++++|..+|++.....|+..
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 344444556 67789888884 789999999999999966 3 456799999999999999999999999999878877
Q ss_pred hHHHHHHHH-HhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC------CCChhHHHHHHHHHHh---------c
Q 046354 124 SWTTVVLGC-AHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP------NKDIVAWNAMITAYVD---------A 187 (510)
Q Consensus 124 ~~~~ll~~~-~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~---------~ 187 (510)
.|...+... ...|+.+.+. +.+.++|+... .++...|...+....+ .
T Consensus 81 lw~~~~~~~~~~~~~~~~a~-----------------~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYK-----------------EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHH-----------------HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHHHHHHHHHHccchhhHH-----------------HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH
Confidence 777666432 2344443321 11222333321 2456677777776554 7
Q ss_pred CCHHHHHHHHhhCCC-CCh---hhHHHHHHHH-------------HhcCChHHHHHHHHHHH------HCC---CCCCHh
Q 046354 188 GNMAQASELFNLMPQ-RNV---WTWNAMIDRY-------------ARNGPEGAAMKLLNLMF------QSR---FMPNET 241 (510)
Q Consensus 188 g~~~~A~~~~~~~~~-~~~---~~~~~li~~~-------------~~~~~~~~A~~~~~~m~------~~g---~~p~~~ 241 (510)
|++++|..+|++..+ |.. ..|....... .+.++++.|..+++++. +.. ++|+..
T Consensus 144 ~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 144 QRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred hHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 889999999998776 432 2333322211 12334555555555421 111 122210
Q ss_pred -hHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccCh----hhHHHHhcccCC---CChhhHHH
Q 046354 242 -TCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDV----NSARLAFERLEA---KDVVSWTA 313 (510)
Q Consensus 242 -~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~a~~~~~~~~~---~~~~~~~~ 313 (510)
..... ...|...+.... ......++. ..+..+|++... .+...|..
T Consensus 224 ~~~~~~-------------------------~~~w~~~~~~e~-~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~ 277 (530)
T 2ooe_A 224 PQEAQQ-------------------------VDMWKKYIQWEK-SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYE 277 (530)
T ss_dssp CCHHHH-------------------------HHHHHHHHHHHH-HCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHH-------------------------HHHHHHHHHHHH-cCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 00000 011111111100 000111222 355566666654 35678888
Q ss_pred HHHHHHh-------cCChh-------hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-
Q 046354 314 MILAYSN-------HGHGF-------QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR- 378 (510)
Q Consensus 314 l~~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 378 (510)
++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+...|++++|..+|+++.+. .|+
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~ 354 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDID 354 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSC
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccC
Confidence 8888775 79987 89999999886322334667888888888999999999999999863 554
Q ss_pred c-chhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 379 A-EHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGA-CRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 379 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
+ ..|..++..+.+.|++++|.++|++..+..|. ...|...+.. +...|+.++|..+|+++++..|+++..+..++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 355 PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3 47888889999999999999999998866553 3333333322 3458999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHh
Q 046354 456 HAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~~~ 475 (510)
+.+.|+.++|+.+|++....
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHS
T ss_pred HHhCCCHhhHHHHHHHHHhc
Confidence 99999999999999988743
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-15 Score=147.80 Aligned_cols=361 Identities=14% Similarity=0.097 Sum_probs=281.9
Q ss_pred HHHHHHhccccCCChhHHHHHHHHHHh----cCChhhHHHHHHhhcc-CChhhHHHHHHHHHc----CCChHHHHHHHHh
Q 046354 44 AEALFRAMPESQRNIVAESAMIDGYVK----AGRVDEARKVFDEIYE-GNVYSWTSLISGYFK----ARQVDEGRRLFDR 114 (510)
Q Consensus 44 A~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 114 (510)
+...++...+ ..+...+..|...|.. .+++++|...|+...+ .+...+..|...|.. .++.++|.+.|++
T Consensus 26 ~~~~~~~~a~-~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 104 (490)
T 2xm6_A 26 NLEQLKQKAE-SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKK 104 (490)
T ss_dssp CHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 3455554444 2477788888888888 8999999999999865 466788889999988 8999999999999
Q ss_pred ccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHh----cCchHHHHHHHhhCC-CCChhHHHHHHHHHHh---
Q 046354 115 MPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER----NAMTKLAREYFVQMP-NKDIVAWNAMITAYVD--- 186 (510)
Q Consensus 115 m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~--- 186 (510)
..+. .+.. .+..+...|.. .+++++|.+.|++.. ..++..+..+...|..
T Consensus 105 a~~~-~~~~---------------------a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 105 AALK-GLPQ---------------------AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp HHHT-TCHH---------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HHHC-CCHH---------------------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 8762 2222 23334445555 678999999998877 5567788888888887
Q ss_pred -cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHH
Q 046354 187 -AGNMAQASELFNLMPQ-RNVWTWNAMIDRYAR----NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260 (510)
Q Consensus 187 -~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 260 (510)
.++.++|.+.|++..+ .+...+..+...|.. .+++++|.+.|++..+.|. ...+..
T Consensus 163 ~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~--------------- 224 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD---ELGQLH--------------- 224 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHH---------------
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHH---------------
Confidence 7899999999988765 577888889999988 8999999999999887652 111111
Q ss_pred HHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-CChhhHHHHHHHHHh----cCChhhHHHHHHHHH
Q 046354 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-KDVVSWTAMILAYSN----HGHGFQVFRLFARML 335 (510)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 335 (510)
+...|. ......++.++|...|++..+ .+...+..+...|.. .+++++|+..|++..
T Consensus 225 -----------------lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 225 -----------------LADMYY-FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp -----------------HHHHHH-HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred -----------------HHHHHH-cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 111220 000347889999999998766 566677788888888 899999999999998
Q ss_pred HcCCCCCchhHHHHHHhcCcC-----CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC---ChHHHHHHHhhCCC
Q 046354 336 KSGTKPDEITFVGVLSDCSHA-----GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG---QVKEAMRVVSKMPP 407 (510)
Q Consensus 336 ~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 407 (510)
+.| +...+..+...+... ++.++|..++++..+. + ++..+..+...|...| ++++|.+.|++..+
T Consensus 287 ~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 287 EQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 765 344566666666655 8999999999999875 3 4567777888887766 78999999998874
Q ss_pred CCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----cCCChHHHHHHHHHH
Q 046354 408 HERDHVVLGALLGACRL----HGDVRMADYIGERLIELQPSSSGAYVLSANVHAA----RGEWDEFAQVRKKME 473 (510)
Q Consensus 408 ~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 473 (510)
. .+...+..+...|.. .+++++|...|+++.+. .++..+..++.+|.. .++.++|..+|++..
T Consensus 360 ~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 360 K-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp T-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 3 567788889999988 79999999999999875 357889999999998 899999999999988
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=155.53 Aligned_cols=252 Identities=13% Similarity=0.010 Sum_probs=197.0
Q ss_pred HHHhcCCHHHHHH-HHhhCCC--C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhh
Q 046354 183 AYVDAGNMAQASE-LFNLMPQ--R-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254 (510)
Q Consensus 183 ~~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 254 (510)
++...|++++|.. .|++... | +...+..+...+.+.|++++|...|+++.+.. |+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~--------------- 96 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PK--------------- 96 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TT---------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC---------------
Confidence 3455689999998 8887654 2 35668899999999999999999999998753 22
Q ss_pred hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
+...+..+...+ ...|++++|...|++..+ .+..+|..+...|...|++++|...+
T Consensus 97 ----------------~~~~~~~l~~~~-----~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 97 ----------------HMEAWQYLGTTQ-----AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp ----------------CHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHH-----HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 222333444445 889999999999998765 46778999999999999999999999
Q ss_pred HHHHHcCCCCCch-hHHH---------------HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCCh
Q 046354 332 ARMLKSGTKPDEI-TFVG---------------VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395 (510)
Q Consensus 332 ~~m~~~g~~p~~~-~~~~---------------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (510)
+++.... |+.. .+.. .+..+...|++++|...++++.+.....++..++..++..+.+.|++
T Consensus 156 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~ 233 (368)
T 1fch_A 156 RDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 233 (368)
T ss_dssp HHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCH
Confidence 9999853 3332 2221 13333388999999999999987622222578889999999999999
Q ss_pred HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 396 KEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++|...++++.+..| +..++..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...++++..
T Consensus 234 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 234 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999876666 5779999999999999999999999999999999999999999999999999999999998873
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-15 Score=155.01 Aligned_cols=396 Identities=10% Similarity=0.065 Sum_probs=260.4
Q ss_pred CcccCCCChHHHHHHHhhcC-CCC-----hhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChh
Q 046354 2 SQFGCTGKVKEATKLFDEMS-QPD-----PVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVD 75 (510)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 75 (510)
++|...|.+.+|+++++.+. .|+ ....+.++....+. +..+..+...+... .+ ...+...+...|.++
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIANIAISNELFE 1066 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHHHHHHhCCCHH
Confidence 45778899999999999997 333 35566677766666 44555555555442 22 344778888899999
Q ss_pred hHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh--------hHHHHH
Q 046354 76 EARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL--------EVISWT 147 (510)
Q Consensus 76 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a--------~~~~~~ 147 (510)
+|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++...|++++| +...|.
T Consensus 1067 EAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~ 1138 (1630)
T 1xi4_A 1067 EAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYM 1138 (1630)
T ss_pred HHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHH
Confidence 99999999742 2222233322 678899999998877 3466777888888888888887 677788
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 225 (510)
.++.++.+.|++++|.+.+.... .+++...+.++.+|++.+++++...+. ..++...|..+...|...|++++|.
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 88888888888888888887765 344444556888888888888644443 3456667777888888888888888
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC
Q 046354 226 KLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA 305 (510)
Q Consensus 226 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 305 (510)
.+|... ..|..+ ...+ .+.|+++.|.+.+++.
T Consensus 1216 ~~Y~kA---------~ny~rL--------------------------------A~tL-----vkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRL--------------------------------ASTL-----VHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred HHHHhh---------hHHHHH--------------------------------HHHH-----HHhCCHHHHHHHHHHh--
Confidence 888875 133333 3334 6777777777777766
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHh
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSC 384 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 384 (510)
.+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++.... +.+ ...+|.-
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTE 1319 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHH
Confidence 3456777777777777777777665543 233445566777777777777777777766653 232 3344544
Q ss_pred HHhHHhh--cCChHHHHHHHhhCCCCCC------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh------------cCCC
Q 046354 385 LADILRR--AGQVKEAMRVVSKMPPHER------DHVVLGALLGACRLHGDVRMADYIGERLIE------------LQPS 444 (510)
Q Consensus 385 l~~~~~~--~g~~~~A~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~p~ 444 (510)
+..+|++ -++..++.+.|..-...+| +...|..+...|.+.|+++.|....-+-.. ..+.
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~ 1399 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 1399 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccc
Confidence 4444443 3455566666654443322 455677777777777777777632222111 1345
Q ss_pred CchhHHHHHHHHHHcC---------------CChHHHHHHH
Q 046354 445 SSGAYVLSANVHAARG---------------EWDEFAQVRK 470 (510)
Q Consensus 445 ~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 470 (510)
++..|...+..|...+ +.+.+.+++.
T Consensus 1400 n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 5666666666666555 6666666665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=158.29 Aligned_cols=271 Identities=11% Similarity=-0.022 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 046354 144 ISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYAR 217 (510)
Q Consensus 144 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 217 (510)
..+......+...|++++|.++++++. +.+...+..+..++...|++++|...|+++.+ .+..++..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 344555666667777777777776665 33455666666677777777777777666544 345566666666777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHH
Q 046354 218 NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSAR 297 (510)
Q Consensus 218 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 297 (510)
.|++++|...++++.... |+ +...+..+...
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~~~~~---------------- 132 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQ-------------------------------YEQLGSVNLQA---------------- 132 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TT-------------------------------TTTC-----------------------
T ss_pred cCCHHHHHHHHHHHHHhC--Cc-------------------------------cHHHHHHHhHH----------------
Confidence 777777777776665421 11 00000000000
Q ss_pred HHhcccCCCChhhHHHH-HH-HHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCC
Q 046354 298 LAFERLEAKDVVSWTAM-IL-AYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGF 375 (510)
Q Consensus 298 ~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 375 (510)
. ++......+ .. .+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .
T Consensus 133 -----~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~ 202 (327)
T 3cv0_A 133 -----D--VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--R 202 (327)
T ss_dssp --------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred -----H--HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--C
Confidence 0 000011111 22 3667788999999999998863 446678888889999999999999999999875 3
Q ss_pred CCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----------
Q 046354 376 KPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS---------- 444 (510)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------- 444 (510)
+.+...+..++..+...|++++|...++++.+..| +..++..+...+...|++++|...++++++..|+
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 282 (327)
T 3cv0_A 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchh
Confidence 44677888999999999999999999999876666 5778999999999999999999999999999998
Q ss_pred --CchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 445 --SSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 445 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++..+..++.++...|++++|..++++..
T Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 283 EATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred hcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 67789999999999999999999988554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=143.54 Aligned_cols=250 Identities=8% Similarity=0.023 Sum_probs=197.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhh
Q 046354 181 ITAYVDAGNMAQASELFNLMPQ--RN--VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLEN 256 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 256 (510)
++-....|++..|+..++.... |+ ......+..+|...|+++.|+..++.. -+|+..++..+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la--------- 72 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFA--------- 72 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHH---------
Confidence 4456778999999999988766 33 235566788999999999999766441 233333333333
Q ss_pred hHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC----C-ChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 257 MLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----K-DVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
..+ ...++.++|.+.++++.. | +...+..+...+...|++++|+..+
T Consensus 73 -----------------------~~~-----~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l 124 (291)
T 3mkr_A 73 -----------------------EYL-----ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL 124 (291)
T ss_dssp -----------------------HHH-----HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------HHH-----cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 333 788899999999998642 3 4567777889999999999999999
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchh---HhHHhHHhhcCChHHHHHHHhhCCCC
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY---SCLADILRRAGQVKEAMRVVSKMPPH 408 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (510)
++ +.+...+..++..+.+.|++++|.+.++.+.+. .|+.... ..++..+...|++++|..+|+++.+.
T Consensus 125 ~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 125 HQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp TT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 87 466778888999999999999999999999876 4654221 22334445569999999999999866
Q ss_pred CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChH-HHHHHHHHHHhhcccc
Q 046354 409 ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE-FAQVRKKMERRVKKVA 480 (510)
Q Consensus 409 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~p 480 (510)
.| +...++.+..++...|++++|+..++++++.+|+++.++..++.++...|+.++ +.++++++.+..|..|
T Consensus 196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 55 777999999999999999999999999999999999999999999999999986 5788887775444444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-17 Score=156.75 Aligned_cols=380 Identities=11% Similarity=0.016 Sum_probs=230.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhcccc---------CC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc-------
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPES---------QR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE------- 86 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---------~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------- 86 (510)
....|+.|...+...|++++|++.|++..+. .| ...+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987553 23 356788999999999999999999988733
Q ss_pred ----CChhhHHHHHHHHHc--CCChHHHHHHHHhccccCCCh-hhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCch
Q 046354 87 ----GNVYSWTSLISGYFK--ARQVDEGRRLFDRMPLKLKNV-VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMT 159 (510)
Q Consensus 87 ----~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 159 (510)
....++..+..++.. .+++++|...|++..+..|+. ..+..+..++. .+...++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~------------------~l~~~~~~ 191 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY------------------RLDNWPPS 191 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH------------------HHHHSCCC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------------HhcCchHH
Confidence 122456555555544 457999999999998875553 33333332221 12334555
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 046354 160 KLAREYFVQMP---NKDIVAWNAMITAYVD----AGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLN 229 (510)
Q Consensus 160 ~~a~~~~~~~~---~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 229 (510)
++|.+.+++.. +.+..++..+...+.. .|+.++|.+.+++... .+..++..+...|...|++++|...++
T Consensus 192 ~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 66666666654 4455666666655554 4677889999987654 467789999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHh-hhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---
Q 046354 230 LMFQSRFMPNETTCTSILTSC-EGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--- 305 (510)
Q Consensus 230 ~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--- 305 (510)
+..+. .|+......-+..+ ...... ..... ........ ...+..+.|...|++..+
T Consensus 272 ~al~~--~p~~~~~~~~lg~~y~~~~~~-------~~~~~------~~~~~~~~-----~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 272 KALEY--IPNNAYLHCQIGCCYRAKVFQ-------VMNLR------ENGMYGKR-----KLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHHHH-------HHHC------------CHH-----HHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHh--CCChHHHHHHHHHHHHHHHHH-------hhhHH------HHHHHHHH-----HHHhhHHHHHHHHHHHhhcCC
Confidence 99873 45433322222211 100000 00000 00000000 122345667777766544
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch--hHHHHHH-hcCcCCcHHHHHHHHHHHHHhhCCCCCcchh
Q 046354 306 KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI--TFVGVLS-DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHY 382 (510)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (510)
.+..++..+...|...|++++|...|++..+....|... .+..+.. .....|+.++|+..+++..+ +.|+....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHH
Confidence 455688999999999999999999999998854333221 1222222 23467999999999999885 35553322
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
. +..+.+.+++++..+..| +..+|..+...|...|++++|.+.|+++++..|.+|.+..-+|
T Consensus 409 ~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 409 E---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp H---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred H---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2 223344455555443445 6779999999999999999999999999999999887765544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=147.48 Aligned_cols=261 Identities=8% Similarity=-0.037 Sum_probs=202.8
Q ss_pred ChhhHHHHHHHHHhcCCcchh-------------hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHH
Q 046354 121 NVVSWTTVVLGCAHNGLIAKL-------------EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAY 184 (510)
Q Consensus 121 ~~~~~~~ll~~~~~~~~~~~a-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~ 184 (510)
+...+..+...+...|+++.+ +...+..+...+...|++++|.+.++++. +.+..++..+..+|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 344567777888888988887 56778889999999999999999999987 55678899999999
Q ss_pred HhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHH
Q 046354 185 VDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHA 261 (510)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 261 (510)
...|++++|...++++.+ |+ ...+..+...+ |+.....
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~----------------- 140 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLN----------------- 140 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHH-----------------
Confidence 999999999999988765 22 22222221110 1100000
Q ss_pred HHHHhCCCcchhhhhhh-hh-hccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046354 262 LAIRLGFEQETSLTYKC-TC-HYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLK 336 (510)
Q Consensus 262 ~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 336 (510)
.+ .. .+ ...|++++|...++++.+ .+...+..+...|...|++++|...++++.+
T Consensus 141 ---------------~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 141 ---------------VQSEDFFF-----AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp --------------------CCT-----TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------HHHHhHHH-----HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 01 00 12 778899999999988765 3567899999999999999999999999988
Q ss_pred cCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-----
Q 046354 337 SGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----- 411 (510)
Q Consensus 337 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----- 411 (510)
.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++.+..|+
T Consensus 201 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 201 LR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 63 445678889999999999999999999999875 3446788899999999999999999999988655454
Q ss_pred --------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 412 --------HVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 412 --------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
...|..+...+...|++++|..++++.++..|
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 66889999999999999999999987764443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-17 Score=164.93 Aligned_cols=146 Identities=14% Similarity=0.163 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMP-------QRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSI 246 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 246 (510)
..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt- 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA- 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH-
Confidence 4589999999999999999999997753 38999999999999999999999999999999999888766555
Q ss_pred HHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCCh-h
Q 046354 247 LTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHG-F 325 (510)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~ 325 (510)
+|.++++.|+. +
T Consensus 206 -------------------------------------------------------------------LI~glcK~G~~~e 218 (1134)
T 3spa_A 206 -------------------------------------------------------------------ALQCMGRQDQDAG 218 (1134)
T ss_dssp -------------------------------------------------------------------HHHHHHHHTCCHH
T ss_pred -------------------------------------------------------------------HHHHHHhCCCcHH
Confidence 45567787874 7
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC------cchhHhHHhHHhhcC
Q 046354 326 QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR------AEHYSCLADILRRAG 393 (510)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 393 (510)
+|.++|++|.+.|+.||..+|++++.++.+ +..++..+++.. ++.|+ ..+...|.+.|.+.+
T Consensus 219 ~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 219 TIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 899999999999999999999998865544 455555666644 45544 445556677777655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-16 Score=133.05 Aligned_cols=197 Identities=12% Similarity=-0.020 Sum_probs=157.5
Q ss_pred CcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchh
Q 046354 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEIT 345 (510)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 345 (510)
+++...+..+...+ ...|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...
T Consensus 2 p~~~~~~~~lg~~~-----~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQL-----YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHH-----HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 34555666667777 899999999999998776 356789999999999999999999999999863 445568
Q ss_pred HHHHHHhcCcC-----------CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHH
Q 046354 346 FVGVLSDCSHA-----------GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVV 414 (510)
Q Consensus 346 ~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (510)
+..+...+... |++++|...+++..+. .+.+...+..+..++...|++++|+..|++..+...+...
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Confidence 88888888888 9999999999999875 2335778889999999999999999999988754567778
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 415 LGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..+...+...|++++|...|+++++.+|+++..+..++.++...|++++|+..+++.-
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=133.04 Aligned_cols=226 Identities=15% Similarity=0.042 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ--RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
..+..+...+...|++++|...|++..+ .+..+|..+..++...|++++|...+++..+.. |+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--ccc------------
Confidence 4566667777777777777777765533 556667777777777777777777777664311 000
Q ss_pred hhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 046354 253 MLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFA 332 (510)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 332 (510)
.+ +.. .....|..+...|...|++++|...|+
T Consensus 72 ----------------~~---------------------~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 103 (258)
T 3uq3_A 72 ----------------RA---------------------DYK-----------VISKSFARIGNAYHKLGDLKKTIEYYQ 103 (258)
T ss_dssp ----------------TC---------------------CHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------cc---------------------chH-----------HHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 00 000 013567788889999999999999999
Q ss_pred HHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-c
Q 046354 333 RMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-D 411 (510)
Q Consensus 333 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~ 411 (510)
+..+. .|+.. .+...|++++|...++.+... .+.+...+..++..+...|++++|...++++.+..| +
T Consensus 104 ~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 104 KSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 99884 45533 345568899999999998863 333567888899999999999999999999876656 6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...+++..
T Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999887
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=158.23 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=113.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhh
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQS---RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCH 281 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (510)
..+||++|++|++.|+.++|.++|.+|.+. |+.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-------------------------------------------- 162 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-------------------------------------------- 162 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT--------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC--------------------------------------------
Confidence 368999999999999999999999888642 444
Q ss_pred ccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc-HH
Q 046354 282 YVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL-VE 360 (510)
Q Consensus 282 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~ 360 (510)
||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.++++.|+ .+
T Consensus 163 ------------------------PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e 218 (1134)
T 3spa_A 163 ------------------------LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218 (1134)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHH
T ss_pred ------------------------CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHH
Confidence 45667788888999999999999999999999999999999999999999998 47
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhC
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKM 405 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (510)
.|.++|++|.+. |+.||..+|++++....+.+-++.+.++...+
T Consensus 219 ~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 219 TIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 899999999998 99999999999998887765555555543333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.6e-15 Score=129.48 Aligned_cols=232 Identities=12% Similarity=-0.045 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC--------hhhHHH
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMP--NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--RN--------VWTWNA 210 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~ 210 (510)
...+..+...+...|++++|.+.|+++. ..+..++..+..+|...|++++|...+++..+ |+ ..+|..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4567778889999999999999998876 46778899999999999999999999998875 22 578899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccc
Q 046354 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290 (510)
Q Consensus 211 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (510)
+...+...|++++|...|+++.... |+.
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------------------------------------------------- 112 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------------------------------------------------- 112 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------------------
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------------------
Confidence 9999999999999999999986632 221
Q ss_pred cChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHH
Q 046354 291 LDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 370 (510)
..+...|++++|...++++.... +.+...+..+...+...|++++|...++++.
T Consensus 113 -------------------------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 166 (258)
T 3uq3_A 113 -------------------------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMI 166 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 12334455666666666666531 2233456666666777777777777777776
Q ss_pred HhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------C
Q 046354 371 RAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQ------P 443 (510)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p 443 (510)
+. .+.++..+..++..+.+.|++++|...+++..+..| +...|..+...+...|++++|...++++++.. |
T Consensus 167 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p 244 (258)
T 3uq3_A 167 KR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS 244 (258)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCC
Confidence 64 233566777788888888888888888887765555 46678888888889999999999999998887 7
Q ss_pred CCchhHHHHHH
Q 046354 444 SSSGAYVLSAN 454 (510)
Q Consensus 444 ~~~~~~~~l~~ 454 (510)
++...+..+..
T Consensus 245 ~~~~~~~~l~~ 255 (258)
T 3uq3_A 245 SAREIDQLYYK 255 (258)
T ss_dssp THHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 76665555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-15 Score=130.80 Aligned_cols=174 Identities=7% Similarity=-0.121 Sum_probs=130.0
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|++++|...|++... .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|..
T Consensus 88 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 344444444444444332 24567888999999999999999999999985 4665555555555667799999999
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-----HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-----HVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
.++..... .+++...+ .++..+...++.++|...+++..+..|+ ..++..+...|...|++++|...|++++
T Consensus 166 ~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 166 VLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99888874 34444444 4777788888999999999998866553 5688889999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 440 ELQPSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
+.+|++...+ +.++...|++++|++.+
T Consensus 243 ~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred hCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 9999875444 66788889999988775
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=128.56 Aligned_cols=150 Identities=11% Similarity=-0.036 Sum_probs=94.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
..+|..+...|...|++++|...|++..+. .+.+...+..+...+...+++++|...++++.+. .+.+...+..+..
T Consensus 108 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~ 184 (272)
T 3u4t_A 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRAR 184 (272)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 345666667777777777777777776654 1223344544441333344777777777777764 2234556666667
Q ss_pred HHhhcCC---hHHHHHHHhhCCCC---CCc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 388 ILRRAGQ---VKEAMRVVSKMPPH---ERD------HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 388 ~~~~~g~---~~~A~~~~~~~~~~---~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
++...|+ +++|...++++.+. .|+ ..+|..+...|...|++++|...++++++++|+++.....+..+
T Consensus 185 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 185 ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 7766676 66666666655432 233 24677778888888999999999999999999888777777666
Q ss_pred HHHcC
Q 046354 456 HAARG 460 (510)
Q Consensus 456 ~~~~g 460 (510)
....+
T Consensus 265 ~~~~~ 269 (272)
T 3u4t_A 265 LEHHH 269 (272)
T ss_dssp -----
T ss_pred hcccc
Confidence 55443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=128.97 Aligned_cols=245 Identities=9% Similarity=0.065 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCC-HHHHHHHHhhCCC---CChhhHHHHHHH
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGN-MAQASELFNLMPQ---RNVWTWNAMIDR 214 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 214 (510)
...++..+...+...|++++|++.++++. +.+..+|+.+..++...|+ +++|+..|+++.. .+...|+.+..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 44555566666666777777777777665 3445566667777777775 7777777766654 345666777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChh
Q 046354 215 YARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVN 294 (510)
Q Consensus 215 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 294 (510)
+...|++++|+..|++++... |
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld--P-------------------------------------------------------- 197 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD--A-------------------------------------------------------- 197 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC--T--------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHHHHHhC--c--------------------------------------------------------
Confidence 777777777777776664421 1
Q ss_pred hHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc-CCcHHHH-----HHHHHH
Q 046354 295 SARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH-AGLVEKG-----RKTFNL 368 (510)
Q Consensus 295 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a-----~~~~~~ 368 (510)
.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++| +..+++
T Consensus 198 -----------~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~ 265 (382)
T 2h6f_A 198 -----------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265 (382)
T ss_dssp -----------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred -----------cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 245677778888888999999999999998863 3455678888888877 5554666 477888
Q ss_pred HHHhhCCCCCcchhHhHHhHHhhcC--ChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC---------CHHHHHHHHH
Q 046354 369 MSRAYGFKPRAEHYSCLADILRRAG--QVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG---------DVRMADYIGE 436 (510)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~---------~~~~A~~~~~ 436 (510)
..+. -+-+...|..+..++...| ++++|.+.+.++ +..| +...+..++..|.+.| ..++|..+|+
T Consensus 266 Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 266 MIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp HHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 8764 2335678888888888888 689999988888 5555 5678888888888764 3589999999
Q ss_pred HH-HhcCCCCchhHHHHHHHHHHc
Q 046354 437 RL-IELQPSSSGAYVLSANVHAAR 459 (510)
Q Consensus 437 ~~-~~~~p~~~~~~~~l~~~~~~~ 459 (510)
++ .+++|.....|..++..+...
T Consensus 343 ~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 343 ILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHH
Confidence 99 899999988888888876653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-14 Score=125.82 Aligned_cols=201 Identities=9% Similarity=0.007 Sum_probs=173.8
Q ss_pred hhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH
Q 046354 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348 (510)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 348 (510)
...+..+...+ ...|++++|...|+++.+ .+...|..+...|...|++++|...++++.+.. +.+...+..
T Consensus 37 ~~~~~~~a~~~-----~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGY-----LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHH-----HHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHH
Confidence 45566677777 889999999999998765 456788999999999999999999999998863 446678888
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG 426 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 426 (510)
+...+...|++++|.++++++.+. +..| +...+..++..+...|++++|...++++.+..| +...+..+...+...|
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 899999999999999999999862 3445 567788899999999999999999999876666 5778899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccc
Q 046354 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKV 479 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 479 (510)
++++|...++++++..|+++..+..++.++...|++++|.++++++.+..+..
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999887444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=126.35 Aligned_cols=196 Identities=12% Similarity=0.052 Sum_probs=157.3
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
....+..+...+ ...|++++|...|++..+ .+...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 22 ~~~~~~~~a~~~-----~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 22 ASMTGGQQMGRG-----SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp -------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHH-----HHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 344455566666 889999999999998865 356788889999999999999999999998863 44667888
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG 426 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 426 (510)
.+...+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|...++++.+..| +...+..+...+...|
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence 8889999999999999999999875 345677888999999999999999999999876655 6778899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 427 DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++++|...++++++..|+++..+..++.+|...|++++|...++++.+
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999998874
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6e-14 Score=117.38 Aligned_cols=166 Identities=15% Similarity=0.069 Sum_probs=146.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 386 (510)
++..|..+...|...|++++|+..|++..+.. +-+...+..+...+...|++++|...++..... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 56678999999999999999999999999863 445568888899999999999999999999874 344567777888
Q ss_pred hHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHH
Q 046354 387 DILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (510)
..+...++++.|...+.+..+..| +...+..+...+...|++++|+..|+++++.+|+++.++..++.+|...|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 899999999999999998876666 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 046354 466 AQVRKKMERR 475 (510)
Q Consensus 466 ~~~~~~~~~~ 475 (510)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999987643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-14 Score=122.13 Aligned_cols=201 Identities=11% Similarity=-0.000 Sum_probs=171.8
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
+...+..+...+ ...|++++|...|++..+ .+...|..+...|...|++++|...++++.+.. +.+..++.
T Consensus 7 ~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 80 (225)
T 2vq2_A 7 VSNIKTQLAMEY-----MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINN 80 (225)
T ss_dssp HHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHH
Confidence 344556666666 889999999999998765 456789999999999999999999999998863 45667888
Q ss_pred HHHHhcCcC-CcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 348 GVLSDCSHA-GLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 348 ~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
.+...+... |++++|...++.+.+. +..| +...+..++..+...|++++|...++++.+..| +...+..+...+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 899999999 9999999999999873 3344 357788899999999999999999998876666 57788999999999
Q ss_pred hCCHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 425 HGDVRMADYIGERLIELQP-SSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
.|++++|...++++++..| +++..+..++..+...|+.++|..+++.+.+..+.
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999 88888999999999999999999999988744443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-14 Score=120.60 Aligned_cols=196 Identities=13% Similarity=0.028 Sum_probs=136.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 171 NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
++++..+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+. .|+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~------- 72 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRY------- 72 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC-------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc-------
Confidence 35667788888888999999999999988765 45677888888899999999999999888663 2332
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhc------
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH------ 321 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~------ 321 (510)
...|..+...+...
T Consensus 73 ------------------------------------------------------------~~a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 73 ------------------------------------------------------------LGGYMVLSEAYVALYRQAED 92 (217)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHHHHTCSS
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHhhhhhhh
Confidence 22233333334444
Q ss_pred -----CChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChH
Q 046354 322 -----GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVK 396 (510)
Q Consensus 322 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 396 (510)
|++++|+..|++..+.. +-+...+..+...+...|++++|...|+++.+. . .++..+..+..+|...|+++
T Consensus 93 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHH
T ss_pred hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHH
Confidence 88888888888888752 334557777778888888888888888888886 4 67778888888888889999
Q ss_pred HHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 397 EAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 397 ~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+|...+++..+..| +...+..+...+...|++++|...+++..
T Consensus 169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 98888888876666 56677888888888889888888888764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=117.61 Aligned_cols=220 Identities=9% Similarity=-0.036 Sum_probs=159.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 173 DIVAWNAMITAYVDAGNMAQASELFNLMPQ-RNVWTWNAMIDRYAR----NGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
++.++..+...|...|++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 445556666666666677776666665554 234556666666666 666777766666664432
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHh----cCC
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN----HGH 323 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 323 (510)
+..++..+...|.. .++
T Consensus 73 -----------------------------------------------------------~~~a~~~lg~~~~~g~~~~~~ 93 (273)
T 1ouv_A 73 -----------------------------------------------------------YSNGCHLLGNLYYSGQGVSQN 93 (273)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHHTSSSCCC
T ss_pred -----------------------------------------------------------CHHHHHHHHHHHhCCCCcccC
Confidence 33445556666777 788
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc----CCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCCh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSH----AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQV 395 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 395 (510)
+++|+..|++..+.+ +...+..+...+.. .+++++|..++++..+. + ++..+..+...|.. .+++
T Consensus 94 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 94 TNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCH
Confidence 888888888887764 55667777777776 88888888888888774 3 45666777777777 8888
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----cCCChHHHH
Q 046354 396 KEAMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMADYIGERLIELQPSSSGAYVLSANVHAA----RGEWDEFAQ 467 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~ 467 (510)
++|...+++..+. .+...+..+...|.. .+++++|...++++.+..| +..+..++.+|.. .|++++|.+
T Consensus 167 ~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 167 KKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 8888888877633 345677778888888 8899999999998887765 5678888888888 889999999
Q ss_pred HHHHHH
Q 046354 468 VRKKME 473 (510)
Q Consensus 468 ~~~~~~ 473 (510)
++++..
T Consensus 244 ~~~~a~ 249 (273)
T 1ouv_A 244 NFKKGC 249 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998777
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.4e-14 Score=124.23 Aligned_cols=187 Identities=10% Similarity=-0.074 Sum_probs=146.2
Q ss_pred ccccChhhHHHHhcccCC--CC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLEA--KD----VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 361 (510)
...|++++|...|++..+ ++ ...|..+...|...|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 48 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 48 YELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHH
Confidence 566666666666665544 22 2348888999999999999999999999863 4456788899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCC---HHHHHHHHHH
Q 046354 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGD---VRMADYIGER 437 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~---~~~A~~~~~~ 437 (510)
|...+++..+. .+.++..+..+...+...+++++|.+.++++.+..| +...+..+...+...|+ +++|...+++
T Consensus 127 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 99999999863 333566777777344445699999999999887767 46678888888888888 8889999999
Q ss_pred HHhcC---CCC-----chhHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 438 LIELQ---PSS-----SGAYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 438 ~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
+++.. |+. ...|..++.+|...|++++|..++++...-.|
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 98665 442 14688899999999999999999998874333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=126.70 Aligned_cols=170 Identities=9% Similarity=0.005 Sum_probs=136.1
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|++++|...|++..+ .+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 444555555555544432 345678888999999999999999999998864 4566788888899999999999999
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
.++++.+. .+.+...+..++..+.+.|++++|...++++.+..| +..++..+...+...|++++|...++++++..|
T Consensus 147 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 147 YLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999875 344677888999999999999999999998876655 577899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcC
Q 046354 444 SSSGAYVLSANVHAARG 460 (510)
Q Consensus 444 ~~~~~~~~l~~~~~~~g 460 (510)
+++..+..++.+....|
T Consensus 225 ~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 225 DHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TCHHHHHHHTC------
T ss_pred chHHHHHHHHHHHhhcc
Confidence 99888877766554433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=130.98 Aligned_cols=378 Identities=10% Similarity=0.013 Sum_probs=236.3
Q ss_pred HHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCCh---hhHHHHHHhhccCChhhHHHHHHHHHcCC----
Q 046354 31 MITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRV---DEARKVFDEIYEGNVYSWTSLISGYFKAR---- 103 (510)
Q Consensus 31 li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g---- 103 (510)
+...+.+.|++++|...|++..+. .+...+..|...|...|+. ++|...|+...+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 566677889999999999988765 2445555566666777777 89999998887777777888877565555
Q ss_pred -ChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHH
Q 046354 104 -QVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMI 181 (510)
Q Consensus 104 -~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li 181 (510)
++++|...|++..+. .+...+..+...|...+..+.+ ..+.+.+.... ..++.....+.
T Consensus 88 ~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~~------------------~~a~~~~~~a~~~g~~~a~~~Lg 148 (452)
T 3e4b_A 88 AEHHEAESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFPN------------------VNAQQQISQWQAAGYPEAGLAQV 148 (452)
T ss_dssp HHHHHHHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCTT------------------CCHHHHHHHHHHHTCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCC------------------HHHHHHHHHHHHCCCHHHHHHHH
Confidence 778899999888774 2333555566555554443321 11222222222 24556777788
Q ss_pred HHHHhcCC----HHHHHHHHhhCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhh
Q 046354 182 TAYVDAGN----MAQASELFNLMPQRNVWTWNAMIDRYARNG---PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGML 254 (510)
Q Consensus 182 ~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 254 (510)
..|...+. .+.+..+++.....++..+..|...|...| +.++|++.|++..+.|.......++
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~---------- 218 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDS---------- 218 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHH----------
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHH----------
Confidence 88888874 555666677767667778999999999999 9999999999998877433221111
Q ss_pred hhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHH-H--HhcCChhhHHHHH
Q 046354 255 ENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA-Y--SNHGHGFQVFRLF 331 (510)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~ 331 (510)
+..+|. ......++.++|...|++....+...+..+... | ...+++++|+..|
T Consensus 219 -----------------------Lg~~y~-~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 219 -----------------------VARVLG-DATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp -----------------------HHHHHT-CGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred -----------------------HHHHHh-CCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 111220 000334789999999998884456677777776 4 4688999999999
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCc----CCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCChHHHHHHHh
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSH----AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQVKEAMRVVS 403 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 403 (510)
++..+.| +...+..+...|.. ..++++|..+|++.. +.++..+..|...|.. ..++++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 9999876 45556666655552 239999999998875 3466777778877766 348999999999
Q ss_pred hCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HHcCCChHHHHHHHHHH
Q 046354 404 KMPPHERDHVVLGALLGACRL----HGDVRMADYIGERLIELQPSSSGAYVLSANVH--AARGEWDEFAQVRKKME 473 (510)
Q Consensus 404 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 473 (510)
+..+. -+......|...|.. ..|.++|...|+++.+..+.. ....+..+. ...++..+|.++.++-+
T Consensus 347 ~Aa~~-g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 347 TAARN-GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTT-TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhh-ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88733 245556667777664 459999999999998765543 333333332 22335666777776655
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=120.94 Aligned_cols=206 Identities=11% Similarity=0.033 Sum_probs=164.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccc
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (510)
...|..+...+...|++++|...|+++.+.. |+ +...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~-------------------------------~~~~~~~la~~~-- 81 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS-------------------------------SADAHAALAVVF-- 81 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-------------------------------hHHHHHHHHHHH--
Confidence 4567777788888888888888888876532 21 222333334444
Q ss_pred cccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-CchhHHHHHHhcCcCCcHH
Q 046354 285 WDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP-DEITFVGVLSDCSHAGLVE 360 (510)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~ 360 (510)
...|++++|...|++..+ .+...|..+...|...|++++|..+++++...+..| +...+..+...+...|+++
T Consensus 82 ---~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 158 (252)
T 2ho1_A 82 ---QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158 (252)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHH
T ss_pred ---HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHH
Confidence 777888888888877654 356788889999999999999999999998733445 4457788888899999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+|...++++.+. .+.+...+..++..+...|++++|...++++.+..| +...+..+...+...|++++|.+.+++++
T Consensus 159 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 159 QAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999875 244677888999999999999999999999876655 66688888889999999999999999999
Q ss_pred hcCCCCchhHH
Q 046354 440 ELQPSSSGAYV 450 (510)
Q Consensus 440 ~~~p~~~~~~~ 450 (510)
+..|+++....
T Consensus 237 ~~~p~~~~~~~ 247 (252)
T 2ho1_A 237 RLYPGSLEYQE 247 (252)
T ss_dssp HHCTTSHHHHH
T ss_pred HHCCCCHHHHH
Confidence 99999876544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-14 Score=131.28 Aligned_cols=226 Identities=8% Similarity=-0.035 Sum_probs=181.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccc
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (510)
...|+.+...+.+.|++++|+..+++++.. .|+ +...+..+...+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~-------------------------------~~~a~~~~g~~l-- 141 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAA-------------------------------NYTVWHFRRVLL-- 141 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT-------------------------------CHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--Ccc-------------------------------CHHHHHHHHHHH--
Confidence 456777777888888888888888887663 232 223333344444
Q ss_pred cccccccC-hhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHH
Q 046354 285 WDWGFQLD-VNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE 360 (510)
Q Consensus 285 ~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 360 (510)
...|+ +++|...|++... .+...|..+..++...|++++|+..|+++++.. +-+...|..+..++...|+++
T Consensus 142 ---~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 142 ---KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp ---HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCT
T ss_pred ---HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChH
Confidence 66775 8888888887765 456789999999999999999999999999863 445678999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhh-cCChHHH-----HHHHhhCCCCCC-cHHHHHHHHHHHHhhC--CHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRR-AGQVKEA-----MRVVSKMPPHER-DHVVLGALLGACRLHG--DVRMA 431 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~p-~~~~~~~l~~~~~~~~--~~~~A 431 (510)
+|+..++++.+. -+-+...|+.+..++.+ .|..++| +..+++.....| +...|..+...+...| ++++|
T Consensus 218 eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 218 NELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp THHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHH
Confidence 999999999975 23467889999999998 6666888 478888876777 6678999998888887 68999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHcC--------C-ChHHHHHHHHH
Q 046354 432 DYIGERLIELQPSSSGAYVLSANVHAARG--------E-WDEFAQVRKKM 472 (510)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~ 472 (510)
...++++ +.+|+++..+..++.+|.+.| + .++|+++++++
T Consensus 296 ~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 296 LNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 9999998 899999999999999999975 2 58999999988
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.4e-13 Score=117.80 Aligned_cols=225 Identities=10% Similarity=-0.017 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHH
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVD----AGNMAQASELFNLMPQ-RNVWTWNAMIDRYA 216 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~ 216 (510)
+.++..+...+...|++++|.+.|++.. +.+...+..+...|.. .|++++|...|++..+ .+...+..+...|.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4566777888889999999999999887 4566788889999999 9999999999998765 57788899999999
Q ss_pred h----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccC
Q 046354 217 R----NGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLD 292 (510)
Q Consensus 217 ~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 292 (510)
. .+++++|...|++..+.+
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~~--------------------------------------------------------- 108 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDLK--------------------------------------------------------- 108 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---------------------------------------------------------
T ss_pred CCCCcccCHHHHHHHHHHHHHcC---------------------------------------------------------
Confidence 9 999999999999886543
Q ss_pred hhhHHHHhcccCCCChhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc----CCcHHHHHH
Q 046354 293 VNSARLAFERLEAKDVVSWTAMILAYSN----HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH----AGLVEKGRK 364 (510)
Q Consensus 293 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~ 364 (510)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|..
T Consensus 109 --------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 109 --------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp --------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred --------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 22345556666777 788999999999888865 44566666666665 889999999
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhh----cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHH
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRR----AGQVKEAMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMADYIGE 436 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~ 436 (510)
++++..+. + ++..+..+...|.. .+++++|...+++..+..| ...+..+...|.. .+++++|...|+
T Consensus 172 ~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 172 SYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFK 246 (273)
T ss_dssp HHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred HHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 99998874 2 45677788888888 9999999999998875544 6677888888888 899999999999
Q ss_pred HHHhcCCCCc
Q 046354 437 RLIELQPSSS 446 (510)
Q Consensus 437 ~~~~~~p~~~ 446 (510)
++.+..|+++
T Consensus 247 ~a~~~~~~~a 256 (273)
T 1ouv_A 247 KGCKLGAKGA 256 (273)
T ss_dssp HHHHHTCHHH
T ss_pred HHHHcCCHHH
Confidence 9999888754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.4e-14 Score=132.38 Aligned_cols=268 Identities=12% Similarity=0.035 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCC--CCC-h----hHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CChh
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMP--NKD-I----VAWNAMITAYVDAGNMAQASELFNLMPQ---------RNVW 206 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~ 206 (510)
...+..+...+...|++++|.+.|+++. .|+ . .++..+..+|...|++++|...|++..+ ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444556677788888888888888776 333 2 3677778888888888888888776543 2345
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccc
Q 046354 207 TWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWD 286 (510)
Q Consensus 207 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (510)
++..+...|...|++++|...+++...... ..+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~------------------- 160 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR----------------------------QLG------------------- 160 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HHT-------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------------------------Hhh-------------------
Confidence 677778888888888888888877644100 000
Q ss_pred cccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCC-----------------hhhHHHHHHHHHHc----CCCC-Cch
Q 046354 287 WGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH-----------------GFQVFRLFARMLKS----GTKP-DEI 344 (510)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m~~~----g~~p-~~~ 344 (510)
+. .....++..+...|...|+ +++|...+++..+. +..| ...
T Consensus 161 -----~~-----------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (411)
T 4a1s_A 161 -----DR-----------LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224 (411)
T ss_dssp -----CH-----------HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred -----ch-----------HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 00 0012245555566666666 66676666665432 1111 123
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------cHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-------DHV 413 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~ 413 (510)
++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++..+..| ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666677777888888888888777654211111 22667788888888888888888877654322 245
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQPSS------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|..++++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 77788888889999999999999988654432 3368888999999999999999998876
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=131.68 Aligned_cols=226 Identities=12% Similarity=-0.004 Sum_probs=157.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHH
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMPQ-----RN----VWTWNAMIDRYARNGP--------------------EGAA 224 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A 224 (510)
..++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566677778888888888877776654 22 3467778888888888 6777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccC
Q 046354 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304 (510)
Q Consensus 225 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 304 (510)
...+++... ++....
T Consensus 167 ~~~~~~al~-----------------------------------------------------------------~~~~~~ 181 (406)
T 3sf4_A 167 VDFYEENLS-----------------------------------------------------------------LVTALG 181 (406)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------HHHHTT
T ss_pred HHHHHHHHH-----------------------------------------------------------------HHHhcc
Confidence 666665533 111111
Q ss_pred C--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCC----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC
Q 046354 305 A--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPD----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 305 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (510)
. ....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+...-.+
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 1 0123566777788888888888888888765310 111 12677777888889999999999888775421112
Q ss_pred C----cchhHhHHhHHhhcCChHHHHHHHhhCCCC---CCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC---
Q 046354 378 R----AEHYSCLADILRRAGQVKEAMRVVSKMPPH---ERD----HVVLGALLGACRLHGDVRMADYIGERLIELQP--- 443 (510)
Q Consensus 378 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--- 443 (510)
+ ..++..+...|...|++++|...+++..+. .++ ..++..+...|...|++++|...++++++..+
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2 456778888999999999999998877543 111 45778888899999999999999999986533
Q ss_pred ---CCchhHHHHHHHHHHcCCChH
Q 046354 444 ---SSSGAYVLSANVHAARGEWDE 464 (510)
Q Consensus 444 ---~~~~~~~~l~~~~~~~g~~~~ 464 (510)
.....+..++.++...|+...
T Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 342 DKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcchhHHHHHHHHHHHHhhHhHH
Confidence 224458888999999987644
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-13 Score=114.73 Aligned_cols=208 Identities=13% Similarity=0.013 Sum_probs=154.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccc
Q 046354 205 VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVF 284 (510)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 284 (510)
...|..+...+...|++++|...++++.+.. |+ +...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~l~~~~-- 52 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK-------------------------------NELAWLVRAEIY-- 52 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc-------------------------------chHHHHHHHHHH--
Confidence 4456666666666677777766666665422 11 111222233333
Q ss_pred cccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhc-CChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcCcCCcH
Q 046354 285 WDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNH-GHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCSHAGLV 359 (510)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 359 (510)
...|++++|...+++... .+..++..+...|... |++++|...++++.+.+..|+ ...+..+...+...|++
T Consensus 53 ---~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 53 ---QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred ---HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 556666666666666543 3556788899999999 999999999999988333343 45788888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 046354 360 EKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
++|...++++.+. .+.+...+..++..+.+.|++++|...++++.+..| +...+..+...+...|+.+.|...++.
T Consensus 130 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 130 GLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999875 244578888999999999999999999998876544 566777777788899999999999999
Q ss_pred HHhcCCCCchhHHHH
Q 046354 438 LIELQPSSSGAYVLS 452 (510)
Q Consensus 438 ~~~~~p~~~~~~~~l 452 (510)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999987665543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=127.04 Aligned_cols=265 Identities=12% Similarity=0.021 Sum_probs=178.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhhCC--CCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CChhhH
Q 046354 145 SWTTMCTGLERNAMTKLAREYFVQMP--NKD-----IVAWNAMITAYVDAGNMAQASELFNLMPQ---------RNVWTW 208 (510)
Q Consensus 145 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 208 (510)
.+......+...|++++|...++++. .|+ ...+..+...|...|++++|...+++..+ ....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34445667778888888888888776 333 25667777888888888888888776543 124567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccc
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (510)
..+...+...|++++|...+++..+.... ++...
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------------------------- 121 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--------------------------------------------- 121 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH---------------------------------------------
Confidence 77777888888888888888776442100 00000
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCC--------------------hhhHHHHHHHHHHc----CCCCC-
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH--------------------GFQVFRLFARMLKS----GTKPD- 342 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~- 342 (510)
...++..+...|...|+ +++|...+++.... +..|.
T Consensus 122 -------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~ 182 (338)
T 3ro2_A 122 -------------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQ 182 (338)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -------------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 01234445555555555 66666666655432 11111
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------c
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-------D 411 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~ 411 (510)
...+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++..+..| .
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 235666677777888888888888877653211111 23677788888899999999988887653311 1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSS------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++..+...+...|++++|...++++++..|.. ...+..++.+|...|++++|..++++..
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4577788888999999999999999998665432 3357889999999999999999999876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.3e-13 Score=126.55 Aligned_cols=309 Identities=10% Similarity=0.015 Sum_probs=149.7
Q ss_pred HHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHHHHHHhcCCH---HHHHHHHhhCCCCChhhHHHHHHHHHhcC-----
Q 046354 149 MCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNM---AQASELFNLMPQRNVWTWNAMIDRYARNG----- 219 (510)
Q Consensus 149 l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~----- 219 (510)
+...+.+.|++++|.++|++.. ..++..+..+...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 5666778889999999998876 34555666677777778888 89999998888777777888877666655
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccccc----Chhh
Q 046354 220 PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL----DVNS 295 (510)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~ 295 (510)
++++|...|++..+.|...-...+..+........................++.....+...| ...+ ..+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y-----~~~~~~~~~~~~ 163 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLY-----RTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHH-----HHHTCGGGGHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH-----HcCCCcccCHHH
Confidence 778999999998887755433333333322222111111111111111111233333344444 3333 3333
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHhcC---ChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC----CcHHHHHHHHHH
Q 046354 296 ARLAFERLEAKDVVSWTAMILAYSNHG---HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA----GLVEKGRKTFNL 368 (510)
Q Consensus 296 a~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~ 368 (510)
+..+++.....++..+..+...|...| +.++|+..|++..+.| +++...+..+...|... +++++|..+|+.
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 444455444445556666666666666 6666666666666654 33333333344444332 456666666665
Q ss_pred HHHhhCCCCCcchhHhHHhH-H--hhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHh
Q 046354 369 MSRAYGFKPRAEHYSCLADI-L--RRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHG-----DVRMADYIGERLIE 440 (510)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~ 440 (510)
.. +-++..+..|... + ...|++++|.+.|++..+ ..+...+..|...|. .| ++++|...|+++.
T Consensus 243 aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 243 IA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp HG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred Hc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 54 1233444444444 2 345566666666655441 124444445554444 33 5666666666554
Q ss_pred cCCCCchhHHHHHHHHHH----cCCChHHHHHHHHHH
Q 046354 441 LQPSSSGAYVLSANVHAA----RGEWDEFAQVRKKME 473 (510)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 473 (510)
|.++..+..|+.+|.. ..+.++|.++|++..
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 5555555556555554 225555666655544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=129.76 Aligned_cols=265 Identities=13% Similarity=0.024 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhhCC--CC-C----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CChhhH
Q 046354 145 SWTTMCTGLERNAMTKLAREYFVQMP--NK-D----IVAWNAMITAYVDAGNMAQASELFNLMPQ---------RNVWTW 208 (510)
Q Consensus 145 ~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 208 (510)
.+......+...|++++|...|+++. .| + ..++..+...|...|++++|...+++... ....++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 34455666677777777777777765 23 2 24566677777777777777777665432 123456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccc
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFM-PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (510)
..+...+...|++++|...+++..+.... ++..
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------------------------- 124 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV---------------------------------------------- 124 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc----------------------------------------------
Confidence 66777777777777777777766431000 0000
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCC--------------------hhhHHHHHHHHHHc----CCCCC-
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGH--------------------GFQVFRLFARMLKS----GTKPD- 342 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~p~- 342 (510)
....++..+...|...|+ +++|...+++.... +..|.
T Consensus 125 ------------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~ 186 (406)
T 3sf4_A 125 ------------------GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ 186 (406)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHH
Confidence 012245666666777777 78888887776542 11111
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC---c----
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER---D---- 411 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~---- 411 (510)
..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++..+..| +
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 236777888889999999999999998764222222 23778899999999999999999988754322 1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSS------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..++..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|.+++++..
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4577888899999999999999999999665443 4468899999999999999999999876
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=121.66 Aligned_cols=226 Identities=13% Similarity=-0.013 Sum_probs=178.3
Q ss_pred cccCCCChHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCCh
Q 046354 3 QFGCTGKVKEATKLFDEMSQP-------DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRV 74 (510)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~ 74 (510)
.+...|++++|+..|+.+.+. +..+|..+...+...|++++|...|+++.+..| +...+..+...+...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 356779999999999998741 456788899999999999999999999998877 578899999999999999
Q ss_pred hhHHHHHHhhcc---CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHH
Q 046354 75 DEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCT 151 (510)
Q Consensus 75 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~ 151 (510)
++|.+.|++..+ .+..++..+...|...|++++|...|+++.+..|+.......+ .
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---------------------~ 152 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL---------------------Y 152 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---------------------H
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH---------------------H
Confidence 999999999965 3577899999999999999999999999988756544322222 1
Q ss_pred HHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhcCCh
Q 046354 152 GLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRN-------VWTWNAMIDRYARNGPE 221 (510)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~ 221 (510)
.+...|++++|...++... +++...+ .++..+...++.++|...++.....+ ..+|..+...+.+.|++
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 2245578889998887665 3444444 47777888899999999999887622 47789999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHhhHHHHHHHhhh
Q 046354 222 GAAMKLLNLMFQSRFMP-NETTCTSILTSCEG 252 (510)
Q Consensus 222 ~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 252 (510)
++|...|++..... | +...+...+....+
T Consensus 232 ~~A~~~~~~al~~~--p~~~~~~~~~~~~l~~ 261 (275)
T 1xnf_A 232 DSATALFKLAVANN--VHNFVEHRYALLELSL 261 (275)
T ss_dssp HHHHHHHHHHHTTC--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--chhHHHHHHHHHHHHH
Confidence 99999999998753 5 33444333333333
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=131.92 Aligned_cols=194 Identities=9% Similarity=0.017 Sum_probs=170.5
Q ss_pred chhhhhhhhhhccccccccccCh-hhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDV-NSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
+...+..+...+ ...|++ ++|...|++..+ .+...|..+...|...|++++|...|++..+. .|+...+
T Consensus 101 ~a~~~~~lg~~~-----~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 173 (474)
T 4abn_A 101 EAQALMLKGKAL-----NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSL 173 (474)
T ss_dssp CHHHHHHHHHHH-----TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHH
T ss_pred hHHHHHHHHHHH-----HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHH
Confidence 445556666666 889999 999999998865 35678999999999999999999999999985 5777888
Q ss_pred HHHHHhcCcC---------CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhc--------CChHHHHHHHhhCCCCC
Q 046354 347 VGVLSDCSHA---------GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRA--------GQVKEAMRVVSKMPPHE 409 (510)
Q Consensus 347 ~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~ 409 (510)
..+...+... |++++|...++++.+. .+.+...+..+..+|... |++++|...|++..+..
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 251 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC
Confidence 9999999999 9999999999999975 244678889999999998 99999999999998766
Q ss_pred C----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 410 R----DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 410 p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
| +...|..+...|...|++++|...|+++++++|+++..+..++.++...|++++|++.+.+++
T Consensus 252 p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 252 RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6 677999999999999999999999999999999999999999999999999999997665443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=6e-11 Score=117.93 Aligned_cols=96 Identities=8% Similarity=0.018 Sum_probs=66.7
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCC---hhhHHHHHHhhcc-----CChhhH
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGR---VDEARKVFDEIYE-----GNVYSW 92 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~-----~~~~~~ 92 (510)
+-|...|..++..+.+.+.++.+..+|+.+....| ....|...+..-.+.++ ++.+..+|+..+. |++..|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 34777888888888888888888888888888766 45667777777777777 8888888888843 666777
Q ss_pred HHHHHHHHcCCCh--------HHHHHHHHhccc
Q 046354 93 TSLISGYFKARQV--------DEGRRLFDRMPL 117 (510)
Q Consensus 93 ~~li~~~~~~g~~--------~~A~~~~~~m~~ 117 (510)
...+....+.++. +...++|+....
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~ 175 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVD 175 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 7777665554443 233466665443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=131.15 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=148.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHh
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSC 384 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 384 (510)
+..+|+.+...|.+.|++++|+..|++..+. .|+ ...+..+..++.+.|++++|.+.|+++.+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3467899999999999999999999999985 454 568899999999999999999999999875 45 5788999
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
+..+|.+.|++++|++.|++..+..| +...|..+...|...|++++|+..|+++++++|+++..+..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999987777 57799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 046354 464 EFAQVRKKME 473 (510)
Q Consensus 464 ~A~~~~~~~~ 473 (510)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=111.12 Aligned_cols=169 Identities=11% Similarity=0.004 Sum_probs=146.6
Q ss_pred cchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 270 QETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
.++.++..+...| ...|++++|...|++..+ .+..+|..+..+|...|++++|...++...... +.+...+
T Consensus 3 e~~~iy~~lG~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 76 (184)
T 3vtx_A 3 ETTTIYMDIGDKK-----RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAY 76 (184)
T ss_dssp -CHHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred cHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHH
Confidence 3566788888888 999999999999998876 456789999999999999999999999998863 4445577
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
..+...+...++++.+...+.+..+. .+.+...+..+..+|.+.|++++|++.|++..+..| +..+|..+...|.+.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 77778888999999999999999874 344677888999999999999999999999887777 677899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 046354 426 GDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~ 446 (510)
|++++|...|+++++++|+++
T Consensus 155 g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHhCCccCH
Confidence 999999999999999999764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-10 Score=115.64 Aligned_cols=395 Identities=11% Similarity=0.099 Sum_probs=256.5
Q ss_pred cCCCChHHHHHHHhhcC---CCChhhHHHHHHHHHhcCC---hhhHHHHHHhccccC---CChhHHHHHHHHHHhcCCh-
Q 046354 5 GCTGKVKEATKLFDEMS---QPDPVSCASMITVFLRNHD---LPKAEALFRAMPESQ---RNIVAESAMIDGYVKAGRV- 74 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~---p~~~~~~~li~~~~~~~~~- 74 (510)
.+.+.++.+..+|+.+. +.+...|..-+....+.|+ ++.+..+|++..... |++..|...+....+.++.
T Consensus 77 ~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~ 156 (679)
T 4e6h_A 77 VSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDII 156 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCST
T ss_pred HhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccc
Confidence 34678999999999997 5567888888998889998 999999999999887 8999999888877776654
Q ss_pred -------hhHHHHHHhhc------cC-ChhhHHHHHHHHHc---------CCChHHHHHHHHhccccCCCh---hhHHHH
Q 046354 75 -------DEARKVFDEIY------EG-NVYSWTSLISGYFK---------ARQVDEGRRLFDRMPLKLKNV---VSWTTV 128 (510)
Q Consensus 75 -------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~---~~~~~l 128 (510)
+...++|+... .+ +...|...+..... .++++.+..+|++.... |.. .+|...
T Consensus 157 ~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y 235 (679)
T 4e6h_A 157 TGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRY 235 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 33447777653 33 33578888776543 34578899999999865 322 233222
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhh-------CCC--------------C--C------hhHHHH
Q 046354 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ-------MPN--------------K--D------IVAWNA 179 (510)
Q Consensus 129 l~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~--------------~--~------~~~~~~ 179 (510)
..--...+.. .+ ..++. ....+++.|...+.. +.. | + ...|..
T Consensus 236 ~~fe~~~~~~-~a-----~~~~~--e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~ 307 (679)
T 4e6h_A 236 TQWEQDVNQL-TA-----RRHIG--ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLE 307 (679)
T ss_dssp HHHHHHHCTT-TH-----HHHHH--HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHH
T ss_pred HHHHHhcCcc-hH-----HHHHH--HhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHH
Confidence 1111111111 00 00000 011122333333322 110 1 0 134555
Q ss_pred HHHHHHhcC-------CHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCCHhhHHHHHH
Q 046354 180 MITAYVDAG-------NMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAM-KLLNLMFQSRFMPNETTCTSILT 248 (510)
Q Consensus 180 li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~ 248 (510)
.+..--..+ ..+++..+|++... .+...|-..+..+...|+.++|. ++|+..... .|..
T Consensus 308 yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s-------- 377 (679)
T 4e6h_A 308 WIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNS-------- 377 (679)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTC--------
T ss_pred HHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCC--------
Confidence 554332222 12334556666554 35667777777777888888886 888887652 2322
Q ss_pred HhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC-------------C---------
Q 046354 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA-------------K--------- 306 (510)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-------------~--------- 306 (510)
..++...+... -..|+++.|..+|+++.. |
T Consensus 378 -----------------------~~Lwl~~a~~e-----e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~ 429 (679)
T 4e6h_A 378 -----------------------AVLAFSLSEQY-----ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL 429 (679)
T ss_dssp -----------------------HHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred -----------------------HHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhh
Confidence 22222223333 566788888888887654 2
Q ss_pred ---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc-CCcHHHHHHHHHHHHHhhCCCCCcchh
Q 046354 307 ---DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH-AGLVEKGRKTFNLMSRAYGFKPRAEHY 382 (510)
Q Consensus 307 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~ 382 (510)
....|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .++.+.|.++|+...+. ++.++..+
T Consensus 430 ~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w 507 (679)
T 4e6h_A 430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHH
Confidence 1236888888888899999999999999875112223344332222222 45699999999999986 44566677
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER----DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
...++.....|+.+.|..+|++.....| ....|...+..-.+.|+.+.+..+.+++.+..|+++..
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 8888988899999999999999887655 34578888888889999999999999999999997543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=123.60 Aligned_cols=205 Identities=10% Similarity=0.002 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHhcCC-----------------hHHHHHHH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ---------RNVWTWNAMIDRYARNGP-----------------EGAAMKLL 228 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~A~~~~ 228 (510)
.++..+...|...|++++|...+++..+ ....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4566777778888888888887776553 124567888888888999 77777766
Q ss_pred HHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--C
Q 046354 229 NLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K 306 (510)
Q Consensus 229 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~ 306 (510)
++..+. ...... .
T Consensus 207 ~~al~~-----------------------------------------------------------------~~~~~~~~~ 221 (411)
T 4a1s_A 207 QENLKL-----------------------------------------------------------------MRDLGDRGA 221 (411)
T ss_dssp HHHHHH-----------------------------------------------------------------HHHHTCHHH
T ss_pred HHHHHH-----------------------------------------------------------------HHHcCCHHH
Confidence 665321 111101 0
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CC----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC---
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PD----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR--- 378 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 378 (510)
...++..+...|...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+...-..+
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 301 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV 301 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1235667777888888888888888887653110 11 126777788888999999999999888764211111
Q ss_pred -cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 379 -AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-------DHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 379 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
..++..+...|...|++++|...+++..+..+ ...++..+...|...|++++|...+++++++.+.
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 45677888999999999999999988764311 2347788888999999999999999999877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=9e-12 Score=113.45 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=146.3
Q ss_pred hhHHHHhcccCC---C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch--hHHHHHHhcCcCCcHHHHHHHHH
Q 046354 294 NSARLAFERLEA---K-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI--TFVGVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 294 ~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~ 367 (510)
++|..+|++... | +...|..++..+.+.|++++|..+|++..+ +.|+.. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 889999988765 3 455899999999999999999999999997 456543 78888888889999999999999
Q ss_pred HHHHhhCCCCCcchhHhHHhHHh-hcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc---C
Q 046354 368 LMSRAYGFKPRAEHYSCLADILR-RAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIEL---Q 442 (510)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 442 (510)
++.+. .+++...|...+.... ..|++++|..+|++..+..| +...|..++..+.+.|++++|..+|++++.. .
T Consensus 159 ~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 99863 2334455543333322 36999999999999876656 6778899999999999999999999999985 4
Q ss_pred CC-CchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 443 PS-SSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 443 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
|+ ....|..++..+.+.|+.++|..+++++.+..+..+
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 43 556788899999999999999999998875555433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=119.39 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=140.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHH
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMPQ-----RN----VWTWNAMIDRYARNGP--------------------EGAA 224 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A 224 (510)
..++..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34567777788888888888887776643 22 3467788888888888 7777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccC
Q 046354 225 MKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304 (510)
Q Consensus 225 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 304 (510)
...+++.... .....
T Consensus 163 ~~~~~~a~~~-----------------------------------------------------------------~~~~~ 177 (338)
T 3ro2_A 163 VDLYEENLSL-----------------------------------------------------------------VTALG 177 (338)
T ss_dssp HHHHHHHHHH-----------------------------------------------------------------HHHHT
T ss_pred HHHHHHHHHH-----------------------------------------------------------------HHhcC
Confidence 7776665321 00000
Q ss_pred C--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCC----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC
Q 046354 305 A--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPD----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 305 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 377 (510)
. .....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..++++..+...-.+
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 0 0123466667777888888888888877764310 111 22666777778888899999888888765421112
Q ss_pred C----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 378 R----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-------DHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 378 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
+ ..++..+...+...|++++|...+++..+..| ...++..+...+...|++++|...+++++++.+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 2 45667788889999999999999887754311 2447778888999999999999999999977664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-11 Score=109.90 Aligned_cols=217 Identities=11% Similarity=0.037 Sum_probs=155.1
Q ss_pred HHHHHHHhhCC---CCChhHHHHHHHHHHh-------cCCH-------HHHHHHHhhCCC---C-ChhhHHHHHHHHHhc
Q 046354 160 KLAREYFVQMP---NKDIVAWNAMITAYVD-------AGNM-------AQASELFNLMPQ---R-NVWTWNAMIDRYARN 218 (510)
Q Consensus 160 ~~a~~~~~~~~---~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 218 (510)
+.|..+|+++. +.++..|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45566666655 4556667666666543 4664 677777766543 2 344667777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHH
Q 046354 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298 (510)
Q Consensus 219 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 298 (510)
|++++|..+|+++.+ +.|+
T Consensus 113 ~~~~~A~~~~~~al~--~~p~----------------------------------------------------------- 131 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDI----------------------------------------------------------- 131 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSS-----------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHh--cccc-----------------------------------------------------------
Confidence 777777777777654 2221
Q ss_pred HhcccCCCChh-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc-CcCCcHHHHHHHHHHHHHhhCCC
Q 046354 299 AFERLEAKDVV-SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC-SHAGLVEKGRKTFNLMSRAYGFK 376 (510)
Q Consensus 299 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~ 376 (510)
+.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.+.|..+|+...+. .+
T Consensus 132 --------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p 200 (308)
T 2ond_A 132 --------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YG 200 (308)
T ss_dssp --------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HT
T ss_pred --------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 122 57777777888899999999999998753 33444444333322 2369999999999999875 24
Q ss_pred CCcchhHhHHhHHhhcCChHHHHHHHhhCCCC---CC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPH---ER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.++..+..++..+.+.|++++|..+|++.... .| ....|..++..+...|+.+.|..+++++++..|+++..
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 201 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 46788889999999999999999999988753 44 35688888998999999999999999999999986543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=107.51 Aligned_cols=163 Identities=14% Similarity=0.024 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 356667778888899999999888877642 345667778888888899999999999988874 34467778888889
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (510)
+...|++++|.+.++++.+..| +...+..+...+...|++++|...++++++..|+++..+..++.++...|++++|..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988775555 677888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 046354 468 VRKKMER 474 (510)
Q Consensus 468 ~~~~~~~ 474 (510)
++++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998873
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=116.75 Aligned_cols=294 Identities=7% Similarity=-0.003 Sum_probs=162.7
Q ss_pred HHhcCChhhHHHHHHhcccc------CCChhHHHHHHHH--HHhcCChhhHH-----------HHHHhhcc-C-Chh---
Q 046354 35 FLRNHDLPKAEALFRAMPES------QRNIVAESAMIDG--YVKAGRVDEAR-----------KVFDEIYE-G-NVY--- 90 (510)
Q Consensus 35 ~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~li~~--~~~~~~~~~A~-----------~~~~~~~~-~-~~~--- 90 (510)
+.+.+++++|..+++++.+. .++...|-.++.. ..-.++.+.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45789999999999888654 2233334444322 12223333443 55555422 1 111
Q ss_pred ---hHHHHHHHHHcCCChHHHHHHHHhcccc---CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHH
Q 046354 91 ---SWTSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE 164 (510)
Q Consensus 91 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~ 164 (510)
.+......+...|++++|...|++..+. .++..
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------------------- 140 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI----------------------------------------- 140 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-----------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH-----------------------------------------
Confidence 1222445566778888888888777653 12210
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 165 YFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----R-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
....++..+..+|...|++++|...+++..+ + ...+++.+...|...|++++|...+++..+.
T Consensus 141 -------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 141 -------EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0123455555566666666666555554432 1 2356778888888899999998888877541
Q ss_pred CCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHH
Q 046354 235 RFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAM 314 (510)
Q Consensus 235 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 314 (510)
.. +.++.. ....++..+
T Consensus 214 ~~----------------------------------------------------~~~~~~-----------~~~~~~~~l 230 (383)
T 3ulq_A 214 AE----------------------------------------------------AEKQPQ-----------LMGRTLYNI 230 (383)
T ss_dssp HH----------------------------------------------------HTTCHH-----------HHHHHHHHH
T ss_pred HH----------------------------------------------------HcCChH-----------HHHHHHHHH
Confidence 10 000000 011246667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc----CC-CCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC---cchhHhHH
Q 046354 315 ILAYSNHGHGFQVFRLFARMLKS----GT-KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR---AEHYSCLA 386 (510)
Q Consensus 315 ~~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 386 (510)
...|...|++++|...+++..+. +. +....++..+...+...|++++|...+++..+...-.++ ...+..+.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888888888888888877662 22 222345666777777777777777777776553111111 12234455
Q ss_pred hHHhhcCC---hHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 387 DILRRAGQ---VKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 387 ~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
..+...|+ +++|..++++..........+..+...|...|++++|...+++++
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555 555555555553111123344455555555555555555555555
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.1e-11 Score=111.69 Aligned_cols=286 Identities=10% Similarity=-0.093 Sum_probs=185.6
Q ss_pred cCCCChHHHHHHHhhcC------CCC--hhhHHHHHHH--HHhcCChhhHH-----------HHHHhccccCCChhHH--
Q 046354 5 GCTGKVKEATKLFDEMS------QPD--PVSCASMITV--FLRNHDLPKAE-----------ALFRAMPESQRNIVAE-- 61 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~------~~~--~~~~~~li~~--~~~~~~~~~A~-----------~~~~~~~~~~p~~~~~-- 61 (510)
.+.+++++|..+++++. +.| ...|-.++.. ..-.++++.+. +.++.+....++...+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 46789999999999885 123 3334444332 22233444444 6777665432222222
Q ss_pred ----HHHHHHHHhcCChhhHHHHHHhhcc-----C----ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHH
Q 046354 62 ----SAMIDGYVKAGRVDEARKVFDEIYE-----G----NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTV 128 (510)
Q Consensus 62 ----~~li~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l 128 (510)
......+...|++++|...++...+ + ...++..+...|...|+++.|...+++..+.
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------- 172 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI---------- 172 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Confidence 2255677889999999999999854 2 2357889999999999999999999988764
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-----CCCh----hHHHHHHHHHHhcCCHHHHHHHHhh
Q 046354 129 VLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-----NKDI----VAWNAMITAYVDAGNMAQASELFNL 199 (510)
Q Consensus 129 l~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 199 (510)
+...++.......++..+...|...|++++|.+.+++.. .++. .++..+..+|...|++++|...|++
T Consensus 173 ---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 173 ---YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp ---HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 111111122234567778888899999999999988876 2222 4788899999999999999999887
Q ss_pred CCC--------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCc
Q 046354 200 MPQ--------R-NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQ 270 (510)
Q Consensus 200 ~~~--------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 270 (510)
..+ | ...++..+...+.+.|++++|...+++....... .+.+.
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~ 301 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK----------------------------AGDVI 301 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------HTCHH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------------------------cCCHH
Confidence 654 2 2456888999999999999999999987652100 00000
Q ss_pred chhhhhhhhhhccccccccccC---hhhHHHHhcccCCC--ChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLD---VNSARLAFERLEAK--DVVSWTAMILAYSNHGHGFQVFRLFARMLK 336 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 336 (510)
....+..+...+ ...|+ +++|...+++.... ....+..+...|...|++++|...+++..+
T Consensus 302 ~~~~~~~l~~~~-----~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 302 YLSEFEFLKSLY-----LSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHH-----TSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011112233333 55555 66666666665431 123455566666666666666666666554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-10 Score=108.69 Aligned_cols=201 Identities=9% Similarity=0.014 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHH
Q 046354 176 AWNAMITAYVDAGNMAQASELFNLMPQ-----R-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTS 245 (510)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 245 (510)
++..+..+|...|++++|...+++..+ + ...+++.+...|...|++++|...|++..+..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~---------- 212 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA---------- 212 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH----------
Confidence 455566666666666666665555432 1 23567788888889999999998888775410
Q ss_pred HHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChh
Q 046354 246 ILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGF 325 (510)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (510)
.+.++.. ....++..+...|...|+++
T Consensus 213 ------------------------------------------~~~~~~~-----------~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 213 ------------------------------------------MDIQNDR-----------FIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp ------------------------------------------HHTTCHH-----------HHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------------------------------HHcCCHH-----------HHHHHHHHHHHHHHHCCCHH
Confidence 0000000 01224666777788888888
Q ss_pred hHHHHHHHHHHc----CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc---chhHhHHhHHhhcCC---h
Q 046354 326 QVFRLFARMLKS----GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA---EHYSCLADILRRAGQ---V 395 (510)
Q Consensus 326 ~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~---~ 395 (510)
+|...+++..+. +.+....++..+...+...|++++|..++++..+...-.+++ ..+..+...+...|+ +
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 888888877651 222224566666777777777777777777776642211121 223334444445555 5
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 396 KEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
++|...+++..........+..+...|...|++++|...|++++
T Consensus 320 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 320 HDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555533111122233444455555555555555555544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-12 Score=108.98 Aligned_cols=166 Identities=10% Similarity=-0.011 Sum_probs=118.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 386 (510)
++..|......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+. .+.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 345566666777777788888888777777543256666666777777777888888777777753 233456677777
Q ss_pred hHHhhcCChHHHHHHHhhCCCCCCc-H-------HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHH
Q 046354 387 DILRRAGQVKEAMRVVSKMPPHERD-H-------VVLGALLGACRLHGDVRMADYIGERLIELQPS--SSGAYVLSANVH 456 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~ 456 (510)
.+|...|++++|...+++..+..|+ . ..|..+...+...|++++|+..|+++++.+|+ ++..+..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 7777778888888777777655553 3 34666666677777888888888888777777 777777777777
Q ss_pred HHcCCC---------------------------hHHHHHHHHHHH
Q 046354 457 AARGEW---------------------------DEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g~~---------------------------~~A~~~~~~~~~ 474 (510)
...|+. ++|+..+++..+
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777776 888888887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.7e-10 Score=105.15 Aligned_cols=264 Identities=12% Similarity=-0.008 Sum_probs=162.3
Q ss_pred HHHHHHHhcCchHHHHHHHhhCC---CC-Ch----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCh----hhHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMP---NK-DI----VAWNAMITAYVDAGNMAQASELFNLMPQ-----RNV----WTWNA 210 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~---~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~ 210 (510)
.....+...|+++.|.+.+++.. ++ +. .+++.+...+...|++++|...+++... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445666778888877776644 11 21 1455566677777888888777776553 121 23556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccc
Q 046354 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQ 290 (510)
Q Consensus 211 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 290 (510)
+...+...|++++|...+++...... ..+...
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~----------------------------~~~~~~-------------------- 130 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLIN----------------------------EQHLEQ-------------------- 130 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HTTCTT--------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH----------------------------Hhcccc--------------------
Confidence 66677777888888777777643110 000000
Q ss_pred cChhhHHHHhcccCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--C--CchhHHHHHHhcCcCCcHHHHHHH
Q 046354 291 LDVNSARLAFERLEAK-DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK--P--DEITFVGVLSDCSHAGLVEKGRKT 365 (510)
Q Consensus 291 ~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~~li~~~~~~g~~~~a~~~ 365 (510)
.+ ....+..+...+...|++++|...+++....... + ...++..+...+...|++++|...
T Consensus 131 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 196 (373)
T 1hz4_A 131 --------------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 196 (373)
T ss_dssp --------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --------------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00 1123455666777788888888888777654211 1 123455666677778888888888
Q ss_pred HHHHHHhhCCCCCcchhH-----hHHhHHhhcCChHHHHHHHhhCCCCCCc-----HHHHHHHHHHHHhhCCHHHHHHHH
Q 046354 366 FNLMSRAYGFKPRAEHYS-----CLADILRRAGQVKEAMRVVSKMPPHERD-----HVVLGALLGACRLHGDVRMADYIG 435 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~ 435 (510)
+++......-...+..+. ..+..+...|++++|...+++.....|. ...+..+...+...|++++|...+
T Consensus 197 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 276 (373)
T 1hz4_A 197 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 276 (373)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887765411111111121 2234466788888888888887754332 224566677778888888888888
Q ss_pred HHHHhcCCCC------chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 436 ERLIELQPSS------SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 436 ~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+++....+.. ...+..++.++...|+.++|...+++..
T Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 277 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8887543321 1246667788888888888888888776
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-12 Score=123.26 Aligned_cols=179 Identities=11% Similarity=-0.032 Sum_probs=157.1
Q ss_pred ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHH
Q 046354 292 DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHG-FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 292 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 367 (510)
.++++...++.... .+...|..+...|...|++ ++|+..|++..+.. +-+...|..+...+...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666665543 3567888999999999999 99999999999863 4446789999999999999999999999
Q ss_pred HHHHhhCCCCCcchhHhHHhHHhhc---------CChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh--------CCHH
Q 046354 368 LMSRAYGFKPRAEHYSCLADILRRA---------GQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH--------GDVR 429 (510)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------~~~~ 429 (510)
++.+. .|+...+..+..++... |++++|...+++..+..| +...|..+..+|... |+++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99854 68788889999999999 999999999999887777 677999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 430 MADYIGERLIELQP---SSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 430 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+|...|+++++++| +++..+..++.+|...|++++|+..|++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999998774
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=111.89 Aligned_cols=240 Identities=13% Similarity=0.077 Sum_probs=150.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcc
Q 046354 204 NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYV 283 (510)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 283 (510)
+..++..+...+...|++++|..+++++.+.... . .....+.....+..+...+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------------~-------------~~~~~~~~~~~~~~la~~~- 79 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK------------T-------------SGHDHPDVATMLNILALVY- 79 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------H-------------HCSSSHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------H-------------cCCCCHHHHHHHHHHHHHH-
Confidence 3467888889999999999999999988652000 0 0000111223344445555
Q ss_pred ccccccccChhhHHHHhcccCC-----------CChhhHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCCC-chh
Q 046354 284 FWDWGFQLDVNSARLAFERLEA-----------KDVVSWTAMILAYSNHGHGFQVFRLFARMLKS------GTKPD-EIT 345 (510)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~ 345 (510)
...|++++|...+++... ....++..+...|...|++++|...+++..+. +..|+ ...
T Consensus 80 ----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 80 ----RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp ----HHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 777888888888776643 12346777778888888888888888887764 22222 345
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhC------CCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC---------CC
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYG------FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH---------ER 410 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p 410 (510)
+..+...+...|++++|..+++++.+... .+....++..+..+|...|++++|.+.++++.+. .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 66677778888888888888888765310 1112445677788888888888888888776531 11
Q ss_pred c-------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 411 D-------HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 411 ~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
. ...+..+...+...+.+.++...++......|..+..+..++.+|...|++++|.+++++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 11222223333445566666777777777778888889999999999999999999999876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-11 Score=103.52 Aligned_cols=178 Identities=12% Similarity=-0.017 Sum_probs=147.0
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC----CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhH
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA----KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITF 346 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 346 (510)
++..+......+ ...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+.. +-+...+
T Consensus 6 ~~~~~~~~g~~~-----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 79 (228)
T 4i17_A 6 DPNQLKNEGNDA-----LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAY 79 (228)
T ss_dssp CHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHH
T ss_pred CHHHHHHHHHHH-----HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHH
Confidence 345555666666 889999999999998764 456677778999999999999999999999853 3345678
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-------chhHhHHhHHhhcCChHHHHHHHhhCCCCCCc---HHHHH
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-------EHYSCLADILRRAGQVKEAMRVVSKMPPHERD---HVVLG 416 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~ 416 (510)
..+...+...|++++|...+++..+. .+.++ ..|..+...+...|++++|.+.+++..+..|+ ...+.
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 157 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 88899999999999999999999875 23344 45788888999999999999999999988886 45788
Q ss_pred HHHHHHHhhCCH---------------------------HHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 417 ALLGACRLHGDV---------------------------RMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 417 ~l~~~~~~~~~~---------------------------~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
.+...|...|+. ++|...++++++++|+++.....+..+.
T Consensus 158 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 158 SLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888888888877 9999999999999999988777776553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-11 Score=100.22 Aligned_cols=166 Identities=14% Similarity=-0.045 Sum_probs=142.5
Q ss_pred hhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 046354 275 TYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351 (510)
Q Consensus 275 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 351 (510)
+..+...+ ...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 11 ~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 11 YRDKGISH-----AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHH-----HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44445555 888999999999999886 356788889999999999999999999998863 456678888888
Q ss_pred hcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHH
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRM 430 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 430 (510)
.+...|++++|.+.++++.+. .+.+...+..++..+...|++++|...++++.+..| +...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999875 345678888899999999999999999998876655 67788999999999999999
Q ss_pred HHHHHHHHHhcCCCCchh
Q 046354 431 ADYIGERLIELQPSSSGA 448 (510)
Q Consensus 431 A~~~~~~~~~~~p~~~~~ 448 (510)
|...++++++..|+++..
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999988887644
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=113.16 Aligned_cols=242 Identities=13% Similarity=0.075 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHHhcCchHHHHHHHhhCCC--------CC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------
Q 046354 142 EVISWTTMCTGLERNAMTKLAREYFVQMPN--------KD---IVAWNAMITAYVDAGNMAQASELFNLMPQ-------- 202 (510)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 202 (510)
....+..+...+...|++++|..+++++.. .+ ..++..+...|...|++++|...+++...
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 556677778888888888888888887652 12 34567778888888888888888876642
Q ss_pred ---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhh
Q 046354 203 ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCT 279 (510)
Q Consensus 203 ---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (510)
....++..+...+...|++++|...++++.+...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------------------------------------------- 142 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE------------------------------------------- 142 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-------------------------------------------
Confidence 1245677788888888888888888887754200
Q ss_pred hhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCCC-chhHHHHHHh
Q 046354 280 CHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS------GTKPD-EITFVGVLSD 352 (510)
Q Consensus 280 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~li~~ 352 (510)
..+..-.......+..+...|...|++++|..+++++.+. +..|+ ..++..+...
T Consensus 143 ------------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 204 (311)
T 3nf1_A 143 ------------------KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC 204 (311)
T ss_dssp ------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHH
T ss_pred ------------------HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0000000001234666677777888888888888777664 11222 2356677777
Q ss_pred cCcCCcHHHHHHHHHHHHHhh------CCCCC-cch------hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAY------GFKPR-AEH------YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGAL 418 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~------~~~~~-~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 418 (510)
+...|++++|..+++++.+.. ...+. ... +..+...+...+.+.++...++......| ...++..+
T Consensus 205 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 284 (311)
T 3nf1_A 205 YLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNL 284 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHH
Confidence 888888888888888877531 11121 112 22233334455666667777777765555 55688899
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 419 LGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
...|...|++++|...+++++++.|.
T Consensus 285 a~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 285 GALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999987765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-11 Score=113.58 Aligned_cols=233 Identities=11% Similarity=0.026 Sum_probs=167.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 046354 178 NAMITAYVDAGNMAQASELFNLMPQ-----R----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILT 248 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 248 (510)
......+...|++++|...|++..+ + ...++..+...|...|++++|...+++..+..
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~------------- 171 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY------------- 171 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-------------
Confidence 3445567788999999999887654 2 24568888999999999999999998875411
Q ss_pred HhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHH
Q 046354 249 SCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVF 328 (510)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 328 (510)
.+.++... ....+++.+...|...|++++|.
T Consensus 172 ---------------------------------------~~~~~~~~----------~~~~~~~~lg~~y~~~~~~~~A~ 202 (378)
T 3q15_A 172 ---------------------------------------QNHPLYSI----------RTIQSLFVIAGNYDDFKHYDKAL 202 (378)
T ss_dssp ---------------------------------------HTSTTCHH----------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------------------------HhCCCchh----------hHHHHHHHHHHHHHHhCCHHHHH
Confidence 00000000 01235777888899999999999
Q ss_pred HHHHHHHHc----CCCC-CchhHHHHHHhcCcCCcHHHHHHHHHHHHHhh---CCCCCcchhHhHHhHHhhcCChHHHHH
Q 046354 329 RLFARMLKS----GTKP-DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY---GFKPRAEHYSCLADILRRAGQVKEAMR 400 (510)
Q Consensus 329 ~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (510)
..+++..+. +.++ ...++..+...+...|++++|...+++..+.. +.+....++..+...+.+.|++++|..
T Consensus 203 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 203 PHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999887763 1111 12467778888999999999999999988621 222236677889999999999999999
Q ss_pred HHhhCCCC-----CCc-HHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 046354 401 VVSKMPPH-----ERD-HVVLGALLGACRLHGD---VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKK 471 (510)
Q Consensus 401 ~~~~~~~~-----~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (510)
.+++..+. .|. ...+..+...+...++ +.+|...+++. ...|.....+..++.+|...|++++|..++++
T Consensus 283 ~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 283 FIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99876532 232 3345556666777788 77888877763 22233445678899999999999999999998
Q ss_pred HH
Q 046354 472 ME 473 (510)
Q Consensus 472 ~~ 473 (510)
..
T Consensus 362 al 363 (378)
T 3q15_A 362 VL 363 (378)
T ss_dssp HH
T ss_pred HH
Confidence 87
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-11 Score=108.17 Aligned_cols=186 Identities=10% Similarity=0.047 Sum_probs=145.7
Q ss_pred ccccChhhHHHHhcccCC-------C----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCC-CchhHHHH
Q 046354 288 GFQLDVNSARLAFERLEA-------K----DVVSWTAMILAYSNHGHGFQVFRLFARMLKS------GTKP-DEITFVGV 349 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~l 349 (510)
...|++++|...|++..+ + ...++..+...|...|++++|...+++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 556677777666665543 2 2457888999999999999999999998764 2223 24578888
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhh-----C-CCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC--------CC-cHHH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAY-----G-FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH--------ER-DHVV 414 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p-~~~~ 414 (510)
...+...|++++|..+++++.+.. . .+.....+..+...|...|++++|...++++.+. .| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 899999999999999999987642 1 1224667788999999999999999999887644 34 3457
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcC-------------------------------------------------CCC
Q 046354 415 LGALLGACRLHGDVRMADYIGERLIELQ-------------------------------------------------PSS 445 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------------------p~~ 445 (510)
+..+...|...|++++|...++++++.. |..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999999998641 333
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 446 SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+..+..++.+|...|++++|..++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4458889999999999999999999775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-09 Score=95.90 Aligned_cols=168 Identities=10% Similarity=-0.020 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-----Ccch
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-----RAEH 381 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~ 381 (510)
..++..+..++...|++++|++++.+.+..|.. -+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~ 176 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHH
Confidence 334445666666677777777777766554321 13345555666677777777777777777543 44 2344
Q ss_pred hHhHHhHH--hhcC--ChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc----------CCCCch
Q 046354 382 YSCLADIL--RRAG--QVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIEL----------QPSSSG 447 (510)
Q Consensus 382 ~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~ 447 (510)
...|+.++ ...| ++++|..+|+++.+..|+..+-..++.++.+.|++++|+..++.+.+. +|+++.
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 44454442 2223 677777777776655555333333444666677777777777765544 366666
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhhcccc
Q 046354 448 AYVLSANVHAARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
++..++.+....|+ +|.++++++++..|..|
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 66666666666665 66677766664444333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-10 Score=100.83 Aligned_cols=169 Identities=9% Similarity=0.032 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchh
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHY 382 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 382 (510)
...+-.+...+.+.|++++|...|+++.+. .|+ ...+..+..++...|++++|...|+.+.+.+.-.|. ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 334444555566666666666666666553 222 234555555566666666666666666654111111 2334
Q ss_pred HhHHhHHhh--------cCChHHHHHHHhhCCCCCCcH-HHH-----------------HHHHHHHHhhCCHHHHHHHHH
Q 046354 383 SCLADILRR--------AGQVKEAMRVVSKMPPHERDH-VVL-----------------GALLGACRLHGDVRMADYIGE 436 (510)
Q Consensus 383 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~~~~~~A~~~~~ 436 (510)
..+..++.. .|++++|...|+++.+..|+. ... ..+...|...|++++|...|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 455555555 666666666666655444422 222 445667778888888888888
Q ss_pred HHHhcCCCCc---hhHHHHHHHHHHc----------CCChHHHHHHHHHHHhhcc
Q 046354 437 RLIELQPSSS---GAYVLSANVHAAR----------GEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 437 ~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 478 (510)
++++..|+++ ..+..++.+|... |++++|...++++.+..+.
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 8888888754 3577777777766 7778888888877644443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-11 Score=95.26 Aligned_cols=119 Identities=13% Similarity=-0.004 Sum_probs=65.9
Q ss_pred hcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHH
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 429 (510)
.+...|++++|+..++.... ..| ++..+..+...|.+.|++++|++.|++..+..| +..+|..+...|...|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34445555666555555442 122 233444555566666666666666666554445 4445566666666666666
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHH-HHHHH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV-RKKME 473 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 473 (510)
+|...|+++++++|+++.++..++.+|.+.|++++|.+. +++..
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 666666666666666666666666666666666554443 34433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-11 Score=98.49 Aligned_cols=141 Identities=11% Similarity=-0.011 Sum_probs=108.1
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCC-chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCCh
Q 046354 317 AYSNHGHGFQVFRLFARMLKSGTKPD-EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV 395 (510)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (510)
.+...|++++|+..++..... .|+ ...+..+...|...|++++|.+.|++..+. .+-++..|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 344556677777777665542 232 335556677777888888888888888764 233677788888888899999
Q ss_pred HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHH-HHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 396 KEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYI-GERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
++|...|++..+..| +..+|..+...|.+.|++++|... ++++++++|+++..|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999988877777 577899999999999998776654 699999999999999999999888885
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-08 Score=95.16 Aligned_cols=230 Identities=10% Similarity=-0.062 Sum_probs=146.6
Q ss_pred HHHHHHhcCchHHHHHHHhhCC-----CCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----ChhhH
Q 046354 149 MCTGLERNAMTKLAREYFVQMP-----NKDI----VAWNAMITAYVDAGNMAQASELFNLMPQ-------R----NVWTW 208 (510)
Q Consensus 149 l~~~~~~~~~~~~a~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~ 208 (510)
+...+...|+++.|.+.+++.. .++. .++..+...+...|++++|...+++... + ....+
T Consensus 59 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 138 (373)
T 1hz4_A 59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 138 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHH
Confidence 3444455555555555555543 1222 2356677788889999998888876643 1 12456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccc
Q 046354 209 NAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWG 288 (510)
Q Consensus 209 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 288 (510)
..+...+...|++++|...+++........
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------------------- 168 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSY-------------------------------------------------- 168 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--------------------------------------------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcc--------------------------------------------------
Confidence 677888899999999999999886532110
Q ss_pred cccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc-hhHH-----HHHHhcCcCCcHHHH
Q 046354 289 FQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE-ITFV-----GVLSDCSHAGLVEKG 362 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~-----~li~~~~~~g~~~~a 362 (510)
+.. ....++..+...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|
T Consensus 169 --~~~------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 169 --QPQ------------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp --CGG------------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --CcH------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 000 01124556677788888999998888887654212221 1222 122336678899999
Q ss_pred HHHHHHHHHhhCCCCC---cchhHhHHhHHhhcCChHHHHHHHhhCCCCC-----C-cH-HHHHHHHHHHHhhCCHHHHH
Q 046354 363 RKTFNLMSRAYGFKPR---AEHYSCLADILRRAGQVKEAMRVVSKMPPHE-----R-DH-VVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p-~~-~~~~~l~~~~~~~~~~~~A~ 432 (510)
...++..... ...+. ...+..+...+...|++++|...+++..... + +. ..+..+..++...|+.++|.
T Consensus 235 ~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 235 ANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 9988887643 11111 1134567788888999999998887764321 1 22 25566677788899999999
Q ss_pred HHHHHHHhcCC
Q 046354 433 YIGERLIELQP 443 (510)
Q Consensus 433 ~~~~~~~~~~p 443 (510)
..+++++...+
T Consensus 314 ~~l~~al~~~~ 324 (373)
T 1hz4_A 314 RVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999885543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-10 Score=100.06 Aligned_cols=187 Identities=14% Similarity=0.030 Sum_probs=141.4
Q ss_pred chhhhhhhhhhccccccccccChhhHHHHhcccCC--C-C---hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCC-
Q 046354 271 ETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--K-D---VVSWTAMILAYSNHGHGFQVFRLFARMLKSGT-KPD- 342 (510)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 342 (510)
+..........+ ...|++++|...|+++.. | + ...+..+..+|.+.|++++|...|++..+... .|.
T Consensus 14 ~~~~~~~~a~~~-----~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 14 SPQEAFERAMEF-----YNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SHHHHHHHHHHH-----HHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CHHHHHHHHHHH-----HHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 334445555556 889999999999999876 3 3 45788889999999999999999999998521 112
Q ss_pred chhHHHHHHhcCc--------CCcHHHHHHHHHHHHHhhCCCCCcchh-----------------HhHHhHHhhcCChHH
Q 046354 343 EITFVGVLSDCSH--------AGLVEKGRKTFNLMSRAYGFKPRAEHY-----------------SCLADILRRAGQVKE 397 (510)
Q Consensus 343 ~~~~~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~ 397 (510)
...+..+..++.. .|++++|...|+++.+.+ +.+.... ..+...|.+.|++++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 2355666667777 999999999999999862 2233444 456888999999999
Q ss_pred HHHHHhhCCCCCCc----HHHHHHHHHHHHhh----------CCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHHcC
Q 046354 398 AMRVVSKMPPHERD----HVVLGALLGACRLH----------GDVRMADYIGERLIELQPSSSGA---YVLSANVHAARG 460 (510)
Q Consensus 398 A~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g 460 (510)
|+..|+++.+..|+ ...+..+..+|... |++++|...|+++++..|+++.. ...+..++...|
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLT 246 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 99999988755554 44677788888766 89999999999999999998654 444555555555
Q ss_pred CChH
Q 046354 461 EWDE 464 (510)
Q Consensus 461 ~~~~ 464 (510)
++++
T Consensus 247 ~~~~ 250 (261)
T 3qky_A 247 ELEG 250 (261)
T ss_dssp HHHT
T ss_pred Hhhh
Confidence 4443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.2e-10 Score=99.50 Aligned_cols=178 Identities=7% Similarity=-0.026 Sum_probs=146.0
Q ss_pred ChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH
Q 046354 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR 371 (510)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 371 (510)
..+.....+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++.+..
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34455566666665566677888889999999999999999999863 34556888889999999999999999999876
Q ss_pred hhCCCCCcchhHh-HHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--ch
Q 046354 372 AYGFKPRAEHYSC-LADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS--SG 447 (510)
Q Consensus 372 ~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~ 447 (510)
. .|+...... ....+.+.++.++|...+++..+..| +...+..+...+...|++++|...|+++++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 4 455443322 23346678889999999988876677 67789999999999999999999999999999998 77
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 448 AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+..++.++...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999999988765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.9e-11 Score=117.81 Aligned_cols=165 Identities=11% Similarity=0.066 Sum_probs=145.2
Q ss_pred CcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-ch
Q 046354 269 EQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD-EI 344 (510)
Q Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 344 (510)
+.+...++.+...+ ...|++++|...|++..+ .+..+|+.+..+|.+.|++++|+..|++..+. .|+ ..
T Consensus 6 P~~a~al~nLG~~~-----~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~ 78 (723)
T 4gyw_A 6 PTHADSLNNLANIK-----REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFAD 78 (723)
T ss_dssp CHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 33456777888888 999999999999998876 45678999999999999999999999999985 454 56
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
.|..+..++...|++++|.+.|++..+. .| +...+..+..+|.+.|++++|++.|++..+..| +...+..+...+
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 8999999999999999999999999875 44 678899999999999999999999999987788 567999999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCC
Q 046354 423 RLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p 443 (510)
...|++++|.+.+++++++.|
T Consensus 156 ~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHTTCCTTHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhCh
Confidence 999999999999999986544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-09 Score=92.16 Aligned_cols=163 Identities=11% Similarity=-0.032 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-chhHhH
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-EHYSCL 385 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 385 (510)
+..+...+.+.|++++|...|+++.+. .|+. ..+..+..++...|++++|...|+++.+.+.-.+.. ..+..+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 334445556666666666666666653 2221 244555556666666666666666666541111110 122233
Q ss_pred HhHHh------------------hcCChHHHHHHHhhCCCCCCcHH-HH-----------------HHHHHHHHhhCCHH
Q 046354 386 ADILR------------------RAGQVKEAMRVVSKMPPHERDHV-VL-----------------GALLGACRLHGDVR 429 (510)
Q Consensus 386 ~~~~~------------------~~g~~~~A~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~~~~~ 429 (510)
..++. ..|++++|...|+++.+..|+.. .+ ..+...+.+.|+++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 33332 25677777777777766655432 22 24456688899999
Q ss_pred HHHHHHHHHHhcCCCCc---hhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046354 430 MADYIGERLIELQPSSS---GAYVLSANVHAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 475 (510)
+|...|+++++..|+++ ..+..++.+|.+.|++++|++.++.+...
T Consensus 165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 99999999999999986 45889999999999999999999988743
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.5e-10 Score=86.26 Aligned_cols=92 Identities=22% Similarity=0.205 Sum_probs=52.1
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
+..++..+...|++++|...++++....| +...+..+...+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 117 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 33344444444444444444444432222 34455555566666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHH
Q 046354 461 EWDEFAQVRKKME 473 (510)
Q Consensus 461 ~~~~A~~~~~~~~ 473 (510)
++++|...++++.
T Consensus 118 ~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 118 DYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 6666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=98.35 Aligned_cols=208 Identities=9% Similarity=-0.029 Sum_probs=133.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-------C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 046354 181 ITAYVDAGNMAQASELFNLMPQ-------R--NVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 251 (510)
...|...|++++|...|.+..+ + ...+|+.+..+|...|++++|+..+++..+..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------- 107 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------- 107 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------------
Confidence 5566777777777777765543 1 14578888888999999999998888875410
Q ss_pred hhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhc-CChhhHHHH
Q 046354 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNH-GHGFQVFRL 330 (510)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~ 330 (510)
...|+...+ ..+++.+...|... |++++|+..
T Consensus 108 ------------------------------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 108 ------------------------------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp ------------------------------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ------------------------------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHH
Confidence 111222111 22466677778885 888888888
Q ss_pred HHHHHHcCCCC-C----chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcc-----hhHhHHhHHhhcCChHHHHH
Q 046354 331 FARMLKSGTKP-D----EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAE-----HYSCLADILRRAGQVKEAMR 400 (510)
Q Consensus 331 ~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~ 400 (510)
|++..+..... + ..++..+...+...|++++|...|++..+...-.+... .+..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877631100 1 24567777888888888888888888886411111111 45667777888888999998
Q ss_pred HHhhCCCCCCcHH------HHHHHHHHHH--hhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 401 VVSKMPPHERDHV------VLGALLGACR--LHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 401 ~~~~~~~~~p~~~------~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
.+++..+..|+.. .+..++.++. ..+++++|+..|+++..++|.....+..
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~ 279 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNK 279 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 8888876666422 2344455554 3467888888888777776655433333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=5.6e-10 Score=87.32 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .+.+...+..++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 357788899999999999999999998864 445677888888899999999999999999875 24466788889999
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+...|++++|.+.++++.+..| +...+..+...+...|++++|...++++++..|++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999998876555 67788889999999999999999999999988863
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-10 Score=116.75 Aligned_cols=170 Identities=12% Similarity=-0.070 Sum_probs=146.2
Q ss_pred ccccChhhHHHHhcccC--------C---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC
Q 046354 288 GFQLDVNSARLAFERLE--------A---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA 356 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 356 (510)
...|++++|.+.+++.. + .+...|..+...|...|++++|...|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67889999999999876 3 456788889999999999999999999999853 44556888888899999
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIG 435 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~ 435 (510)
|++++|...|+++.+. .+.+...+..+..++.+.|++++ .+.|++..+..| +...|..+..++...|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999975 23367888999999999999999 999999887777 6678999999999999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 436 ERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 436 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
+++++++|++...+..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999877665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-10 Score=92.33 Aligned_cols=159 Identities=8% Similarity=0.007 Sum_probs=117.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH-H
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI-L 389 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 389 (510)
+......+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+. .|++.....+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4455666777888888888888776642 334456777777788888888888888887654 3343333222212 1
Q ss_pred hhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHcCCChHHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS--SGAYVLSANVHAARGEWDEFA 466 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 466 (510)
...+...+|...+++..+..| +...+..+...+...|++++|...|+++++.+|+. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334457778887776677 57788999999999999999999999999999875 458999999999999999999
Q ss_pred HHHHHHH
Q 046354 467 QVRKKME 473 (510)
Q Consensus 467 ~~~~~~~ 473 (510)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=89.57 Aligned_cols=97 Identities=7% Similarity=-0.054 Sum_probs=87.6
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
+...+..+...+.+.|++++|...|++.....| +...|..+..+|...|++++|...|+++++++|+++.++..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455677788888999999999999999887777 6778999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~ 474 (510)
...|++++|+..|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998873
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-08 Score=87.16 Aligned_cols=169 Identities=10% Similarity=-0.072 Sum_probs=140.7
Q ss_pred HHHHhcccCC-CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC----cHHHHHHHHHHHH
Q 046354 296 ARLAFERLEA-KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG----LVEKGRKTFNLMS 370 (510)
Q Consensus 296 a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~~~ 370 (510)
|.+.|++..+ .++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444333 567788889999999999999999999999875 45677777777777 6 8999999999997
Q ss_pred HhhCCCCCcchhHhHHhHHhh----cCChHHHHHHHhhCCCCCCc---HHHHHHHHHHHHh----hCCHHHHHHHHHHHH
Q 046354 371 RAYGFKPRAEHYSCLADILRR----AGQVKEAMRVVSKMPPHERD---HVVLGALLGACRL----HGDVRMADYIGERLI 439 (510)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~ 439 (510)
+. .++..+..|...|.. .+++++|.+.|++..+..|. ...+..|...|.. .+++++|...|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 64 366777888888877 88999999999999877664 7788899999988 789999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHc-C-----CChHHHHHHHHHH
Q 046354 440 ELQPSSSGAYVLSANVHAAR-G-----EWDEFAQVRKKME 473 (510)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~ 473 (510)
+. |.++..+..|+.+|... | +.++|..+|++..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 88 67778899999999764 3 8999999999887
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-09 Score=97.62 Aligned_cols=177 Identities=12% Similarity=0.033 Sum_probs=135.0
Q ss_pred ChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCC-chhHHHHHHhcCcCCcHHHHHHHH
Q 046354 292 DVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS----GTKPD-EITFVGVLSDCSHAGLVEKGRKTF 366 (510)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 366 (510)
++++|...|.+. ...|...|++++|...|++.... |-+++ ..+|..+...|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777765543 56788899999999999887653 32222 457888889999999999999999
Q ss_pred HHHHHhhCCCCC----cchhHhHHhHHhhc-CChHHHHHHHhhCCCCCCc-------HHHHHHHHHHHHhhCCHHHHHHH
Q 046354 367 NLMSRAYGFKPR----AEHYSCLADILRRA-GQVKEAMRVVSKMPPHERD-------HVVLGALLGACRLHGDVRMADYI 434 (510)
Q Consensus 367 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~~~~~~A~~~ 434 (510)
++..+...-..+ ..++..+..+|... |++++|+..+++..+..|+ ..++..+...+...|++++|...
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988765211112 34678889999996 9999999999988754331 34688889999999999999999
Q ss_pred HHHHHhcCCCCch-------hHHHHHHHHHHcCCChHHHHHHHHHHHhhccccce
Q 046354 435 GERLIELQPSSSG-------AYVLSANVHAARGEWDEFAQVRKKMERRVKKVASF 482 (510)
Q Consensus 435 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 482 (510)
|+++++..|+++. .+..++.++...|++++|+..+++.. ...|++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~ 232 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNF 232 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC----
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCC
Confidence 9999999887754 46778899999999999999998544 444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-07 Score=89.82 Aligned_cols=376 Identities=10% Similarity=0.016 Sum_probs=223.3
Q ss_pred CC-ChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCC-hhhHHHHHH
Q 046354 7 TG-KVKEATKLFDEMSQ--PDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGR-VDEARKVFD 82 (510)
Q Consensus 7 ~g-~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~~A~~~~~ 82 (510)
.| +++.|..+|+.+.. |. |+++.+..+|++.....|+...|...+....+.++ .+....+|+
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 36667777766641 33 88999999999999988999999999888877763 466777887
Q ss_pred hhcc------CChhhHHHHHHHHHc----CCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHH
Q 046354 83 EIYE------GNVYSWTSLISGYFK----ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTG 152 (510)
Q Consensus 83 ~~~~------~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~ 152 (510)
.... .+...|...+..+.. .|+.+.+.++|++.... |.. .+..+-..|.....- .+..+...++.-
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~-~~~~lw~~Y~~fE~~--~~~~~~~~~~~~ 148 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMG-SLSELWKDFENFELE--LNKITGKKIVGD 148 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCT-THHHHHHHHHHHHHH--HCHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhh-hHHHHHHHHHHHHHH--hccccHHHHHHH
Confidence 7643 355778888776543 46788999999999885 321 112222222111000 001111111111
Q ss_pred HHhcCchHHHHHHHhhCC----CCChhHHHHHHHHHHhcC--C-----HHHHHHHHhhCCC---CChhhHHHHHHHHHhc
Q 046354 153 LERNAMTKLAREYFVQMP----NKDIVAWNAMITAYVDAG--N-----MAQASELFNLMPQ---RNVWTWNAMIDRYARN 218 (510)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 218 (510)
. .+.+..|..+++.+. ..+...|...+..-...+ - .+++..+|+++.. .+...|...+..+.+.
T Consensus 149 ~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 149 T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 1 123333343333322 124446666555432221 1 3456677777654 3467788888888999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHH
Q 046354 219 GPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARL 298 (510)
Q Consensus 219 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 298 (510)
|+.++|..++++.... |....+........... .. +..+...+ ... ..+.+..
T Consensus 227 ~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~~---------------~~~l~~~~-----~~~-~~~~~~~ 279 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---AV---------------YGDLKRKY-----SMG-EAESAEK 279 (493)
T ss_dssp TCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---HH---------------HHHHHHHT-----C----------
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---HH---------------HHHHHHHH-----Hhh-ccchhhh
Confidence 9999999999999987 55443322211111100 00 11111111 000 0000000
Q ss_pred HhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhc-CcCCcHHHHHHHHHHHHHhhCCCC
Q 046354 299 AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDC-SHAGLVEKGRKTFNLMSRAYGFKP 377 (510)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~ 377 (510)
.........|...+....+.++.+.|..+|++. .. .+++...|......- ...++.+.|..+|+...+.+ +.
T Consensus 280 ---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~ 352 (493)
T 2uy1_A 280 ---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PD 352 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TT
T ss_pred ---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CC
Confidence 000012245777777777888899999999998 32 122333443222111 12336999999999999863 33
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE---KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45566777888889999999999999985 256788888888888899999999999987
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=91.35 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhh
Q 046354 174 IVAWNAMITAYVDAGNMAQASELFNLMPQ-----------RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242 (510)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 242 (510)
..++..+..+|...|++++|...+++..+ ....++..+...|...|++++|...+++.....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 115 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------- 115 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------
Confidence 45677888888899999998888877652 134568888888999999999998888875420
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcC
Q 046354 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322 (510)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (510)
.+....-......++..+...|...|
T Consensus 116 ------------------------------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 116 ------------------------------------------------------EKVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp ------------------------------------------------------HHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred ------------------------------------------------------HHHcCCCChHHHHHHHHHHHHHHHcC
Confidence 00000000001235666777788888
Q ss_pred ChhhHHHHHHHHHHc------CCCC-CchhHHHHHHhcCcCCcHHHHHHHHHHHHHhh------CCCC-CcchhHhHHhH
Q 046354 323 HGFQVFRLFARMLKS------GTKP-DEITFVGVLSDCSHAGLVEKGRKTFNLMSRAY------GFKP-RAEHYSCLADI 388 (510)
Q Consensus 323 ~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~ 388 (510)
++++|...+++..+. +..| ...++..+...+...|++++|..+++++.+.. ...+ ....+..+...
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 888888888877664 1122 23467777788888888888888888877531 1122 22233333333
Q ss_pred Hhh------cCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 046354 389 LRR------AGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIEL 441 (510)
Q Consensus 389 ~~~------~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 441 (510)
+.. ...+..+...++......| ...++..+...|...|++++|...++++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 322 2234555555665554444 4557888999999999999999999998754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.00 E-value=8.9e-09 Score=90.96 Aligned_cols=154 Identities=9% Similarity=0.025 Sum_probs=117.1
Q ss_pred ccccChhhHHHHhcccCCC-----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-----CchhHHHHHHhc--C-
Q 046354 288 GFQLDVNSARLAFERLEAK-----DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKP-----DEITFVGVLSDC--S- 354 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~--~- 354 (510)
...|++++|.+++.+.... +...+..++..+.+.|+++.|.+.+++|.+. .| +..+...+..++ .
T Consensus 111 ~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~ 188 (310)
T 3mv2_B 111 AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFA 188 (310)
T ss_dssp HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHH
Confidence 6778999999998887442 4457788899999999999999999999874 67 355666666552 2
Q ss_pred -cCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC----------CC-cHHHHHHHHHHH
Q 046354 355 -HAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH----------ER-DHVVLGALLGAC 422 (510)
Q Consensus 355 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p-~~~~~~~l~~~~ 422 (510)
..++...|..+|+++.+. .|+......+..++.+.|++++|.+.++.+.+. .| ++.+...++...
T Consensus 189 ~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~ 265 (310)
T 3mv2_B 189 TNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLA 265 (310)
T ss_dssp HTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHH
Confidence 344899999999999764 454233334445889999999999999876543 25 566775676666
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
...|+ +|.++++++.+..|++|..
T Consensus 266 ~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 266 LMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHhCh--HHHHHHHHHHHhCCCChHH
Confidence 66777 8999999999999999754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-09 Score=106.86 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=126.7
Q ss_pred ccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHH
Q 046354 290 QLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 366 (510)
.|++++|...|++..+ .+...|..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998876 346789999999999999999999999998853 345668888899999999999999999
Q ss_pred HHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh---CCHHHHHHHHHHHHhcC
Q 046354 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH---GDVRMADYIGERLIELQ 442 (510)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 442 (510)
++..+. .+.+...+..+..+|.+.|++++|.+.+++..+..| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999875 234677889999999999999999999999886666 567888999999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 046354 443 PSSSGAYVLSA 453 (510)
Q Consensus 443 p~~~~~~~~l~ 453 (510)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-10 Score=89.19 Aligned_cols=105 Identities=14% Similarity=0.024 Sum_probs=85.6
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
+...+..+...+.+.|++++|...|++.....| +...|..+..+|...|++++|...|++++.++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 455666777888888999999988888776666 6778888888888899999999999999999999988899999999
Q ss_pred HHcCCChHHHHHHHHHHHhhccccce
Q 046354 457 AARGEWDEFAQVRKKMERRVKKVASF 482 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~~~~~~p~~ 482 (510)
...|++++|+..|++..+..+..|..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999998877544444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-09 Score=104.66 Aligned_cols=150 Identities=11% Similarity=-0.003 Sum_probs=115.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHH
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMR 400 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (510)
.|++++|...+++..+.. +-+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999987752 334568888888999999999999999999863 33467788899999999999999999
Q ss_pred HHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc---CCChHHHHHHHHHH
Q 046354 401 VVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR---GEWDEFAQVRKKME 473 (510)
Q Consensus 401 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 473 (510)
.+++..+..| +...+..+...+...|++++|...++++++.+|+++..+..++.++... |++++|.+.+++..
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999876667 5678899999999999999999999999999999999999999999999 99999999998776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-09 Score=81.73 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=51.3
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
+......|.+.|++++|++.|++..+..| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 33445555555555555555555544444 44455555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHH
Q 046354 461 EWDEFAQVRKKME 473 (510)
Q Consensus 461 ~~~~A~~~~~~~~ 473 (510)
++++|++.|++..
T Consensus 96 ~~~~A~~~~~~al 108 (126)
T 4gco_A 96 EWSKAQRAYEDAL 108 (126)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=109.73 Aligned_cols=151 Identities=11% Similarity=-0.026 Sum_probs=134.0
Q ss_pred HhcCChhhHHHHHHHHH--------HcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHh
Q 046354 319 SNHGHGFQVFRLFARML--------KSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390 (510)
Q Consensus 319 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (510)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++.+. .+.+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 77899999999999998 42 2445567888888999999999999999999875 2446788899999999
Q ss_pred hcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 046354 391 RAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVR 469 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (510)
..|++++|.+.|++..+..| +...|..+...+...|++++ +..|+++++.+|+++..+..++.+|...|++++|+..|
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999987777 66788999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHH
Q 046354 470 KKME 473 (510)
Q Consensus 470 ~~~~ 473 (510)
++..
T Consensus 558 ~~al 561 (681)
T 2pzi_A 558 DEVP 561 (681)
T ss_dssp HTSC
T ss_pred Hhhc
Confidence 8554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.8e-09 Score=81.50 Aligned_cols=109 Identities=13% Similarity=-0.038 Sum_probs=90.8
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR 423 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 423 (510)
.+......+.+.|++++|.+.|++..+. .+.++..|..+..+|.+.|++++|+..+++..+..| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555667777888888888888888764 244677888888888999999999999988876666 5778999999999
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
..|++++|...|+++++++|+++..+..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999888877665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=91.91 Aligned_cols=156 Identities=12% Similarity=0.011 Sum_probs=107.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCC---CCC--chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cc
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGT---KPD--EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AE 380 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 380 (510)
+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|...+++..+.+.-..+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 456667777788888888888877654310 111 2456677777877 9999999999888764211111 35
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCCCC---c----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-----
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPHER---D----HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA----- 448 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----- 448 (510)
++..+...|.+.|++++|+..+++..+..| + ...+..++..+...|++++|...|++.+ ..|.....
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 677888899999999999999988764322 1 2256666677778899999999999999 88876543
Q ss_pred HHHHHHHHHHcCCChHHHHH
Q 046354 449 YVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~ 468 (510)
...++.++ ..|+.+.+..+
T Consensus 236 l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHH
Confidence 33344444 56776666553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=8e-09 Score=87.78 Aligned_cols=155 Identities=10% Similarity=-0.026 Sum_probs=111.1
Q ss_pred ccccChhhHHHHhcccCC--C-ChhhHHH----------------HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH
Q 046354 288 GFQLDVNSARLAFERLEA--K-DVVSWTA----------------MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 348 (510)
...|++++|...|++... | +...|.. +..+|.+.|++++|...|++..+.. +-+...+..
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 93 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEA 93 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 677888999888888765 2 3345555 7888888899999999998888753 345567788
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC--hHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhC
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ--VKEAMRVVSKMPPHERDHVVLGALLGACRLHG 426 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 426 (510)
+...+...|++++|...|+++.+. -+.++..+..+..+|...|. .+.+...++......|....+.....++...|
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~ 171 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc
Confidence 888888889999999999888874 23356777777777765543 45566677776633333344555566667778
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 046354 427 DVRMADYIGERLIELQPSS 445 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~~ 445 (510)
++++|...|++++++.|++
T Consensus 172 ~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 172 RYEKARNSLQKVILRFPST 190 (208)
T ss_dssp THHHHHHHHHHHTTTSCCH
T ss_pred CHHHHHHHHHHHHHhCCCH
Confidence 8899999999988888874
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=9.4e-08 Score=86.02 Aligned_cols=161 Identities=13% Similarity=0.011 Sum_probs=123.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC-CCCCch----hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc----chhH
Q 046354 313 AMILAYSNHGHGFQVFRLFARMLKSG-TKPDEI----TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA----EHYS 383 (510)
Q Consensus 313 ~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ 383 (510)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.+...-.++. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677889999999999999988742 122211 23346667778889999999999998741112222 2688
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCC-------CCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhH
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPP-------HER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS------SGAY 449 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~ 449 (510)
.+...|...|++++|...++++.+ ..+ ...++..+...|...|++++|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999887762 222 23478889999999999999999999999655433 4569
Q ss_pred HHHHHHHHHcCC-ChHHHHHHHHHH
Q 046354 450 VLSANVHAARGE-WDEFAQVRKKME 473 (510)
Q Consensus 450 ~~l~~~~~~~g~-~~~A~~~~~~~~ 473 (510)
..++.+|...|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999996 599999999887
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-08 Score=84.62 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHhccccCCC-hhHHHH----------------HHHHHHhcCChhhHHHHHHhhcc--
Q 046354 26 VSCASMITVFLRNHDLPKAEALFRAMPESQRN-IVAESA----------------MIDGYVKAGRVDEARKVFDEIYE-- 86 (510)
Q Consensus 26 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~----------------li~~~~~~~~~~~A~~~~~~~~~-- 86 (510)
..+......+.+.|++++|+..|++..+..|+ ...+.. +..++.+.|++++|...|++.++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33444556678899999999999999888774 455666 78888899999999999988854
Q ss_pred C-ChhhHHHHHHHHHcCCChHHHHHHHHhccccCCC
Q 046354 87 G-NVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKN 121 (510)
Q Consensus 87 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 121 (510)
| +..++..+...+...|++++|...|++..+..|+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3 5678888888899999999999999988876443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=7.3e-09 Score=81.98 Aligned_cols=102 Identities=13% Similarity=-0.032 Sum_probs=81.6
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
...+..+...+.+.|++++|...|++.....| +...|..+..++...|++++|...|+++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44455667778888888888888888776666 66678888888888889999999999988888888888888888888
Q ss_pred HcCCChHHHHHHHHHHHhhcccc
Q 046354 458 ARGEWDEFAQVRKKMERRVKKVA 480 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~~~~~~~~p 480 (510)
..|++++|++.|++..+..+..|
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HcCCHHHHHHHHHHHHHhCCCCc
Confidence 89999999888887774444444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-09 Score=94.38 Aligned_cols=172 Identities=9% Similarity=-0.001 Sum_probs=132.3
Q ss_pred ccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC----CCC-chhHHHHHHhcCcCCcHHHHHH
Q 046354 290 QLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGT----KPD-EITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~----~p~-~~~~~~li~~~~~~g~~~~a~~ 364 (510)
.++++.|...|.+ ....|...|++++|...|.+..+... .+. ..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4677777776543 46678889999999999988765311 111 3477888888999999999999
Q ss_pred HHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHhhCCHHHHHH
Q 046354 365 TFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-------DHVVLGALLGACRLHGDVRMADY 433 (510)
Q Consensus 365 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~~~~~~A~~ 433 (510)
.+++..+.+.-..+ ..++..+..+|.. |++++|+..+++..+..| ...++..+...+...|++++|..
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988764211112 3567788889988 999999999988764422 14578888999999999999999
Q ss_pred HHHHHHhcCCCCc------hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 434 IGERLIELQPSSS------GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 434 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.|+++++..|.+. ..+..++.++...|++++|...+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999998766543 246777888889999999999999765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-08 Score=85.90 Aligned_cols=121 Identities=8% Similarity=-0.055 Sum_probs=95.9
Q ss_pred HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC
Q 046354 348 GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG 426 (510)
Q Consensus 348 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~ 426 (510)
.+...+...|++++|...+++.. .|++..+..+...|.+.|++++|...+++..+..| +...+..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34445556677777777766552 44666777777778888888888888877765555 5668888888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 427 DVRMADYIGERLIELQPSSS----------------GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 427 ~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
++++|...|+++++..|.+. ..+..++.+|...|++++|...+++..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999888877 789999999999999999999999877
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-07 Score=91.96 Aligned_cols=121 Identities=14% Similarity=0.001 Sum_probs=68.1
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC-ChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG-QVKEAMRVVSKMPPHER-DHVVLGALLGACR 423 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 423 (510)
|...+....+.++.+.|..+|+.+ +. . ..+..+|...+..-...| +.+.|..+|+...+..| ++..|...+....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 333444444455677777777776 32 1 123333332222222223 57777777766654334 2344555555556
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|+.+.|..+|+++ +.....+...+..-...|+.+.+.++++++.
T Consensus 366 ~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777777777765 2334456666666667787777777777766
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-07 Score=85.59 Aligned_cols=163 Identities=11% Similarity=-0.026 Sum_probs=124.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc------hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----c
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE------ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----A 379 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 379 (510)
.+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|...+++..+...-..+ .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 45556778889999999999999888753 2222 12334555667889999999999998753111112 3
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCC---CCCc-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------C
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPP---HERD-----HVVLGALLGACRLHGDVRMADYIGERLIELQPS------S 445 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~ 445 (510)
.+++.+...|...|++++|...+++..+ ..|+ ..++..+...|...|++++|...++++++..++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778899999999999999999987752 2232 258889999999999999999999999865432 1
Q ss_pred chhHHHHHHHHHHcCCChHH-HHHHHHHH
Q 046354 446 SGAYVLSANVHAARGEWDEF-AQVRKKME 473 (510)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 473 (510)
...|..++.+|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45588999999999999999 78788765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-08 Score=82.27 Aligned_cols=126 Identities=11% Similarity=-0.022 Sum_probs=95.2
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
+..+...+...|+++.|...++...+. .+.+...+..++..+...|++++|...+++..+..| +...+..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444455555666667777666666653 233556667777777778888888888777765555 56688888889999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHHcCCChHHHHHHHHHH
Q 046354 425 HGDVRMADYIGERLIELQPSSSGAYVLSANV--HAARGEWDEFAQVRKKME 473 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 473 (510)
.|++++|...++++++..|.++..+..+..+ +...|++++|++.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999998887544444 888999999999998776
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.4e-09 Score=85.86 Aligned_cols=127 Identities=9% Similarity=0.097 Sum_probs=71.8
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH-HhhcCCh-
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI-LRRAGQV- 395 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 395 (510)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .+.++..+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 344566666666666665542 334455666666666666666666666666653 12244455555555 5566665
Q ss_pred -HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch
Q 046354 396 -KEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG 447 (510)
Q Consensus 396 -~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 447 (510)
++|...++++.+..| +...+..+...+...|++++|...++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 666666666554444 3445556666666666666666666666666666543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.7e-08 Score=89.21 Aligned_cols=133 Identities=11% Similarity=-0.013 Sum_probs=113.4
Q ss_pred CCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHH
Q 046354 340 KPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALL 419 (510)
Q Consensus 340 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 419 (510)
+.+...+..+...+...|++++|...++++.+. -+.+...+..+..++.+.|++++|...++++....|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 444556777778888999999999999999875 234677888999999999999999999999997788666443333
Q ss_pred H-HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 420 G-ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 420 ~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
. .+...++.++|...++++++.+|+++..+..++.+|...|++++|+..++++.+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3 366778889999999999999999999999999999999999999999998873
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=85.30 Aligned_cols=156 Identities=13% Similarity=0.024 Sum_probs=121.9
Q ss_pred ccccChhhHHHHhcccCC--CC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCch----hHHHHHHhcC---
Q 046354 288 GFQLDVNSARLAFERLEA--KD----VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEI----TFVGVLSDCS--- 354 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~--- 354 (510)
...|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+..+..++.
T Consensus 15 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 15 LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHHHhhh
Confidence 788999999999999875 33 246778889999999999999999999985 34432 2333333332
Q ss_pred ---------------cCCcHHHHHHHHHHHHHhhCCCCC-cchh-----------------HhHHhHHhhcCChHHHHHH
Q 046354 355 ---------------HAGLVEKGRKTFNLMSRAYGFKPR-AEHY-----------------SCLADILRRAGQVKEAMRV 401 (510)
Q Consensus 355 ---------------~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 401 (510)
..|+.++|...|+++.+. .|+ .... ..+...|.+.|++++|...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 169 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNR 169 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 468999999999999874 343 3332 2456678899999999999
Q ss_pred HhhCCCCCCcH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 402 VSKMPPHERDH----VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 402 ~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
|+++.+..|+. ..+..+..++.+.|++++|...++.+....|++...
T Consensus 170 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 170 VEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 99987666643 468888999999999999999999999988887543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-08 Score=80.27 Aligned_cols=153 Identities=7% Similarity=0.003 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CChhhHHHHHHH-HHcC
Q 046354 27 SCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GNVYSWTSLISG-YFKA 102 (510)
Q Consensus 27 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~ 102 (510)
.+..+...+.+.|++++|+..|++..+..| +...+..+..++...|++++|...++...+ |+...+..+... +...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 344555566667777777777777666555 445566666667777777777777776643 322222211111 1122
Q ss_pred CChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC--CCC---hhHH
Q 046354 103 RQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP--NKD---IVAW 177 (510)
Q Consensus 103 g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~---~~~~ 177 (510)
++...|...|++..+..|+. ...+..+...+...|++++|.+.|+++. .|+ ...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~--------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~ 147 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDN--------------------FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVK 147 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTC--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHH
T ss_pred cccchHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHH
Confidence 22334566666666543432 2233344455556666666776666655 232 3466
Q ss_pred HHHHHHHHhcCCHHHHHHHHhh
Q 046354 178 NAMITAYVDAGNMAQASELFNL 199 (510)
Q Consensus 178 ~~li~~~~~~g~~~~A~~~~~~ 199 (510)
..+..++...|+.++|...|++
T Consensus 148 ~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 148 KTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHH
Confidence 7777777777777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=78.15 Aligned_cols=114 Identities=14% Similarity=0.009 Sum_probs=64.9
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++..+..| +...+..+...+..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 333344444444444444444444431 112334444455555555555555555555443333 45566666777777
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
.|++++|...++++++..|.+...+..++.++...|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777766553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-08 Score=77.49 Aligned_cols=118 Identities=10% Similarity=-0.074 Sum_probs=88.1
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
..+..+...+...|+++.|...+++.... .+.+...+..+...+...|++++|...+++..+..| +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34445555566666666666666666653 233455666777777777888888877777665555 466788888889
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999888999999998888764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-08 Score=75.97 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=81.4
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
..+..+...+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|...++++.+..| +..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555566666666666666666653 223455566677777777777777777776654444 566777888888
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARG 460 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (510)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999988888888888888887776654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=85.08 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=136.8
Q ss_pred ChhhHHHHhcccCC---CChhhHHHHHHHH----Hhc---CChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHH-
Q 046354 292 DVNSARLAFERLEA---KDVVSWTAMILAY----SNH---GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE- 360 (510)
Q Consensus 292 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~- 360 (510)
+++++...++.+.. .+..+|+.--..+ ... +++++++.+++.+.+.. +-+...|..-...+...|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 88888888888776 3445666544444 444 78899999999999863 556677777666666777777
Q ss_pred -HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC------hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH-HHH
Q 046354 361 -KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ------VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV-RMA 431 (510)
Q Consensus 361 -~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~-~~A 431 (510)
+++++++++.+. -+-|-..|+.-..++.+.|+ ++++++.++++....| |...|+.+...+.+.|+. +.+
T Consensus 163 ~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 163 AKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence 899999999875 23355666655555666665 8889998888876677 777888888888887764 445
Q ss_pred HHHHHHHHhcC---CCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 432 DYIGERLIELQ---PSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 432 ~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
..++++..+++ |.++.++..++.+|.+.|+.++|.++++.+...+.+
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh
Confidence 56777766655 778888999999999999999999999988743333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.7e-08 Score=81.61 Aligned_cols=127 Identities=9% Similarity=-0.042 Sum_probs=74.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG 393 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (510)
+...+...|++++|...|++. +.|+...+..+...+...|++++|...+++..+. .+.+...+..+..+|...|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 344444555555555555443 2344445555555555555555555555555543 1223444555555555555
Q ss_pred ChHHHHHHHhhCCCCC----------------C-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 394 QVKEAMRVVSKMPPHE----------------R-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 394 ~~~~A~~~~~~~~~~~----------------p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
++++|.+.+++..+.. | ....+..+...+...|++++|...++++++..|++.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 5555555555444322 2 236778888889999999999999999999888763
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-08 Score=74.11 Aligned_cols=97 Identities=12% Similarity=-0.007 Sum_probs=84.8
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS--SSGAYVLSAN 454 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 454 (510)
+...+..+...+.+.|++++|...+++..+..| +...+..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 566777888888999999999999988775555 5678888889999999999999999999999999 8888999999
Q ss_pred HHHHc-CCChHHHHHHHHHHH
Q 046354 455 VHAAR-GEWDEFAQVRKKMER 474 (510)
Q Consensus 455 ~~~~~-g~~~~A~~~~~~~~~ 474 (510)
++... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 99999 999999999997763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-08 Score=91.91 Aligned_cols=163 Identities=14% Similarity=0.030 Sum_probs=120.1
Q ss_pred cccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHH
Q 046354 289 FQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 365 (510)
..+++++|...++.... .+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+.+.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~ 191 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA 191 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH
Confidence 34455555555555443 23456777777788888888888888887764 3332110 00111111
Q ss_pred HHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 366 FNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
- . .....+..+..+|.+.|++++|+..+++..+..| +...|..+..+|...|++++|...|+++++++|+
T Consensus 192 ~-~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 192 Q-A--------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp H-H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred H-H--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 0 0 1135678889999999999999999999887766 6779999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCChHH-HHHHHHHH
Q 046354 445 SSGAYVLSANVHAARGEWDEF-AQVRKKME 473 (510)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 473 (510)
++..+..++.++...|++++| ...++.|.
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 45666665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=78.35 Aligned_cols=94 Identities=15% Similarity=0.026 Sum_probs=76.8
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
..+..+...+.+.|++++|...|++..+..| +...|..+..++...|++++|...++++++++|+++..+..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3455667777888888888888888776666 567888888888888888888888888888888888888888888888
Q ss_pred cCCChHHHHHHHHHH
Q 046354 459 RGEWDEFAQVRKKME 473 (510)
Q Consensus 459 ~g~~~~A~~~~~~~~ 473 (510)
.|++++|+..+++..
T Consensus 85 ~~~~~~A~~~~~~al 99 (126)
T 3upv_A 85 VKEYASALETLDAAR 99 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHH
Confidence 888888888888776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-08 Score=76.91 Aligned_cols=93 Identities=10% Similarity=-0.093 Sum_probs=84.0
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAAR 459 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (510)
.+..+...+.+.|++++|...+++..+..| +...|..+..++...|++++|+..|+++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 345567788899999999999999887777 6778888999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHH
Q 046354 460 GEWDEFAQVRKKME 473 (510)
Q Consensus 460 g~~~~A~~~~~~~~ 473 (510)
|++++|+..+++..
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999766
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.1e-08 Score=79.80 Aligned_cols=109 Identities=12% Similarity=-0.088 Sum_probs=85.3
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHH
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGA 421 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 421 (510)
...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|+..+++..+..| +...|..+...
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 446667777788888888888888888874 233677778888888888888888888888876666 56688888888
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
+...|++++|...|++++++.|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 88888888888888888888888877654443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=9e-09 Score=81.97 Aligned_cols=105 Identities=11% Similarity=-0.025 Sum_probs=84.8
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
..+..+...+...|++++|...|+.+... -+.++..+..+..++...|++++|...|++.....| +...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 35566667777888888888888888764 234677778888888899999999999988876666 567888888999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 423 RLHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
...|++++|...|++++++.|+++....
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999999999999999999998876543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.8e-08 Score=78.20 Aligned_cols=101 Identities=13% Similarity=-0.047 Sum_probs=87.8
Q ss_pred hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHH
Q 046354 344 ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGAC 422 (510)
Q Consensus 344 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 422 (510)
..+..+...+...|++++|...|+.+.+. -+.++..|..+..+|.+.|++++|...|++..+..| ++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 36667777888999999999999999874 244678888999999999999999999999887777 577899999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 423 RLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 423 ~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
...|++++|...|++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999998864
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=8.4e-08 Score=75.13 Aligned_cols=97 Identities=14% Similarity=0.003 Sum_probs=76.8
Q ss_pred CCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
.+...+..+...+...|++++|...|++.....| +...|..+...+...|++++|...++++++.+|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3556677777778888888888888877765555 466777788888888888888888888888888888888888888
Q ss_pred HHHcCCChHHHHHHHHHH
Q 046354 456 HAARGEWDEFAQVRKKME 473 (510)
Q Consensus 456 ~~~~g~~~~A~~~~~~~~ 473 (510)
|...|++++|+..+++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 888888888888888776
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.3e-06 Score=74.00 Aligned_cols=160 Identities=8% Similarity=0.021 Sum_probs=116.0
Q ss_pred ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChh--hHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc------HH
Q 046354 292 DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGF--QVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL------VE 360 (510)
Q Consensus 292 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~ 360 (510)
+++++..+++++.+ .+..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+...+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 34444444444433 35556666666666777777 9999999999864 4566677666555555565 88
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH-HHHHHhhCCCCC----CcHHHHHHHHHHHHhhCCHHHHHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE-AMRVVSKMPPHE----RDHVVLGALLGACRLHGDVRMADYIG 435 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~----p~~~~~~~l~~~~~~~~~~~~A~~~~ 435 (510)
++++.++.+... .+-|...|+.+...+.+.|+..+ +..+..++.+.. .++..+..++..+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 899999998874 34477888888888888888444 556777766432 37788999999999999999999999
Q ss_pred HHHHh-cCCCCchhHHHHHH
Q 046354 436 ERLIE-LQPSSSGAYVLSAN 454 (510)
Q Consensus 436 ~~~~~-~~p~~~~~~~~l~~ 454 (510)
+.+.+ .+|.....|...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99996 79988777765543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=73.48 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=88.6
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
+...+..+...+.+.|++++|...+++..+..| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455677888899999999999999999887766 6778999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~ 474 (510)
...|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998773
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-07 Score=77.18 Aligned_cols=127 Identities=9% Similarity=-0.139 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcC----ChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCc----CCcHHHHHHHHHHHHHhhCCCCC---
Q 046354 310 SWTAMILAYSNHG----HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSH----AGLVEKGRKTFNLMSRAYGFKPR--- 378 (510)
Q Consensus 310 ~~~~l~~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~--- 378 (510)
.+..+...|.. + ++++|+..|++..+.| +...+..+...|.. .+++++|..+|++..+. .|+
T Consensus 52 a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~ 124 (212)
T 3rjv_A 52 ALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAA 124 (212)
T ss_dssp HHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHH
T ss_pred HHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcch
Confidence 34444444554 4 7888888888887654 45566666666666 78889999999888754 332
Q ss_pred cchhHhHHhHHhh----cCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhh-C-----CHHHHHHHHHHHHhcCC
Q 046354 379 AEHYSCLADILRR----AGQVKEAMRVVSKMPPHERDHVVLGALLGACRLH-G-----DVRMADYIGERLIELQP 443 (510)
Q Consensus 379 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 443 (510)
+..+..|...|.. .+++++|...|++..+..++...+..|...|... | +.++|...|+++.+..+
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6777788888887 7889999999988865545666777787777653 3 89999999999887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.5e-08 Score=79.32 Aligned_cols=124 Identities=10% Similarity=0.058 Sum_probs=93.6
Q ss_pred hcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHH-HHhhCCH-
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGA-CRLHGDV- 428 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~-~~~~~~~- 428 (510)
.+...|++++|...++...+. .+.+...+..+...|...|++++|...+++..+..| +...+..+... +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 356678888888888888764 234667788888888888888888888888775555 56677777777 6677887
Q ss_pred -HHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 429 -RMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 429 -~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
++|...++++++..|+++..+..++.+|...|++++|...++++.+..+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 8888888888888888888888888888888888888888887764333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.4e-08 Score=75.10 Aligned_cols=93 Identities=9% Similarity=-0.022 Sum_probs=81.5
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch-------hHHHH
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG-------AYVLS 452 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l 452 (510)
.+..+...+.+.|++++|++.|++..+..| +...|..+..+|...|++++|+..+++++++.|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 456688889999999999999999887777 6778999999999999999999999999998887653 57778
Q ss_pred HHHHHHcCCChHHHHHHHHHH
Q 046354 453 ANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.++...|++++|++.|++..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 888999999999999999766
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.7e-08 Score=87.92 Aligned_cols=187 Identities=9% Similarity=-0.059 Sum_probs=130.8
Q ss_pred hhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHH
Q 046354 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVL 350 (510)
Q Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 350 (510)
.+..+...+ ...|++++|...|++... .+...|..+..+|...|++++|...+++..+.. +.+...+..+.
T Consensus 6 ~~~~~g~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 6 ELKEQGNRL-----FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHH-----HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred HHHHHHHHH-----HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344455555 888999999999998765 366788889999999999999999999988752 34456788888
Q ss_pred HhcCcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHH
Q 046354 351 SDCSHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 351 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 429 (510)
.++...|++++|...|+...+. .| +...+...+....+..+.......-.... .++......+ ..+ ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNSIEERRI--HQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCC--CCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH-HHH-HHHHHH
Confidence 8899999999999999988764 22 22222223332222222222222222222 2333333333 222 368999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHc-CCChHHHHHHHHHH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANVHAAR-GEWDEFAQVRKKME 473 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 473 (510)
+|.+.++++++.+|++......+...+.+. +++++|.++|+.+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999998877777777777776 77899999998776
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=73.12 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=44.3
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCcH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHH
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERDH----VVLGALLGACRLHGDVRMADYIGERLIELQPSS---SGAYVLSANVHA 457 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 457 (510)
+...+.+.|++++|...|+++.+..|+. ..+..+...+...|++++|...|+++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3344444555555555555444333321 244444455555555555555555555555555 344555555555
Q ss_pred HcCCChHHHHHHHHHH
Q 046354 458 ARGEWDEFAQVRKKME 473 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~~ 473 (510)
..|++++|...++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=71.58 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=43.4
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
..++..+...|++++|...+++.....| +...+..+...+...|++++|...++++++..|+++..+..++.++...|+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence 3344444444455555444444433333 333444444444445555555555555555555544445555555555555
Q ss_pred ChHHHHHHHHHH
Q 046354 462 WDEFAQVRKKME 473 (510)
Q Consensus 462 ~~~A~~~~~~~~ 473 (510)
+++|...+++..
T Consensus 88 ~~~A~~~~~~~~ 99 (118)
T 1elw_A 88 FEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.9e-07 Score=73.04 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=57.3
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSAN 454 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 454 (510)
...+..+...+...|++++|...|++..+..|+ ...+..+...+...|++++|...++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334445555556666666666666665555554 3455555566666666666666666666666666666666666
Q ss_pred HHHHcCCChHHHHHHHHHH
Q 046354 455 VHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~ 473 (510)
+|...|++++|...+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=9.8e-08 Score=73.56 Aligned_cols=111 Identities=13% Similarity=-0.111 Sum_probs=84.1
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR 423 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 423 (510)
.+..+...+...|++++|...|++..+. .+.++..+..+..++.+.|++++|...+++..+..| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455556666777777777777777764 233567777788888888888888888888776666 5668888888899
Q ss_pred hhCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 046354 424 LHGDVRMADYIGERLIELQ------PSSSGAYVLSANVHA 457 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 457 (510)
..|++++|...|+++++++ |+++.....+..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999888 777766666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-07 Score=71.17 Aligned_cols=96 Identities=22% Similarity=0.221 Sum_probs=87.1
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
...+..+...+...|++++|.+.++++.+..| +..++..+...+...|++++|...++++.+..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45677888999999999999999998876555 67788899999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHH
Q 046354 458 ARGEWDEFAQVRKKMER 474 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~~~ 474 (510)
..|++++|..+++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999998873
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-07 Score=70.86 Aligned_cols=110 Identities=9% Similarity=-0.039 Sum_probs=81.4
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR 423 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 423 (510)
.+..+...+...|++++|...++..... .+.++..+..+...+.+.|++++|...+++..+..| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4455555666677777777777777653 233566667777777888888888888877765555 5667888888888
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 424 LHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
..|++++|...++++++..|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999998887777666553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.7e-08 Score=75.99 Aligned_cols=106 Identities=13% Similarity=0.003 Sum_probs=77.6
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACR 423 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~ 423 (510)
.+..+...+...|++++|...|+.+... -+.++..+..+..++.+.|++++|...|++.....| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444555566777777777777777653 233566677777778888888888888887765556 5567778888888
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 424 LHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 424 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
..|++++|...|++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 89999999999999998888887664443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=78.94 Aligned_cols=165 Identities=9% Similarity=-0.085 Sum_probs=108.7
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|+++.+.+.++.... .....+..+...+...|++++|...|++.... .|+...+... ....-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~-- 82 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK-- 82 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH--
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH--
Confidence 455666666666654433 23446777777888888888888888888774 2332211100 00000
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
... .....+..+..+|.+.|++++|...+++..+..| +...+..+..++...|++++|...|++++++.|
T Consensus 83 -~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 83 -KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp -HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred -HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 000 0134667788888999999999999988876666 677888999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCChHHH-HHHHHHH
Q 046354 444 SSSGAYVLSANVHAARGEWDEFA-QVRKKME 473 (510)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 473 (510)
+++..+..++.++...|+.+++. ..+..+.
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC----------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888877777 4455444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.6e-08 Score=73.83 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=58.2
Q ss_pred cCChHHHHHHHhhCCCC---CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHH
Q 046354 392 AGQVKEAMRVVSKMPPH---ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQ 467 (510)
Q Consensus 392 ~g~~~~A~~~~~~~~~~---~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (510)
.|++++|+..|++..+. .| +...+..+...|...|++++|...++++++..|+++..+..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777776655 24 345667777777777888888888888777777777777777777888888888887
Q ss_pred HHHHHHH
Q 046354 468 VRKKMER 474 (510)
Q Consensus 468 ~~~~~~~ 474 (510)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776663
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-07 Score=73.72 Aligned_cols=90 Identities=14% Similarity=-0.015 Sum_probs=70.0
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCCc-------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-------CCC
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHERD-------------HVVLGALLGACRLHGDVRMADYIGERLIEL-------QPS 444 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~ 444 (510)
....+.+.|++++|+..|++..+..|+ ...|..+..++.+.|++++|+..+++++++ +|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 344445555555555555555433333 338888999999999999999999999999 999
Q ss_pred CchhH----HHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 445 SSGAY----VLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 445 ~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++..| ...+.++...|++++|+..|++...
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 98889 9999999999999999999997764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-07 Score=75.94 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=67.4
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
...+..+...+.+.|++++|+..|++..+..| +...|..+..+|...|++++|+..|+++++++|+++..+..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34555666667777777777777777665555 55566777777777777777777777777777777777777777777
Q ss_pred HcCCChHHHHHHHHHHH
Q 046354 458 ARGEWDEFAQVRKKMER 474 (510)
Q Consensus 458 ~~g~~~~A~~~~~~~~~ 474 (510)
..|++++|+..|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777777776653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.55 E-value=5.6e-07 Score=72.93 Aligned_cols=129 Identities=9% Similarity=-0.067 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 457778888999999999999999998863 446678888888999999999999999999875 34467788899999
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHH--HHHHHhhCCHHHHHHHHHHHHh
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGAL--LGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
+...|++++|...+++..+..| +...+..+ +..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999876666 44455333 3347788999999999998763
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.9e-08 Score=83.46 Aligned_cols=181 Identities=8% Similarity=-0.035 Sum_probs=136.1
Q ss_pred cccChhhHHHHhcccCC--C-ChhhHHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCCch--------------
Q 046354 289 FQLDVNSARLAFERLEA--K-DVVSWTAM-------ILAYSNHGHGFQVFRLFARMLKSGTKPDEI-------------- 344 (510)
Q Consensus 289 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l-------~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 344 (510)
..++...|.+.|.+... | ....|..+ ...+.+.++..+++..++.-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46899999999999876 3 34578877 5667776777777776665543 444322
Q ss_pred --------hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCC-C--cHH
Q 046354 345 --------TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE-R--DHV 413 (510)
Q Consensus 345 --------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p--~~~ 413 (510)
....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+...... | ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1122455677899999999999998753 3533366677778999999999999998766332 2 134
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 414 VLGALLGACRLHGDVRMADYIGERLIELQ--PS-SSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 414 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.+..+..++...|++++|+..|++..... |. .+......+.++.+.|+.++|..+|+++..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67888889999999999999999998433 43 344688899999999999999999999983
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.9e-07 Score=71.63 Aligned_cols=110 Identities=14% Similarity=-0.013 Sum_probs=74.6
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHH
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALL 419 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~ 419 (510)
.+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++..+..| +...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444444455555555555555543 2333 44556666777777777777777777665555 566778888
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
..+...|++++|...++++++..|+++..+..+..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88889999999999999999999998877776666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.53 E-value=6.6e-08 Score=93.20 Aligned_cols=123 Identities=11% Similarity=-0.022 Sum_probs=103.3
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
+..+...+...|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|.+.+++..+..| +...+..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334455677889999999999999875 233578889999999999999999999999887777 67789999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHHcCCChHHHHHHH
Q 046354 425 HGDVRMADYIGERLIELQPSSSGAYVLSANV--HAARGEWDEFAQVRK 470 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 470 (510)
.|++++|...|+++++..|+++..+..++.+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998888888 888999999999987
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.1e-07 Score=76.01 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=75.2
Q ss_pred hHHHHHHhcCcCCcHHHHHHHHHHHHHhhC---CCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC---CC-c----H
Q 046354 345 TFVGVLSDCSHAGLVEKGRKTFNLMSRAYG---FKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH---ER-D----H 412 (510)
Q Consensus 345 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p-~----~ 412 (510)
.+..+...+...|++++|...+++..+... ..| ...++..+...+...|++++|...+++..+. .+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 444444455555555555555555443210 111 2334555666666667766666666554432 12 1 2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC--CCch----hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQP--SSSG----AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.++..+...+...|++++|...+++.++..+ .++. .+..++.++...|++++|.+.+++..
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3566667777778888888888888774322 1111 24677778888888888888887776
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.4e-07 Score=70.70 Aligned_cols=97 Identities=19% Similarity=0.064 Sum_probs=87.5
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
+...+..++..+...|++++|...+++..+..| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 455677788899999999999999998876656 6778889999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~ 474 (510)
...|++++|...+++..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 999999999999998773
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=6.3e-07 Score=79.92 Aligned_cols=188 Identities=11% Similarity=-0.031 Sum_probs=127.6
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc---CChhhHHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE---GNVYSWTSLISGY 99 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 99 (510)
+...+..+...+.+.|++++|+..|++.....| +...|..+..++.+.|++++|...++...+ .+...+..+..+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566788888999999999999999999998877 677888899999999999999999999966 3557888999999
Q ss_pred HcCCChHHHHHHHHhccccCCCh-hhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHH
Q 046354 100 FKARQVDEGRRLFDRMPLKLKNV-VSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWN 178 (510)
Q Consensus 100 ~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 178 (510)
...|++++|...|++..+..|+. ..+...+... .+..........-......+.....
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~i~~ 141 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA---------------------LRIAKKKRWNSIEERRIHQESELHS 141 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH---------------------HHHHHHHHHHHHHHTCCCCCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999987752321 1111111110 0111111111122222244444444
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhc-CChHHHHHHHHHHHHC
Q 046354 179 AMITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARN-GPEGAAMKLLNLMFQS 234 (510)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~ 234 (510)
.+... ..|+.++|.+.++...+ |+ ......+...+.+. +.+++|.++|.++.+.
T Consensus 142 ~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 142 YLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44332 36889999998888766 33 23333444444444 6688899999887653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.8e-07 Score=74.56 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
..|..+..+|.+.|++++|...++++++++|+++..|..++.+|...|++++|...|++..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-07 Score=86.52 Aligned_cols=142 Identities=6% Similarity=-0.073 Sum_probs=81.8
Q ss_pred hhhhhhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHH
Q 046354 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGV 349 (510)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 349 (510)
...+..+...+ .+.|++++|...|++... |+...+ ..+.+..+ .. .....|..+
T Consensus 147 a~~~~~~g~~~-----~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~-~~-------~~~~~~~nl 202 (336)
T 1p5q_A 147 STIVKERGTVY-----FKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKA-QA-------LRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHH-----HHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHH-HH-------HHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHH-HH-------HHHHHHHHH
Confidence 34566667777 889999999999987764 221000 00111000 00 012344455
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV 428 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 428 (510)
..++...|++++|...++++.+. .+.+...+..+..+|...|++++|...|+++.+..| +...+..+...+...|+.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666553 123455566666666677777777777766665555 455666677777777777
Q ss_pred HHH-HHHHHHHH
Q 046354 429 RMA-DYIGERLI 439 (510)
Q Consensus 429 ~~A-~~~~~~~~ 439 (510)
++| ...|+++.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776 44555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-07 Score=71.84 Aligned_cols=102 Identities=10% Similarity=-0.136 Sum_probs=78.8
Q ss_pred CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHH
Q 046354 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALL 419 (510)
Q Consensus 341 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~ 419 (510)
.+...+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|...+++..+..| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34556666777777778888888888777764 233566777788888888888888888887776556 566888888
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 420 GACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
..+...|++++|...|+++++..|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8899999999999999999988877
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.2e-06 Score=75.11 Aligned_cols=127 Identities=9% Similarity=-0.097 Sum_probs=81.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCC---CC--chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-----cchhH
Q 046354 314 MILAYSNHGHGFQVFRLFARMLKSGTK---PD--EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-----AEHYS 383 (510)
Q Consensus 314 l~~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 383 (510)
+...+...|++++|+..+++..+.... +. ..+++.+...|...|++++|..+++++.+.....|+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 444556667777777777776643111 11 235666667777777777777777777632111222 14667
Q ss_pred hHHhHHhhcCChHHHHHHHhhCCCCCC-------cHHHHHHHHHHHHhhCCHHHH-HHHHHHHHh
Q 046354 384 CLADILRRAGQVKEAMRVVSKMPPHER-------DHVVLGALLGACRLHGDVRMA-DYIGERLIE 440 (510)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 440 (510)
.++..|.+.|++++|...+++..+..+ -..+|..+...|...|++++| ...+++++.
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 777778888888888877776543211 155777888888888888888 777887763
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.3e-07 Score=66.96 Aligned_cols=102 Identities=14% Similarity=-0.029 Sum_probs=77.1
Q ss_pred chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc---HHHHHHHH
Q 046354 343 EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD---HVVLGALL 419 (510)
Q Consensus 343 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~ 419 (510)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+++..+..|+ ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 345666667777778888888888777764 2335666777788888888888888888877665554 66778888
Q ss_pred HHHHhh-CCHHHHHHHHHHHHhcCCCCc
Q 046354 420 GACRLH-GDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 420 ~~~~~~-~~~~~A~~~~~~~~~~~p~~~ 446 (510)
..+... |++++|.+.++++....|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888889988888888888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-05 Score=69.15 Aligned_cols=180 Identities=9% Similarity=-0.073 Sum_probs=134.5
Q ss_pred hcCChhhHHHHHHhccccCCC-hhHHHHH-------HHHHHhcCChhhHHHHHHhhcc--C-------C-----------
Q 046354 37 RNHDLPKAEALFRAMPESQRN-IVAESAM-------IDGYVKAGRVDEARKVFDEIYE--G-------N----------- 88 (510)
Q Consensus 37 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~l-------i~~~~~~~~~~~A~~~~~~~~~--~-------~----------- 88 (510)
+.+++..|.+.|.++....|+ ...|..+ ...+.+.++..++...+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 689999999999999988784 5677777 4666666666666666665533 1 1
Q ss_pred ----hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHH
Q 046354 89 ----VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE 164 (510)
Q Consensus 89 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~ 164 (510)
...+..+...+...|++++|.++|+.+....|+.. ....+...+.+.+++++|+.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---------------------~~~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL---------------------VAWMKAVVYGAAERWTDVID 156 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---------------------HHHHHHHHHHHcCCHHHHHH
Confidence 11345567788899999999999999987545432 22233446788899999999
Q ss_pred HHhhCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 165 YFVQMPN-KD----IVAWNAMITAYVDAGNMAQASELFNLMPQ-R-----NVWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 165 ~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
.|+.... ++ ...+..+..++...|++++|+..|++... + ..........++.+.|+.++|...|+++..
T Consensus 157 ~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9987763 32 23678889999999999999999998853 3 234567778889999999999999999988
Q ss_pred CCCCCC
Q 046354 234 SRFMPN 239 (510)
Q Consensus 234 ~g~~p~ 239 (510)
. .|+
T Consensus 237 ~--~P~ 240 (282)
T 4f3v_A 237 T--HPE 240 (282)
T ss_dssp H--SCC
T ss_pred c--CCc
Confidence 4 455
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-06 Score=72.98 Aligned_cols=155 Identities=14% Similarity=-0.009 Sum_probs=115.4
Q ss_pred ccccChhhHHH---HhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCC-CchhHHHHHHhcCcCCcH
Q 046354 288 GFQLDVNSARL---AFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKS----GTKP-DEITFVGVLSDCSHAGLV 359 (510)
Q Consensus 288 ~~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~ 359 (510)
...|++++|.+ .+.........++..+...+...|++++|...+++.... |..| ....+..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 56789999999 665543345678889999999999999999999988762 2222 234677778888999999
Q ss_pred HHHHHHHHHHHHhhCCCC-C----cchhHhHHhHHhhcCChHHHHHHHhhCCCC---CCc----HHHHHHHHHHHHhhCC
Q 046354 360 EKGRKTFNLMSRAYGFKP-R----AEHYSCLADILRRAGQVKEAMRVVSKMPPH---ERD----HVVLGALLGACRLHGD 427 (510)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~~~ 427 (510)
++|...+++..+...-.+ + ...+..+...+...|++++|...+++..+. .++ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 999999998876422223 2 345678889999999999999998876532 112 2346778888999999
Q ss_pred HHHHHHHHHHHHhcC
Q 046354 428 VRMADYIGERLIELQ 442 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~ 442 (510)
+++|...+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8.2e-07 Score=85.16 Aligned_cols=162 Identities=13% Similarity=0.052 Sum_probs=111.5
Q ss_pred ccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHH
Q 046354 290 QLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTF 366 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 366 (510)
.+++++|...|+.... .....|..+...|.+.|++++|...|++..+. .|+...+ . .+...
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~--- 310 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK--- 310 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH---
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH---
Confidence 3445555555544333 13346667777777788888888888777763 2222110 0 01100
Q ss_pred HHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 367 NLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.... .....|..+..+|.+.|++++|+..++++.+..| +...|..+..+|...|++++|...|+++++++|++
T Consensus 311 -~~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 311 -ASES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp -HHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred -HHHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 0100 1235677889999999999999999999887766 67789999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCChHHHH-HHHHHH
Q 046354 446 SGAYVLSANVHAARGEWDEFAQ-VRKKME 473 (510)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 473 (510)
...+..++.++...|++++|.+ .++.|.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988774 355443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=3.9e-07 Score=69.49 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=73.1
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
+..+...+...|++++|...++.+.+. -+.+...+..+..++.+.|++++|+..+++..+..| +...+..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444555667778888888888888764 233677777888888888888888888888876667 56688888888888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCc
Q 046354 425 HGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
.|++++|...++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8999999999999988888764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.40 E-value=5e-07 Score=69.76 Aligned_cols=109 Identities=6% Similarity=-0.025 Sum_probs=60.9
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc--------HHHHHHH
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD--------HVVLGAL 418 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~l 418 (510)
..+...+...|+++.|...++...+. .+.+...+..+...+...|++++|...+++..+..|+ ..++..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33444444445555555555554442 1223444455555555555555555555554433221 4566667
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 046354 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAA 458 (510)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (510)
...+...|++++|...++++++..| ++.....+..+...
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7777777888888888888777777 35555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.4e-06 Score=65.80 Aligned_cols=105 Identities=13% Similarity=0.021 Sum_probs=75.8
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc---chhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----HHHHHHHHHH
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA---EHYSCLADILRRAGQVKEAMRVVSKMPPHERD----HVVLGALLGA 421 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~ 421 (510)
+...+...|++++|...|+.+.+. .+.++ ..+..+..++.+.|++++|...+++..+..|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 444556677777777777777764 12223 36667777888888888888888877655553 5567788888
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 046354 422 CRLHGDVRMADYIGERLIELQPSSSGAYVLSANV 455 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 455 (510)
+...|++++|...|+++++..|+++........+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 8999999999999999999999887655444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-07 Score=71.16 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=72.6
Q ss_pred cCCcHHHHHHHHHHHHHhhC--CCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYG--FKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMA 431 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A 431 (510)
..|++++|...|++..+. + -+.+...+..+..+|.+.|++++|...+++..+..| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 357778888888888753 2 122456778888889999999999999998876667 567888888999999999999
Q ss_pred HHHHHHHHhcCCCCchhH
Q 046354 432 DYIGERLIELQPSSSGAY 449 (510)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~ 449 (510)
...++++++..|+++...
T Consensus 81 ~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHH
Confidence 999999999999987653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=3.5e-07 Score=76.83 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=47.7
Q ss_pred hhhhhhhhccccccccccChhhHHHHhcccCC---CCh----------------hhHHHHHHHHHhcCChhhHHHHHHHH
Q 046354 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDV----------------VSWTAMILAYSNHGHGFQVFRLFARM 334 (510)
Q Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m 334 (510)
.+..+...+ ...|++++|...|++... .+. ..|..+..+|...|++++|+..+++.
T Consensus 40 ~~~~~g~~~-----~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 40 DIKEEGNEF-----FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHH-----HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344556666 889999999999987754 121 34444444445555555555555544
Q ss_pred HHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHH
Q 046354 335 LKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 335 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 370 (510)
.+.. +.+...+..+..++...|++++|...|++..
T Consensus 115 l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 115 LKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4431 2223333334444444444444444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-06 Score=76.86 Aligned_cols=231 Identities=11% Similarity=0.009 Sum_probs=132.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccc
Q 046354 208 WNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDW 287 (510)
Q Consensus 208 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 287 (510)
++.+-....+.+..++|++++++++. +.|+..|. |+.....+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~--~nP~~yta-------------------------------Wn~R~~iL----- 98 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVR--MNPAHYTV-------------------------------WQYRFSLL----- 98 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHH-------------------------------HHHHHHHH-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH--hCchhHHH-------------------------------HHHHHHHH-----
Confidence 33444444556667789999999877 34443332 11111111
Q ss_pred cccc-ChhhHHHHhcccCC---CChhhHHHHHHHHHhc-C-ChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHH-
Q 046354 288 GFQL-DVNSARLAFERLEA---KDVVSWTAMILAYSNH-G-HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVE- 360 (510)
Q Consensus 288 ~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~- 360 (510)
...| .++++...++.+.. .+..+|+.-...+.+. + ++++++++++.+.+.. +-|...|+.-...+.+.|..+
T Consensus 99 ~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 99 TSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc
Confidence 2333 46677777776654 3445666655555554 5 7778888887777642 344555555444444444444
Q ss_pred -------HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC-------hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 361 -------KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ-------VKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 361 -------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
+++++++++.+. .+-|...|+....++.+.++ ++++++.++++....| |...|+.+-..+.+.
T Consensus 178 ~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777777777764 23355666666666666665 5777777777665566 566776666655555
Q ss_pred CCH--------------------HHHHHHHHHHHhcC------CCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccc
Q 046354 426 GDV--------------------RMADYIGERLIELQ------PSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKV 479 (510)
Q Consensus 426 ~~~--------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 479 (510)
|+. .........+.... +.++.+...++.+|.+.|+.++|.++++.+.....++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 443 22222222222221 3455557778888888888888888888876444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.37 E-value=6.2e-07 Score=69.21 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=84.3
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC-------chhHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS-------SGAYVL 451 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~ 451 (510)
..+..+...+...|++++|...+++..+..| +...+..+...+...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4567788899999999999999998876655 67788889999999999999999999999888776 777999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHH
Q 046354 452 SANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++.+|...|++++|.+.+++...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999998873
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.4e-05 Score=67.85 Aligned_cols=230 Identities=11% Similarity=0.019 Sum_probs=148.5
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHH
Q 046354 184 YVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNG-PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLA 259 (510)
Q Consensus 184 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 259 (510)
..+.+..++|+++++.+.. .+..+|+.--..+...| ++++++..++.+.... |.
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PK-------------------- 121 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LK-------------------- 121 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CC--------------------
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CC--------------------
Confidence 3344455678888877765 34456777666777777 4888888888887643 22
Q ss_pred HHHHHHhCCCcchhhhhhhhhhccccccccc-c-ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChh--------h
Q 046354 260 HALAIRLGFEQETSLTYKCTCHYVFWDWGFQ-L-DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGF--------Q 326 (510)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--------~ 326 (510)
+..+|+.....+ ... + +.+++..+++++.+ .|..+|+--.-.+.+.|.++ +
T Consensus 122 -----------ny~aW~hR~wlL-----~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 122 -----------SYQVWHHRLLLL-----DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp -----------CHHHHHHHHHHH-----HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred -----------cHHHHHHHHHHH-----HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 112222221111 222 3 56677777777776 34556666555555555555 8
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc-------HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCCh----
Q 046354 327 VFRLFARMLKSGTKPDEITFVGVLSDCSHAGL-------VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV---- 395 (510)
Q Consensus 327 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---- 395 (510)
+++.++++.+.. +-|...|+.....+.+.+. +++++++++++... .+-|...|+.+-..+.+.|+.
T Consensus 186 ELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 186 ELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccc
Confidence 999999999864 4566778777777776665 67888888888864 344677777766666666653
Q ss_pred ----------------HHHHHHHhhCCCC-------CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHH-hcCCCCchhHHH
Q 046354 396 ----------------KEAMRVVSKMPPH-------ERDHVVLGALLGACRLHGDVRMADYIGERLI-ELQPSSSGAYVL 451 (510)
Q Consensus 396 ----------------~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~ 451 (510)
....++..++... .+....+..++..|...|+.++|.++++.+. +.+|-....+.-
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 3445555555433 2577888999999999999999999999987 778876555554
Q ss_pred HHH
Q 046354 452 SAN 454 (510)
Q Consensus 452 l~~ 454 (510)
.+.
T Consensus 343 ~~~ 345 (349)
T 3q7a_A 343 RRR 345 (349)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=78.50 Aligned_cols=153 Identities=9% Similarity=-0.112 Sum_probs=117.3
Q ss_pred ccccChhhHHHHhcccCCC-----C----hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCc----hhHHHHHHhc
Q 046354 288 GFQLDVNSARLAFERLEAK-----D----VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDE----ITFVGVLSDC 353 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~li~~~ 353 (510)
...|++++|...+++.... + ...+..+...+...|++++|+..+++..+.... ++. .+++.+...|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 7889999999999887651 1 113334666777788999999999999984322 221 2588888999
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCC----C-CcchhHhHHhHHhhcCChHHHHHHHhhCCCC------CC-cHHHHHHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFK----P-RAEHYSCLADILRRAGQVKEAMRVVSKMPPH------ER-DHVVLGALLGA 421 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~l~~~ 421 (510)
...|++++|..+++++.+...-. + ...++..+...|.+.|++++|...+++..+. .+ -..+|..+..+
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 245 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC 245 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 99999999999999998532111 1 2347788999999999999999999877543 12 25688889999
Q ss_pred HHhhC-CHHHHHHHHHHHHh
Q 046354 422 CRLHG-DVRMADYIGERLIE 440 (510)
Q Consensus 422 ~~~~~-~~~~A~~~~~~~~~ 440 (510)
+...| ++++|...+++++.
T Consensus 246 ~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 246 LRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHH
Confidence 99999 56999999999884
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.3e-06 Score=64.89 Aligned_cols=101 Identities=12% Similarity=0.128 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--CC--------hhhHHH
Q 046354 26 VSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--GN--------VYSWTS 94 (510)
Q Consensus 26 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~--------~~~~~~ 94 (510)
.++..+...+.+.|++++|+..|++..+..| +...|+.+..+|...|++++|.+.++..++ |+ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4567788899999999999999999998877 567888899999999999999999999854 22 136777
Q ss_pred HHHHHHcCCChHHHHHHHHhccccCCChhhHH
Q 046354 95 LISGYFKARQVDEGRRLFDRMPLKLKNVVSWT 126 (510)
Q Consensus 95 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 126 (510)
+..++...|++++|++.|++.....||.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 88889999999999999999877667765443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.7e-07 Score=82.05 Aligned_cols=145 Identities=9% Similarity=-0.046 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 45666777777888888888888887764 344331 223344444432221 1267778888
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHHcCCChHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANV-HAARGEWDEFA 466 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~ 466 (510)
|.+.|++++|...+++..+..| +...|..+..+|...|++++|...|+++++++|+++..+..+..+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876666 667888899999999999999999999999999988888888877 44566777888
Q ss_pred HHHHHHH
Q 046354 467 QVRKKME 473 (510)
Q Consensus 467 ~~~~~~~ 473 (510)
..|+.|.
T Consensus 320 ~~~~~~l 326 (338)
T 2if4_A 320 EMYKGIF 326 (338)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 8888776
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=84.53 Aligned_cols=113 Identities=8% Similarity=-0.017 Sum_probs=50.4
Q ss_pred ccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 364 (510)
...|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|.+
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555554433 233445555555555555555555555555431 2223344444455555555555555
Q ss_pred HHHHHHHhhCCCCCcchhHhHHhH--HhhcCChHHHHHHHh
Q 046354 365 TFNLMSRAYGFKPRAEHYSCLADI--LRRAGQVKEAMRVVS 403 (510)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 403 (510)
.++++.+. .+.+...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555443 11122333333333 444455555555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=81.38 Aligned_cols=138 Identities=6% Similarity=-0.095 Sum_probs=103.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
.|..+...+.+.|++++|+..|++..+. .|+.. .... .+...+. .+.+...|..+..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~~--~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAKL--QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGGG--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHHH--HHHHHHHHHHHHHHH
Confidence 4666777777788888888887777652 01100 0000 0111100 112456788899999
Q ss_pred hhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
.+.|++++|+..+++..+..| +...+..+..+|...|++++|...|++++++.|++...+..+..++...++.+++.+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987777 6778999999999999999999999999999999999999999999988888777643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-07 Score=69.29 Aligned_cols=93 Identities=13% Similarity=0.008 Sum_probs=78.7
Q ss_pred CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC------chhHH
Q 046354 378 RAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS------SGAYV 450 (510)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 450 (510)
+...+..+...+.+.|++++|.+.+++..+..| +...+..+..++...|++++|...+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345667788888899999999999998876666 67788889999999999999999999999999998 77788
Q ss_pred HHHHHHHHcCCChHHHHHHH
Q 046354 451 LSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~ 470 (510)
.++.++...|+++.|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888988888888776554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=6e-07 Score=72.60 Aligned_cols=130 Identities=12% Similarity=-0.011 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..+......+.+.|++++|+..|++....- |+ .. ......+.+ +..+ .+.+...+..+..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~--~~------~~-~~~~~~~~~-----~~~~-----~~~~~~~~~nla~~ 72 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRL--DT------LI-LREKPGEPE-----WVEL-----DRKNIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH------HH-HTSCTTSHH-----HHHH-----HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH------hc-ccCCCCHHH-----HHHH-----HHHHHHHHHHHHHH
Confidence 456666677777777777777777766530 00 00 000000000 0000 12234677888999
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS-GAYVLSANVHA 457 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~ 457 (510)
|.+.|++++|...+++..+..| +...|..+..+|...|++++|...|+++++++|+++ .....+..+..
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999887767 677899999999999999999999999999999987 44555544433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=70.34 Aligned_cols=93 Identities=18% Similarity=0.086 Sum_probs=59.6
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCC-----CC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------Cch
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPH-----ER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPS------SSG 447 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~ 447 (510)
++..+...+...|++++|...+++..+. .| ...++..+...+...|++++|...++++++..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3344555555555555555555544321 11 1345666777778888888888888888744321 123
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 448 AYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+..++.++...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 47778888888899988888888766
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.4e-06 Score=63.54 Aligned_cols=76 Identities=12% Similarity=0.021 Sum_probs=44.2
Q ss_pred HHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 398 AMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 398 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|...+++..+..| +...+..+...+...|++++|...|+++++.+|+++..+..++.+|...|++++|...+++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444443444 444555555666666666666666666666666666666666666666666666666666554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.5e-06 Score=80.35 Aligned_cols=165 Identities=6% Similarity=-0.123 Sum_probs=119.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCc----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhh---CCCC-Ccc
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKS-GTKPDE----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAY---GFKP-RAE 380 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~ 380 (510)
++..+...|...|++++|.+.+..+... +..++. ...+.+-..+...|+.+.+..+++...... +..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3567788899999999999999887653 111222 123334455667889999999988876532 1122 234
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCCC------CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCCc----
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPPH------ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQ---PSSS---- 446 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~---- 446 (510)
++..++..|...|++++|..++++.... .| ...++..++..|...|++++|...+++++... +.++
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6678899999999999999988765321 23 34478888899999999999999999988543 3322
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 447 GAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
..+..++..+...|++++|.+.+.....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2366777888889999999999887763
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.2e-06 Score=78.54 Aligned_cols=153 Identities=7% Similarity=-0.073 Sum_probs=82.9
Q ss_pred hhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 046354 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLS 351 (510)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 351 (510)
...+..+...+ .+.|++++|...|++....+.... .+...|+..++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~-----~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSL-----FKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHT-----CSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 44566667777 899999999999988664221111 1222333444433221 136778888
Q ss_pred hcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc-HHHHHHHHHH-HHhhCCHH
Q 046354 352 DCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD-HVVLGALLGA-CRLHGDVR 429 (510)
Q Consensus 352 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~~~~~ 429 (510)
++.+.|++++|...+++..+. .+.+...+..+..+|...|++++|...|++..+..|+ ...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999874 2346788889999999999999999999999988774 4455555544 33457788
Q ss_pred HHHHHHHHHHhcCCCCc
Q 046354 430 MADYIGERLIELQPSSS 446 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~ 446 (510)
.+...|+++++..|.++
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 89999999998888765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-06 Score=81.40 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=97.5
Q ss_pred cCcCCcHHHHHHHHHHHHHhhC--CCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCC--------CCCc-HHHHHH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYG--FKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPP--------HERD-HVVLGA 417 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~~~~ 417 (510)
+...|++++|..++++..+... +-| ...+++.|+.+|...|++++|..++++..+ ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4578999999998888776431 112 245778899999999999999988876643 2443 348899
Q ss_pred HHHHHHhhCCHHHHHHHHHHHH-----hcCCCCchh---HHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 418 LLGACRLHGDVRMADYIGERLI-----ELQPSSSGA---YVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|...|...|++++|+.++++++ -+.|++|.+ ...+..++.+.|++++|...+.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 467888777 5577788999999999999999998
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=76.33 Aligned_cols=188 Identities=10% Similarity=-0.038 Sum_probs=133.3
Q ss_pred HHHHHhcCChhhHHHHHHhccccCCCh------------------hHHHHHHHHHHhcCChhhHHHHHHhhcc-----CC
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQRNI------------------VAESAMIDGYVKAGRVDEARKVFDEIYE-----GN 88 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p~~------------------~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~ 88 (510)
.+.+.+.|++++|++.|..+.+..|+. ..+..|...|...|++++|.+.+....+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 456778999999999999987764321 2467788999999999999999988743 11
Q ss_pred h----hhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHH
Q 046354 89 V----YSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLARE 164 (510)
Q Consensus 89 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~ 164 (510)
. .+.+.+-..+...|+.+.|..+++..... ....++ ......++..++..+...|++++|..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF-------------AKREKR-VFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH-------------HHHSSC-CSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------HHHhCc-cHHHHHHHHHHHHHHHHccChHHHHH
Confidence 1 23344444555678899999988877653 000000 01123455667788888889998988
Q ss_pred HHhhCC----C-----CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----hhhHHHHHHHHHhcCChHHHH
Q 046354 165 YFVQMP----N-----KDIVAWNAMITAYVDAGNMAQASELFNLMPQ-----RN-----VWTWNAMIDRYARNGPEGAAM 225 (510)
Q Consensus 165 ~~~~~~----~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~~~~~~A~ 225 (510)
+++... . ....++..++..|...|++++|...+++... ++ ...+..+...+...|++++|.
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 887764 1 1235788889999999999999999887653 22 245667777788899999999
Q ss_pred HHHHHHHH
Q 046354 226 KLLNLMFQ 233 (510)
Q Consensus 226 ~~~~~m~~ 233 (510)
..|.+...
T Consensus 237 ~~~~~a~~ 244 (434)
T 4b4t_Q 237 SYFFESFE 244 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.9e-06 Score=59.34 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=64.5
Q ss_pred cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 379 AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
...+..+...+...|++++|...+++..+..| +...+..+...+...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44566677778888888888888887765555 56677788888888888888888888888888888888888888877
Q ss_pred HcC
Q 046354 458 ARG 460 (510)
Q Consensus 458 ~~g 460 (510)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=58.83 Aligned_cols=63 Identities=19% Similarity=0.104 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+...+..+...|...|++++|+..|+++++.+|+++..|..++.+|...|++++|+..+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566788888888889999999999999999999988889999999999999999999888776
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.1e-05 Score=67.20 Aligned_cols=178 Identities=11% Similarity=-0.043 Sum_probs=121.2
Q ss_pred hhhHHHHhcccCC---CChhhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCc-HHHHHHHH
Q 046354 293 VNSARLAFERLEA---KDVVSWTAMILAYSNHG--HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGL-VEKGRKTF 366 (510)
Q Consensus 293 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~ 366 (510)
++++..+++.+.. .+..+|+.-.-.+.+.| .+++++.+++.+.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4556666665554 45567777666666767 4788999999998864 5566677666666666676 58888888
Q ss_pred HHHHHhhCCCCCcchhHhHHhHHhhc--------------CChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh------
Q 046354 367 NLMSRAYGFKPRAEHYSCLADILRRA--------------GQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH------ 425 (510)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~------ 425 (510)
+.+.+. .+-|...|+.....+.+. +.++++++.+.+.....| |..+|+-+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 888875 244566666555555444 457888888888776677 666776555555444
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---HHcCCChHHHHHHHHHH
Q 046354 426 -----GDVRMADYIGERLIELQPSSSGAYVLSANVH---AARGEWDEFAQVRKKME 473 (510)
Q Consensus 426 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~ 473 (510)
+-++++++.++++++..|++.-.+..++... ...|..++...+++++.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4578999999999999999855444444332 23566777777887776
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-06 Score=67.81 Aligned_cols=117 Identities=13% Similarity=-0.104 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC-CCcchhHhHHhH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK-PRAEHYSCLADI 388 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~ 388 (510)
.+......+...|++++|+..|++.++. .|+...- . +. ... .+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~--------~------a~----------~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPE--------E------AF----------DHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTT--------S------CC----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcch--------h------hh----------hhccchHHHHHHHHHH
Confidence 3555566666777777777777777763 3331100 0 00 000 012266777777
Q ss_pred HhhcCChHHHHHHHhhCCCC-------CCc-HHHH----HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPH-------ERD-HVVL----GALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~-------~p~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
+.+.|++++|+..+++..+. .|+ ...| .....++...|++++|+..|++++++.|++......+
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 88888888887777776666 884 4588 8999999999999999999999999999886554433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-06 Score=69.02 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCCh----------HHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQV----------KEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
+.+++|.+.++...+. -+.+...|..+..++...|++ ++|+..|++..+..| +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4455555555555543 122444555455555554443 255555555444444 333455555554443
Q ss_pred C-----------CHHHHHHHHHHHHhcCCCC
Q 046354 426 G-----------DVRMADYIGERLIELQPSS 445 (510)
Q Consensus 426 ~-----------~~~~A~~~~~~~~~~~p~~ 445 (510)
| ++++|+..|+++++++|++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 2 4555555555555555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.9e-05 Score=74.02 Aligned_cols=171 Identities=6% Similarity=-0.112 Sum_probs=137.5
Q ss_pred cChhhHHHHhcccCC---CChhhHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCC
Q 046354 291 LDVNSARLAFERLEA---KDVVSWTAMILAYSNHGH----------GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAG 357 (510)
Q Consensus 291 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 357 (510)
...++|.+.++++.. .+..+|+.--..+...|+ +++++..++.+.+.. +-+...|..-...+.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345677888888776 344577776666666666 899999999999863 456668887777777888
Q ss_pred --cHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC-ChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh--------
Q 046354 358 --LVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG-QVKEAMRVVSKMPPHER-DHVVLGALLGACRLH-------- 425 (510)
Q Consensus 358 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~-------- 425 (510)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++.+.++++.+..| +..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999985 2336777777777778888 89999999999998877 777888887776653
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChH
Q 046354 426 ------GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464 (510)
Q Consensus 426 ------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (510)
+.++++.+.+++++..+|++..+|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.06 E-value=7.7e-06 Score=75.83 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=79.9
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCC----------------CCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPP----------------HER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
+..+...+.+.|++++|.+.|++..+ ..| +..+|..+..+|.+.|++++|+..++++++++|+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 45566777778888888877777664 334 4568889999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 445 SSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++.++..++.+|...|++++|+..+++..+
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999998774
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=8.4e-06 Score=65.36 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCc----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC----c
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTK-PDE----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR----A 379 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 379 (510)
.++..+...|...|++++|...+++..+.... ++. .++..+...+...|++++|...+++..+...-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35677788888899999999999887753111 111 36677778888899999999999887764211122 4
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCC---C--C--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPH---E--R--DHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
..+..+...+...|++++|.+.+++..+. . + ...++..+...+...|++++|...++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 46677888899999999999988876532 1 1 234677788889999999999999999886543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.8e-05 Score=66.92 Aligned_cols=231 Identities=7% Similarity=-0.057 Sum_probs=148.6
Q ss_pred HHhcCCHH-HHHHHHhhCCC--C-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 046354 184 YVDAGNMA-QASELFNLMPQ--R-NVWTWNAMIDRYARNGP----------EGAAMKLLNLMFQSRFMPNETTCTSILTS 249 (510)
Q Consensus 184 ~~~~g~~~-~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 249 (510)
..+.|.++ +|+.+++.+.. | +..+|+.--..+...+. +++++.+++.+....
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-------------- 104 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------------- 104 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--------------
Confidence 34556554 68888887766 3 23445544333333332 456666666665422
Q ss_pred hhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccccc--ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCC-
Q 046354 250 CEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQL--DVNSARLAFERLEA---KDVVSWTAMILAYSNHGH- 323 (510)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~- 323 (510)
+.+..+|+.-...+ ...+ .++++..+++++.+ .|..+|+--.-.+...|.
T Consensus 105 -------------------PKny~aW~hR~wlL-----~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~ 160 (331)
T 3dss_A 105 -------------------PKSYGTWHHRCWLL-----SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA 160 (331)
T ss_dssp -------------------TTCHHHHHHHHHHH-----HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred -------------------CCCHHHHHHHHHHH-----hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Confidence 22333333333333 3444 47888888888776 566778877777778888
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcC--------------CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHA--------------GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
++++++.++.+++.. +-|...|+.....+... +.++++++++...... .+-|...|+.+-..+
T Consensus 161 ~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 161 PAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 589999999999864 44556666554443322 4578899999988874 344666666554444
Q ss_pred hhc-----------CChHHHHHHHhhCCCCCCcHHHHHHHHHHH-----HhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 390 RRA-----------GQVKEAMRVVSKMPPHERDHVVLGALLGAC-----RLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 390 ~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
.+. +.++++++.++++.+..|+. .|..+..+. ...|..++....+.++++++|-....|..+.
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 444 45788999999988778865 343322222 2457888999999999999999877777776
Q ss_pred HHH
Q 046354 454 NVH 456 (510)
Q Consensus 454 ~~~ 456 (510)
..+
T Consensus 317 ~~~ 319 (331)
T 3dss_A 317 SKF 319 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.05 E-value=7.9e-06 Score=78.32 Aligned_cols=115 Identities=10% Similarity=0.051 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCc----------------HHHHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMRVVSKMPPHERD----------------HVVLGALL 419 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------------~~~~~~l~ 419 (510)
+++++|...|+...+. .| ....+..+...+.+.|++++|...|++..+..|+ ..+|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 3444555444443322 12 3445677788888899999999999888765553 47889999
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=9e-06 Score=63.70 Aligned_cols=87 Identities=13% Similarity=-0.027 Sum_probs=74.3
Q ss_pred HHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH----------HHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV----------RMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
-..+.+.+++|.+.++...+..| +...|..+..++...+++ ++|+..|+++++++|+...+|..++.+|
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34567889999999998887777 777888888888877664 5999999999999999999999999999
Q ss_pred HHcC-----------CChHHHHHHHHHHH
Q 046354 457 AARG-----------EWDEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g-----------~~~~A~~~~~~~~~ 474 (510)
...| ++++|++.|++...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 8875 89999999997763
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.89 E-value=1.2e-05 Score=73.74 Aligned_cols=215 Identities=12% Similarity=0.179 Sum_probs=149.9
Q ss_pred CCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhc
Q 046354 6 CTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 85 (510)
+.|++.+|++.|-+ -.|+..|..+|.+..+.|.+++-+..+.-.++...++.+=+.|+-+|++.++..+-.+++.
T Consensus 66 ~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~--- 140 (624)
T 3lvg_A 66 QKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN--- 140 (624)
T ss_dssp TSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS---
T ss_pred ccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc---
Confidence 34455555444322 3566778889999999999999999988888776666777789999999888776443322
Q ss_pred cCChhhHHHHHHHHHcCCChHHHHHHHHhcccc----------------------CCChhhHHHHHHHHHhcCCcchhhH
Q 046354 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK----------------------LKNVVSWTTVVLGCAHNGLIAKLEV 143 (510)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------~~~~~~~~~ll~~~~~~~~~~~a~~ 143 (510)
.||+.-...+..-|...|.++.|.-+|..+... ..++.||-.+-.+|...+.+.-|..
T Consensus 141 ~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 141 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHH
Confidence 255555555555555566666555555444321 3567889999999999998888844
Q ss_pred HHHHH---------HHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------
Q 046354 144 ISWTT---------MCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ--------- 202 (510)
Q Consensus 144 ~~~~~---------l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------- 202 (510)
-..+. ++..|...|-+++.+.+++... .....+|+-|.-.|++- +.++..+.++....
T Consensus 221 cGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvir 299 (624)
T 3lvg_A 221 CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLR 299 (624)
T ss_dssp HHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHH
T ss_pred hcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHH
Confidence 44443 3456778888998888888877 45667788887777765 56666666655443
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHH
Q 046354 203 --RNVWTWNAMIDRYARNGPEGAAMK 226 (510)
Q Consensus 203 --~~~~~~~~li~~~~~~~~~~~A~~ 226 (510)
.....|..++-.|.+..+++.|..
T Consensus 300 acE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 300 AAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 245679999999999999987753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-05 Score=59.36 Aligned_cols=83 Identities=13% Similarity=-0.060 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 361 KGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
.|...+++..+. .+.+...+..+...|.+.|++++|...+++..+..| +...|..+...+...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677777652 234667778888888899999999999888876666 56688888889999999999999999998
Q ss_pred hcCCCC
Q 046354 440 ELQPSS 445 (510)
Q Consensus 440 ~~~p~~ 445 (510)
+..|..
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00012 Score=56.92 Aligned_cols=108 Identities=10% Similarity=-0.058 Sum_probs=57.9
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHH
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMAD 432 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~ 432 (510)
+++++|.++|++..+. | ++... |...|...+.+++|.+.|++..+ ..+...+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~-g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~-~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N---EMFGC--LSLVSNSQINKQKLFQYLSKACE-LNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T---CTTHH--HHHHTCTTSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C---CHhhh--HHHHHHcCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555543 3 11111 44444444555555555555442 2344455555555555 55666666
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHH----cCCChHHHHHHHHHH
Q 046354 433 YIGERLIELQPSSSGAYVLSANVHAA----RGEWDEFAQVRKKME 473 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 473 (510)
..|+++.+. .++..+..|+.+|.. .++.++|.+++++..
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 666666544 445556666666666 566666666666555
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.3e-05 Score=55.08 Aligned_cols=65 Identities=20% Similarity=0.083 Sum_probs=60.0
Q ss_pred CcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 410 RDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 410 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++...+..+...+...|++++|...|+++++..|+++..+..++.+|...|++++|++.+++..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35667888899999999999999999999999999999999999999999999999999998773
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00017 Score=51.35 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHHHhhCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 410 RDHVVLGALLGACRLHGD---VRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 410 p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
++...+..+..++...++ .++|...++++++.+|+++.+...++..+.+.|++++|+.+|+++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466777777777755444 68999999999999999999999999999999999999999998873
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00021 Score=70.16 Aligned_cols=150 Identities=9% Similarity=-0.005 Sum_probs=119.4
Q ss_pred hcCC-hhhHHHHHHHHHHcCCCCCc-hhHHHHHHhcCcCCc----------HHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 320 NHGH-GFQVFRLFARMLKSGTKPDE-ITFVGVLSDCSHAGL----------VEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 320 ~~g~-~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
+.|+ .++|++.++++... .|+. ..|+.--..+...|+ ++++++.++.+.+. .+-+..+|+.-..
T Consensus 40 ~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3444 56789999999985 4554 456555555555555 89999999999975 3446777777777
Q ss_pred HHhhcC--ChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc----
Q 046354 388 ILRRAG--QVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG-DVRMADYIGERLIELQPSSSGAYVLSANVHAAR---- 459 (510)
Q Consensus 388 ~~~~~g--~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 459 (510)
++.+.| +++++.+.++++.+..| +..+|+.-...+.+.| .++++.+.++++++.+|.+.++|...+.++...
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 788888 67999999999987777 7889999888888888 899999999999999999999999999998875
Q ss_pred ----------CCChHHHHHHHHHH
Q 046354 460 ----------GEWDEFAQVRKKME 473 (510)
Q Consensus 460 ----------g~~~~A~~~~~~~~ 473 (510)
+.+++|++++++..
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHH
Confidence 44577777777555
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=51.44 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+...+..+...+...|++++|...++++++..|+++..+..++.++...|++++|+..+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4567888888999999999999999999999999999999999999999999999999998773
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.66 E-value=3.5e-05 Score=56.13 Aligned_cols=68 Identities=10% Similarity=-0.099 Sum_probs=56.1
Q ss_pred CCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 046354 377 PRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPS 444 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 444 (510)
.++..+..+..+|.+.|++++|+..|++..+..| +...|..+..+|...|++++|...|++++++.|.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3566777888888899999999999988876666 5668888888899999999999999998877654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00022 Score=51.58 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=62.0
Q ss_pred HHhHHhhcCChHHHHHHHhhCCCCCC-cHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC
Q 046354 385 LADILRRAGQVKEAMRVVSKMPPHER-DHV-VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462 (510)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (510)
.+..+.+.|++++|...+++..+..| +.. .+..+..++...|++++|...|+++++.+|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45677888999999999998876667 556 78888889999999999999999999999998877632 344
Q ss_pred hHHHHHHH
Q 046354 463 DEFAQVRK 470 (510)
Q Consensus 463 ~~A~~~~~ 470 (510)
.++...++
T Consensus 78 ~~a~~~~~ 85 (99)
T 2kc7_A 78 MDILNFYN 85 (99)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 45555554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00011 Score=70.32 Aligned_cols=88 Identities=10% Similarity=0.003 Sum_probs=72.4
Q ss_pred hHHhhcCChHHHHHHHhhCCC--------CCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHH-----hcCCCCchh---H
Q 046354 387 DILRRAGQVKEAMRVVSKMPP--------HERD-HVVLGALLGACRLHGDVRMADYIGERLI-----ELQPSSSGA---Y 449 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~---~ 449 (510)
..+..+|++++|+.++++..+ ..|+ ..+++.|...|...|++++|+.++++++ .+.|++|.+ +
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 345678999999988876542 1343 3488999999999999999999999998 456777766 8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 450 VLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
..|+.+|..+|++++|+.++++...
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999998873
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=68.75 Aligned_cols=84 Identities=12% Similarity=0.043 Sum_probs=68.1
Q ss_pred hcCChHHHHHHHhhCCC-----C---CCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHH-----hcCCCCchh---HHHHH
Q 046354 391 RAGQVKEAMRVVSKMPP-----H---ERD-HVVLGALLGACRLHGDVRMADYIGERLI-----ELQPSSSGA---YVLSA 453 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~---~~~l~ 453 (510)
..|++++|+.++++..+ . .|+ ..+++.|..+|...|++++|+.++++++ .+.|++|.+ +..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35778888887765532 1 333 3488999999999999999999999998 356777766 88899
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 046354 454 NVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.+|..+|++++|+.++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998873
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00035 Score=65.77 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=71.5
Q ss_pred HhHHhhcCChHHHHHHHhhCCCC-----CCc----HHHHHHHHHHHHhhCCHHHHHHHHHHHH-----hcCCCCchh---
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPH-----ERD----HVVLGALLGACRLHGDVRMADYIGERLI-----ELQPSSSGA--- 448 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~-----~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~--- 448 (510)
+..+.+.|++++|+.++++..+. .|+ ..+++.+...|...|++++|+.++++++ -+.|++|.+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456788999999888766432 332 3478889999999999999999999998 345777666
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 449 YVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
+..|+.+|..+|++++|+.++++...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998873
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00044 Score=49.86 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=53.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 418 LLGACRLHGDVRMADYIGERLIELQPSSSG-AYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 418 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
....+...|++++|...++++++..|+++. .+..++.+|...|++++|++.|++..+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 456678899999999999999999999999 999999999999999999999998874333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0015 Score=50.56 Aligned_cols=111 Identities=10% Similarity=-0.090 Sum_probs=90.9
Q ss_pred CChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCChHH
Q 046354 322 GHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQVKE 397 (510)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 397 (510)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++..+. .++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 34433 667778888889999999999874 466777888888887 889999
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcC
Q 046354 398 AMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMADYIGERLIELQ 442 (510)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 442 (510)
|.+.|++..+. -+...+..|...|.. .+++++|...|+++.+..
T Consensus 80 A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999988733 567778888888888 799999999999998764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0042 Score=56.00 Aligned_cols=73 Identities=15% Similarity=0.001 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhccccceeE
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKKVASFSQ 484 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 484 (510)
+..++..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|...+++..+--|..|.+.|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~ 348 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYW 348 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHH
Confidence 5555555555555556666666666666666643 344556666666666666666666655533333344433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00057 Score=64.24 Aligned_cols=95 Identities=7% Similarity=-0.109 Sum_probs=73.8
Q ss_pred cCCcHHHHHHHHHHHHHhhC--CCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCC--------CCCc-HHHHHHHH
Q 046354 355 HAGLVEKGRKTFNLMSRAYG--FKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPP--------HERD-HVVLGALL 419 (510)
Q Consensus 355 ~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~~~~l~ 419 (510)
..|++++|..++++..+... +-| ...+++.|..+|...|++++|+.++++..+ ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46788999999888776421 222 246788899999999999999998887653 2454 34789999
Q ss_pred HHHHhhCCHHHHHHHHHHHH-----hcCCCCchhH
Q 046354 420 GACRLHGDVRMADYIGERLI-----ELQPSSSGAY 449 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~~ 449 (510)
..|...|++++|+.++++++ -+.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999998 4568876553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0025 Score=57.48 Aligned_cols=139 Identities=14% Similarity=0.021 Sum_probs=98.6
Q ss_pred CChhhHHHHHHHHH--hcCC---hhhHHHHHHHHHHcCCCCCc-hhHHHHHHhcCc----CCc-HHHHH---HHHHHHHH
Q 046354 306 KDVVSWTAMILAYS--NHGH---GFQVFRLFARMLKSGTKPDE-ITFVGVLSDCSH----AGL-VEKGR---KTFNLMSR 371 (510)
Q Consensus 306 ~~~~~~~~l~~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~----~g~-~~~a~---~~~~~~~~ 371 (510)
.+...|...+.+.. ..++ ..+|..+|++..+. .|+. ..+..+..++.. .+. ..... ..++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46778888887643 3333 57899999999985 5664 455555555431 111 11111 12222111
Q ss_pred hhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 372 AYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 372 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
....+.++.++..+...+...|++++|...++++....|+...|..+...+.-.|++++|...|++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 112355778888888778888999999999999988889888888888889999999999999999999999875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00058 Score=52.84 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=69.7
Q ss_pred CCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcC---ChHHHHHHHhhCCCCC-C--cHHHHHHHHHHHHhhCCHH
Q 046354 356 AGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAG---QVKEAMRVVSKMPPHE-R--DHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 356 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~~~~~ 429 (510)
......+.+-|.+..+. + +++..+...+..++++.+ ++++++.+++...+.. | ....+-.|.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 34455666666666553 3 467777777888888887 5668888888776555 6 3557777888899999999
Q ss_pred HHHHHHHHHHhcCCCCchhH
Q 046354 430 MADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~ 449 (510)
+|.+.++.+++.+|++..+.
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999886543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.002 Score=45.74 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=57.1
Q ss_pred CCCcchhHhHHhHHhhcCC---hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 376 KPRAEHYSCLADILRRAGQ---VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+.++..+..+..++...++ .++|..++++..+..| +......+...+...|++++|...++++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4567777778887765544 7899999999887777 56677888888999999999999999999998884
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0029 Score=46.10 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=53.2
Q ss_pred chhHhHHhHHhhcCChHHHHHHHhhCCCC--------CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 380 EHYSCLADILRRAGQVKEAMRVVSKMPPH--------ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
.-+..+...+.+.|+++.|...++...+. .+...++..|..++.+.|+++.|...+++++++.|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445666666666666666666554321 2356688889999999999999999999999999999776544
Q ss_pred H
Q 046354 452 S 452 (510)
Q Consensus 452 l 452 (510)
+
T Consensus 86 ~ 86 (104)
T 2v5f_A 86 L 86 (104)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.032 Score=57.68 Aligned_cols=97 Identities=12% Similarity=0.177 Sum_probs=54.2
Q ss_pred CCChHHHHH-HHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhc
Q 046354 7 TGKVKEATK-LFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85 (510)
Q Consensus 7 ~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 85 (510)
.+++++|.+ ++..++ +......+++.+.+.|.++.|.++.+. |. .-.......|+++.|.++.+.+
T Consensus 612 ~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~-----~~f~~~l~~~~~~~A~~~~~~~- 678 (814)
T 3mkq_A 612 RGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----QD-----QKFELALKVGQLTLARDLLTDE- 678 (814)
T ss_dssp TTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH-----HHHHHHHHHTCHHHHHHHHTTC-
T ss_pred hCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----cc-----hheehhhhcCCHHHHHHHHHhh-
Confidence 355555555 443222 112225555556666666666655421 11 1133345567777777766554
Q ss_pred cCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 046354 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117 (510)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 117 (510)
.+...|..|...+.+.|+++.|.+.|.++.+
T Consensus 679 -~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 679 -SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred -CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 2445677777777777777777777776654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0012 Score=62.07 Aligned_cols=101 Identities=10% Similarity=-0.086 Sum_probs=76.2
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhC--CCC----CcchhHhHHhHHhhcCChHHHHHHHhhCCC--------CCCc-HHH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYG--FKP----RAEHYSCLADILRRAGQVKEAMRVVSKMPP--------HERD-HVV 414 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~ 414 (510)
+..+...|++++|..++++..+... +.| ...+++.|+.+|...|++++|+.++++..+ ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567889999999888875321 122 245678899999999999999988876643 2443 347
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHH-----hcCCCCchhHH
Q 046354 415 LGALLGACRLHGDVRMADYIGERLI-----ELQPSSSGAYV 450 (510)
Q Consensus 415 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~p~~~~~~~ 450 (510)
++.|...|...|++++|+.++++++ -+.|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 8999999999999999999999998 46788876643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.002 Score=55.60 Aligned_cols=79 Identities=13% Similarity=0.046 Sum_probs=54.7
Q ss_pred hHHHHHHHhhCCCCCCc---HHHHHHHHHHHHh-----hCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHH-cCCChH
Q 046354 395 VKEAMRVVSKMPPHERD---HVVLGALLGACRL-----HGDVRMADYIGERLIELQPSS-SGAYVLSANVHAA-RGEWDE 464 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~ 464 (510)
...|...+++..+..|+ ...|..+...|.. .|+.++|.+.|+++++++|+. ..++..++..++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555666666655665 4466666666666 377777777777777777764 7777777777766 377777
Q ss_pred HHHHHHHHH
Q 046354 465 FAQVRKKME 473 (510)
Q Consensus 465 A~~~~~~~~ 473 (510)
|.+++++..
T Consensus 259 a~~~L~kAL 267 (301)
T 3u64_A 259 FDEALDRAL 267 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777776
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.062 Score=55.46 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=22.9
Q ss_pred hcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046354 155 RNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMP 201 (510)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 201 (510)
..|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 664 ~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345555555554443 233455555555555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0015 Score=60.27 Aligned_cols=331 Identities=12% Similarity=0.055 Sum_probs=178.5
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcC
Q 046354 57 NIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNG 136 (510)
Q Consensus 57 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~ 136 (510)
.+..|+.|..+..+.+++.+|.+-|- ...|...|..+|....+.|.+++-...+...++...+...=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 34566667777777676666655332 2245556777777777777777777777666665444444556666666665
Q ss_pred CcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------
Q 046354 137 LIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ------------- 202 (510)
Q Consensus 137 ~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 202 (510)
+..+. ++.. .||..-...+.+-|...|.++.|.-+|..+..
T Consensus 131 rL~el-------------------------Eefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 131 RLAEL-------------------------EEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp SSSTT-------------------------TSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred cHHHH-------------------------HHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 55432 1111 34444444555555555555555555544321
Q ss_pred -----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcc
Q 046354 203 -----------RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQE 271 (510)
Q Consensus 203 -----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 271 (510)
.++.||-.+-.+|...+.+.-|.-.--.+. ..
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI-------------------------------------vh 228 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-------------------------------------VH 228 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-------------------------------------CC
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc-------------------------------------cc
Confidence 466778888888888777765543322221 11
Q ss_pred hhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHH
Q 046354 272 TSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVG 348 (510)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 348 (510)
+.-...++..| -..|.+++-..+++.... .....|+-|.-.|++- ++++..+.++.... +.| .--
T Consensus 229 adeL~elv~~Y-----E~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipK 296 (624)
T 3lvg_A 229 ADELEELINYY-----QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPK 296 (624)
T ss_dssp SSCCSGGGSSS-----STTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTT
T ss_pred HHHHHHHHHHH-----HhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHH
Confidence 12233456666 888999988888887664 5667888888888775 56666665544322 222 224
Q ss_pred HHHhcCcCCcHHHHHHHHHHHHH------h-hCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 046354 349 VLSDCSHAGLVEKGRKTFNLMSR------A-YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGA 421 (510)
Q Consensus 349 li~~~~~~g~~~~a~~~~~~~~~------~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 421 (510)
+|++|.+...+.++.=++....+ . -..+|+..-...+-+...+..+.+---+.+.-..+..|.. .+-|+.+
T Consensus 297 viracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~l--L~DLL~v 374 (624)
T 3lvg_A 297 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLL--LNDLLMV 374 (624)
T ss_dssp THHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTT--SHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHH--HHHHHHh
Confidence 56677776666666554432211 0 0011112222233344445555443333333333223432 3445555
Q ss_pred HHhhCCHHHHHHHHHHHH----------hcCC-CCchhHHHHHHHHHHcCCChHH
Q 046354 422 CRLHGDVRMADYIGERLI----------ELQP-SSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 422 ~~~~~~~~~A~~~~~~~~----------~~~p-~~~~~~~~l~~~~~~~g~~~~A 465 (510)
+...=|..++++++++.- ...+ ++...-..+-.+|...++++.-
T Consensus 375 L~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L 429 (624)
T 3lvg_A 375 LSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL 429 (624)
T ss_dssp HCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH
Confidence 555555566666666532 1112 3333355566667777766543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.17 Score=40.23 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhc
Q 046354 6 CTGKVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIY 85 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 85 (510)
+.|+++.|.++.+.+ .+...|..|.+...+.|+++-|.++|.+... +..+.-.|.-.|+.+.-.++-+...
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467888888877766 4567788888888888888888888888877 5666666666777766555544432
Q ss_pred cCChhhHHHHHHHHHcCCChHHHHHHHHhccc
Q 046354 86 EGNVYSWTSLISGYFKARQVDEGRRLFDRMPL 117 (510)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 117 (510)
..+ -++.....+...|+++++.++|.+..+
T Consensus 88 ~~g--~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 88 TRE--DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HTT--CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HCc--cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 221 234444455567888888887766544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.041 Score=40.88 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH---HHHHHhhCCCCC-C--cHHHHHHHHHHHHhhCCHHHHH
Q 046354 359 VEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE---AMRVVSKMPPHE-R--DHVVLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~~~~~~A~ 432 (510)
...+.+-+...... | .|+..+-..+..++.+..+... ++.+++...... | .....-.|.-++.+.|++.+|.
T Consensus 17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555443 3 3666666667777777776555 777777776554 5 3445666777899999999999
Q ss_pred HHHHHHHhcCCCCchhHHH
Q 046354 433 YIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~ 451 (510)
+.++.+++.+|++..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999999766443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.15 Score=37.99 Aligned_cols=141 Identities=10% Similarity=0.034 Sum_probs=97.0
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..+.++.+-+ -.|. ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk----iFDi----------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS----YFDL----------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG----GSCG----------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh----hcCc----------HhhhcHHH
Confidence 34468888888888888764 2444555555444444444555555555533 2232 23566666
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH-Hhh
Q 046354 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRV 476 (510)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 476 (510)
....+-.+- .+...+...+.....+|.-++-.+++..++...|.+|.....++++|.+.|+..+|.+++.+.. +|+
T Consensus 80 Vi~C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 80 VVECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 666665554 4445566777888889999999999998766777778889999999999999999999999988 666
Q ss_pred cc
Q 046354 477 KK 478 (510)
Q Consensus 477 ~~ 478 (510)
+.
T Consensus 157 kE 158 (172)
T 1wy6_A 157 KE 158 (172)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.006 Score=47.17 Aligned_cols=80 Identities=8% Similarity=-0.068 Sum_probs=63.6
Q ss_pred hHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHHcCCChHHHHH
Q 046354 395 VKEAMRVVSKMPPH-ERDHVVLGALLGACRLHG---DVRMADYIGERLIELQ-P-SSSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 395 ~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
+..+.+.|.+..+. .++..+...+..++.+.+ +.++++.+++...+.+ | ++...+..++-+|.+.|++++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34445555443222 468888888999999987 7779999999999888 6 5577889999999999999999999
Q ss_pred HHHHHH
Q 046354 469 RKKMER 474 (510)
Q Consensus 469 ~~~~~~ 474 (510)
++.+.+
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 997763
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.99 Score=44.32 Aligned_cols=115 Identities=8% Similarity=-0.065 Sum_probs=74.4
Q ss_pred CChhhHHHHHHHHHHcCCCCCch----hHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 322 GHGFQVFRLFARMLKSGTKPDEI----TFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
.+++.|...|......+ ..+.. ....+.......+...++...+...... .++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 47899999998887643 22322 2233444555666345566666665432 3444445555566668899999
Q ss_pred HHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 046354 398 AMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIE 440 (510)
Q Consensus 398 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 440 (510)
|...|+.+....++ ....-=+..++...|+.++|..+|+.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999854332 33233345567778999999999999864
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.022 Score=41.23 Aligned_cols=65 Identities=11% Similarity=-0.038 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQ-------PSSSGAYVLSANVHAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 475 (510)
+...+..+...+...|++..|...|+.+++.. +..+..+..|+.+|.+.|+++.|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999999643 234556999999999999999999999987643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.022 Score=49.24 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhCCCCC---cchhHhHHhHHhh-----cCChHHHHHHHhhCCCCCCc--HHHHHHHHHHHHhh-CC
Q 046354 359 VEKGRKTFNLMSRAYGFKPR---AEHYSCLADILRR-----AGQVKEAMRVVSKMPPHERD--HVVLGALLGACRLH-GD 427 (510)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~-~~ 427 (510)
...|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+..|+ ..++......++.. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34555555555543 454 4456666666666 47888888888887766773 56666677777664 88
Q ss_pred HHHHHHHHHHHHhcCCC
Q 046354 428 VRMADYIGERLIELQPS 444 (510)
Q Consensus 428 ~~~A~~~~~~~~~~~p~ 444 (510)
.++|.+.+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 88888888888877666
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.83 Score=36.26 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=76.4
Q ss_pred HHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHH
Q 046354 65 IDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVI 144 (510)
Q Consensus 65 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 144 (510)
.......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~-------------- 68 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSF-------------- 68 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHH--------------
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHH--------------
Confidence 34556778888888887766 4566788888888888888888888888765 222222
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHH
Q 046354 145 SWTTMCTGLERNAMTKLAREYFVQMP-NKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGA 223 (510)
Q Consensus 145 ~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 223 (510)
.|...|+.+....+-+... .. -++....++.-.|+++++.++|.+..+.. ..+......|..+.
T Consensus 69 -------Ly~~tg~~e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~ 133 (177)
T 3mkq_B 69 -------LYLVTGDVNKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAA 133 (177)
T ss_dssp -------HHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHH
T ss_pred -------HHHHhCCHHHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHH
Confidence 2233333333332222111 11 13334445667788888888887766511 11122223566777
Q ss_pred HHHHHHHH
Q 046354 224 AMKLLNLM 231 (510)
Q Consensus 224 A~~~~~~m 231 (510)
|.++.+++
T Consensus 134 a~~~~~~~ 141 (177)
T 3mkq_B 134 ASAFLEQA 141 (177)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77777665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.23 Score=37.93 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=35.6
Q ss_pred CChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 393 GQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 393 g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
++.++|.++|+.+.+. +-=...|.....--.++|++..|.+++.+++++.|.+...+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 4555555555554321 111445555555566777777777777777777777655444433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.94 E-value=1.7 Score=40.95 Aligned_cols=185 Identities=9% Similarity=0.044 Sum_probs=114.5
Q ss_pred cCChhhHHHHHHhcccc-------CCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhh---HHHHHHHHHcCCChHH
Q 046354 38 NHDLPKAEALFRAMPES-------QRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS---WTSLISGYFKARQVDE 107 (510)
Q Consensus 38 ~~~~~~A~~~~~~~~~~-------~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 107 (510)
.|++++|++-+-.+.+. .........++..|...|+++...+.+..+.+.-... -..+++ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~---------~ 99 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQ---------K 99 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHH---------H
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHH---------H
Confidence 36777887776555433 1245667788899999999998877776664322111 111221 1
Q ss_pred HHHHHHhccccCCChhhHHHHHHHHHh--cCCc--chhhHHHHHHHHHHHHhcCchHHHHHHHhhCC----CC-C----h
Q 046354 108 GRRLFDRMPLKLKNVVSWTTVVLGCAH--NGLI--AKLEVISWTTMCTGLERNAMTKLAREYFVQMP----NK-D----I 174 (510)
Q Consensus 108 A~~~~~~m~~~~~~~~~~~~ll~~~~~--~~~~--~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~-~----~ 174 (510)
+...+..... ++..+...++..... .|.+ +.-.......++..+...|++.+|.+++..+. .. + +
T Consensus 100 ~~~~l~~~~~--~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kv 177 (445)
T 4b4t_P 100 VMEYLKSSKS--LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKI 177 (445)
T ss_dssp HHHHHHHHCT--THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHhcCCc--hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 1222222221 233333333332211 1111 11133455678889999999999999998875 11 1 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ--------RN--VWTWNAMIDRYARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 233 (510)
..+..-++.|...+++.+|..++.++.. |+ ...+...+..+...+++.+|.+.|.+...
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4667778899999999999988887642 11 24467778888889999999988888755
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.072 Score=40.61 Aligned_cols=48 Identities=10% Similarity=-0.119 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+|.++|.++|+.+++....-+..|...+..-.++|+...|++++.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 455555555555544433333334444444555555555555554443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=3.8 Score=40.21 Aligned_cols=378 Identities=10% Similarity=0.002 Sum_probs=193.9
Q ss_pred CCCChHHHHHHHhhcCCCChhhH---HHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 046354 6 CTGKVKEATKLFDEMSQPDPVSC---ASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
+.|++..+..+...+..-....| ..+...+ ....+.+...++++-.........-+..+..+.+.+++.....++.
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~ 96 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP 96 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC
T ss_pred HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc
Confidence 45777777777766643222333 2222211 2224555665555554432222333456677778888888888766
Q ss_pred hhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHH
Q 046354 83 EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161 (510)
Q Consensus 83 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 161 (510)
. ...+...-.....+....|+..+|......+-.. ......+..++..+...|.....+ .-.-+......|+...
T Consensus 97 ~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~---~~~R~~~al~~~~~~~ 172 (618)
T 1qsa_A 97 E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLA---YLERIRLAMKAGNTGL 172 (618)
T ss_dssp S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHH---HHHHHHHHHHTTCHHH
T ss_pred C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHCCCHHH
Confidence 6 3345555556777788889887777766665544 445667888888888777665422 2222344445566666
Q ss_pred HHHHHhhCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 046354 162 AREYFVQMPNKDIV-AWNAMITAYVDAGNMAQASELFNLMPQRNVW---TWNAMIDRYARNGPEGAAMKLLNLMFQSRFM 237 (510)
Q Consensus 162 a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 237 (510)
|..+...+. ++.. ....++..+.. ...+........ ++.. .+...+.-+.+. +.+.|...+......+.
T Consensus 173 a~~l~~~l~-~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~- 245 (618)
T 1qsa_A 173 VTVLAGQMP-ADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQ- 245 (618)
T ss_dssp HHHHHHTCC-GGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccC-
Confidence 666555442 2221 12222222222 122222222211 1111 111112222222 45555555554432110
Q ss_pred CCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHH
Q 046354 238 PNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILA 317 (510)
Q Consensus 238 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 317 (510)
.+.... ...+..+...
T Consensus 246 ~~~~~~----------------------------------------------------------------~~~~~~ia~~ 261 (618)
T 1qsa_A 246 LNEDQI----------------------------------------------------------------QELRDIVAWR 261 (618)
T ss_dssp CCHHHH----------------------------------------------------------------HHHHHHHHHT
T ss_pred CCHHHH----------------------------------------------------------------HHHHHHHHHH
Confidence 000000 0112223333
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
+...+...++...+...... .++.......+....+.|+++.|...|+.+... ......-.-.+..++...|+.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~ 337 (618)
T 1qsa_A 262 LMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAE 337 (618)
T ss_dssp SCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHH
Confidence 34445355677777765543 344444444445455779999999999988653 11233334567778889999999
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCch-----hHHHHHHHHHHcCCChHHHHHHHHH
Q 046354 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSG-----AYVLSANVHAARGEWDEFAQVRKKM 472 (510)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~ 472 (510)
|..+|+.+. .+. +|-.++.+ .+.|..... . .....+.... .....+..+...|....|...+..+
T Consensus 338 a~~~~~~~a--~~~--~fYg~lAa-~~Lg~~~~~----~-~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~ 407 (618)
T 1qsa_A 338 AKEILHQLM--QQR--GFYPMVAA-QRIGEEYEL----K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (618)
T ss_dssp HHHHHHHHH--TSC--SHHHHHHH-HHTTCCCCC----C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCC--ChHHHHHH-HHcCCCCCC----C-CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHH
Confidence 999999987 332 33333322 222321000 0 0001111111 1234455678899999998887766
Q ss_pred H
Q 046354 473 E 473 (510)
Q Consensus 473 ~ 473 (510)
.
T Consensus 408 ~ 408 (618)
T 1qsa_A 408 V 408 (618)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=94.32 E-value=1.9 Score=35.57 Aligned_cols=185 Identities=6% Similarity=0.043 Sum_probs=111.5
Q ss_pred ChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCC
Q 046354 9 KVKEATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGN 88 (510)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 88 (510)
+.+....+.+.+..++...-...+..+.+.|..+..-.+.+.+.. ++...-...+.++.+.++.+....+.+.+..++
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~ 94 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDERAVEPLIKALKDED 94 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSS
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCC
Confidence 344444555555677877777788888888875544444444443 677777777788888887666666666666778
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhh
Q 046354 89 VYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ 168 (510)
Q Consensus 89 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~ 168 (510)
..+....+.++.+.|+.+....+.+-+.+ ++...-...+.++ .+.|..+....+.+.
T Consensus 95 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL---------------------~~~~~~~~~~~L~~~ 151 (211)
T 3ltm_A 95 GWVRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFAL---------------------GEIGDERAVEPLIKA 151 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHH---------------------HHHCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhC--CCHHHHHHHHHHH---------------------HHcCCHHHHHHHHHH
Confidence 88888888888887776544444444433 5544433333333 333443333333344
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCChhhHHHHHHHHHhcC
Q 046354 169 MPNKDIVAWNAMITAYVDAGNMAQASELFNLM-PQRNVWTWNAMIDRYARNG 219 (510)
Q Consensus 169 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~~~ 219 (510)
+..++..+-...+.++.+.|..+ +...+..+ ..++..+-...+.++.+.+
T Consensus 152 l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 152 LKDEDGWVRQSAADALGEIGGER-VRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCSHH-HHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HcCCCHHHHHHHHHHHHHhCchh-HHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 44677777777778888877743 44444333 3366666666666655544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.02 E-value=1.4 Score=32.95 Aligned_cols=136 Identities=16% Similarity=0.082 Sum_probs=88.3
Q ss_pred HhcCChhhHHHHHHhhcc-CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHH
Q 046354 69 VKAGRVDEARKVFDEIYE-GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147 (510)
Q Consensus 69 ~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 147 (510)
.-.|.+++..++..+... .+..-||.+|--..-.-+-+-..++++.+-+. -|.
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDi------------------------- 71 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL------------------------- 71 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG-------------------------
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh-cCc-------------------------
Confidence 345777777777777654 34445565555444444545555555555432 111
Q ss_pred HHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CC--CChhhHHHHHHHHHhcCChHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLM-PQ--RNVWTWNAMIDRYARNGPEGAA 224 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~li~~~~~~~~~~~A 224 (510)
...|+.......+-.+. .+.......++.....|+-|+-.+++..+ .. +++...-.+..+|.+.|+..+|
T Consensus 72 ------s~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 72 ------DKCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp ------GGCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HhhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhH
Confidence 22344444444444433 23344566678888999999999999884 32 6788888899999999999999
Q ss_pred HHHHHHHHHCCCC
Q 046354 225 MKLLNLMFQSRFM 237 (510)
Q Consensus 225 ~~~~~~m~~~g~~ 237 (510)
.+++.+.-+.|++
T Consensus 145 ~eLl~~AC~kG~k 157 (172)
T 1wy6_A 145 TTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhH
Confidence 9999999888864
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.24 Score=49.62 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=50.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 419 LGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 419 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
...|...|+++.|..+.+++....|..-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3446678999999999999999999999999999999999999999999998774
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=93.16 E-value=3.1 Score=34.22 Aligned_cols=185 Identities=9% Similarity=0.088 Sum_probs=117.2
Q ss_pred CChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 39 HDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 39 ~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
++.+....+.+.+. .++...-...+..+.+.+..+....+.+.+..++.......+.++.+.++.+....+.+.+..
T Consensus 16 ~~~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~- 92 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKD- 92 (211)
T ss_dssp CCGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-
T ss_pred cCHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC-
Confidence 33333444444444 377777777788888888866666666666677877878888888887775555445444444
Q ss_pred CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 046354 119 LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFN 198 (510)
Q Consensus 119 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 198 (510)
++...-...+. ++.+.++.+....+.+.+..++..+-...+.++.+.|+.+....+..
T Consensus 93 -~~~~vr~~a~~---------------------aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~ 150 (211)
T 3ltm_A 93 -EDGWVRQSAAV---------------------ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIK 150 (211)
T ss_dssp -SSHHHHHHHHH---------------------HHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred -CCHHHHHHHHH---------------------HHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55444333333 34444444444444444457888888888888888888665555666
Q ss_pred hCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhh
Q 046354 199 LMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEG 252 (510)
Q Consensus 199 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 252 (510)
.+..++..+-...+.++.+.+. .++...+..+.+. ++...-...+.++..
T Consensus 151 ~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 151 ALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 6666888888888888888876 4566666666653 455555555554443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.79 E-value=0.59 Score=35.35 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=52.6
Q ss_pred CCCcchhHhHHhHHhhcCCh---HHHHHHHhhCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh
Q 046354 376 KPRAEHYSCLADILRRAGQV---KEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA 448 (510)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 448 (510)
.|++.+--.+..++.+..+. .+++.+++......| .....-.|.-++.+.|++++|.+..+.+++.+|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45666666677777776654 356666666554445 34455667778999999999999999999999998654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=92.34 E-value=3.8 Score=33.28 Aligned_cols=93 Identities=9% Similarity=0.065 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhh
Q 046354 12 EATKLFDEMSQPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYS 91 (510)
Q Consensus 12 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 91 (510)
.-..+++.+..+|...-...+.++.+.+..+....+.+.+.. ++...-...+.++...++.+....+.+.+..++...
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~v 92 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWV 92 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHH
Confidence 334445555566666666666666666664444444444432 555555555566666666555444444445556555
Q ss_pred HHHHHHHHHcCCChH
Q 046354 92 WTSLISGYFKARQVD 106 (510)
Q Consensus 92 ~~~li~~~~~~g~~~ 106 (510)
....+.++.+.++.+
T Consensus 93 r~~a~~aL~~~~~~~ 107 (201)
T 3ltj_A 93 RQSAAVALGQIGDER 107 (201)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCcHH
Confidence 556666665555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.22 E-value=0.82 Score=34.08 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=52.0
Q ss_pred CCCcchhHhHHhHHhhcCCh---HHHHHHHhhCCCCCC--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 376 KPRAEHYSCLADILRRAGQV---KEAMRVVSKMPPHER--DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
.|++.+--.++.++.+..+. .+++.+++...+..| ....+-.|.-++.+.|++++|.+..+.+++.+|++..+-
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 35555555666666666654 356666666554455 344666777888999999999999999999999986553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.21 E-value=4.7 Score=43.27 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc
Q 046354 61 ESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK 118 (510)
Q Consensus 61 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 118 (510)
...++..+...+.++.+.++..... .+....-.+..++...|++++|.+.|++....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~ 871 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV 871 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 3456677778888888877655443 44444455677888999999999999987653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.46 Score=43.89 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=35.0
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
...++..+...|++++|...+..+....| +...|..++.++...|+..+|.+.|++..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555666666666666655554445 55566666666666666666666666654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.76 E-value=0.22 Score=37.00 Aligned_cols=80 Identities=5% Similarity=-0.151 Sum_probs=58.2
Q ss_pred hHHHHHHHhhCCC-CCCcHHHHHHHHHHHHhhCCHHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHHcCCChHHHHH
Q 046354 395 VKEAMRVVSKMPP-HERDHVVLGALLGACRLHGDVRM---ADYIGERLIELQ-P-SSSGAYVLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 395 ~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (510)
+..+.+-|.+... ..|+..+--.+.+++.+..+... ++.+++...+.+ | ........|+-++.+.|++++|+++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444443321 24677777888888888776655 999999888665 4 3445578889999999999999999
Q ss_pred HHHHHH
Q 046354 469 RKKMER 474 (510)
Q Consensus 469 ~~~~~~ 474 (510)
.+.+.+
T Consensus 97 ~~~lL~ 102 (126)
T 1nzn_A 97 VRGLLQ 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997763
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.56 Score=36.57 Aligned_cols=27 Identities=4% Similarity=-0.131 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 447 GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+.-..++.+|.+.|++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 345668899999999999999998654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.62 E-value=10 Score=35.51 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCc-----hhHHHHHHhcCcCCcHHHHHHHHHHHHHhh-CCCCC----cc
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDE-----ITFVGVLSDCSHAGLVEKGRKTFNLMSRAY-GFKPR----AE 380 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~ 380 (510)
...|...|...|++.+|..++..+...-...+. ..+...++.|...+++..|..++.++.... ...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999998643112222 245556778888999999999998875321 22222 23
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCC
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMP 406 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (510)
.+...+..+...+++.+|.+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677778888899999888776654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.29 E-value=9.4 Score=33.89 Aligned_cols=121 Identities=8% Similarity=-0.020 Sum_probs=69.5
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCcCCc--H------HHHHHHHHHHHHhhCC--CCCcchhHhHHhHHhhcCChHHHHHH
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSHAGL--V------EKGRKTFNLMSRAYGF--KPRAEHYSCLADILRRAGQVKEAMRV 401 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~~g~--~------~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (510)
+-..+.++++|......++..+..... + ..|+.+- .+. |- .-++.....+...|.+.|++.+|...
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS---~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWS---KKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHH---HHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH---hhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 444445566666555555554443322 1 1222222 222 42 33678888899999999999999988
Q ss_pred HhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHcCCChHHHHHHHHHH
Q 046354 402 VSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL-SANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 402 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
|--. ..+....+..++..+...+. |.....|.. .+--|.-.|+...|...++...
T Consensus 159 ~ilg--~~~s~~~~a~mL~ew~~~~~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 159 LVLG--TKESPEVLARMEYEWYKQDE---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTTS--CTTHHHHHHHHHHHHHHTSC---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhc--CCchHHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8422 24444566555554444332 222223332 2233677889999999888877
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.36 E-value=1.7 Score=33.84 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=13.5
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHH
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMS 370 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~ 370 (510)
+..+..++...|++..|...|+...
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444455555566666666555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.22 E-value=3.7 Score=43.99 Aligned_cols=111 Identities=8% Similarity=-0.008 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhcc---C-----------------
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYE---G----------------- 87 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~----------------- 87 (510)
...++..+...+..+-+.++...... ++..--.+..++...|++++|.+.|++... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 34566677778888877776665544 222223456778888899999888877621 0
Q ss_pred ------ChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCCh-----hhHHHHHHHHHhcCCcchh
Q 046354 88 ------NVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNV-----VSWTTVVLGCAHNGLIAKL 141 (510)
Q Consensus 88 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~-----~~~~~ll~~~~~~~~~~~a 141 (510)
-..-|..++..+-+.|.++.+.++-....+. .++. ..|..+...+...|+++.|
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0123677888888888888888777665544 2222 2477888888888998887
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.10 E-value=0.95 Score=33.74 Aligned_cols=66 Identities=9% Similarity=-0.132 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 408 HERDHVVLGALLGACRLHG---DVRMADYIGERLIELQPS-SSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 408 ~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
-.|+..+--.+.+++.+.. +..+++.+++...+.+|. ....+..|+-++.+.|++++|+++.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3677777777788877764 556799999999988774 35558888999999999999999999665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.89 E-value=0.89 Score=31.81 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
.=++.+-++.+....+-|++....+.+++|.+.+++..|.++++.++.+ ..+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 3355666667777777888888888888888888888888888888765 2333455666554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.74 E-value=0.98 Score=38.47 Aligned_cols=117 Identities=9% Similarity=0.063 Sum_probs=62.3
Q ss_pred cCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH----HHHHHHHHHHhhCCH
Q 046354 353 CSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV----VLGALLGACRLHGDV 428 (510)
Q Consensus 353 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~ 428 (510)
..+.|+.+++++....-.+. -+-|...-..|++.+|-.|++++|.+-++...+..|+.. .|..+|.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 45667777777766666653 344666666777777777777777776666654455433 22333322
Q ss_pred HHHHHHHHHHH--hcCC---CCchh-HHHHHHH--HHHcCCChHHHHHHHHHHHhhccccc
Q 046354 429 RMADYIGERLI--ELQP---SSSGA-YVLSANV--HAARGEWDEFAQVRKKMERRVKKVAS 481 (510)
Q Consensus 429 ~~A~~~~~~~~--~~~p---~~~~~-~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~p~ 481 (510)
+..=.++. +..| ..+.. ...+..+ ....|+.++|..+-+.+....+..++
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 22222222 1111 22222 3333333 34467777777777777644444443
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=88.70 E-value=20 Score=35.43 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=21.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHh
Q 046354 211 MIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSC 250 (510)
Q Consensus 211 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 250 (510)
...++.-.|+++.|..++-.. ...+.+.+...+..+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~ 335 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL 335 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc
Confidence 344555677788777766644 345555555555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.66 E-value=2.9 Score=31.62 Aligned_cols=80 Identities=9% Similarity=-0.129 Sum_probs=58.8
Q ss_pred hHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHcCCChHHHHHHH
Q 046354 395 VKEAMRVVSKMPPHERDHVVLGALLGACRLHG---DVRMADYIGERLIELQPS-SSGAYVLSANVHAARGEWDEFAQVRK 470 (510)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (510)
+....+-|..-....|+..+--.+.+++.++. +..+++.+++...+..|. .......|+-.+.+.|++++|+++.+
T Consensus 22 L~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 22 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444445433213577777777888887765 556899999999988884 34457788889999999999999999
Q ss_pred HHHH
Q 046354 471 KMER 474 (510)
Q Consensus 471 ~~~~ 474 (510)
.+.+
T Consensus 102 ~lL~ 105 (144)
T 1y8m_A 102 TLFE 105 (144)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7763
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.48 E-value=12 Score=32.83 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHhh
Q 046354 60 AESAMIDGYVKAGRVDEARKVFDEI 84 (510)
Q Consensus 60 ~~~~li~~~~~~~~~~~A~~~~~~~ 84 (510)
.|.++..-|.+.+++++|.+++...
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG 59 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3556666677777777777775543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.76 E-value=5.2 Score=27.85 Aligned_cols=57 Identities=19% Similarity=0.083 Sum_probs=41.9
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
.+.|++++|..+.+...-||...|-++.. .+.|-.+++..-+.++...| .|....|.
T Consensus 50 mNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 67888888888888888888888877654 45677777777777777766 45444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.01 E-value=16 Score=32.44 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHh
Q 046354 61 ESAMIDGYVKAGRVDEARKVFDE 83 (510)
Q Consensus 61 ~~~li~~~~~~~~~~~A~~~~~~ 83 (510)
|.++..-|.+.+++++|.+++-.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH
Confidence 44555566667777777776544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.01 E-value=5.5 Score=27.79 Aligned_cols=57 Identities=26% Similarity=0.244 Sum_probs=38.8
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV 347 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 347 (510)
.+.|++++|..+.+...-||...|-++.. .+.|-.+++..-+.++...| .|....|.
T Consensus 51 mNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 51 MNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 67788888888888888888888876654 34566677776666666655 44444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.78 E-value=17 Score=36.62 Aligned_cols=130 Identities=9% Similarity=-0.057 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCC-hhhHHHHHHhhccCCh--hh--HHHHHHHHHcCCC-hHHHHHHHHhcccc--------CCChhhHHH
Q 046354 62 SAMIDGYVKAGR-VDEARKVFDEIYEGNV--YS--WTSLISGYFKARQ-VDEGRRLFDRMPLK--------LKNVVSWTT 127 (510)
Q Consensus 62 ~~li~~~~~~~~-~~~A~~~~~~~~~~~~--~~--~~~li~~~~~~g~-~~~A~~~~~~m~~~--------~~~~~~~~~ 127 (510)
..|+..+...++ ++.|..+|+++.+.+. .+ ...++..+.+.++ --+|.+++.+..+. .+.......
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455565555666 5778999998855333 22 2233333333332 23455555444321 111100000
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046354 128 VVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMP 201 (510)
Q Consensus 128 ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 201 (510)
+.. ........-++.+...|+++.|+++-++.. +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 332 ~~~----------~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMN----------CMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccC----------cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 000 011223334566778899999999988877 4457789999999999999999999999886
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=2.9 Score=38.46 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH----hhCCCCCcchhH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR----AYGFKPRAEHYS 383 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 383 (510)
+...++..+...|++++|...+..+... -+-+...+..++.++...|+..+|++.|+.+.+ +.|+.|++.+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3455677888899999999999998876 366778999999999999999999999988755 348888877643
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=86.08 E-value=12 Score=30.18 Aligned_cols=154 Identities=8% Similarity=0.084 Sum_probs=96.5
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhc
Q 046354 56 RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135 (510)
Q Consensus 56 p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~ 135 (510)
++...-...+.++.+.+..+....+.+.+..++.......+..+.+.|+.+....+.+.+.. ++...-...+.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~----- 98 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKD--EDGWVRQSAAV----- 98 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CCHHHHHHHHH-----
Confidence 67777777777788888766666666666667777777777777777766555444444443 45443333333
Q ss_pred CCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 046354 136 GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRY 215 (510)
Q Consensus 136 ~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 215 (510)
++.+.++.+....+.+.+..++..+-...+.++.+.|+.+....+...+..++..+-...+.++
T Consensus 99 ----------------aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL 162 (201)
T 3ltj_A 99 ----------------ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 162 (201)
T ss_dssp ----------------HHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ----------------HHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3334444433444444444677777777788888888765555555555667777777777777
Q ss_pred HhcCChHHHHHHHHHHHH
Q 046354 216 ARNGPEGAAMKLLNLMFQ 233 (510)
Q Consensus 216 ~~~~~~~~A~~~~~~m~~ 233 (510)
.+.|. .++...+..+.+
T Consensus 163 ~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 163 GEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHCS-HHHHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHHHh
Confidence 77765 345555555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=85.62 E-value=36 Score=35.17 Aligned_cols=148 Identities=12% Similarity=-0.034 Sum_probs=85.7
Q ss_pred ccccChhhHHHHhcccCC-CChhh--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHH---HHHHhcCcCCcHHH
Q 046354 288 GFQLDVNSARLAFERLEA-KDVVS--WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFV---GVLSDCSHAGLVEK 361 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~li~~~~~~g~~~~ 361 (510)
.-.|+.+....++..+.+ .+... .-.+.-++...|+.+.+..+++.+... ..|.. -|. .+.-+|+..|+...
T Consensus 501 vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~v-Rygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLL-RYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHTTTSCCHHH
T ss_pred cccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHhcCCCCHHH
Confidence 555666666666654432 22222 233334455779999999998888763 12222 232 34457889999888
Q ss_pred HHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCH-HHHHHHHHHHH
Q 046354 362 GRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDV-RMADYIGERLI 439 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 439 (510)
..+++..+... ...+..-...+.-++...|+.+.+.++++.+... .|....--.+.-+....|+. .++..++..+.
T Consensus 579 Iq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 579 VKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 88898888763 2233333334444555567777777777755532 44444333333444444443 66777887775
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.28 E-value=2 Score=36.58 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=39.4
Q ss_pred HHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
...+.|.+++|++....-.+..| |...-..|+.-++-.|++++|.+-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34566777777766665554555 55566666677777777777777777777777765
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.23 E-value=9.5 Score=26.60 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=46.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 046354 181 ITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244 (510)
Q Consensus 181 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 244 (510)
+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+..+..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345778899999999999988899999987764 57888888888887776665 34444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.76 E-value=29 Score=31.78 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCC-HHHHHHHHhhCCC---CChhhH--
Q 046354 143 VISWTTMCTGLERNAMTKLAREYFVQMPN--------KDIVAWNAMITAYVDAGN-MAQASELFNLMPQ---RNVWTW-- 208 (510)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~-- 208 (510)
......+...|.+.|+.++..+++....+ ........++..+....+ .+.-.++..+..+ .+-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999999999888761 123345667777766433 3333444433332 111223
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHHC
Q 046354 209 ----NAMIDRYARNGPEGAAMKLLNLMFQS 234 (510)
Q Consensus 209 ----~~li~~~~~~~~~~~A~~~~~~m~~~ 234 (510)
.-++..|...|++.+|.+++.++.+.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~ 128 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRE 128 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 25788999999999999999988764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.29 E-value=3 Score=31.01 Aligned_cols=61 Identities=10% Similarity=0.222 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 325 FQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
-+..+-++.+....+-|++......+++|.+.+|+..|.++|+-++.+ ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 345566666667778888888888888888888898898888888775 3344556766654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.86 E-value=12 Score=26.24 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 046354 409 ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLS 452 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 452 (510)
-|++.+..+.+.+|.+.+|+..|+++++-++....+....|-.+
T Consensus 42 VP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 42 VPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 78999999999999999999999999998885554444444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 510 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 6e-05
Identities = 51/402 (12%), Positives = 109/402 (27%), Gaps = 58/402 (14%)
Query: 68 YVKAGRVDEARKVFDEIYE---GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVS 124
+AG + A + +++ N L S +F+ R++D +K +++
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA-IKQNPLLA 67
Query: 125 WTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAY 184
LG + E I L+ + + + D+ +
Sbjct: 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 185 VDAGNMAQASELFNLMPQRNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCT 244
+ + + Y + + Q F +
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK-----------AIETQPNFAVAWSNLG 176
Query: 245 SILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLE 304
+ + + + A+ L + + + A A+ R
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF------DRAVAAYLRAL 230
Query: 305 AKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRK 364
+ + N + GL++
Sbjct: 231 SLSPNHAV----VHGNLACVYY----------------------------EQGLIDLAID 258
Query: 365 TFNLMSRAYGFKPR-AEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLG-AC 422
T+ RA +P + Y LA+ L+ G V EA + H L
Sbjct: 259 TYR---RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315
Query: 423 RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464
R G++ A + + +E+ P + A+ A+V +G+ E
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.05 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.92 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.86 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.81 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.69 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.47 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.39 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.34 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.33 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.32 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.24 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.23 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.09 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.0 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.94 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.91 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.9 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.82 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.73 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.71 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.47 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.21 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.84 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.77 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.62 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.07 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.95 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.69 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.93 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.5 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.21 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.9e-23 Score=195.56 Aligned_cols=368 Identities=13% Similarity=0.083 Sum_probs=242.1
Q ss_pred HHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-ChhhHHHHHHHHHcCCChHH
Q 046354 32 ITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NVYSWTSLISGYFKARQVDE 107 (510)
Q Consensus 32 i~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 107 (510)
...+.+.|++++|++.|+++.+..| +...+..+..++.+.|++++|...|+..++ | +..+|..+...|.+.|++++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 3445566777777777777666655 345566666666677777777777766643 2 33566666667777777777
Q ss_pred HHHHHHhccccCC-ChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhh---CCCCChhHHHHHHHH
Q 046354 108 GRRLFDRMPLKLK-NVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQ---MPNKDIVAWNAMITA 183 (510)
Q Consensus 108 A~~~~~~m~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~li~~ 183 (510)
|...+....+..| +...+..........+.... +...... ...............
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---------------------AVQAYVSALQYNPDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSH---------------------HHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccc---------------------ccccccccccccccccccccccccc
Confidence 7777766665422 22222222222222111111 1111111 112233333344444
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHH
Q 046354 184 YVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAH 260 (510)
Q Consensus 184 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 260 (510)
....+....+...+..... .+...+..+...+...|++++|...+++..+. .|+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~-------------------- 202 (388)
T d1w3ba_ 145 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNF-------------------- 202 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTC--------------------
T ss_pred ccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--Cccc--------------------
Confidence 4555555555554444332 23445555556666666666666666665442 1221
Q ss_pred HHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 046354 261 ALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKS 337 (510)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 337 (510)
...+..+...+ ...|++++|...+++... .+...+..+...+.+.|++++|...|++..+.
T Consensus 203 -----------~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 203 -----------LDAYINLGNVL-----KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp -----------HHHHHHHHHHH-----HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHhhhh-----hccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11222222333 555666666666655443 34556777888899999999999999999885
Q ss_pred CCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHH
Q 046354 338 GTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLG 416 (510)
Q Consensus 338 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 416 (510)
. +-+..++..+...+...|++++|.+.++..... .+.+...+..+...+.+.|++++|.+.+++..+..| +..++.
T Consensus 267 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T d1w3ba_ 267 Q-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp C-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2 334568888889999999999999999998874 456778888999999999999999999999988877 566889
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 417 ALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 417 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
.+...+...|++++|...|+++++++|+++.++..++.+|.+.|+
T Consensus 344 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.3e-21 Score=180.05 Aligned_cols=362 Identities=11% Similarity=0.061 Sum_probs=270.4
Q ss_pred ccCCCChHHHHHHHhhcC--CC-ChhhHHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHH
Q 046354 4 FGCTGKVKEATKLFDEMS--QP-DPVSCASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARK 79 (510)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~ 79 (510)
+.+.|++++|++.|+++. .| ++..+..+...+.+.|++++|+..|+++.+..| +..++..+..++.+.|++++|..
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccc
Confidence 456899999999999986 34 578889999999999999999999999998877 46788899999999999999999
Q ss_pred HHHhhccC---ChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Q 046354 80 VFDEIYEG---NVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLER 155 (510)
Q Consensus 80 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~ 155 (510)
.+....+. +...+..........+....+.......... .......... ......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ 147 (388)
T d1w3ba_ 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL---------------------GNLLKA 147 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHH---------------------HHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------------cccccc
Confidence 99998653 3334444444455555555555555444433 2222222222 222333
Q ss_pred cCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 046354 156 NAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLN 229 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~ 229 (510)
.+....+...+.... +.+...+..+...+...|++++|...++...+ .+...|..+...+...|++++|...++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 227 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHH
Confidence 444444444444433 34456777778888888888888888877654 345678888888888899999988888
Q ss_pred HHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC---C
Q 046354 230 LMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---K 306 (510)
Q Consensus 230 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~ 306 (510)
+....+.. ....+..+...+ ...|++++|...|++..+ .
T Consensus 228 ~~~~~~~~---------------------------------~~~~~~~l~~~~-----~~~~~~~~A~~~~~~al~~~p~ 269 (388)
T d1w3ba_ 228 RALSLSPN---------------------------------HAVVHGNLACVY-----YEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHCTT---------------------------------CHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHTCSS
T ss_pred HhHHHhhh---------------------------------HHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhCCC
Confidence 88664321 122222333344 677888888888887644 3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 386 (510)
+..+|..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++..+. .+.++.++..+.
T Consensus 270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la 346 (388)
T d1w3ba_ 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLA 346 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 5668889999999999999999999998876 3667778888899999999999999999998853 233577888999
Q ss_pred hHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCC
Q 046354 387 DILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGD 427 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 427 (510)
.+|.+.|++++|...|++..+..| +..+|..+...|.+.||
T Consensus 347 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999988888 56789999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4.7e-15 Score=134.28 Aligned_cols=264 Identities=14% Similarity=0.028 Sum_probs=189.2
Q ss_pred HHHHHHhcCchHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChH
Q 046354 149 MCTGLERNAMTKLAREYFVQMP---NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEG 222 (510)
Q Consensus 149 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 222 (510)
....+.+.|++++|...|+++. +.++.+|..+..+|...|++++|...|.+..+ .+...|..+...|...|+++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 4556788899999999999987 44577899999999999999999999988765 35678888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcc
Q 046354 223 AAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFER 302 (510)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 302 (510)
+|.+.+++.... .|+........... ...
T Consensus 105 ~A~~~~~~~~~~--~~~~~~~~~~~~~~-------------------------------------~~~------------ 133 (323)
T d1fcha_ 105 QACEILRDWLRY--TPAYAHLVTPAEEG-------------------------------------AGG------------ 133 (323)
T ss_dssp HHHHHHHHHHHT--STTTGGGCC---------------------------------------------------------
T ss_pred ccccchhhHHHh--ccchHHHHHhhhhh-------------------------------------hhh------------
Confidence 999999988763 23211100000000 000
Q ss_pred cCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcch
Q 046354 303 LEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSG-TKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEH 381 (510)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 381 (510)
.+.......+..+...+.+.+|...+.+..+.. -.++...+..+...+...|++++|...++..... .+-+...
T Consensus 134 ---~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 208 (323)
T d1fcha_ 134 ---AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL 208 (323)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ---cccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccc
Confidence 000001111223344456677888888777642 1234456777778888899999999999998874 2335777
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-----------H
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA-----------Y 449 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~ 449 (510)
+..+...|.+.|++++|.+.+++..+..| +..+|..+..+|...|++++|...|++++++.|++..+ +
T Consensus 209 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 288 (323)
T d1fcha_ 209 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 288 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred hhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHH
Confidence 88899999999999999999998876677 56688899999999999999999999999888877554 3
Q ss_pred HHHHHHHHHcCCChHHHHH
Q 046354 450 VLSANVHAARGEWDEFAQV 468 (510)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~ 468 (510)
..+..++...|+.+.+...
T Consensus 289 ~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 289 STLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4566677777877766544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4.7e-15 Score=134.24 Aligned_cols=230 Identities=16% Similarity=0.118 Sum_probs=169.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhh
Q 046354 179 AMITAYVDAGNMAQASELFNLMPQ--RN-VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLE 255 (510)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 255 (510)
.....+.+.|++++|...|+++.+ |+ ..+|..+..++...|++++|...|.+..+. .|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p----------------- 84 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KP----------------- 84 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cc-----------------
Confidence 345556677777777777776654 43 345666666777777777777777666431 11
Q ss_pred hhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 046354 256 NMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARML 335 (510)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 335 (510)
.+...|..+...|...|++++|.+.+++..
T Consensus 85 --------------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 114 (323)
T d1fcha_ 85 --------------------------------------------------DNQTALMALAVSFTNESLQRQACEILRDWL 114 (323)
T ss_dssp --------------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------------------------------------------ccccccccccccccccccccccccchhhHH
Confidence 234567777788888888888888888887
Q ss_pred HcCCCCCchhHH----------------HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHH
Q 046354 336 KSGTKPDEITFV----------------GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAM 399 (510)
Q Consensus 336 ~~g~~p~~~~~~----------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 399 (510)
.. .|+..... ..+..+...+...++...+....+.....+++.++..+...+...|++++|.
T Consensus 115 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~ 192 (323)
T d1fcha_ 115 RY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 192 (323)
T ss_dssp HT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhh
Confidence 64 33321110 1111222345677788888887765233445677888899999999999999
Q ss_pred HHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhcc
Q 046354 400 RVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVKK 478 (510)
Q Consensus 400 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 478 (510)
..+++.....| +..+|..+...+...|++++|.+.|+++++.+|+++.++..++.+|...|++++|+..|++..+-.+.
T Consensus 193 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 272 (323)
T d1fcha_ 193 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 272 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 99999876667 57789999999999999999999999999999999999999999999999999999999987743333
Q ss_pred c
Q 046354 479 V 479 (510)
Q Consensus 479 ~ 479 (510)
.
T Consensus 273 ~ 273 (323)
T d1fcha_ 273 S 273 (323)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=6e-10 Score=101.29 Aligned_cols=262 Identities=11% Similarity=-0.010 Sum_probs=164.4
Q ss_pred HHHHHHHHhcCchHHHHHHHhhCC--CCC------hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHH
Q 046354 147 TTMCTGLERNAMTKLAREYFVQMP--NKD------IVAWNAMITAYVDAGNMAQASELFNLMPQ-----RN----VWTWN 209 (510)
Q Consensus 147 ~~l~~~~~~~~~~~~a~~~~~~~~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~ 209 (510)
......+...|++++|.+++++.. .|+ ...+..+..+|...|++++|...|++..+ ++ ...+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 334555667777777777777654 222 13455566677777777777777766543 11 23345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccccccc
Q 046354 210 AMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGF 289 (510)
Q Consensus 210 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (510)
.+...+...|++..+...+.+.....
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~------------------------------------------------------ 121 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLI------------------------------------------------------ 121 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------------------------------
Confidence 55566666777777776666553210
Q ss_pred ccChhhHHHHhcccCCC----ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----chhHHHHHHhcCcCCcHHH
Q 046354 290 QLDVNSARLAFERLEAK----DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPD----EITFVGVLSDCSHAGLVEK 361 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~ 361 (510)
.....+ ....+..+...+...|+++.+...+........... ...+......+...++...
T Consensus 122 -----------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T d1hz4a_ 122 -----------NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 190 (366)
T ss_dssp -----------HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred -----------HhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHH
Confidence 000000 112344556677778888888888877776422111 2233444455566777777
Q ss_pred HHHHHHHHHHhhCCCCC-----cchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-----cHHHHHHHHHHHHhhCCHHHH
Q 046354 362 GRKTFNLMSRAYGFKPR-----AEHYSCLADILRRAGQVKEAMRVVSKMPPHER-----DHVVLGALLGACRLHGDVRMA 431 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~A 431 (510)
+...+............ ...+..+...+...|++++|...+++.....| ....+..+...+...|++++|
T Consensus 191 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 270 (366)
T d1hz4a_ 191 ARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA 270 (366)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777666554222221 22345566677888999999998888765532 233556677788888999999
Q ss_pred HHHHHHHHh------cCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 432 DYIGERLIE------LQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 432 ~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
...+++++. ..|.....+..++.+|...|++++|.+.+++..
T Consensus 271 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 271 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999988872 234445568888899999999999999888765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=7.6e-11 Score=106.50 Aligned_cols=261 Identities=9% Similarity=-0.044 Sum_probs=183.9
Q ss_pred HhcCchHHHHHHHhhCC--CCCh-hHHHHHHHH----------HHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 046354 154 ERNAMTKLAREYFVQMP--NKDI-VAWNAMITA----------YVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYAR 217 (510)
Q Consensus 154 ~~~~~~~~a~~~~~~~~--~~~~-~~~~~li~~----------~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 217 (510)
...+..++|.++++... .|+. ..|+..-.. +...|++++|+.+++...+ .+...|..+..++..
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence 33344578999998887 5554 344332222 3334557888888888765 356677777777776
Q ss_pred cC--ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhh
Q 046354 218 NG--PEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNS 295 (510)
Q Consensus 218 ~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 295 (510)
.+ ++++|...+.++..... ++...+.... ...+ ...+..+.
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~-------------------------------~~~~-----~~~~~~~~ 162 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADE-RNFHCWDYRR-------------------------------FVAA-----QAAVAPAE 162 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHH-------------------------------HHHH-----HTCCCHHH
T ss_pred hccccHHHHHHHHHHHHhhCc-hhhhhhhhHH-------------------------------HHHH-----HhccccHH
Confidence 65 47899999999876421 1222222111 1222 66788999
Q ss_pred HHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHh
Q 046354 296 ARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRA 372 (510)
Q Consensus 296 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 372 (510)
|...++.... .+..+|+.+...+.+.|++++|...++...+. .|+.. .....+...+..+.+...+.....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~- 236 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL- 236 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH-
Confidence 9999998887 35668888999999999998887666544432 22211 122223344556667777777765
Q ss_pred hCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHH
Q 046354 373 YGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVL 451 (510)
Q Consensus 373 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 451 (510)
..+++...+..++..+...|+.++|...+.+..+..| +..++..+...+...|++++|...++++++++|.....|..
T Consensus 237 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 237 -GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp -SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred -hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 3456677778888899999999999999999887777 55688889999999999999999999999999998888888
Q ss_pred HHHHHHH
Q 046354 452 SANVHAA 458 (510)
Q Consensus 452 l~~~~~~ 458 (510)
+...+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8777653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=3.8e-10 Score=97.72 Aligned_cols=202 Identities=8% Similarity=-0.093 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhh
Q 046354 175 VAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCE 251 (510)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 251 (510)
.+|..+..+|.+.|++++|...|++..+ .++.+|+.+..++.+.|++++|+..|+++.+. .|+
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~------------ 103 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPT------------ 103 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--Hhh------------
Confidence 4566677788888888888888877664 45677888888888888888888888887652 121
Q ss_pred hhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 046354 252 GMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLF 331 (510)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 331 (510)
+..+|..+..+|...|++++|...|
T Consensus 104 -------------------------------------------------------~~~a~~~lg~~~~~~g~~~~A~~~~ 128 (259)
T d1xnfa_ 104 -------------------------------------------------------YNYAHLNRGIALYYGGRDKLAQDDL 128 (259)
T ss_dssp -------------------------------------------------------CTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------------------------------hhhhHHHHHHHHHHHhhHHHHHHHH
Confidence 2335666677788888899999988
Q ss_pred HHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCChHHHHHHHhhCCC
Q 046354 332 ARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQVKEAMRVVSKMPP 407 (510)
Q Consensus 332 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 407 (510)
+...+.. +.+......+..++...+..+.+..+...... ..+....++ ++..+.. .+..+.+...+.....
T Consensus 129 ~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (259)
T d1xnfa_ 129 LAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS 203 (259)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred HHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888753 33333333333344444554444444444433 223322222 2222221 1222333333222221
Q ss_pred CCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHH
Q 046354 408 HER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYV 450 (510)
Q Consensus 408 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 450 (510)
..| ...+|..+...+...|++++|...|++++..+|++...|.
T Consensus 204 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 204 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 233 2346777888899999999999999999999998754443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=4.3e-09 Score=95.40 Aligned_cols=191 Identities=12% Similarity=0.015 Sum_probs=122.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCCCh------hHHHHHHHHHHhcCChhhHHHHHHhhcc-----CC----hhhH
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQRNI------VAESAMIDGYVKAGRVDEARKVFDEIYE-----GN----VYSW 92 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~ 92 (510)
.......+...|++++|++++++..+..|+. ..+..+..++...|++++|.+.++...+ ++ ..++
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3344566788999999999999988776642 4566778889999999999999998844 11 2456
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcccc---CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhC
Q 046354 93 TSLISGYFKARQVDEGRRLFDRMPLK---LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169 (510)
Q Consensus 93 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 169 (510)
..+...+...|++..+...+.+.... .+.. ........+..+...+...|+++.+...+...
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~---------------~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 159 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLE---------------QLPMHEFLVRIRAQLLWAWARLDEAEASARSG 159 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT---------------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc---------------hhhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence 67778888999999999988876542 1110 01112223344555666667777776666554
Q ss_pred C--------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C---ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 046354 170 P--------NKDIVAWNAMITAYVDAGNMAQASELFNLMPQ-------R---NVWTWNAMIDRYARNGPEGAAMKLLNLM 231 (510)
Q Consensus 170 ~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~---~~~~~~~li~~~~~~~~~~~A~~~~~~m 231 (510)
. ......+......+...|+..++...+..... . ....+..+...+...|++++|...++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (366)
T d1hz4a_ 160 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 239 (366)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4 11223444455566666776666655544321 1 1234555566667777777777777665
Q ss_pred HH
Q 046354 232 FQ 233 (510)
Q Consensus 232 ~~ 233 (510)
..
T Consensus 240 ~~ 241 (366)
T d1hz4a_ 240 AK 241 (366)
T ss_dssp CC
T ss_pred HH
Confidence 43
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.2e-09 Score=97.20 Aligned_cols=224 Identities=10% Similarity=0.044 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhcccc
Q 046354 206 WTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFW 285 (510)
Q Consensus 206 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (510)
..|+.+...+.+.+.+++|+.+++++++ +.|+..+. |+.....+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a-------------------------------~~~r~~~l--- 87 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTV-------------------------------WHFRRVLL--- 87 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHH-------------------------------HHHHHHHH---
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHH-------------------------------HHHHHHHH---
Confidence 4566666777778888888888888876 33443322 22222222
Q ss_pred cccccc-ChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHH
Q 046354 286 DWGFQL-DVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEK 361 (510)
Q Consensus 286 ~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 361 (510)
...| ++++|...+++..+ .+..+|..+...+.+.|++++|+..++++.+.. +-+...|..+...+...|++++
T Consensus 88 --~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~ 164 (315)
T d2h6fa1 88 --KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDN 164 (315)
T ss_dssp --HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred --HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHH
Confidence 3333 57788888777654 456789999999999999999999999999863 4556789999999999999999
Q ss_pred HHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCC------hHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHH
Q 046354 362 GRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQ------VKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADY 433 (510)
Q Consensus 362 a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~ 433 (510)
|.+.++.+.+. .| +...|+.+..++.+.|. +++|.+.+.+..+..| +...|..+...+.. ....++..
T Consensus 165 Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~ 240 (315)
T d2h6fa1 165 ELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPN 240 (315)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHH
T ss_pred HHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHH
Confidence 99999999875 44 56677777766666555 5788888888876677 66677777666554 44678889
Q ss_pred HHHHHHhcCCCCchh--HHHHHHHHHHc--CCChHHHHHHHHH
Q 046354 434 IGERLIELQPSSSGA--YVLSANVHAAR--GEWDEFAQVRKKM 472 (510)
Q Consensus 434 ~~~~~~~~~p~~~~~--~~~l~~~~~~~--g~~~~A~~~~~~~ 472 (510)
.++...++.|+.... +..++.+|... +..+.+...+++.
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 241 LLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999888876444 55667776553 5555555555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=9.3e-10 Score=97.83 Aligned_cols=191 Identities=5% Similarity=-0.029 Sum_probs=128.6
Q ss_pred hhhhhhhhccccccccccChhhHHHHhcccCC---CChhhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCchhHHHH
Q 046354 274 LTYKCTCHYVFWDWGFQLDVNSARLAFERLEA---KDVVSWTAMILAYSNHG-HGFQVFRLFARMLKSGTKPDEITFVGV 349 (510)
Q Consensus 274 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l 349 (510)
.++.+...+ .+.+..++|...++++.+ .+..+|+....++...| ++++|+..++...+.. +-+..+|..+
T Consensus 45 a~~~~~~~~-----~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~ 118 (315)
T d2h6fa1 45 VYDYFRAVL-----QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 118 (315)
T ss_dssp HHHHHHHHH-----HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHH-----HhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHH
Confidence 334444455 667777777777777765 24456777777766655 4777777777777642 3344577777
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhC--
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHG-- 426 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-- 426 (510)
...+...|++++|+..++++.+. -+.+...|..+...+.+.|++++|.+.++++.+..| +...|+.+...+.+.+
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred hHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence 77777777777787777777763 233566777777777777778888777777776666 5556766655554433
Q ss_pred ----CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 427 ----DVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 427 ----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+++|...+.++++.+|++...+..++.++...| .+++.+.++...
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 3567777777777777877777777777665444 567777776555
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=8.5e-09 Score=91.40 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=84.7
Q ss_pred ccccChhhHHHHhcccCC--C-C-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHh-cCcCCcHHHH
Q 046354 288 GFQLDVNSARLAFERLEA--K-D-VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSD-CSHAGLVEKG 362 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~--~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a 362 (510)
...|+.+.|..+|+++.+ | + ...|...+..+.+.|+.+.|.++|+++.+.+ +.+...|...... +...|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHH
Confidence 555666666666665543 1 1 2245666666666666666666666666542 2222333322221 2234566666
Q ss_pred HHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCC---Cc--HHHHHHHHHHHHhhCCHHHHHHHHHH
Q 046354 363 RKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHE---RD--HVVLGALLGACRLHGDVRMADYIGER 437 (510)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 437 (510)
..+|+.+.+. .+.++..+..+++.+.+.|+++.|..+|++..... |+ ...|...+..-..+|+.+.+..++++
T Consensus 189 ~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 189 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666653 33345556666666666666666666666543322 21 23555555555566666666666666
Q ss_pred HHhcCCCC
Q 046354 438 LIELQPSS 445 (510)
Q Consensus 438 ~~~~~p~~ 445 (510)
+.+..|..
T Consensus 267 ~~~~~~~~ 274 (308)
T d2onda1 267 RFTAFREE 274 (308)
T ss_dssp HHHHTTTT
T ss_pred HHHHCccc
Confidence 66655554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=4.9e-09 Score=93.02 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=147.5
Q ss_pred ccChhhHHHHhcccCC----CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHH
Q 046354 290 QLDVNSARLAFERLEA----KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKT 365 (510)
Q Consensus 290 ~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 365 (510)
.+..++|..+|++..+ .+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 3456778888877653 345578888889999999999999999998753222234688888888899999999999
Q ss_pred HHHHHHhhCCCCCcchhHhHHhH-HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 046354 366 FNLMSRAYGFKPRAEHYSCLADI-LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQP 443 (510)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 443 (510)
|+.+.+. .+.+...|...+.. +...|+.+.|..+|+.+....| +...|...+..+...|+++.|..+|++++...|
T Consensus 157 ~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9999863 33455555554443 3346899999999999886655 677899999999999999999999999998877
Q ss_pred CCch----hHHHHHHHHHHcCCChHHHHHHHHHHHhhccc
Q 046354 444 SSSG----AYVLSANVHAARGEWDEFAQVRKKMERRVKKV 479 (510)
Q Consensus 444 ~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 479 (510)
.++. .|...+......|+.+.+.++++++.+..+..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 6543 57778888888999999999999887555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1.3e-09 Score=94.22 Aligned_cols=163 Identities=6% Similarity=-0.069 Sum_probs=113.0
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHH
Q 046354 307 DVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLA 386 (510)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 386 (510)
++.+|+.+..+|.+.|++++|+..|++..+.. +-+..++..+..++...|+++.|...++...+. .+.+......+.
T Consensus 70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 146 (259)
T d1xnfa_ 70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLY 146 (259)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHH
Confidence 45678888999999999999999999999853 334567888888999999999999999999875 233444444444
Q ss_pred hHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHH----HhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCC
Q 046354 387 DILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGAC----RLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEW 462 (510)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (510)
..+.+.+..+.+..+........+....+.. +..+ ...+..+.+...+.......|....++..++.+|...|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 225 (259)
T d1xnfa_ 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 225 (259)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCH
Confidence 5555666555554444333222222222221 2222 2234455555555655566677777889999999999999
Q ss_pred hHHHHHHHHHH
Q 046354 463 DEFAQVRKKME 473 (510)
Q Consensus 463 ~~A~~~~~~~~ 473 (510)
++|.+.|++..
T Consensus 226 ~~A~~~~~~al 236 (259)
T d1xnfa_ 226 DSATALFKLAV 236 (259)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999776
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=8.8e-10 Score=99.31 Aligned_cols=279 Identities=11% Similarity=-0.023 Sum_probs=181.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccccCCChh-hHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC-
Q 046354 93 TSLISGYFKARQVDEGRRLFDRMPLKLKNVV-SWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP- 170 (510)
Q Consensus 93 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 170 (510)
..++....+.+..++|++++++..+..|+.. .|+..-..+...+.. ...+...|.+++|+.+++...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~-----------~~~~~~~~~~~~al~~~~~~l~ 101 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE-----------KSPEESAALVKAELGFLESCLR 101 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-----------SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhh-----------cchHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445788888888776655543 343332222211111 112455667788888888876
Q ss_pred --CCChhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhhHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhh
Q 046354 171 --NKDIVAWNAMITAYVDAG--NMAQASELFNLMPQ---RNVWTWNA-MIDRYARNGPEGAAMKLLNLMFQSRFMPNETT 242 (510)
Q Consensus 171 --~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 242 (510)
+.+...|..+..++...+ ++++|...+..+.+ ++...+.. ....+...+.+++|+..++.+.... |+
T Consensus 102 ~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~--- 176 (334)
T d1dcea1 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FS--- 176 (334)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CC---
T ss_pred hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CC---
Confidence 456667777777777665 48899998888754 45555544 4467777899999999999886643 22
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHhcC
Q 046354 243 CTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHG 322 (510)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (510)
+...+..+...+ ...|++++|...+.....-..... .....+...+
T Consensus 177 ----------------------------~~~a~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~ 222 (334)
T d1dcea1 177 ----------------------------NYSSWHYRSCLL-----PQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTD 222 (334)
T ss_dssp ----------------------------CHHHHHHHHHHH-----HHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHC
T ss_pred ----------------------------CHHHHHHHHHHH-----HHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhc
Confidence 223333334444 666777776666555444222222 2334455667
Q ss_pred ChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHH
Q 046354 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVV 402 (510)
Q Consensus 323 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (510)
..+++...+....... +++...+..+...+...|+.++|...+.+..+. .+.+...+..++.++.+.|++++|.+.+
T Consensus 223 ~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~ 299 (334)
T d1dcea1 223 PNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYF 299 (334)
T ss_dssp SSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred chhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7888888888887753 455566777777777889999999998887753 2235677788999999999999999999
Q ss_pred hhCCCCCCc-HHHHHHHHHHHHh
Q 046354 403 SKMPPHERD-HVVLGALLGACRL 424 (510)
Q Consensus 403 ~~~~~~~p~-~~~~~~l~~~~~~ 424 (510)
++..+..|+ ...|+.|...+..
T Consensus 300 ~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 300 STLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHCcccHHHHHHHHHHHhH
Confidence 999878885 4466666655554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.7e-09 Score=80.19 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=61.3
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDE 464 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (510)
...+.+.|++++|+..|.+..+..| +...|..+..++...|++++|+..++++++++|+++.+|..++.++...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 4455666777777777777665555 555677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHH
Q 046354 465 FAQVRKKME 473 (510)
Q Consensus 465 A~~~~~~~~ 473 (510)
|+..+++..
T Consensus 90 A~~~~~~a~ 98 (117)
T d1elwa_ 90 AKRTYEEGL 98 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777555
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=3.4e-09 Score=87.58 Aligned_cols=104 Identities=10% Similarity=-0.133 Sum_probs=53.8
Q ss_pred CCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHH
Q 046354 341 PDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALL 419 (510)
Q Consensus 341 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~ 419 (510)
|+...+......+...|++++|+..|+++... .+.++..|..++.+|.+.|++++|+..|++..+..| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 34444444455555555555555555555542 122444455555555555555555555555554444 344555555
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCCc
Q 046354 420 GACRLHGDVRMADYIGERLIELQPSSS 446 (510)
Q Consensus 420 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 446 (510)
.+|...|++++|...|++++++.|++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 555555555555555555555554433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.81 E-value=5.1e-09 Score=76.85 Aligned_cols=90 Identities=10% Similarity=-0.079 Sum_probs=83.1
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
..+...+.+.|++++|...|++.....| +..+|..+..++.+.|++++|+..|+++++++|+++..+..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 3466778899999999999999987778 677999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHH
Q 046354 462 WDEFAQVRKKM 472 (510)
Q Consensus 462 ~~~A~~~~~~~ 472 (510)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1e-08 Score=75.94 Aligned_cols=105 Identities=10% Similarity=-0.033 Sum_probs=90.6
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV 428 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 428 (510)
...+...|++++|+..|+.+.+. .+.++..|..+..+|.+.|++++|+..+.+..+..| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 45567789999999999999874 344677889999999999999999999999887666 777999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 429 RMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 429 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
++|+..|+++++.+|+++.++..+.++-
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999999998888877654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3.1e-08 Score=77.97 Aligned_cols=122 Identities=11% Similarity=-0.016 Sum_probs=101.2
Q ss_pred HHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh
Q 046354 346 FVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL 424 (510)
Q Consensus 346 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 424 (510)
+......+.+.|++++|...|+++.+. .+.+...|..+..+|...|++++|...|+++.+..| +..+|..++.++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 445556788999999999999999975 244778888999999999999999999999987777 56799999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HHcCCChHHHHHH
Q 046354 425 HGDVRMADYIGERLIELQPSSSGAYVLSANVH--AARGEWDEFAQVR 469 (510)
Q Consensus 425 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~ 469 (510)
.|++++|...+++++.+.|+++..+..+..+. ...+.+++|....
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999988877776664 3445566666553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=1.6e-08 Score=83.33 Aligned_cols=90 Identities=13% Similarity=-0.031 Sum_probs=42.0
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGE 461 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (510)
...+..|.+.|++++|+..|++..+..| +...|..+..+|.+.|++++|+..|+++++++|+++.+|..++.+|...|+
T Consensus 8 ~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~ 87 (201)
T d2c2la1 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 87 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 3334444444444444444444443333 333444444444444444444444444444444444444444444444444
Q ss_pred ChHHHHHHHHH
Q 046354 462 WDEFAQVRKKM 472 (510)
Q Consensus 462 ~~~A~~~~~~~ 472 (510)
+++|+..|++.
T Consensus 88 ~~~A~~~~~~a 98 (201)
T d2c2la1 88 YDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3.7e-08 Score=77.56 Aligned_cols=97 Identities=8% Similarity=-0.017 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHh
Q 046354 311 WTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILR 390 (510)
Q Consensus 311 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (510)
+......|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...|+.+.+. .+.+...|..++.++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHH
Confidence 4444555666666666666666666642 334445566666666666666666666666653 1224456666666666
Q ss_pred hcCChHHHHHHHhhCCCCCC
Q 046354 391 RAGQVKEAMRVVSKMPPHER 410 (510)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p 410 (510)
..|++++|...+++.....|
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKP 109 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HcCCHHHHHHHHHHHHHcCC
Confidence 66666666666666655555
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=7.7e-08 Score=78.14 Aligned_cols=93 Identities=11% Similarity=0.005 Sum_probs=83.1
Q ss_pred HhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHH
Q 046354 386 ADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (510)
...+...|+++.|++.|.++. +|+..+|..+...|...|++++|+..|+++++++|+.+..|..++.+|.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~--~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 445678999999999999876 778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 046354 466 AQVRKKMERRVKKVA 480 (510)
Q Consensus 466 ~~~~~~~~~~~~~~p 480 (510)
++.|++.....+..+
T Consensus 90 ~~~~~kAl~~~~~n~ 104 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQ 104 (192)
T ss_dssp HHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHhCccCc
Confidence 999998764444333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.5e-07 Score=75.07 Aligned_cols=137 Identities=11% Similarity=-0.005 Sum_probs=98.0
Q ss_pred ccccChhhHHHHhcccCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHH
Q 046354 288 GFQLDVNSARLAFERLEAKDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 367 (510)
...|+++.|.+.|.++..++..+|..+..+|...|++++|+..|++.++.. +-+...|..+..++.+.|++++|...|+
T Consensus 16 ~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLK 94 (192)
T ss_dssp HHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 667888888888888877888888888888888888888888888888753 3445577778888888888888888888
Q ss_pred HHHHhhCCCCCcch-hHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 368 LMSRAYGFKPRAEH-YSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 368 ~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
+.... .+++... |..+ |. ...+ ...++..+..++.+.|++++|.+.+++++++.|..
T Consensus 95 kAl~~--~~~n~~~~~~~~-------~~------------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 95 EALIQ--LRGNQLIDYKIL-------GL------------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHT--TTTCSEEECGGG-------TB------------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHh--CccCchHHHHHh-------hh------------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 87753 2332211 1110 00 0011 12455667778888999999999999998888875
Q ss_pred c
Q 046354 446 S 446 (510)
Q Consensus 446 ~ 446 (510)
.
T Consensus 154 ~ 154 (192)
T d1hh8a_ 154 R 154 (192)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=5.2e-08 Score=72.16 Aligned_cols=109 Identities=15% Similarity=0.030 Sum_probs=86.3
Q ss_pred HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCC---hHHHHHHHhhCCCCCCcH---HHHHHHHH
Q 046354 347 VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQ---VKEAMRVVSKMPPHERDH---VVLGALLG 420 (510)
Q Consensus 347 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~---~~~~~l~~ 420 (510)
..++..+...+++++|.+.|+..... -+.++.++..++.++.+.++ +++|+.+++++....|++ .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35666777788999999999999874 34577888888888887554 456999999988666543 37788999
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 421 ACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 421 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
+|.+.|++++|.+.|+++++++|++..+......+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999877666554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=6.3e-07 Score=78.22 Aligned_cols=203 Identities=10% Similarity=-0.025 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 046354 177 WNAMITAYVDAGNMAQASELFNLMPQ-----RN----VWTWNAMIDRYARNGPEGAAMKLLNLMFQSRFMPNETTCTSIL 247 (510)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 247 (510)
|......|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|...+++....-
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~------------ 107 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF------------ 107 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh------------
Confidence 33445666777777777777665543 11 3467778888888888988888888764410
Q ss_pred HHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCCCChhhHHHHHHHHHh-cCChhh
Q 046354 248 TSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEAKDVVSWTAMILAYSN-HGHGFQ 326 (510)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 326 (510)
...|+...+. .++..+...|.. .|++++
T Consensus 108 ----------------------------------------~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~ 136 (290)
T d1qqea_ 108 ----------------------------------------THRGQFRRGA-----------NFKFELGEILENDLHDYAK 136 (290)
T ss_dssp ----------------------------------------HHTTCHHHHH-----------HHHHHHHHHHHHTTCCHHH
T ss_pred ----------------------------------------hhcccchhHH-----------HHHHHHHHhHhhHHHHHHH
Confidence 1111111111 123444445533 477777
Q ss_pred HHHHHHHHHHc----CCCCC-chhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCc-----chhHhHHhHHhhcCChH
Q 046354 327 VFRLFARMLKS----GTKPD-EITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRA-----EHYSCLADILRRAGQVK 396 (510)
Q Consensus 327 A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~ 396 (510)
|+..+++..+. +.++. ..++..+...+...|++++|...++++.......+.. ..+...+..+...|+++
T Consensus 137 A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 216 (290)
T d1qqea_ 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHH
Confidence 77777666432 11111 2345666777777888888888887776641111111 11233444556678888
Q ss_pred HHHHHHhhCCCCCCc------HHHHHHHHHHHHhh--CCHHHHHHHHHHHHhcC
Q 046354 397 EAMRVVSKMPPHERD------HVVLGALLGACRLH--GDVRMADYIGERLIELQ 442 (510)
Q Consensus 397 ~A~~~~~~~~~~~p~------~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~ 442 (510)
.|...+++..+..|. ......++.++... +.+.+|+..|+++.+++
T Consensus 217 ~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 888888877765442 22344555555442 34677777776554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.9e-07 Score=74.05 Aligned_cols=134 Identities=13% Similarity=0.008 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
.+......+.+.|++++|+..|++.+..- |....+ .. .-......+. ..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~~---------~~---~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF---------SN---EEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC---------CS---HHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcccc---------ch---HHHhhhchhH--------HHHHHHHHHHH
Confidence 45556677888999999999998887641 111100 00 1111111111 12567788999
Q ss_pred hhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEF 465 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (510)
.+.|++++|+..+++.....| +..+|..+..+|...|++++|...|+++++++|+++.....+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987777 7779999999999999999999999999999999999988888887766655543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=2.7e-06 Score=74.02 Aligned_cols=191 Identities=9% Similarity=-0.003 Sum_probs=135.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHhcccc---CC----ChhHHHHHHHHHHhcCChhhHHHHHHhhcc----C-----Chh
Q 046354 27 SCASMITVFLRNHDLPKAEALFRAMPES---QR----NIVAESAMIDGYVKAGRVDEARKVFDEIYE----G-----NVY 90 (510)
Q Consensus 27 ~~~~li~~~~~~~~~~~A~~~~~~~~~~---~p----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~-----~~~ 90 (510)
.|......|...|++++|...|.++.+. .. -..+|..+..+|.+.|++++|.+.++...+ . ...
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 4667788898999999999999998764 11 235788889999999999999999998744 1 134
Q ss_pred hHHHHHHHHHc-CCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhC
Q 046354 91 SWTSLISGYFK-ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQM 169 (510)
Q Consensus 91 ~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 169 (510)
++..+...|.. .|++++|.+.|++..+. +...+... ....++..++..+...|++++|.+.|+++
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l-------------~~~~~~~~-~~~~~~~~la~~~~~~g~y~~A~~~~~~~ 184 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEW-------------YAQDQSVA-LSNKCFIKCADLKALDGQYIEASDIYSKL 184 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------------HHHTTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHH-------------HHhcCchh-hhhhHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 56667777744 69999999999887653 11111111 12345667788899999999999999886
Q ss_pred C--CCCh--------hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--------hhhHHHHHHHHHh--cCChHHHHHHHH
Q 046354 170 P--NKDI--------VAWNAMITAYVDAGNMAQASELFNLMPQRN--------VWTWNAMIDRYAR--NGPEGAAMKLLN 229 (510)
Q Consensus 170 ~--~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~--~~~~~~A~~~~~ 229 (510)
. .++. ..+...+.++...|+++.|...+++..+-+ ......++.++.. .+.+++|+..|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6 1111 124455667788999999999999987622 2234556666654 345788888887
Q ss_pred HH
Q 046354 230 LM 231 (510)
Q Consensus 230 ~m 231 (510)
.+
T Consensus 265 ~~ 266 (290)
T d1qqea_ 265 NF 266 (290)
T ss_dssp TS
T ss_pred HH
Confidence 65
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.47 E-value=7.3e-07 Score=70.51 Aligned_cols=145 Identities=12% Similarity=0.001 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhH
Q 046354 309 VSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADI 388 (510)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (510)
..+.-....+.+.|++.+|...|++.... .|. ... ...+. ......+ ...+|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~----------~~~-~~~~~-~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM----------EYG-LSEKE-SKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT----------CCS-CCHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------hhc-cchhh-hhhcchh--------HHHHHHhHHHH
Confidence 34555666777888888888888776542 010 000 00010 1111111 12356678889
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh-HHH
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD-EFA 466 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~A~ 466 (510)
|.+.|++++|+..+++.....| +..+|..+..++...|++++|...|+++++++|+++.....+..+....+... ...
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999887766 77799999999999999999999999999999999988888888876666543 466
Q ss_pred HHHHHHHHh
Q 046354 467 QVRKKMERR 475 (510)
Q Consensus 467 ~~~~~~~~~ 475 (510)
+.+..|.+.
T Consensus 154 k~~~~~f~~ 162 (168)
T d1kt1a1 154 RTYANMFKK 162 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 667666633
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.5e-07 Score=69.45 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=78.3
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchh-------HHHHHH
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGA-------YVLSAN 454 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~ 454 (510)
..+...+.+.|++++|+..|.+..+..| +..++..+..+|...|++++|...++++++++|+++.. |..++.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999887777 67789999999999999999999999999999887664 555667
Q ss_pred HHHHcCCChHHHHHHHHHH
Q 046354 455 VHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 455 ~~~~~g~~~~A~~~~~~~~ 473 (510)
++...+++++|++.|++..
T Consensus 88 ~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 7788889999999998765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=7.6e-08 Score=71.24 Aligned_cols=92 Identities=8% Similarity=-0.037 Sum_probs=78.4
Q ss_pred HhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh---CCHHHHHHHHHHHHhcCCCCc--hhHHHHHHHH
Q 046354 383 SCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH---GDVRMADYIGERLIELQPSSS--GAYVLSANVH 456 (510)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~ 456 (510)
..++..+...+++++|++.|++.....| +..++..+..++.+. +++++|+.++++++..+|.+. .++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4577888899999999999999987766 677888999988764 466679999999998887653 3688999999
Q ss_pred HHcCCChHHHHHHHHHHH
Q 046354 457 AARGEWDEFAQVRKKMER 474 (510)
Q Consensus 457 ~~~g~~~~A~~~~~~~~~ 474 (510)
.+.|++++|+++|+++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 999999999999997764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=4e-07 Score=72.15 Aligned_cols=62 Identities=11% Similarity=-0.019 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|+...+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46777888899999999999999999999999999999999999999999999999998764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.34 E-value=6.3e-07 Score=71.03 Aligned_cols=132 Identities=5% Similarity=-0.078 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCC-CCcchhHhHHhH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFK-PRAEHYSCLADI 388 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~ 388 (510)
.+......+...|++++|+..|++.++. .+. ..... .... .. .+. .....+..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~-------~~~~~---~~~~-------~~---~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG-------SRAAA---EDAD-------GA---KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH-------HHHHS---CHHH-------HG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--hhh-------hhhhh---hhHH-------HH---HhChhhHHHHHHHHHH
Confidence 3555666778889999998888877642 000 00000 0000 00 111 234566778889
Q ss_pred HhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCCh
Q 046354 389 LRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWD 463 (510)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (510)
+.+.|++++|+..+.++.+..| +..+|..+..++...|++++|...|+++++++|+++.....+..+..+.....
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877 67799999999999999999999999999999999888888777765544333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.33 E-value=0.00011 Score=63.89 Aligned_cols=144 Identities=7% Similarity=0.060 Sum_probs=78.1
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHc
Q 046354 22 QPDPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFK 101 (510)
Q Consensus 22 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 101 (510)
.||..--..+.+-|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. .+..+|..+...+..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 81 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 46665556677777788888888888887777 777888888888888887777654 345577777777776
Q ss_pred CCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCC---CCChhHHH
Q 046354 102 ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMP---NKDIVAWN 178 (510)
Q Consensus 102 ~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~ 178 (510)
.....-|.-+ ..... .+ +.....++..|...|.+++...+++... ..+...++
T Consensus 82 ~~e~~la~i~-~~~~~--~~---------------------~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~ 137 (336)
T d1b89a_ 82 GKEFRLAQMC-GLHIV--VH---------------------ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 137 (336)
T ss_dssp TTCHHHHHHT-TTTTT--TC---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred CcHHHHHHHH-HHHhh--cC---------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHH
Confidence 6555433111 10000 11 1122335556666677777777777654 45556677
Q ss_pred HHHHHHHhcCCHHHHHHHHhh
Q 046354 179 AMITAYVDAGNMAQASELFNL 199 (510)
Q Consensus 179 ~li~~~~~~g~~~~A~~~~~~ 199 (510)
.++..|++.+. ++..+.+..
T Consensus 138 ~L~~lyak~~~-~kl~e~l~~ 157 (336)
T d1b89a_ 138 ELAILYSKFKP-QKMREHLEL 157 (336)
T ss_dssp HHHHHHHTTCH-HHHHHHHHH
T ss_pred HHHHHHHHhCh-HHHHHHHHh
Confidence 77777777643 444444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.32 E-value=2.2e-06 Score=66.33 Aligned_cols=127 Identities=10% Similarity=-0.121 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHH
Q 046354 310 SWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADIL 389 (510)
Q Consensus 310 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (510)
.+......+.+.|++.+|+..|++.... -|... ............. ....++..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 4555667778888888888888887753 11110 0000000010011 1123566788888
Q ss_pred hhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 046354 390 RRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHA 457 (510)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (510)
.+.|++++|++.++++.+..| +..+|..+..++...|++++|...|+++++++|+++.....+..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888888876666 66788888888888888888888888888888888777666655543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.24 E-value=1.7e-06 Score=67.01 Aligned_cols=63 Identities=11% Similarity=-0.052 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
..++..+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|+..|++..+
T Consensus 67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 346778889999999999999999999999999999999999999999999999999997663
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.23 E-value=0.00024 Score=60.29 Aligned_cols=149 Identities=9% Similarity=-0.045 Sum_probs=95.5
Q ss_pred cCChhhHHHHHHHHHHcCCCCCchhHH-HHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCCh
Q 046354 321 HGHGFQVFRLFARMLKSGTKPDEITFV-GVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQV 395 (510)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 395 (510)
.++.+.|...++...+.|.......+. ..............+...+..... ..+...+..|...|.. ..+.
T Consensus 87 ~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~ 162 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDL 162 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred chhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCccccc
Confidence 356677777787777765322211111 111222334556666666666554 2455666667777664 4456
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----cCCChHHHH
Q 046354 396 KEAMRVVSKMPPHERDHVVLGALLGACRL----HGDVRMADYIGERLIELQPSSSGAYVLSANVHAA----RGEWDEFAQ 467 (510)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~ 467 (510)
..+...++...+ ..+..+...+...|.. ..++++|...|+++.+.+ ++..+..|+.+|.. ..+.++|.+
T Consensus 163 ~~~~~~~~~a~~-~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~ 239 (265)
T d1ouva_ 163 KKALASYDKACD-LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIE 239 (265)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred ccchhhhhcccc-ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence 677777766551 3356666666666654 568999999999998764 56788889998875 347999999
Q ss_pred HHHHHH-Hhh
Q 046354 468 VRKKME-RRV 476 (510)
Q Consensus 468 ~~~~~~-~~~ 476 (510)
+|++.. .|.
T Consensus 240 ~~~kAa~~g~ 249 (265)
T d1ouva_ 240 NFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHCcC
Confidence 999887 443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.15 E-value=6.6e-06 Score=65.20 Aligned_cols=111 Identities=13% Similarity=-0.011 Sum_probs=79.8
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHVVLGALLGACRLHGDVR 429 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 429 (510)
.......|++++|.+.|...... .+....-. + ..+.+ +...-..+. ......+..+...+...|+++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~~-----~-~~~~w--~~~~r~~l~--~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALRE---WRGPVLDD-----L-RDFQF--VEPFATALV--EDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCSSTTGG-----G-TTSTT--HHHHHHHHH--HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---Cccccccc-----C-cchHH--HHHHHHHHH--HHHHHHHHHHHHHHHHCCCch
Confidence 34566788888888888888753 33221100 0 00111 111111111 112457788899999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 430 MADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 430 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
+|...++++++.+|.+...|..++.+|...|++++|++.|++..
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.13 E-value=2.1e-06 Score=62.42 Aligned_cols=87 Identities=11% Similarity=-0.028 Sum_probs=55.5
Q ss_pred HHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhhCCH
Q 046354 350 LSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLHGDV 428 (510)
Q Consensus 350 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 428 (510)
...+.+.|++++|...|+++.+. .+-++..|..+..++.+.|++++|+..+++..+..| +..+|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 33455566666666666666653 122456666666666667777777777666665555 455666677777777777
Q ss_pred HHHHHHHHHH
Q 046354 429 RMADYIGERL 438 (510)
Q Consensus 429 ~~A~~~~~~~ 438 (510)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=3.8e-06 Score=66.33 Aligned_cols=64 Identities=17% Similarity=0.023 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 411 DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
....|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 4557788888999999999999999999999999999999999999999999999999997774
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=8e-07 Score=83.89 Aligned_cols=145 Identities=13% Similarity=0.022 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhc--CcCCcHHHHHHHHHHHHHhhCCCC-CcchhHhHHhHHhhcCChHHHHH
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDC--SHAGLVEKGRKTFNLMSRAYGFKP-RAEHYSCLADILRRAGQVKEAMR 400 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 400 (510)
+..+.+.++...+....++..........+ ...+.++.++..+.... ++.| +...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 345666666666544344433322222221 12334444444443332 3333 45667778888888888888888
Q ss_pred HHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 401 VVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 401 ~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.++... .++ ..++..+...+...|++++|...|++++++.|++..+|..|+.++...|+..+|+..|.+..
T Consensus 142 ~~~~al--~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 142 PQSSSC--SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp -CCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHh--CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 776655 332 34677788888889999999999999999999999999999999999999999999888766
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.03 E-value=7.9e-06 Score=64.31 Aligned_cols=62 Identities=8% Similarity=-0.020 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 046354 413 VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMER 474 (510)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 474 (510)
.+|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|+++..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.00 E-value=1.4e-06 Score=66.72 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=62.4
Q ss_pred CcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----------cCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHhh
Q 046354 357 GLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----------AGQVKEAMRVVSKMPPHER-DHVVLGALLGACRLH 425 (510)
Q Consensus 357 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 425 (510)
+.+++|...++...+. -|.++..+..+..++.. .+.+++|+..|++..+..| +..+|..+..+|...
T Consensus 11 ~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 4455555555555543 12244455555544442 2345667777777766666 556777777777654
Q ss_pred C-----------CHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 426 G-----------DVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 426 ~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
| ++++|.+.|+++++++|++...+..|....
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 130 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence 3 468899999999999999977766666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.94 E-value=2.7e-06 Score=65.04 Aligned_cols=86 Identities=13% Similarity=-0.044 Sum_probs=70.5
Q ss_pred HHhhcCChHHHHHHHhhCCCCCC-cHHHHHHHHHHHHh----------hCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHER-DHVVLGALLGACRL----------HGDVRMADYIGERLIELQPSSSGAYVLSANVH 456 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~----------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (510)
.|.+.+.+++|...|+...+..| +..++..+..++.. .+.+++|+..|+++++++|+++.+|..++.+|
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 45677889999999999987778 66688888877764 35568999999999999999999999999999
Q ss_pred HHcCC-----------ChHHHHHHHHHH
Q 046354 457 AARGE-----------WDEFAQVRKKME 473 (510)
Q Consensus 457 ~~~g~-----------~~~A~~~~~~~~ 473 (510)
...|+ +++|.+.|++..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal 113 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAV 113 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhccc
Confidence 88764 466777776554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.91 E-value=7.2e-06 Score=63.63 Aligned_cols=90 Identities=16% Similarity=-0.018 Sum_probs=60.9
Q ss_pred HHhhcCChHHHHHHHhhCCCCC---C----------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC---------
Q 046354 388 ILRRAGQVKEAMRVVSKMPPHE---R----------DHVVLGALLGACRLHGDVRMADYIGERLIELQPSS--------- 445 (510)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~---p----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--------- 445 (510)
.+.+.|++++|+..|++..+.. | ...+|+.+..+|...|++++|...+++.+++.|..
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 3445566666666665554321 1 13567788888888888888888888888654321
Q ss_pred --chhHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 446 --SGAYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 446 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
...+..++.+|...|++++|+..|++...-.+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 12367788888889999999988888763333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=7.7e-06 Score=57.15 Aligned_cols=74 Identities=18% Similarity=0.079 Sum_probs=57.1
Q ss_pred hHhHHhHHhhcCChHHHHHHHhhCCCC-------CC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 046354 382 YSCLADILRRAGQVKEAMRVVSKMPPH-------ER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSA 453 (510)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 453 (510)
+-.+...+.+.|++++|...|++..+. .+ ...++..+..++.+.|++++|...++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345666777777777777777665422 22 2457888999999999999999999999999999998877775
Q ss_pred HH
Q 046354 454 NV 455 (510)
Q Consensus 454 ~~ 455 (510)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=4.8e-05 Score=56.42 Aligned_cols=96 Identities=13% Similarity=0.210 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhccccCC-ChhHHHHHHHHHHhcCChhhHHHHHHhhcc--C-Ch-------hhHHHHH
Q 046354 28 CASMITVFLRNHDLPKAEALFRAMPESQR-NIVAESAMIDGYVKAGRVDEARKVFDEIYE--G-NV-------YSWTSLI 96 (510)
Q Consensus 28 ~~~li~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~-------~~~~~li 96 (510)
+..+...+.+.|++++|+..|++..+..| +...+..+..+|.+.|++++|...++.+++ | +. .+|..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 45567788999999999999999998877 577888899999999999999999999855 2 22 3566677
Q ss_pred HHHHcCCChHHHHHHHHhccccCCChh
Q 046354 97 SGYFKARQVDEGRRLFDRMPLKLKNVV 123 (510)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~m~~~~~~~~ 123 (510)
..+...+++++|.+.|++.....++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~~~~ 113 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHRTPD 113 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCHH
Confidence 788888999999999988766545543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.82 E-value=0.0011 Score=56.01 Aligned_cols=213 Identities=9% Similarity=-0.012 Sum_probs=106.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHhccccCCChhHHHHHHHHHHh----cCChhhHHHHHHhhccC-ChhhHHHHHHH
Q 046354 24 DPVSCASMITVFLRNHDLPKAEALFRAMPESQRNIVAESAMIDGYVK----AGRVDEARKVFDEIYEG-NVYSWTSLISG 98 (510)
Q Consensus 24 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~ 98 (510)
|+..+..|...+.+.+++++|++.|++..+.+ +...+..|-..|.. ..+...|...++...++ +......+...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~ 79 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 79 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccc
Confidence 34445555555556666666666666665532 33444444444443 34555666655555443 22333333333
Q ss_pred HHc----CCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchh---------------hHHHHHHHHHHHHh----
Q 046354 99 YFK----ARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKL---------------EVISWTTMCTGLER---- 155 (510)
Q Consensus 99 ~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a---------------~~~~~~~l~~~~~~---- 155 (510)
+.. .++.+.|...++...+..+ ......+...+......... +...+..+...+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 158 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKY-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGT 158 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred cccccccchhhHHHHHHHhhhhhhhh-hhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCc
Confidence 322 3445555555555444211 11111111111111100000 22233333333332
Q ss_pred cCchHHHHHHHhhCC-CCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCChHHHH
Q 046354 156 NAMTKLAREYFVQMP-NKDIVAWNAMITAYVD----AGNMAQASELFNLMPQ-RNVWTWNAMIDRYAR----NGPEGAAM 225 (510)
Q Consensus 156 ~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~ 225 (510)
..+...+...++... ..+......+...|.. ..+.++|...|....+ -++..+..|...|.+ ..+.++|.
T Consensus 159 ~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~ 238 (265)
T d1ouva_ 159 PKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAI 238 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHH
T ss_pred ccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHH
Confidence 334445555555544 3455666666666655 4578888888877655 456666677776665 34778888
Q ss_pred HHHHHHHHCCCCC
Q 046354 226 KLLNLMFQSRFMP 238 (510)
Q Consensus 226 ~~~~~m~~~g~~p 238 (510)
+.|++..+.|..+
T Consensus 239 ~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 239 ENFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHHHHTCHH
T ss_pred HHHHHHHHCcCHH
Confidence 8888887766443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=1.4e-06 Score=82.10 Aligned_cols=171 Identities=8% Similarity=-0.053 Sum_probs=83.8
Q ss_pred cChhhHHHHhcccCC---CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHH
Q 046354 291 LDVNSARLAFERLEA---KDVVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFN 367 (510)
Q Consensus 291 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 367 (510)
+.++.+...+....+ ++...+..+...+.+.|+.++|...++...... | ..++..+...+...|++++|...|+
T Consensus 100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~ 176 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYR 176 (497)
T ss_dssp HHHHHHHHHHTC-------------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 344455554444333 334456666677777788888777776655421 1 2456667777777888888888888
Q ss_pred HHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC-
Q 046354 368 LMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPH-ERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSS- 445 (510)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~- 445 (510)
++.+. .+.+...|+.|+..+...|+..+|...|.+.... .|-..++..|...+.+..+..++. +..+..
T Consensus 177 ~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~-------~~~~~~~ 247 (497)
T d1ya0a1 177 HAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV-------KTKWGVS 247 (497)
T ss_dssp HHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC-------CSSCCHH
T ss_pred HHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhh-------ccccccc
Confidence 88764 2335667788888888888888888888777655 446667777766655432211100 000111
Q ss_pred --chhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 446 --SGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 446 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
...+..+...+...+.++...++.+.+.
T Consensus 248 ~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~ 277 (497)
T d1ya0a1 248 DFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277 (497)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 1124445555666667777666665554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.011 Score=51.07 Aligned_cols=141 Identities=12% Similarity=0.146 Sum_probs=75.7
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHHHhhccCChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhc
Q 046354 56 RNIVAESAMIDGYVKAGRVDEARKVFDEIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHN 135 (510)
Q Consensus 56 p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~ 135 (510)
||..-...+...|.+.|.++.|..++..+.. |..++..+.+.+++..|.+++.+. .+..+|..+...+...
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDG 82 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHHHHHhC
Confidence 5555555677777888888888888876554 677778888888888888777655 3344555444444333
Q ss_pred CCcchhhHHHHHHHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHH
Q 046354 136 GLIAKLEVISWTTMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMI 212 (510)
Q Consensus 136 ~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 212 (510)
.....+ .+.......++.....++..|-..|.+++...+++.... .+...++.++
T Consensus 83 ---------------------~e~~la-~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~ 140 (336)
T d1b89a_ 83 ---------------------KEFRLA-QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 140 (336)
T ss_dssp ---------------------TCHHHH-HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred ---------------------cHHHHH-HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHH
Confidence 222222 111111223444456677778888888888888876433 5556677788
Q ss_pred HHHHhcCChHHHHHHH
Q 046354 213 DRYARNGPEGAAMKLL 228 (510)
Q Consensus 213 ~~~~~~~~~~~A~~~~ 228 (510)
..|++.+ .++..+.+
T Consensus 141 ~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 141 ILYSKFK-PQKMREHL 155 (336)
T ss_dssp HHHHTTC-HHHHHHHH
T ss_pred HHHHHhC-hHHHHHHH
Confidence 7777654 33433333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.71 E-value=1.1e-05 Score=68.31 Aligned_cols=122 Identities=9% Similarity=0.009 Sum_probs=60.5
Q ss_pred CcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHHHHHHHhhCCCCCCcHH-HHHHHHHHHHhhCCHHHHH
Q 046354 354 SHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKEAMRVVSKMPPHERDHV-VLGALLGACRLHGDVRMAD 432 (510)
Q Consensus 354 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~ 432 (510)
.+.|++++|+..+++..+. .+.+...+..++..|+..|++++|...++...+..|+.. .+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 3456666666666666652 233556666666666666666666666666655555332 3333333333333322222
Q ss_pred HHHHHHH-hcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 046354 433 YIGERLI-ELQPSSSGAYVLSANVHAARGEWDEFAQVRKKMERRVK 477 (510)
Q Consensus 433 ~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 477 (510)
..+.... ...|+....+...+..+...|+.++|.+.++++....+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 2111110 11122222244445556666666666666666553333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.48 E-value=7.1e-05 Score=63.14 Aligned_cols=128 Identities=13% Similarity=0.053 Sum_probs=89.8
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCC-cchhHhHHhHHhhcCChH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPR-AEHYSCLADILRRAGQVK 396 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 396 (510)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345789999999999998863 555678888999999999999999999998864 453 444445555554444444
Q ss_pred HHHHHHhhCCC-CCC-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 397 EAMRVVSKMPP-HER-DHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 397 ~A~~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
++..-...... ..| +...+......+...|+.++|...++++.+..|..+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 44333222111 133 333444455667888999999999999999999887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.47 E-value=0.0008 Score=52.78 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHH----hhCCCCCcchh
Q 046354 308 VVSWTAMILAYSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSR----AYGFKPRAEHY 382 (510)
Q Consensus 308 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 382 (510)
...+..+...+...|++++|+..++++.... +-+...|..++.++...|+.++|++.|+++.+ ..|+.|++.+-
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 3467778899999999999999999999863 56777899999999999999999999998744 24889887653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00024 Score=49.18 Aligned_cols=64 Identities=11% Similarity=-0.032 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046354 412 HVVLGALLGACRLHGDVRMADYIGERLIELQPSS-------SGAYVLSANVHAARGEWDEFAQVRKKMERR 475 (510)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 475 (510)
...+-.+...+.+.|++.+|...|++++++.|.+ ..++..++.+|.+.|++++|+..++++.+-
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3444567888999999999999999999776543 345888999999999999999999987743
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.21 E-value=0.00015 Score=55.80 Aligned_cols=65 Identities=17% Similarity=0.013 Sum_probs=44.4
Q ss_pred hhHhHHhHHhhcCChHHHHHHHhhCCC-------CCCc-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCC
Q 046354 381 HYSCLADILRRAGQVKEAMRVVSKMPP-------HERD-----HVVLGALLGACRLHGDVRMADYIGERLIELQPSS 445 (510)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 445 (510)
.|+.+..+|.+.|++++|...+++..+ ..++ ...+..+..+|...|++++|...|++++++.|..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 445566666667776666665554432 1221 2256778889999999999999999999776543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.16 Score=45.89 Aligned_cols=114 Identities=8% Similarity=-0.054 Sum_probs=60.2
Q ss_pred CChhhHHHHHHHHHHcCCCCCchhH----HHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 322 GHGFQVFRLFARMLKSGTKPDEITF----VGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
.+.+.|..++....... ..+..-. ..+.......+..+.+..++...... ..+.......+....+.+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHH
Confidence 45666776666665532 1221111 12223334455556666666555443 2333444444555556677777
Q ss_pred HHHHHhhCCCCCCc-HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 046354 398 AMRVVSKMPPHERD-HVVLGALLGACRLHGDVRMADYIGERLI 439 (510)
Q Consensus 398 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 439 (510)
+...+..+...... ....-=+..++...|+.+.|...|..+.
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 77777777633222 2222334556666777777777777664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.18 Score=45.54 Aligned_cols=413 Identities=10% Similarity=-0.011 Sum_probs=222.6
Q ss_pred cCCCChHHHHHHHhhcCCCChhhHHHHHHHHH--hcCChhhHHHHHHhccccCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 046354 5 GCTGKVKEATKLFDEMSQPDPVSCASMITVFL--RNHDLPKAEALFRAMPESQRNIVAESAMIDGYVKAGRVDEARKVFD 82 (510)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 82 (510)
.+.|+..++.++...+..-....|-..-..-. ......+...+++.-.........-...+..+.+.++++.....+.
T Consensus 17 ~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~ 96 (450)
T d1qsaa1 17 WDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP 96 (450)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC
T ss_pred HHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc
Confidence 35677888888888875322444443332222 2334455555554433321122233345667788888877665443
Q ss_pred hhccCChhhHHHHHHHHHcCCChHHHHHHHHhcccc-CCChhhHHHHHHHHHhcCCcchhhHHHHHHHHHHHHhcCchHH
Q 046354 83 EIYEGNVYSWTSLISGYFKARQVDEGRRLFDRMPLK-LKNVVSWTTVVLGCAHNGLIAKLEVISWTTMCTGLERNAMTKL 161 (510)
Q Consensus 83 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 161 (510)
.-+ .+...-..+..+....|+...|...+..+-.. ......+..+...+...|.... ..+-.-+......|+...
T Consensus 97 ~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~---~~~~~R~~~~l~~~~~~~ 172 (450)
T d1qsaa1 97 EKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP---LAYLERIRLAMKAGNTGL 172 (450)
T ss_dssp SCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH---HHHHHHHHHHHHTTCHHH
T ss_pred CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhh
Confidence 221 24444556778888899999999888776554 4455667778877777766643 333344555666788888
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCC
Q 046354 162 AREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQRNVWTWNAMIDRYAR--NGPEGAAMKLLNLMFQSRFMPN 239 (510)
Q Consensus 162 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~ 239 (510)
|..+...+...........+.....-..+ ........ .+......+..++.+ ..+.+.|..++...........
T Consensus 173 a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~~~~~-~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~ 248 (450)
T d1qsaa1 173 VTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTTG-ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNE 248 (450)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHhhCChhHHHHHHHHHHHHhChHhH---HHHHhcCC-CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccH
Confidence 88888776544444455555544333333 22222222 222222222222222 3467777777777654321111
Q ss_pred HhhHHHHHHHhhhhhhhhHHHHHHHHhCCCcchhhhhhhhhhccccccccccChhhHHHHhcccCC--CChhhHHHHHHH
Q 046354 240 ETTCTSILTSCEGMLENMLAHALAIRLGFEQETSLTYKCTCHYVFWDWGFQLDVNSARLAFERLEA--KDVVSWTAMILA 317 (510)
Q Consensus 240 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~ 317 (510)
.....+-. .+.... ...+..+.+...+..... .+.....-.+..
T Consensus 249 -~~~~~~~~----------------------------~~a~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~ 294 (450)
T d1qsaa1 249 -DQIQELRD----------------------------IVAWRL-----MGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM 294 (450)
T ss_dssp -HHHHHHHH----------------------------HHHHTS-----CSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred -HHHHHHHH----------------------------HHHHHH-----HHcCchHHHHHHHHhhcccccchHHHHHHHHH
Confidence 11111111 011111 334445555554443322 222222334444
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
..+.++...+...++.|... ..-...-.--+..++...|+.+.|..+|..+.. .++ -|..|... +.|..-
T Consensus 295 al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~- 364 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEY- 364 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCC-
T ss_pred HHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCC-
Confidence 55678888888888776432 111122334456777888899999988888753 232 44433321 222210
Q ss_pred HHHHHhhCCCCCCcHH----HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 398 AMRVVSKMPPHERDHV----VLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 398 A~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.+-..-....+... .-..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+....+..
T Consensus 365 --~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 365 --ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp --CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred --CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 00000000111110 11123455678899999999998877433 34567788888999999999998776654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.04 Score=38.94 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=52.6
Q ss_pred CCcchhHhHHhHHhhcC---ChHHHHHHHhhCCCCCC-cH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhH
Q 046354 377 PRAEHYSCLADILRRAG---QVKEAMRVVSKMPPHER-DH-VVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAY 449 (510)
Q Consensus 377 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p-~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 449 (510)
|++.+--.++.++.+.. ++++++.++++..+..| +. ..+-.|..+|.+.|++++|.+.++++++.+|++..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 34445445555666554 45677888877765556 33 4777788889999999999999999999999987553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.07 E-value=0.15 Score=36.82 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----cCCChHHHHHHHHHH
Q 046354 426 GDVRMADYIGERLIELQPSSSGAYVLSANVHAA----RGEWDEFAQVRKKME 473 (510)
Q Consensus 426 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 473 (510)
.|.++|.+.|++..+. .++.....|+..|.. ..+.++|.++|++..
T Consensus 73 ~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 3566666666666543 334455566666655 335666666666654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.95 E-value=0.031 Score=39.56 Aligned_cols=65 Identities=9% Similarity=-0.121 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHHHhh---CCHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHcCCChHHHHHHHHHH
Q 046354 409 ERDHVVLGALLGACRLH---GDVRMADYIGERLIELQPSSS-GAYVLSANVHAARGEWDEFAQVRKKME 473 (510)
Q Consensus 409 ~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 473 (510)
.|...+--....++.++ .+..+++.+++++.+.+|.+. ..+..|+-+|.+.|++++|+++++.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566666677777755 566899999999998888764 568899999999999999999999766
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.69 E-value=0.41 Score=33.36 Aligned_cols=140 Identities=10% Similarity=0.063 Sum_probs=89.5
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhhcCChHH
Q 046354 318 YSNHGHGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRRAGQVKE 397 (510)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (510)
+...|..++..+++.+.... .+..-|+.+|--....-+-+...+.++.+-+-|.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 44568888888888887764 344556666654444455556666666664432222 2334444
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCChHHHHHHHHHH-Hhh
Q 046354 398 AMRVVSKMPPHERDHVVLGALLGACRLHGDVRMADYIGERLIELQPSSSGAYVLSANVHAARGEWDEFAQVRKKME-RRV 476 (510)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 476 (510)
....+-.+- .+...++..+.....+|.-++-.+++..+.+.+..+|.....++++|.+.|...++-+++.+.. +|+
T Consensus 75 vv~C~~~~n---~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 75 VVECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 444333332 3334455667777788888888888888776666667778888888888888888888888877 554
Q ss_pred c
Q 046354 477 K 477 (510)
Q Consensus 477 ~ 477 (510)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.93 E-value=0.34 Score=34.82 Aligned_cols=111 Identities=10% Similarity=-0.034 Sum_probs=73.7
Q ss_pred ChhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHhHHhh----cCChHHH
Q 046354 323 HGFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLADILRR----AGQVKEA 398 (510)
Q Consensus 323 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 398 (510)
|+++|+.+|++..+.|. ......+. .....+.++|.+++++..+. | ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 56788888888877762 22233333 34456788899988888764 4 44455556666653 4568899
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCC
Q 046354 399 MRVVSKMPPHERDHVVLGALLGACRL----HGDVRMADYIGERLIELQP 443 (510)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 443 (510)
.++|++..+. -++.....|...|.. ..|.++|...|+++.+...
T Consensus 79 ~~~~~~aa~~-g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhcc-CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999887633 244455556666654 3589999999999876543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.50 E-value=1.1 Score=31.19 Aligned_cols=136 Identities=16% Similarity=0.080 Sum_probs=85.9
Q ss_pred HhcCChhhHHHHHHhhcc-CChhhHHHHHHHHHcCCChHHHHHHHHhccccCCChhhHHHHHHHHHhcCCcchhhHHHHH
Q 046354 69 VKAGRVDEARKVFDEIYE-GNVYSWTSLISGYFKARQVDEGRRLFDRMPLKLKNVVSWTTVVLGCAHNGLIAKLEVISWT 147 (510)
Q Consensus 69 ~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 147 (510)
.-.|.+++..+++.+... .+..-||.+|--....-+-+-..++++.+-+. -|.
T Consensus 13 ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDl------------------------- 66 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL------------------------- 66 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG-------------------------
T ss_pred HHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh-cCc-------------------------
Confidence 345777777777776644 34445666655555455555555555555442 111
Q ss_pred HHHHHHHhcCchHHHHHHHhhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCChHHH
Q 046354 148 TMCTGLERNAMTKLAREYFVQMPNKDIVAWNAMITAYVDAGNMAQASELFNLMPQ---RNVWTWNAMIDRYARNGPEGAA 224 (510)
Q Consensus 148 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A 224 (510)
...++.......+-.+. .+.......++....+|+-++-.++++.+.+ +++...-.+..+|-+.|...++
T Consensus 67 ------s~C~Nlk~vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~ 139 (161)
T d1wy6a1 67 ------DKCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDA 139 (161)
T ss_dssp ------GGCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred ------hhhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhH
Confidence 12233333333333332 2334455667788888998888888877443 7888888888999999999999
Q ss_pred HHHHHHHHHCCCC
Q 046354 225 MKLLNLMFQSRFM 237 (510)
Q Consensus 225 ~~~~~~m~~~g~~ 237 (510)
-+++.+.-+.|++
T Consensus 140 nell~~ACe~G~K 152 (161)
T d1wy6a1 140 TTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhHH
Confidence 9999999888864
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.21 E-value=0.51 Score=31.11 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHhcCcCCcHHHHHHHHHHHHHhhCCCCCcchhHhHHh
Q 046354 324 GFQVFRLFARMLKSGTKPDEITFVGVLSDCSHAGLVEKGRKTFNLMSRAYGFKPRAEHYSCLAD 387 (510)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (510)
.-++.+-++.+....+-|++....+.+++|.+.+|+..|.++++..+.+ ..++..+|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 3355666666666777888888888888888888888888888888764 3334556665543
|